replication factor C subunit 2

Overview
Namereplication factor C subunit 2 (AFJ24737.1)
Smed IDSMED30028415
Length (bp)2699
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of replication factor C subunit 2 (SMED30028415) t-SNE clustered cells

Violin plots show distribution of expression levels for replication factor C subunit 2 (SMED30028415) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of replication factor C subunit 2 (SMED30028415) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for replication factor C subunit 2 (SMED30028415) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30028415

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 11

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30028415SMESG000041142.1 SMESG000041132.1 SmedASXL_012323SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30028415SMESG000041142.1 SMESG000041132.1 SmedASXL_012323SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
neoblastSMED30028415SMESG000041142.1 SMESG000041132.1 dd_Smed_v4_8732_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parapharyngeal regionSMED30028415SMESG000041142.1 SMESG000041132.1 dd_Smed_v6_8732_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
zeta neoblastSMED30028415SMESG000041142.1 SMESG000041132.1 dd_Smed_v4_8732_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
neoblastSMED30028415SMESG000041142.1 SMESG000041132.1 SmWIOct06_019276GPL14150_gene_modelsPMID:22385657
Wagner et al., 2012		whole organism asexual adult cDNA to DNA expression microarray evidence
neoblastSMED30028415SMESG000041132.1 SMED_00701_V2_1GPL14150_gene_modelsPMID:22385657
Wagner et al., 2012		whole organism asexual adult cDNA to DNA expression microarray evidence
neoblastSMED30028415SMESG000041132.1 SMED_00701_V2_1GPL14150PMID:22385657
Wagner et al., 2012		whole organism asexual adult cDNA to DNA expression microarray evidence
neoblastSMED30028415SMESG000041142.1 SMESG000041132.1 SmWIOct06_009661GPL14150_gene_modelsPMID:22385657
Wagner et al., 2012		whole organism asexual adult cDNA to DNA expression microarray evidence
neoblastSMED30028415SMESG000041142.1 SMESG000041132.1 SMED_00701_V2_1GPL14150_gene_modelsPMID:22385657
Wagner et al., 2012		whole organism asexual adult cDNA to DNA expression microarray evidence
neoblastSMED30028415SMESG000041142.1 SMESG000041132.1 SMED_00701_V2_1GPL14150PMID:22385657
Wagner et al., 2012		whole organism asexual adult cDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Human
Match: RFC2 (replication factor C subunit 2 [Source:HGNC Symbol;Acc:HGNC:9970])

HSP 1 Score: 337.035 bits (863), Expect = 1.954e-107
Identity = 155/209 (74.16%), Postives = 185/209 (88.52%), Query Frame = 3 
Query:   48 GNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
              H+ELPW+EKYRP+ L++IVGNE T+ RLE+F+++GN+PN+IIAGPPG+GKTTSILCLARA+LG   K+A+LELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRYTKL+D++IL RL+ +I+ E V YTDDGLEAIIFTAQGDMRQA+NN++ T
Sbjct:   31 AGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQST 239

HSP 2 Score: 138.272 bits (347), Expect = 7.151e-35
Identity = 64/112 (57.14%), Postives = 84/112 (75.00%), Query Frame = 2 
Query: 1328 FQGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASAA 1663
            F GFG + S+NVFKVCDEPHPLL+K M+++CV +  +EA+K L +L   GYSPEDIIG IFRV K    + E+LKL FIKEIG  HM+I +G+ + LQ+AGL+ RLC+ + A
Sbjct:  240 FSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQ-MAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMA 350
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Human
Match: RFC2 (replication factor C subunit 2 [Source:HGNC Symbol;Acc:HGNC:9970])

HSP 1 Score: 267.314 bits (682), Expect = 1.495e-81
Identity = 129/209 (61.72%), Postives = 157/209 (75.12%), Query Frame = 3 
Query:   48 GNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
              H+ELPW+EKYRP+ L++IVGNE T+ RLE+F+++GN+PN+IIAGPPG+GKTTSILCLARA+LG   K+A+LELNASND                                  SMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRYTKL+D++IL RL+ +I+ E V YTDDGLEAIIFTAQGDMRQA+NN++ T
Sbjct:   31 AGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASND----------------------------------SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQST 205

HSP 2 Score: 138.272 bits (347), Expect = 3.132e-35
Identity = 64/112 (57.14%), Postives = 84/112 (75.00%), Query Frame = 2 
Query: 1328 FQGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASAA 1663
            F GFG + S+NVFKVCDEPHPLL+K M+++CV +  +EA+K L +L   GYSPEDIIG IFRV K    + E+LKL FIKEIG  HM+I +G+ + LQ+AGL+ RLC+ + A
Sbjct:  206 FSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQ-MAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMA 316
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Human
Match: RFC2 (replication factor C subunit 2 [Source:HGNC Symbol;Acc:HGNC:9970])

HSP 1 Score: 209.534 bits (532), Expect = 3.660e-61
Identity = 100/132 (75.76%), Postives = 115/132 (87.12%), Query Frame = 3 
Query:  279 SNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
            S+ RGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRYTKL+D++IL RL+ +I+ E V YTDDGLEAIIFTAQGDMRQA+NN++ T
Sbjct:    5 SSLRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQST 136

HSP 2 Score: 138.658 bits (348), Expect = 3.932e-36
Identity = 64/112 (57.14%), Postives = 84/112 (75.00%), Query Frame = 2 
Query: 1328 FQGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASAA 1663
            F GFG + S+NVFKVCDEPHPLL+K M+++CV +  +EA+K L +L   GYSPEDIIG IFRV K    + E+LKL FIKEIG  HM+I +G+ + LQ+AGL+ RLC+ + A
Sbjct:  137 FSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQ-MAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMA 247
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Human
Match: RFC4 (replication factor C subunit 4 [Source:HGNC Symbol;Acc:HGNC:9972])

HSP 1 Score: 191.045 bits (484), Expect = 2.262e-53
Identity = 101/225 (44.89%), Postives = 145/225 (64.44%), Query Frame = 3 
Query:   33 GENLEGNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLG-ETYKNAVLELNASNDRGIEVVRNKIKSFARNKVN------LPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTHKVT 686
            GEN +     +PW+EKYRP  + ++   E  +  L+   +  +LPNL+  GPPG+GKT++IL  AR + G E ++  VLELNAS++RGI+VVR K+K+FA+  V+       P    KI+ILDE DSMT  AQ ALRRTME  S TTRF   CN  S+IIEP+ SRC+  R+  LSD     RLL+I K E+V  +D+G+  ++  ++GD+R+AI  ++   ++T
Sbjct:   30 GENKKAKP--VPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLT 252
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Human
Match: RFC4 (replication factor C subunit 4 [Source:HGNC Symbol;Acc:HGNC:9972])

HSP 1 Score: 191.045 bits (484), Expect = 4.327e-53
Identity = 101/225 (44.89%), Postives = 145/225 (64.44%), Query Frame = 3 
Query:   33 GENLEGNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLG-ETYKNAVLELNASNDRGIEVVRNKIKSFARNKVN------LPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTHKVT 686
            GEN +     +PW+EKYRP  + ++   E  +  L+   +  +LPNL+  GPPG+GKT++IL  AR + G E ++  VLELNAS++RGI+VVR K+K+FA+  V+       P    KI+ILDE DSMT  AQ ALRRTME  S TTRF   CN  S+IIEP+ SRC+  R+  LSD     RLL+I K E+V  +D+G+  ++  ++GD+R+AI  ++   ++T
Sbjct:   30 GENKKAKP--VPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLT 252
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Celegans
Match: rfc-2 (RFC (DNA replication factor) family [Source:UniProtKB/TrEMBL;Acc:O44175])

HSP 1 Score: 303.138 bits (775), Expect = 3.651e-95
Identity = 137/203 (67.49%), Postives = 171/203 (84.24%), Query Frame = 3 
Query:   66 PWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
            PW+EKYRP VL+DIVGNE  ++RL++   +GN+PN++++GPPG GKTTS+  LAR +LG+  K AVLELNAS++RGI+VVR++IK+FA+ KV LP+G HKIIILDE DSMT+GAQQALRRTMEMY+ TTRFA ACN S KIIEPIQSRCA+LRYTKLS  ++L R+ E+ K E V Y D GLEAI+FTAQGDMRQA+NN++ T
Sbjct:   11 PWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARELLGDKVKEAVLELNASDERGIDVVRHRIKTFAQTKVTLPEGRHKIIILDEADSMTDGAQQALRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEVAKAEKVNYDDGGLEAILFTAQGDMRQALNNLQAT 213

HSP 2 Score: 98.5969 bits (244), Expect = 4.798e-22
Identity = 48/109 (44.04%), Postives = 66/109 (60.55%), Query Frame = 2 
Query: 1334 GFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKN---HDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCR 1651
             +  V  +NV KVCDEPHP L+  ML  C + KF EA K ++     G+S +DI+  +FRV K       + E L++ +I++I   HMRIV GLT+ LQL+ LI  LCR
Sbjct:  216 AYELVNKENVLKVCDEPHPDLMIKMLHYCTDRKFFEASKIIHEFHRLGFSSDDIVSTLFRVVKTVELSKNVSEQLRMEYIRQIAMCHMRIVQGLTSKLQLSRLIADLCR 324
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Celegans
Match: F44B9.8 (Probable replication factor C subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:P34429])

HSP 1 Score: 179.489 bits (454), Expect = 2.065e-49
Identity = 93/213 (43.66%), Postives = 131/213 (61.50%), Query Frame = 3 
Query:   63 LPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGET-YKNAVLELNASNDRGIEVVRNKIKSFARNK--------VNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
            LPW+EKYRP  L ++V +E  +K L  F +   LP+L+  GPPG+GKTT++L  AR M   T   + VLELNAS++RGI+VVRN I +FA+ K         N      K++ILDE D+MT+ AQ ALRR +E Y++  RF   CN  + I+  IQSRC   R+  L    I+ RL  I++ E +  T DG +A++  ++GDMR  IN ++ T
Sbjct:   29 LPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQST 241
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Celegans
Match: rfc-4 (Replication factor C subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:P53016])

HSP 1 Score: 154.066 bits (388), Expect = 6.110e-41
Identity = 83/207 (40.10%), Postives = 127/207 (61.35%), Query Frame = 3 
Query:   63 LPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGET-YKNAVLELNASNDRGIEVVRNKIKSFARNKV---NLPDGMH-KIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVE 668
            L W EKYRP  L DI   +  +  L+   +  +LP+L+  GPPG+GKT++ L   R +  +  + + VL+LNAS++RGI VVR KI+SF+++ +   +  D +  KIIILDE D+MT  AQ A+RR +E +S TTRF   CN  S++I P+ SRCA  R+  L     + RL  I   E    +DD L+ ++  ++GD+R+A+  ++
Sbjct:   15 LTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQ 221
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Celegans
Match: rfc-3 (RFC (DNA replication factor) family [Source:UniProtKB/TrEMBL;Acc:Q18547])

HSP 1 Score: 111.694 bits (278), Expect = 2.499e-26
Identity = 70/229 (30.57%), Postives = 117/229 (51.09%), Query Frame = 3 
Query:   69 WLEKYRPLVLSDIVGNEGTIKRLE-----IFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLG-------------ETYKNAVLELN-ASNDRGIE------------VVRNKIKSFARNKV--NLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAI 656
            W++KYRP    D++G +G    +E      F     +P+L+  GP G+GK T I CL R + G              +  N  LE+   S++  IE            VV++ +K  A+     +      K+++L E DS+T  AQ  LRRTME Y+N  +   +C   S+IIEP+QSRC ++     +D ++   L ++I+ ES +  ++ L+ I+  ++G++R+AI
Sbjct:    4 WVDKYRP---KDLLGKDGVDYHIEQANHLKFLSADCMPHLLFCGPSGAGKKTRIKCLLRELYGVGVEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEMAQTSQIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRCIIINVPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAI 229
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Fly
Match: RfC4 (gene:FBgn0260985 transcript:FBtr0073264)

HSP 1 Score: 322.398 bits (825), Expect = 1.689e-102
Identity = 147/205 (71.71%), Postives = 177/205 (86.34%), Query Frame = 3 
Query:   60 ELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
             LPW+EKYRP+   +IVGNE T+ RL +F+ QGN PN+IIAGPPG GKTT+I CLAR +LG++YK AVLELNASN+RGI+VVRNKIK FA+ KV LP G HKI+ILDE DSMTEGAQQALRRTME+YS+TTRFA ACN S KIIEPIQSRCAMLR+TKLSD+++LA+L+E+ K E + YT+DGLEAI+FTAQGDMRQ +NN++ T
Sbjct:   15 HLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQST 219

HSP 2 Score: 122.865 bits (307), Expect = 4.298e-30
Identity = 58/109 (53.21%), Postives = 78/109 (71.56%), Query Frame = 2 
Query: 1331 QGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRAS 1657
            QGFG +T++NVFKVCDEPHP L++ M+ +C  +  ++A+K L  L   GYSPEDII  IFRV K  + I E LKL FI+EIG  HM+I+DG+ + LQL  L+ +LC A+
Sbjct:  221 QGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDIHKAYKILAKLWKLGYSPEDIIANIFRVCKRIN-IDEHLKLDFIREIGITHMKIIDGINSLLQLTALLAKLCIAA 328
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Fly
Match: CG8142 (gene:FBgn0030871 transcript:FBtr0074472)

HSP 1 Score: 190.66 bits (483), Expect = 1.777e-53
Identity = 95/212 (44.81%), Postives = 139/212 (65.57%), Query Frame = 3 
Query:   66 PWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVN--LPDGM----HKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTHKV 683
            PW+EKYRP  + D+V     +  L    + G+LPN+++ GPPG+GKT++IL  +R + G+ +K+ +LELNAS++RGI VVR KIK+F++   +   PDG      KIIILDE DSMT  AQ ALRRTME  S +TRF   CN  S+II PI SRC+  R+  L + +++ RL  I +ME V   DD  ++I+  + GD+R+AI  ++  +++
Sbjct:   31 PWVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGDMFKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLKYICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQSCYRL 242
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Fly
Match: RfC3 (gene:FBgn0032244 transcript:FBtr0080019)

HSP 1 Score: 186.808 bits (473), Expect = 2.785e-52
Identity = 94/210 (44.76%), Postives = 136/210 (64.76%), Query Frame = 3 
Query:   48 GNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLG-ETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
            G    +PW+EKYRP  L D++ +E  I  +  F  +  LP+L+  GPPG+GKT++IL  AR +   + +K+ VLELNAS+DRGI +VR +I +FA  +    D   K+IILDE D+MT  AQ ALRR +E Y++  RF   CN  SKII  +QSRC   R+  LS  +++ RL +II+ E+V  T+DG  A++  A+GDMR+ +N ++ T
Sbjct:    6 GPAVRMPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCDTF-KLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQST 214
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Fly
Match: RfC38 (gene:FBgn0028700 transcript:FBtr0080225)

HSP 1 Score: 107.842 bits (268), Expect = 7.933e-25
Identity = 68/226 (30.09%), Postives = 115/226 (50.88%), Query Frame = 3 
Query:   69 WLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLG---ETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPD-GMH--------------------------KIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAI 656
            W++KYRP  LS +  ++   + L    KQ + P+L+  GP G+GK T I+CL R M G   E  ++  +     ++R +EV+   + S    +VN  D GM+                          K+I++ EGD +T+ AQ ALRRTME Y  T R   + N +S+II  I+SRC  +R    +++EI++ L    K E +    +  + ++  ++ ++R+A+
Sbjct:    4 WVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGSGVERLRSETMTFTTPSNRKVEVM--TVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRAL 227
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Fly
Match: RfC38 (gene:FBgn0028700 transcript:FBtr0344786)

HSP 1 Score: 107.842 bits (268), Expect = 7.933e-25
Identity = 68/226 (30.09%), Postives = 115/226 (50.88%), Query Frame = 3 
Query:   69 WLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLG---ETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPD-GMH--------------------------KIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAI 656
            W++KYRP  LS +  ++   + L    KQ + P+L+  GP G+GK T I+CL R M G   E  ++  +     ++R +EV+   + S    +VN  D GM+                          K+I++ EGD +T+ AQ ALRRTME Y  T R   + N +S+II  I+SRC  +R    +++EI++ L    K E +    +  + ++  ++ ++R+A+
Sbjct:    4 WVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGSGVERLRSETMTFTTPSNRKVEVM--TVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRAL 227
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Zebrafish
Match: rfc2 (replication factor C (activator 1) 2 [Source:ZFIN;Acc:ZDB-GENE-050306-29])

HSP 1 Score: 326.635 bits (836), Expect = 3.862e-103
Identity = 151/207 (72.95%), Postives = 183/207 (88.41%), Query Frame = 3 
Query:   57 FELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTH 677
            +ELPW+EKYRPL L++IVGNE T+ RLE+F+++GN+PN+IIAGPPG+GKTTSILCLARA+LG   K+AVLELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRY+KL D +I+ RL E+++ E++  T+DGLEAIIFTAQGDMRQA+NN++ T+
Sbjct:   64 YELPWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKENLHVTNDGLEAIIFTAQGDMRQALNNLQSTN 270

HSP 2 Score: 144.821 bits (364), Expect = 5.203e-37
Identity = 65/109 (59.63%), Postives = 85/109 (77.98%), Query Frame = 2 
Query: 1334 GFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASA 1660
            GFG + S+NVFKVCDEPHPLL+KSMLE+CV +  +EA+K +  L + GYSPEDIIG IFRV K    + E+LKL +IKEIG  HM++ +G+ + LQ+AGL+GRLCR +A
Sbjct:  272 GFGYINSENVFKVCDEPHPLLVKSMLEHCVNANIDEAYKIIEQLWSLGYSPEDIIGNIFRVCKTFQ-MAEYLKLEYIKEIGYTHMKVAEGVNSLLQMAGLLGRLCRKTA 379
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Zebrafish
Match: rfc5 (replication factor C (activator 1) 5 [Source:ZFIN;Acc:ZDB-GENE-040907-1])

HSP 1 Score: 193.741 bits (491), Expect = 1.423e-54
Identity = 92/206 (44.66%), Postives = 138/206 (66.99%), Query Frame = 3 
Query:   63 LPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGET-YKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTH 677
            LPW+EKYRP  L D++ ++  +  ++ F  +  LP+L+  GPPG+GKT++IL  AR +  +  + + VLELNAS+DRGI+VVR  I SFA  +     G  K++ILDE D+MT+ AQ ALRR +E ++  TRF   CN  SKII  +QSRC   R+  LS ++++ RL  +I+ ES+  T DG++AI+  + GDMR+++N ++ TH
Sbjct:   14 LPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGF-KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQSTH 218
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Zebrafish
Match: rfc4 (replication factor C (activator 1) 4 [Source:ZFIN;Acc:ZDB-GENE-040824-3])

HSP 1 Score: 175.252 bits (443), Expect = 2.179e-49
Identity = 92/194 (47.42%), Postives = 124/194 (63.92%), Query Frame = 3 
Query:   45 EGNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLG-ETYKNAVLELNASNDRGIEVVRNKIKSFARNKV--NLPDGM----HKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDD 605
            E     +PW+EKYRP  + ++   E  +  L+   +  +LPNL+  GPPG+GKT++IL  AR + G + Y+  VLELNAS++RGI+VVR K+K FA+  V    PDG      KIIILDE DSMT  AQ ALRRTME  S TTRF   CN  S+IIEP+ SRC+  R+  L++     R+LEI + E++ YT +
Sbjct:   27 EKKQRAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLANDVQQERILEICRKENLKYTTE 220
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Zebrafish
Match: rfc4 (replication factor C (activator 1) 4 [Source:ZFIN;Acc:ZDB-GENE-040824-3])

HSP 1 Score: 175.252 bits (443), Expect = 2.179e-49
Identity = 92/194 (47.42%), Postives = 124/194 (63.92%), Query Frame = 3 
Query:   45 EGNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLG-ETYKNAVLELNASNDRGIEVVRNKIKSFARNKV--NLPDGM----HKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDD 605
            E     +PW+EKYRP  + ++   E  +  L+   +  +LPNL+  GPPG+GKT++IL  AR + G + Y+  VLELNAS++RGI+VVR K+K FA+  V    PDG      KIIILDE DSMT  AQ ALRRTME  S TTRF   CN  S+IIEP+ SRC+  R+  L++     R+LEI + E++ YT +
Sbjct:   27 EKKQRAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLANDVQQERILEICRKENLKYTTE 220
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Zebrafish
Match: rfc4 (replication factor C (activator 1) 4 [Source:ZFIN;Acc:ZDB-GENE-040824-3])

HSP 1 Score: 179.104 bits (453), Expect = 3.388e-49
Identity = 96/210 (45.71%), Postives = 131/210 (62.38%), Query Frame = 3 
Query:   45 EGNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLG-ETYKNAVLELNASNDRGIEVVRNKIKSFARNKV--NLPDGM----HKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQA 653
            E     +PW+EKYRP  + ++   E  +  L+   +  +LPNL+  GPPG+GKT++IL  AR + G + Y+  VLELNAS++RGI+VVR K+K FA+  V    PDG      KIIILDE DSMT  AQ ALRRTME  S TTRF   CN  S+IIEP+ SRC+  R+  L++     R+LEI + E++ YT + ++ +    Q DM  A
Sbjct:   27 EKKQRAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLANDVQQERILEICRKENLKYTTEIIQCLRQKQQLDMTAA 236
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Xenopus
Match: prokr1 (prokineticin receptor 1 [Source:Xenbase;Acc:XB-GENE-920239])

HSP 1 Score: 338.961 bits (868), Expect = 1.117e-108
Identity = 155/206 (75.24%), Postives = 186/206 (90.29%), Query Frame = 3 
Query:   57 FELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
            +ELPW+EKYRPL LS+IVGNE T+ RLE+F+++GN+PN+IIAGPPG+GKTTSILCLARA+LG T K+AVLELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRYTKL+D+++LARL+++++ E V  TDDGLEAI+FTAQGDMRQA+NN++ T
Sbjct:   29 YELPWVEKYRPLKLSEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPTMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMDVVEKERVQCTDDGLEAIVFTAQGDMRQALNNLQST 234

HSP 2 Score: 88.1965 bits (217), Expect = 3.315e-18
Identity = 50/111 (45.05%), Postives = 62/111 (55.86%), Query Frame = 2 
Query: 1328 FQGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASA 1660
            F GFG V S NVFKV                           + +L   GYSPEDIIG IFRV K    +PE+LKL FIKEIG  HM+I +G+ + LQ+AGL+ RLC+ +A
Sbjct:  235 FAGFGFVNSTNVFKV---------------------------VAHLWKLGYSPEDIIGNIFRVCKTFQ-MPEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTA 317
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Xenopus
Match: prokr1 (prokineticin receptor 1 [Source:Xenbase;Acc:XB-GENE-920239])

HSP 1 Score: 337.806 bits (865), Expect = 4.243e-108
Identity = 155/206 (75.24%), Postives = 186/206 (90.29%), Query Frame = 3 
Query:   57 FELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
            +ELPW+EKYRPL LS+IVGNE T+ RLE+F+++GN+PN+IIAGPPG+GKTTSILCLARA+LG T K+AVLELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRYTKL+D+++LARL+++++ E V  TDDGLEAI+FTAQGDMRQA+NN++ T
Sbjct:   30 YELPWVEKYRPLKLSEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPTMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMDVVEKERVQCTDDGLEAIVFTAQGDMRQALNNLQST 235

HSP 2 Score: 105.145 bits (261), Expect = 8.861e-24
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 2 
Query: 1328 FQGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIK 1567
            F GFG V S NVFKVCDEPHPLL+K ML++CV +  +EA+K + +L   GYSPEDIIG IFRV K    +PE+LKL FIK
Sbjct:  236 FAGFGFVNSTNVFKVCDEPHPLLVKEMLQHCVNANIDEAYKVVAHLWKLGYSPEDIIGNIFRVCKTFQ-MPEYLKLEFIK 314
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Xenopus
Match: prokr1 (prokineticin receptor 1 [Source:Xenbase;Acc:XB-GENE-920239])

HSP 1 Score: 338.191 bits (866), Expect = 6.855e-108
Identity = 155/206 (75.24%), Postives = 186/206 (90.29%), Query Frame = 3 
Query:   57 FELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
            +ELPW+EKYRPL LS+IVGNE T+ RLE+F+++GN+PN+IIAGPPG+GKTTSILCLARA+LG T K+AVLELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRYTKL+D+++LARL+++++ E V  TDDGLEAI+FTAQGDMRQA+NN++ T
Sbjct:   37 YELPWVEKYRPLKLSEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPTMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMDVVEKERVQCTDDGLEAIVFTAQGDMRQALNNLQST 242

HSP 2 Score: 142.51 bits (358), Expect = 2.357e-36
Identity = 66/111 (59.46%), Postives = 84/111 (75.68%), Query Frame = 2 
Query: 1328 FQGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASA 1660
            F GFG V S NVFKVCDEPHPLL+K ML++CV +  +EA+K + +L   GYSPEDIIG IFRV K    +PE+LKL FIKEIG  HM+I +G+ + LQ+AGL+ RLC+ +A
Sbjct:  243 FAGFGFVNSTNVFKVCDEPHPLLVKEMLQHCVNANIDEAYKVVAHLWKLGYSPEDIIGNIFRVCKTFQ-MPEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTA 352
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Xenopus
Match: prokr1 (prokineticin receptor 1 [Source:Xenbase;Acc:XB-GENE-920239])

HSP 1 Score: 338.191 bits (866), Expect = 7.886e-108
Identity = 155/206 (75.24%), Postives = 186/206 (90.29%), Query Frame = 3 
Query:   57 FELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
            +ELPW+EKYRPL LS+IVGNE T+ RLE+F+++GN+PN+IIAGPPG+GKTTSILCLARA+LG T K+AVLELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRYTKL+D+++LARL+++++ E V  TDDGLEAI+FTAQGDMRQA+NN++ T
Sbjct:   39 YELPWVEKYRPLKLSEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPTMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMDVVEKERVQCTDDGLEAIVFTAQGDMRQALNNLQST 244

HSP 2 Score: 142.895 bits (359), Expect = 1.833e-36
Identity = 66/111 (59.46%), Postives = 84/111 (75.68%), Query Frame = 2 
Query: 1328 FQGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASA 1660
            F GFG V S NVFKVCDEPHPLL+K ML++CV +  +EA+K + +L   GYSPEDIIG IFRV K    +PE+LKL FIKEIG  HM+I +G+ + LQ+AGL+ RLC+ +A
Sbjct:  245 FAGFGFVNSTNVFKVCDEPHPLLVKEMLQHCVNANIDEAYKVVAHLWKLGYSPEDIIGNIFRVCKTFQ-MPEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTA 354
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Xenopus
Match: prokr1 (prokineticin receptor 1 [Source:Xenbase;Acc:XB-GENE-920239])

HSP 1 Score: 330.102 bits (845), Expect = 3.389e-105
Identity = 151/201 (75.12%), Postives = 180/201 (89.55%), Query Frame = 3 
Query:   57 FELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAIN 659
            +ELPW+EKYRPL LS+IVGNE T+ RLE+F+++GN+PN+IIAGPPG+GKTTSILCLARA+LG T K+AVLELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRYTKL+D+++LARL+++++ E V  TDDGLEAI+FTAQGDMRQ  +
Sbjct:   29 YELPWVEKYRPLKLSEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPTMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMDVVEKERVQCTDDGLEAIVFTAQGDMRQVCD 229

HSP 2 Score: 124.79 bits (312), Expect = 1.415e-30
Identity = 56/101 (55.45%), Postives = 77/101 (76.24%), Query Frame = 2 
Query: 1358 NVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASA 1660
            ++ +VCDEPHPLL+K ML++CV +  +EA+K + +L   GYSPEDIIG IFRV K    +PE+LKL FIKEIG  HM+I +G+ + LQ+AGL+ RLC+ +A
Sbjct:  223 DMRQVCDEPHPLLVKEMLQHCVNANIDEAYKVVAHLWKLGYSPEDIIGNIFRVCKTFQ-MPEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTA 322
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Mouse
Match: Rfc2 (replication factor C (activator 1) 2 [Source:MGI Symbol;Acc:MGI:1341868])

HSP 1 Score: 340.117 bits (871), Expect = 7.899e-109
Identity = 156/209 (74.64%), Postives = 185/209 (88.52%), Query Frame = 3 
Query:   48 GNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
              H+ELPW+EKYRPL L++IVGNE T+ RLE+F+++GN+PN+IIAGPPG+GKTTSILCLARA+LG   K+AVLELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRYTKL+D+++L RL+ +I+ E V YTDDGLEAIIFTAQGDMRQA+NN++ T
Sbjct:   26 AGHYELPWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQST 234

HSP 2 Score: 138.272 bits (347), Expect = 4.808e-35
Identity = 62/112 (55.36%), Postives = 85/112 (75.89%), Query Frame = 2 
Query: 1328 FQGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASAA 1663
            F GFG + S+NVFKVCDEPHPLL+K M+++CV++  +EA+K L +L   GYSPED+IG IFRV K    + E+LKL FIKEIG  HM++ +G+ + LQ+AGL+ RLC+ + A
Sbjct:  235 FSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFP-MAEYLKLEFIKEIGYTHMKVAEGVNSLLQMAGLLARLCQKTMA 345
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Mouse
Match: Rfc5 (replication factor C (activator 1) 5 [Source:MGI Symbol;Acc:MGI:1919401])

HSP 1 Score: 182.956 bits (463), Expect = 9.199e-51
Identity = 86/205 (41.95%), Postives = 138/205 (67.32%), Query Frame = 3 
Query:   63 LPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGET-YKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
            LPW+EKYRP  L+D++ ++  +  ++ F  +  LP+L++ GPPG+GKT++IL  A+ +  +  + + VLELNAS+DRGI++VR  I SFA  +     G  K++ILDE D+MT+ AQ ALRR +E ++  TRF   CN  SKII  +QSRC   R+  L+   ++ RL  +++ E+V  ++DG++A++  + GDMR+A+N ++ T
Sbjct:   19 LPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGF-KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQST 222
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Mouse
Match: Rfc4 (replication factor C (activator 1) 4 [Source:MGI Symbol;Acc:MGI:2146571])

HSP 1 Score: 179.489 bits (454), Expect = 3.301e-49
Identity = 94/215 (43.72%), Postives = 138/215 (64.19%), Query Frame = 3 
Query:   63 LPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLG-ETYKNAVLELNASNDRGIEVVRNKIKSFARNKVN------LPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTHKVT 686
            +PW+EKYRP  + ++   +  +  L    +  +LPNL+  GPPG+GKT++IL  AR + G E ++  VLELNAS++RGI+VVR K+K+FA+  V+       P    KI+ILDE DSMT  AQ ALRRTME  S TTRF   CN  S+IIEP+ SRC+  R+  LSD     RLL+I + E+V   ++ +  ++  ++GD+R+AI  ++   ++T
Sbjct:   38 VPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLT 252
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Mouse
Match: Rfc4 (replication factor C (activator 1) 4 [Source:MGI Symbol;Acc:MGI:2146571])

HSP 1 Score: 179.489 bits (454), Expect = 3.986e-49
Identity = 94/215 (43.72%), Postives = 138/215 (64.19%), Query Frame = 3 
Query:   63 LPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLG-ETYKNAVLELNASNDRGIEVVRNKIKSFARNKVN------LPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTHKVT 686
            +PW+EKYRP  + ++   +  +  L    +  +LPNL+  GPPG+GKT++IL  AR + G E ++  VLELNAS++RGI+VVR K+K+FA+  V+       P    KI+ILDE DSMT  AQ ALRRTME  S TTRF   CN  S+IIEP+ SRC+  R+  LSD     RLL+I + E+V   ++ +  ++  ++GD+R+AI  ++   ++T
Sbjct:   38 VPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLT 252
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Mouse
Match: Rfc4 (replication factor C (activator 1) 4 [Source:MGI Symbol;Acc:MGI:2146571])

HSP 1 Score: 167.933 bits (424), Expect = 1.215e-46
Identity = 88/183 (48.09%), Postives = 119/183 (65.03%), Query Frame = 3 
Query:   63 LPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLG-ETYKNAVLELNASNDRGIEVVRNKIKSFARNKVN------LPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESV 590
            +PW+EKYRP  + ++   +  +  L    +  +LPNL+  GPPG+GKT++IL  AR + G E ++  VLELNAS++RGI+VVR K+K+FA+  V+       P    KI+ILDE DSMT  AQ ALRRTME  S TTRF   CN  S+IIEP+ SRC+  R+  LSD     RLL+I + E+V
Sbjct:   38 VPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENV 220
[Close]
BLAST of replication factor C subunit 2 vs. UniProt/SwissProt
Match: sp|P53033|RFC2_CHICK (Replication factor C subunit 2 OS=Gallus gallus OX=9031 GN=RFC2 PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 4.432e-110
Identity = 160/208 (76.92%), Postives = 187/208 (89.90%), Query Frame = 3 
Query:   54 HFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTH 677
            H+ELPW+EKYRPL L ++VGNE T+ RLE+F+K+GN+PN+IIAGPPG+GKTTSILCLARA+LG   K+AVLELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRYTKL+DS+ILARLL+I++ E V YTDDGLEAIIFTAQGDMRQA+NN++ T+
Sbjct:   38 HYELPWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDGLEAIIFTAQGDMRQALNNLQSTY 245

HSP 2 Score: 142.124 bits (357), Expect = 1.838e-35
Identity = 63/112 (56.25%), Postives = 86/112 (76.79%), Query Frame = 2 
Query: 1328 FQGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASAA 1663
            + GFG + S+NVFKVCDEPHPLL+K M+++C+ +  +EA+K L +L   GYSPED+IG IFRV K    +PE+LKL FIKEIG  HM+I +G+ + LQ+AGL+ RLC+ +AA
Sbjct:  245 YSGFGFINSENVFKVCDEPHPLLVKEMIQHCINANIDEAYKILAHLWRLGYSPEDVIGNIFRVCKTFQ-MPEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTAA 355
[Close]
BLAST of replication factor C subunit 2 vs. UniProt/SwissProt
Match: sp|Q05B83|RFC2_BOVIN (Replication factor C subunit 2 OS=Bos taurus OX=9913 GN=RFC2 PE=2 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 2.590e-108
Identity = 158/210 (75.24%), Postives = 186/210 (88.57%), Query Frame = 3 
Query:   48 GNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTH 677
              H+ELPW+EKYRP+ L++IVGNE T+ RLE+F+++GN+PN+IIAGPPG+GKTTSILCLARA+LG   K+AVLELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRYTKL+D +ILARLL +I+ E V YTDDGLEAIIFTAQGDMRQA+NN++ T+
Sbjct:   29 AGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLSVIEKEKVQYTDDGLEAIIFTAQGDMRQALNNLQSTY 238

HSP 2 Score: 137.502 bits (345), Expect = 6.037e-34
Identity = 63/112 (56.25%), Postives = 84/112 (75.00%), Query Frame = 2 
Query: 1328 FQGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASAA 1663
            + GFG + S+NVFKVCDEPHPLL+K M+++CV +  +EA+K L +L   GYSPEDIIG IFRV K    + E+LKL FIKEIG  HM+I +G+ + LQ+AGL+ RLC+ + A
Sbjct:  238 YSGFGFINSENVFKVCDEPHPLLVKEMIQHCVSADIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQ-MAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMA 348
[Close]
BLAST of replication factor C subunit 2 vs. UniProt/SwissProt
Match: sp|Q9WUK4|RFC2_MOUSE (Replication factor C subunit 2 OS=Mus musculus OX=10090 GN=Rfc2 PE=1 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 5.525e-108
Identity = 156/209 (74.64%), Postives = 185/209 (88.52%), Query Frame = 3 
Query:   48 GNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
              H+ELPW+EKYRPL L++IVGNE T+ RLE+F+++GN+PN+IIAGPPG+GKTTSILCLARA+LG   K+AVLELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRYTKL+D+++L RL+ +I+ E V YTDDGLEAIIFTAQGDMRQA+NN++ T
Sbjct:   26 AGHYELPWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQST 234

HSP 2 Score: 138.272 bits (347), Expect = 3.363e-34
Identity = 62/112 (55.36%), Postives = 85/112 (75.89%), Query Frame = 2 
Query: 1328 FQGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASAA 1663
            F GFG + S+NVFKVCDEPHPLL+K M+++CV++  +EA+K L +L   GYSPED+IG IFRV K    + E+LKL FIKEIG  HM++ +G+ + LQ+AGL+ RLC+ + A
Sbjct:  235 FSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFP-MAEYLKLEFIKEIGYTHMKVAEGVNSLLQMAGLLARLCQKTMA 345
[Close]
BLAST of replication factor C subunit 2 vs. UniProt/SwissProt
Match: sp|Q641W4|RFC2_RAT (Replication factor C subunit 2 OS=Rattus norvegicus OX=10116 GN=Rfc2 PE=2 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 7.918e-108
Identity = 155/207 (74.88%), Postives = 186/207 (89.86%), Query Frame = 3 
Query:   54 HFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
            H+ELPW+EKYRP+ L++IVGNE T+ RLE+F+++GN+PN+IIAGPPG+GKTTSILCLARA+LG   K+AVLELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRYTKL+D+++L+RL+ +I+ E V YTDDGLEAIIFTAQGDMRQA+NN++ T
Sbjct:   28 HYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQST 234

HSP 2 Score: 138.272 bits (347), Expect = 2.973e-34
Identity = 62/112 (55.36%), Postives = 85/112 (75.89%), Query Frame = 2 
Query: 1328 FQGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASAA 1663
            F GFG + S+NVFKVCDEPHPLL+K M+++CV++  +EA+K L +L   GYSPED+IG IFRV K    + E+LKL FIKEIG  HM++ +G+ + LQ+AGL+ RLC+ + A
Sbjct:  235 FSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFP-MAEYLKLEFIKEIGYTHMKVAEGVNSLLQMAGLLARLCQKTMA 345
[Close]
BLAST of replication factor C subunit 2 vs. UniProt/SwissProt
Match: sp|P35250|RFC2_HUMAN (Replication factor C subunit 2 OS=Homo sapiens OX=9606 GN=RFC2 PE=1 SV=3)

HSP 1 Score: 337.035 bits (863), Expect = 9.384e-107
Identity = 155/209 (74.16%), Postives = 185/209 (88.52%), Query Frame = 3 
Query:   48 GNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
              H+ELPW+EKYRP+ L++IVGNE T+ RLE+F+++GN+PN+IIAGPPG+GKTTSILCLARA+LG   K+A+LELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRYTKL+D++IL RL+ +I+ E V YTDDGLEAIIFTAQGDMRQA+NN++ T
Sbjct:   31 AGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQST 239

HSP 2 Score: 138.272 bits (347), Expect = 3.434e-34
Identity = 64/112 (57.14%), Postives = 84/112 (75.00%), Query Frame = 2 
Query: 1328 FQGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASAA 1663
            F GFG + S+NVFKVCDEPHPLL+K M+++CV +  +EA+K L +L   GYSPEDIIG IFRV K    + E+LKL FIKEIG  HM+I +G+ + LQ+AGL+ RLC+ + A
Sbjct:  240 FSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQ-MAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMA 350
[Close]
BLAST of replication factor C subunit 2 vs. TrEMBL
Match: I1ZI83 (Replication factor C subunit 2 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 465.692 bits (1197), Expect = 4.476e-154
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 3 
Query:    3 VFQKTKNLLMGENLEGNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTHK 680
            VFQKTKNLLMGENLEGNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTHK
Sbjct:    2 VFQKTKNLLMGENLEGNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTHK 227

HSP 2 Score: 236.498 bits (602), Expect = 1.216e-66
Identity = 113/118 (95.76%), Postives = 115/118 (97.46%), Query Frame = 2 
Query: 1322 LAFQGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASAAFGNK 1675
            L  +GFGSVTS+NVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRAS AFGNK
Sbjct:  224 LTHKGFGSVTSENVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASVAFGNK 341
[Close]
BLAST of replication factor C subunit 2 vs. TrEMBL
Match: G1MUA0 (Replication factor C subunit 2 OS=Meleagris gallopavo OX=9103 GN=RFC2 PE=4 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.338e-108
Identity = 161/210 (76.67%), Postives = 188/210 (89.52%), Query Frame = 3 
Query:   48 GNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTH 677
            G H+ELPW+EKYRPL L ++VGNE T+ RLE+F+K+GN+PN+IIAGPPG+GKTTSILCLARA+LG   K+AVLELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRYTKL+DS+ILARLL+I++ E V YTDDGLEAIIFTAQGDMRQA+NN++ T+
Sbjct:   37 GGHYELPWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDGLEAIIFTAQGDMRQALNNLQSTY 246

HSP 2 Score: 142.124 bits (357), Expect = 6.005e-33
Identity = 63/112 (56.25%), Postives = 86/112 (76.79%), Query Frame = 2 
Query: 1328 FQGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASAA 1663
            + GFG + S+NVFKVCDEPHPLL+K M+++C+ +  +EA+K L +L   GYSPED+IG IFRV K    +PE+LKL FIKEIG  HM+I +G+ + LQ+AGL+ RLC+ +AA
Sbjct:  246 YSGFGFINSENVFKVCDEPHPLLVKEMIQHCINANIDEAYKILAHLWRLGYSPEDVIGNIFRVCKTFQ-MPEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTAA 356
[Close]
BLAST of replication factor C subunit 2 vs. TrEMBL
Match: A0A1D5PYS3 (Replication factor C subunit 2 OS=Gallus gallus OX=9031 GN=RFC2 PE=4 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 4.688e-108
Identity = 160/208 (76.92%), Postives = 187/208 (89.90%), Query Frame = 3 
Query:   54 HFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTH 677
            H+ELPW+EKYRPL L ++VGNE T+ RLE+F+K+GN+PN+IIAGPPG+GKTTSILCLARA+LG   K+AVLELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRYTKL+DS+ILARLL+I++ E V YTDDGLEAIIFTAQGDMRQA+NN++ T+
Sbjct:   38 HYELPWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDGLEAIIFTAQGDMRQALNNLQSTY 245

HSP 2 Score: 89.3521 bits (220), Expect = 2.616e-15
Identity = 48/112 (42.86%), Postives = 64/112 (57.14%), Query Frame = 2 
Query: 1328 FQGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASAA 1663
            + GFG + S+NVFK+                           L +L   GYSPED+IG IFRV K    +PE+LKL FIKEIG  HM+I +G+ + LQ+AGL+ RLC+ +AA
Sbjct:  245 YSGFGFINSENVFKI---------------------------LAHLWRLGYSPEDVIGNIFRVCKTFQ-MPEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTAA 328
[Close]
BLAST of replication factor C subunit 2 vs. TrEMBL
Match: A0A3L8S3B6 (AAA domain-containing protein OS=Chloebia gouldiae OX=44316 GN=DV515_00012792 PE=4 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 5.908e-108
Identity = 160/208 (76.92%), Postives = 188/208 (90.38%), Query Frame = 3 
Query:   54 HFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTH 677
            H+ELPW+EKYRP+ LS+IVGNE T+ RLE+F+K+GN+PN+IIAGPPG+GKTTSILCLARA+LG   K+AVLELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRYTKL+D++ILARLL+I++ E V YTDDGLEAIIFTAQGDMRQA+NN++ T+
Sbjct:   35 HYELPWVEKYRPMKLSEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLKIVEKEDVAYTDDGLEAIIFTAQGDMRQALNNLQSTY 242

HSP 2 Score: 142.124 bits (357), Expect = 4.560e-33
Identity = 63/112 (56.25%), Postives = 86/112 (76.79%), Query Frame = 2 
Query: 1328 FQGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASAA 1663
            + GFG + S+NVFKVCDEPHPLL+K M+++C+ +  +EA+K L +L   GYSPED+IG IFRV K    +PE+LKL FIKEIG  HM+I +G+ + LQ+AGL+ RLC+ +AA
Sbjct:  242 YSGFGFINSENVFKVCDEPHPLLVKEMIQHCINANIDEAYKILAHLWRLGYSPEDVIGNIFRVCKTFQ-MPEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTAA 352
[Close]
BLAST of replication factor C subunit 2 vs. TrEMBL
Match: U3IPH5 (Replication factor C subunit 2 OS=Anas platyrhynchos platyrhynchos OX=8840 GN=RFC2 PE=4 SV=2)

HSP 1 Score: 345.895 bits (886), Expect = 1.194e-107
Identity = 160/208 (76.92%), Postives = 187/208 (89.90%), Query Frame = 3 
Query:   54 HFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTH 677
            H+ELPW+EKYRP+ L +IVGNE T+ RLE+F+K+GN+PN+IIAGPPG+GKTTSILCLARA+LG   K+AVLELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRYTKL+DS+ILARLL+I++ E V YTDDGLEAIIFTAQGDMRQA+NN++ T+
Sbjct:   31 HYELPWVEKYRPMKLCEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDGLEAIIFTAQGDMRQALNNLQSTY 238

HSP 2 Score: 142.51 bits (358), Expect = 3.913e-33
Identity = 63/112 (56.25%), Postives = 86/112 (76.79%), Query Frame = 2 
Query: 1328 FQGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASAA 1663
            + GFG + S+NVFKVCDEPHPLL+K M+++C+ +  +EA+K L +L   GYSPED+IG IFRV K    +PE+LKL FIKEIG  HM+I +G+ + LQ+AGL+ RLC+ +AA
Sbjct:  238 YSGFGFINSENVFKVCDEPHPLLVKEMIQHCINANIDEAYKILAHLWRLGYSPEDVIGNIFRVCKTFQ-MPEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTAA 348
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Cavefish
Match: rfc2 (replication factor C (activator 1) 2 [Source:ZFIN;Acc:ZDB-GENE-050306-29])

HSP 1 Score: 328.176 bits (840), Expect = 9.977e-104
Identity = 150/210 (71.43%), Postives = 185/210 (88.10%), Query Frame = 3 
Query:   48 GNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTH 677
             + +ELPW+EKYRP+ L++IVGNE T+ RLE+F+++GN+PN+IIAGPPG+GKTTSILCLARA+LG   K+AVLELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRY+KL D +I+ RL+E+++ E++  T+DGLEAIIFTAQGDMRQA+NN++ T+
Sbjct:   67 ASSYELPWVEKYRPMKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLMEVVEKENLHTTNDGLEAIIFTAQGDMRQALNNLQSTN 276

HSP 2 Score: 144.05 bits (362), Expect = 9.027e-37
Identity = 66/110 (60.00%), Postives = 85/110 (77.27%), Query Frame = 2 
Query: 1334 GFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASAA 1663
            GFG + S+NVFKVCDEPHPLL+K+MLE+CV +  +EA+K +  L A GYSPEDIIG IFRV K    + E+LKL +IKEIG  HM+I +G+ + LQ+AGL+GRLC  +AA
Sbjct:  278 GFGFINSENVFKVCDEPHPLLVKNMLEHCVNANIDEAYKVIEQLWALGYSPEDIIGNIFRVCKTFQ-MAEYLKLEYIKEIGYTHMKIAEGVNSLLQMAGLLGRLCSKTAA 386
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Cavefish
Match: rfc2 (replication factor C (activator 1) 2 [Source:ZFIN;Acc:ZDB-GENE-050306-29])

HSP 1 Score: 327.02 bits (837), Expect = 3.860e-103
Identity = 150/210 (71.43%), Postives = 185/210 (88.10%), Query Frame = 3 
Query:   48 GNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTH 677
             + +ELPW+EKYRP+ L++IVGNE T+ RLE+F+++GN+PN+IIAGPPG+GKTTSILCLARA+LG   K+AVLELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRY+KL D +I+ RL+E+++ E++  T+DGLEAIIFTAQGDMRQA+NN++ T+
Sbjct:   67 ASSYELPWVEKYRPMKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLMEVVEKENLHTTNDGLEAIIFTAQGDMRQALNNLQSTN 276

HSP 2 Score: 103.219 bits (256), Expect = 5.271e-23
Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = 2 
Query: 1334 GFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIK 1567
            GFG + S+NVFKVCDEPHPLL+K+MLE+CV +  +EA+K +  L A GYSPEDIIG IFRV K    + E+LKL +IK
Sbjct:  278 GFGFINSENVFKVCDEPHPLLVKNMLEHCVNANIDEAYKVIEQLWALGYSPEDIIGNIFRVCKTFQ-MAEYLKLEYIK 354
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Cavefish
Match: rfc2 (replication factor C (activator 1) 2 [Source:ZFIN;Acc:ZDB-GENE-050306-29])

HSP 1 Score: 257.299 bits (656), Expect = 4.063e-78
Identity = 124/210 (59.05%), Postives = 157/210 (74.76%), Query Frame = 3 
Query:   48 GNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTH 677
             + +ELPW+EKYRP+ L++IVGNE T+ RLE+F+++GN+PN+IIAGPPG+GKTTSILCLARA+LG   K+AVLELNASND                                  SMT+GAQQALRRTME+YS TTRFA ACN S KIIEPIQSRCA+LRY+KL D +I+ RL+E+++ E++  T+DGLEAIIFTAQGDMRQA+NN++ T+
Sbjct:   30 ASSYELPWVEKYRPMKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAMKDAVLELNASND----------------------------------SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLMEVVEKENLHTTNDGLEAIIFTAQGDMRQALNNLQSTN 205

HSP 2 Score: 144.05 bits (362), Expect = 1.744e-37
Identity = 66/110 (60.00%), Postives = 85/110 (77.27%), Query Frame = 2 
Query: 1334 GFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASAA 1663
            GFG + S+NVFKVCDEPHPLL+K+MLE+CV +  +EA+K +  L A GYSPEDIIG IFRV K    + E+LKL +IKEIG  HM+I +G+ + LQ+AGL+GRLC  +AA
Sbjct:  207 GFGFINSENVFKVCDEPHPLLVKNMLEHCVNANIDEAYKVIEQLWALGYSPEDIIGNIFRVCKTFQ-MAEYLKLEYIKEIGYTHMKIAEGVNSLLQMAGLLGRLCSKTAA 315
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Cavefish
Match: rfc4 (replication factor C (activator 1) 4 [Source:ZFIN;Acc:ZDB-GENE-040824-3])

HSP 1 Score: 201.83 bits (512), Expect = 4.076e-57
Identity = 104/225 (46.22%), Postives = 149/225 (66.22%), Query Frame = 3 
Query:   33 GENLEGNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLG-ETYKNAVLELNASNDRGIEVVRNKIKSFARNKV--NLPDGMH----KIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTHKVT 686
            G + E     +PW+EKYRP  + ++   E  +  L+   +  +LPNL+  GPPG+GKT++IL  AR + G E Y+  VLELNAS++RGI+VVR K+K+FA+  V    PDG H    KIIILDE DSMT  AQ ALRRTME  S TTRF   CN  S+IIEP+ SRC+  R+  L++     RL+EI + E++ YT +G+EA++  ++GD+R+AI  ++ T +++
Sbjct:   39 GSSGEKRQKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKNFAQLTVAGKRPDGKHCPPFKIIILDEADSMTNAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLANDIQRERLVEICEKENLKYTKEGIEALVKVSEGDLRKAITLLQSTARLS 263
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Cavefish
Match: rfc5 (replication factor C subunit 5 [Source:NCBI gene;Acc:103039707])

HSP 1 Score: 189.119 bits (479), Expect = 5.159e-53
Identity = 89/206 (43.20%), Postives = 138/206 (66.99%), Query Frame = 3 
Query:   63 LPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGET-YKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTH 677
            LPW+EKYRP  L D++ ++  +  ++ F  +  LP+L+  GPPG+GKT++IL  A+ +  +  + + VLELNAS+DRGI+VVR  I SFA  +     G  K++ILDE D+MT+ AQ ALRR +E ++  TRF   CN  SKII  +QSRC   R+  LS ++++ RL  +I+ E++  + DG++AI+  + GDMR+++N ++ TH
Sbjct:   14 LPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACAKQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGF-KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQENIDISPDGMKAIVTLSTGDMRRSLNILQSTH 218
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008618.1 (pep scaffold:Pmarinus_7.0:GL477502:54132:62470:-1 gene:ENSPMAG00000007794.1 transcript:ENSPMAT00000008618.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 327.405 bits (838), Expect = 1.740e-104
Identity = 153/210 (72.86%), Postives = 183/210 (87.14%), Query Frame = 3 
Query:   57 FELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIA---GPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTH 677
            +ELPW+EKYRPL L +IVGNE T+ RLE+F+++GN+PN+IIA   GPPG+GKTTSILCLARA+LG   ++AVLELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS +TRFA ACN S KIIEPIQSRCA+LRY++L+DS++L+RLLE+   E V  TDDGLEAIIFTAQGDMRQA+NN++ TH
Sbjct:   46 YELPWVEKYRPLKLKEIVGNEETVSRLEVFAREGNVPNIIIAECQGPPGTGKTTSILCLARALLGPAVRDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIILDEADSMTDGAQQALRRTMEIYSKSTRFALACNASDKIIEPIQSRCAVLRYSRLTDSQVLSRLLEVCDHECVQRTDDGLEAIIFTAQGDMRQALNNLQSTH 255

HSP 2 Score: 136.732 bits (343), Expect = 3.576e-35
Identity = 63/110 (57.27%), Postives = 83/110 (75.45%), Query Frame = 2 
Query: 1334 GFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASAA 1663
            GFG V S+NVFKVCDEPHPLL+K M+ +CV    ++A+K +++L   GYSPEDIIG IFRV K +  + E+LKL F+KEIG  HMRIV+G+ + LQ+AGL+ RLC  + A
Sbjct:  257 GFGYVNSENVFKVCDEPHPLLVKEMIGHCVSGNIDQAYKIMSHLWKLGYSPEDIIGNIFRVCKTY-AMAEYLKLEFLKEIGLTHMRIVEGVNSLLQMAGLLARLCNKTVA 365
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Sea Lamprey
Match: rfc5 (replication factor C (activator 1) 5 [Source:ZFIN;Acc:ZDB-GENE-040907-1])

HSP 1 Score: 189.119 bits (479), Expect = 1.118e-53
Identity = 99/222 (44.59%), Postives = 140/222 (63.06%), Query Frame = 3 
Query:   30 MGENLEGNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGET-YKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRR------TMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
            MGE    N   LPW+EKYRP VL +++ ++  +  ++ F  +  LP+L+  GPPG+GKT++IL  AR + GE    + VLELNAS+DRGI+VVR  I SFA  +     G +K++ILDE D+MT+ AQ ALRR       ME ++  TRF   CN  S+II  +QSRC   R+  LS   ++ RLL +I  E V  TDDG+ A++  + GDMR+A+N ++ T
Sbjct:    1 MGERAPRN---LPWVEKYRPRVLDELISHKDILTTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYGEKEAASMVLELNASDDRGIDVVRGPILSFASTRTIFKKG-YKLVILDEADAMTQDAQNALRRGFHPPAVMEKFTENTRFCLICNYLSRIIPALQSRCTRFRFGPLSSDLMVPRLLHVIAEEQVDVTDDGMNALVTLSNGDMRRALNMLQST 218
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Sea Lamprey
Match: rfc4 (replication factor C (activator 1) 4 [Source:ZFIN;Acc:ZDB-GENE-040824-3])

HSP 1 Score: 158.688 bits (400), Expect = 1.791e-43
Identity = 82/176 (46.59%), Postives = 113/176 (64.20%), Query Frame = 3 
Query:  162 LPNLIIAGPPGSGKTTSILCLARAMLG-ETYKNAVLELNASNDRGIEVVRNKIKSFAR------NKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVE 668
            LPNL+  GPPG+GKT++IL  AR + G E Y   VLELNAS++RGI+VVR+K+K+FA+       K   P    KI++LDE DSMT  AQ ALRRTME  + TTRF   CN  S+IIEP+ SRC+  R+  LSD+    R+  +   E +    + L  ++  A+GD+R+AI  ++
Sbjct:    1 LPNLLFYGPPGTGKTSAILAAARDLFGPELYAQRVLELNASDERGIQVVRHKVKNFAQLTASSTRKDGSPCPPFKIVVLDEADSMTSAAQAALRRTMERETKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDAAQEQRVRHVCDQEGLKIEQEALTELVKVAEGDLRRAITMLQ 176
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Sea Lamprey
Match: rfc3 (replication factor C (activator 1) 3 [Source:ZFIN;Acc:ZDB-GENE-020809-3])

HSP 1 Score: 103.99 bits (258), Expect = 3.506e-24
Identity = 68/225 (30.22%), Postives = 112/225 (49.78%), Query Frame = 3 
Query:   69 WLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLE---LNASNDRGIE-----------------------VVRNKIKSFARNKVNLPDGMH---KIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAI 656
            W++KYRP  LS +  ++    +L+   + G+ P+L++ GP G+GK T I+CL R + G   +   +E   +   + + IE                       VV+  IK+ A+++  L  G     K+++L E D +T+ AQ ALRRTME Y +T R    CN +SK+I PI+SRC  LR    +  E+   L  + K E +    +    I   +  ++R+A+
Sbjct:    4 WVDKYRPTSLSKVDFHKEQAIQLKNLVQGGDFPHLLVYGPSGAGKKTRIMCLLRELYGAGVEKLRIEHQTVTTPSKKKIEISTIASNYHIEVTPSDAGNSDRVVVQELIKTVAQSQ-QLESGTQRDFKVVLLSEVDRLTKDAQHALRRTMEKYMSTCRLILMCNSTSKVIAPIRSRCLGLRVPAPTVDEVCQVLAIVCKKEGLSLPPELARRIAEKSNRNLRKAL 227
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Sea Lamprey
Match: rfc1 (replication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99])

HSP 1 Score: 49.6766 bits (117), Expect = 3.499e-6
Identity = 57/266 (21.43%), Postives = 109/266 (40.98%), Query Frame = 3 
Query:   12 KTKNLLMGENLEGNHFELPWLEKYRPLVLSDIVGNEG-------------------------------TIKRLEIFSKQ--GNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMH----------KIIILDEGDSMTEGAQQALRRTMEMYS----NTTRFAFACNDSSKI-IEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNV 665
            +T++   G   E     L W+++YRP  L +I+G +G                               ++ R     K     L   +++GPPG GKTT+   + +  LG ++    +ELNAS+ R    ++N++ +  RN  ++    H           ++++DE D M     +     ME+ +    +       CND +   I  + + C  LR+ +    +I   ++ +   E +      ++ II  A  D+RQ ++N+
Sbjct:  480 ETRSPRKGSGPEVGGDSLLWVDRYRPQSLKNIIGQQGDQSPANKLLRWLRAWHSNHGGGSGGGRKAAPSVGRFRFGGKDDGSGLKAALLSGPPGVGKTTTAALVCQE-LGLSF----VELNASDRRSKNSMKNEVATCLRN-TSIEGFYHGSTAQTVSDRHVLLMDEVDGMAGNEDRG--GIMELIALIKQSKVPVICMCNDRNHPKIRSLANYCFDLRFPRPRVEQIKGAMMSVAFKEGLKIPPAAMQEIILAANQDIRQVLHNL 737
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Yeast
Match: RFC4 (Subunit of heteropentameric Replication factor C (RF-C); which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon; relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000005454])

HSP 1 Score: 318.161 bits (814), Expect = 7.104e-102
Identity = 145/206 (70.39%), Postives = 179/206 (86.89%), Query Frame = 3 
Query:   57 FELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
             +LPW+EKYRP VLSDIVGN+ TI RL+  +K GN+P++II+G PG GKTTS+ CLA  +LG +Y + VLELNAS+DRGI+VVRN+IK FA+ K++LP G HKI+ILDE DSMT GAQQALRRTME+YSN+TRFAFACN S+KIIEP+QSRCA+LRY+KLSD ++L RLL+IIK+E V YT+DGLEAIIFTA+GDMRQAINN++ T
Sbjct:    7 LQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQST 212

HSP 2 Score: 91.2781 bits (225), Expect = 2.079e-20
Identity = 47/105 (44.76%), Postives = 68/105 (64.76%), Query Frame = 2 
Query: 1334 GFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSL-NNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRL 1645
            G G V +DNVFK+ D PHPL++K ML   + S   ++ + L  +L   GYS  DI+   FRVTKN   + E ++L  IKEIG  HMRI++G+ T+LQLA ++ ++
Sbjct:  215 GHGLVNADNVFKIVDSPHPLIVKKML---LASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKI 316
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Yeast
Match: RFC2 (Subunit of heteropentameric Replication factor C (RF-C); RF-C is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon [Source:SGD;Acc:S000003829])

HSP 1 Score: 178.333 bits (451), Expect = 6.733e-50
Identity = 93/207 (44.93%), Postives = 129/207 (62.32%), Query Frame = 3 
Query:   66 PWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLG-ETYKNAVLELNASNDRGIEVVRNKIKSFARNKV---------NLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAI 656
            PW+EKYRP  L ++   +  +  L+   K  NLP+++  GPPG+GKT++IL L + + G +  K+ +LELNAS++RGI +VR K+K+FAR  V         N P   +KIIILDE DSMT  AQ ALRRTME YS  TRF   CN  ++II+P+ SRC+  R+  L  S  + RL  I + E+V   D  LE I+  + GD+R+ I
Sbjct:   26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGI 232
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Yeast
Match: RFC3 (Subunit of heteropentameric Replication factor C (RF-C); which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon; relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000005234])

HSP 1 Score: 177.178 bits (448), Expect = 1.147e-49
Identity = 87/199 (43.72%), Postives = 123/199 (61.81%), Query Frame = 3 
Query:   63 LPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAIN 659
            LPW+EKYRP  L ++ G    I  +  F  +G LP+L+  GPPG+GKT++I+ LAR + G+ Y N VLELNAS+DRGI+VVRN+IK FA  +     G  K+IILDE D+MT  AQ ALRR +E Y+  TRF    N + K+   + SRC   R+  L    I  R+  ++  E +  + +  +A+I  + GDMR+ +N
Sbjct:   13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGF-KLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLN 210
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Yeast
Match: RFC5 (Subunit of heteropentameric Replication factor C (RF-C); RF-C is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon [Source:SGD;Acc:S000000291])

HSP 1 Score: 105.145 bits (261), Expect = 8.467e-25
Identity = 77/235 (32.77%), Postives = 118/235 (50.21%), Query Frame = 3 
Query:   69 WLEKYRPLVLSDIVGNEGTIKRLEIFSKQG-NLPNLIIAGPPGSGKTTSILCLARAMLGE-------------TYKNAVLELNA---------------SNDRGI------EVVRNKIKSFARNKVNLPDGM---HKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESV-IYTDDGLEAIIFTAQGDMRQAI 656
            W++KYRP  L+ +  NE     L+  S Q  +LP+L++ GP G+GK T  + L  ++ G              T  N  LELN                +NDR +      EV + +   F  +K    DG+   +K +I++E +S+T+ AQ ALRRTME YS   R    C+  S II PI+SRC ++R    SDSEI   L +++  E + + T D L+ I   + G++R ++
Sbjct:    4 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSK----DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSL 234
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Yeast
Match: RFC1 (Subunit of heteropentameric Replication factor C (RF-C); RF-C is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon [Source:SGD;Acc:S000005743])

HSP 1 Score: 65.0846 bits (157), Expect = 4.034e-11
Identity = 59/228 (25.88%), Postives = 107/228 (46.93%), Query Frame = 3 
Query:   69 WLEKYRPLVLSDIVGNEGTIKRLEIF------SKQGNLPN-----------LIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKS----------FARNK--VNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNT-TRFAFACNDSS-KIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAIN 659
            W  KY P  L  + GN+G++ +L+ +      SK+ +  +            ++ GPPG GKTT+   +A+ +  +     +LE NAS+ R   ++   +K+          F  N+   NL +G H +II+DE D M+ G +  + +  +    T T     CN+ +   + P    C  +++ +   + I +RL+ I   E      + ++ +I T +GD+RQ IN
Sbjct:  298 WTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD-----ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNL-NGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVIN 519
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Nematostella
Match: EDO39385 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SA25])

HSP 1 Score: 329.331 bits (843), Expect = 1.509e-104
Identity = 154/207 (74.40%), Postives = 180/207 (86.96%), Query Frame = 3 
Query:   57 FELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTH 677
            FELPW+EKYRP  L +IVGNE T+ RLE+F++QGN+PN+IIAGPPG+GKTTSILCLARA+LG + K+AVLELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRRTME+YS TTRFA ACN S KIIE IQSRCA+LRYT+L+D+++L RLLEI   E V   DDGLEAIIFTA+GDMRQAINN++ T+
Sbjct:   51 FELPWVEKYRPTKLHEIVGNEETVSRLEVFAQQGNVPNIIIAGPPGTGKTTSILCLARALLGVSLKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNTSDKIIEAIQSRCAILRYTRLTDAQVLTRLLEICDKEQVPKVDDGLEAIIFTAEGDMRQAINNLQSTY 257

HSP 2 Score: 118.242 bits (295), Expect = 1.819e-28
Identity = 67/141 (47.52%), Postives = 80/141 (56.74%), Query Frame = 2 
Query: 1328 FQGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIK----------------------------------EIGEVHMRIVDGLTTHLQLAGLIGRLC 1648
            + GFG V S+NVFKVCDEPHPLLIK ML++C     +EA+K L++L   GYSPEDII  IFRV K    I EFLKL FIK                                  EIG  HMRIV+G+ + LQL+GL+ RLC
Sbjct:  257 YYGFGMVNSENVFKVCDEPHPLLIKEMLKSCSVGDIDEAYKVLSHLWNMGYSPEDIITNIFRVCKTAP-IAEFLKLEFIKVQKDEHLMKDIFVCINSPFIVQCRALGAGRIGEEEIGYTHMRIVEGVNSLLQLSGLLARLC 396
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Nematostella
Match: EDO40950 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S5R5])

HSP 1 Score: 189.119 bits (479), Expect = 3.405e-53
Identity = 101/220 (45.91%), Postives = 141/220 (64.09%), Query Frame = 3 
Query:   48 GNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLG-ETYKNAVLELNASNDRGIEVVRNKIKSFAR--NKVNLPDGM----HKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLL-EIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTHKV 683
            G     PW+EKYRP  + D+   E  +  L+   +  +LPNL+  GPPG+GKT++IL +AR + G E  K  VLELNAS++RGI+V+R+K+K+F++     + PDG      K++ILDE DSMT  AQ ALRRTME  + TTRF   CN  S+IIEP+ SRC+  R+  LS SEIL R L EI   E V   D  ++ +I  ++GDMR+AI  ++  H++
Sbjct:   26 GKQKSSPWVEKYRPKCVDDVAQQEEVVMVLKKSLEGADLPNLLFYGPPGTGKTSTILAVARELYGHEMLKQRVLELNASDERGIQVIRDKVKTFSQLSASASRPDGKPCPPFKLVILDEADSMTPSAQAALRRTMEKQTKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS-SEILERRLKEICVKEEVNCEDKAIDEVIKISEGDMRKAITFLQSAHRL 244
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Nematostella
Match: EDO41130 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S523])

HSP 1 Score: 185.267 bits (469), Expect = 3.744e-52
Identity = 92/205 (44.88%), Postives = 134/205 (65.37%), Query Frame = 3 
Query:   63 LPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGE-TYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
            LPW+EKYRP  L D++ +   I  ++ F  +  LP+L+  GPPG+GKT++IL +A+ +  +  + + VLELNAS+DRGI +VR  I SFA  +     G  K++ILDE D+MT+ AQ ALRR ME ++  TRF   CN  +KII  +QSRC   R+  LS  ++L RL  +I+ E V  TDDG ++++  AQGDMR+ +N ++ T
Sbjct:   11 LPWVEKYRPKCLDDLISHTDIINTIQRFINEERLPHLLFYGPPGTGKTSTILAVAKQLYPDKQFGSMVLELNASDDRGIGIVRGDILSFASTRTIFKSGF-KLVILDEADAMTQDAQNALRRVMEKFTENTRFCLICNYLTKIIPALQSRCTRFRFGPLSVDQMLPRLEHVIESERVNVTDDGRKSLLRLAQGDMRKVLNILQST 214
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Nematostella
Match: EDO40823 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S695])

HSP 1 Score: 97.8265 bits (242), Expect = 7.356e-22
Identity = 70/226 (30.97%), Postives = 109/226 (48.23%), Query Frame = 3 
Query:   69 WLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAV------------------------LELNASNDRGIE---VVRNKIKSFARNKVNLPDGMH---KIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAI 656
            W++KYRP  L  +  ++     L+     G+ P+L++ GP G+GK T I C+ R + G   +                           LE+NAS D GI    VV+  +K+ A+   +L    H   K+++L E D +T+ AQ ALRRTME Y++T R    CN +SK+I  I+SRC  +R    S  EI   L  + K E +    +    I   +  ++R+A+
Sbjct:    4 WVDKYRPTSLGKLDYHKDLAAHLKKLVHSGDFPHLLVYGPSGAGKKTRITCILRELYGSGVEKLKIEHHSFTTPSNKKVEISTIGSIFHLEVNAS-DVGIYDRVVVQELLKNTAQAH-SLELSAHRDFKVVVLTEVDRLTKDAQHALRRTMEKYTSTCRLILCCNSTSKVIPAIRSRCLGVRIPAPSVEEICQILQFVCKKEGLTIPSELSRRIAEKSGRNLRKAL 227
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Nematostella
Match: EDO32627 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SUL3])

HSP 1 Score: 65.4698 bits (158), Expect = 8.126e-11
Identity = 58/250 (23.20%), Postives = 115/250 (46.00%), Query Frame = 3 
Query:   30 MGENLEGNHFELPWLEKYRPLVLSDIVGNEG---------------------TIKRLEIFSKQ---GNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRG--------IEVVRNK-IKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAF--ACND-SSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVEL 671
            + +NL+  +  L W++KY+P  +  I+G +G                     T+ +   F+K     +L   +++GPPG GKTT+   + +  LG +Y    +E+NAS+ R          E + NK + +F  + +    G+  ++++DE D M     +   + +     T++      CND +S+ I  + + C  LR+++    +I   ++ I   E +      ++ II  A  D+RQ ++N+ +
Sbjct:  214 LSKNLQ--YLYLMWVDKYKPSGIKQIIGQQGDKSNMRKLLNWVRNWHKNRTKTLPKSSFFNKDTDGASLKAALLSGPPGVGKTTTATLVCQE-LGYSY----VEMNASDARSKKTLEQVVSESLSNKSMDAFVGSNLAAKSGLKHVLLMDEVDGMAGSEDRGGMQELISLIKTSKIPIICMCNDRNSQKIRSLANYCFDLRFSRPRVEQIKGAMMSIAYKEGIKIPPPAMDQIIQGANQDIRQVLHNMSM 456
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Medaka
Match: rfc2 (replication factor C subunit 2 [Source:NCBI gene;Acc:101163395])

HSP 1 Score: 325.865 bits (834), Expect = 1.895e-103
Identity = 150/206 (72.82%), Postives = 181/206 (87.86%), Query Frame = 3 
Query:   60 ELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTH 677
            +LPW+EKYRPL L++IVGNE T+ RLE+F+++GN+PN+IIAGPPG+GKTTSILCLARA+LG   K+AVLELNASNDRGI+VVRNKIK FA+ KV LP G HKIIILDE DSMT+GAQQALRR ME+YS TTRFA ACN S KIIEPIQSRCA+LRY KL+D +IL+RL E+I+ E +  +DDGLEA+IFT+QGDMRQA+NN++ TH
Sbjct:   36 DLPWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGSAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRIMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYAKLTDGQILSRLQEVIEKERLSVSDDGLEAVIFTSQGDMRQALNNLQSTH 241

HSP 2 Score: 139.813 bits (351), Expect = 1.141e-35
Identity = 64/109 (58.72%), Postives = 84/109 (77.06%), Query Frame = 2 
Query: 1334 GFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASA 1660
            GFG + S+NVFKVCDEPHPLL+KSML +CV+   +EA+K + +L   GYSPEDIIG IFRV K +  + E+LKL FIKEIG  +MR+ +G+ + LQ+AGL+GRLC  +A
Sbjct:  243 GFGYINSENVFKVCDEPHPLLVKSMLGHCVDGNIDEAYKVVEHLWGLGYSPEDIIGNIFRVCKTYQ-MAEYLKLEFIKEIGYTNMRVAEGVNSLLQMAGLLGRLCSKTA 350
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Medaka
Match: rfc4 (replication factor C subunit 4 [Source:NCBI gene;Acc:101172149])

HSP 1 Score: 192.2 bits (487), Expect = 4.658e-54
Identity = 100/214 (46.73%), Postives = 142/214 (66.36%), Query Frame = 3 
Query:   63 LPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLG-ETYKNAVLELNASNDRGIEVVRNKIKSFARNKV--NLPDGM----HKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTHKV 683
            +PW+EKYRP  + ++   E  +  L+   +  +LPNL+  GPPG+GKT++IL  AR + G E Y+  VLELNAS++RGI+VVR K+K+FA+  V    PDG      KIIILDE DSMT  AQ ALRRTME  S TTRF   CN  S+IIEP+ SRC+  R+  L++     RLLEI + E++ YT + +EA++  ++GD+R+AI  ++   ++
Sbjct:   31 VPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKTFAQLTVAGTRPDGKLCPPFKIIILDEADSMTAPAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANRIQEERLLEICEKENLKYTRESIEALVQVSEGDLRKAITFLQCAARL 244
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Medaka
Match: rfc4 (replication factor C subunit 4 [Source:NCBI gene;Acc:101172149])

HSP 1 Score: 192.2 bits (487), Expect = 6.494e-54
Identity = 100/214 (46.73%), Postives = 142/214 (66.36%), Query Frame = 3 
Query:   63 LPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLG-ETYKNAVLELNASNDRGIEVVRNKIKSFARNKV--NLPDGM----HKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTHKV 683
            +PW+EKYRP  + ++   E  +  L+   +  +LPNL+  GPPG+GKT++IL  AR + G E Y+  VLELNAS++RGI+VVR K+K+FA+  V    PDG      KIIILDE DSMT  AQ ALRRTME  S TTRF   CN  S+IIEP+ SRC+  R+  L++     RLLEI + E++ YT + +EA++  ++GD+R+AI  ++   ++
Sbjct:   31 VPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKTFAQLTVAGTRPDGKLCPPFKIIILDEADSMTAPAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANRIQEERLLEICEKENLKYTRESIEALVQVSEGDLRKAITFLQCAARL 244
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Medaka
Match: rfc5 (replication factor C subunit 5 [Source:NCBI gene;Acc:101164811])

HSP 1 Score: 191.045 bits (484), Expect = 1.179e-53
Identity = 91/205 (44.39%), Postives = 138/205 (67.32%), Query Frame = 3 
Query:   63 LPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGET-YKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
            LPW+EKYRP  L D++ +   +  ++ F ++  LP+L++ GPPG+GKT++IL  AR +  +  + + VLELNAS+DRGI+VVR  I SFA  +     G  K++ILDE D+MT+ AQ ALRR +E ++  TRF   CN  SKII  +QSRC   R+  LS  +++ RL  +I+ ES+  T+DG++AI+  + GDMR+++N ++ T
Sbjct:   14 LPWVEKYRPQKLDDLISHRDILSTIQRFVREDRLPHLLLYGPPGTGKTSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGF-KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSADQMIPRLRHVIQEESIDITEDGMKAIVTLSSGDMRRSLNVLQST 217
[Close]
BLAST of replication factor C subunit 2 vs. Ensembl Medaka
Match: rfc5 (replication factor C subunit 5 [Source:NCBI gene;Acc:101164811])

HSP 1 Score: 181.03 bits (458), Expect = 2.566e-50
Identity = 88/202 (43.56%), Postives = 135/202 (66.83%), Query Frame = 3 
Query:   72 LEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGET-YKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
            +EKYRP  L D++ +   +  ++ F ++  LP+L++ GPPG+GKT++IL  AR +  +  + + VLELNAS+DRGI+VVR  I SFA  +     G  K++ILDE D+MT+ AQ ALRR +E ++  TRF   CN  SKII  +QSRC   R+  LS  +++ RL  +I+ ES+  T+DG++AI+  + GDMR+++N ++ T
Sbjct:    2 VEKYRPQKLDDLISHRDILSTIQRFVREDRLPHLLLYGPPGTGKTSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGF-KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSADQMIPRLRHVIQEESIDITEDGMKAIVTLSSGDMRRSLNVLQST 202
[Close]
BLAST of replication factor C subunit 2 vs. Planmine SMEST
Match: SMESG000041132.1 (SMESG000041132.1)

HSP 1 Score: 447.588 bits (1150), Expect = 8.018e-151
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 3 
Query:   30 MGENLEGNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTHK 680
            MGENLEGNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTHK
Sbjct:    1 MGENLEGNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTHK 217

HSP 2 Score: 238.039 bits (606), Expect = 6.942e-71
Identity = 114/118 (96.61%), Postives = 115/118 (97.46%), Query Frame = 2 
Query: 1322 LAFQGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASAAFGNK 1675
            L  +GFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRAS AFGNK
Sbjct:  214 LTHKGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQLAGLIGRLCRASVAFGNK 331
[Close]
BLAST of replication factor C subunit 2 vs. Planmine SMEST
Match: SMESG000059207.1 (SMESG000059207.1)

HSP 1 Score: 182.956 bits (463), Expect = 9.183e-51
Identity = 93/210 (44.29%), Postives = 128/210 (60.95%), Query Frame = 3 
Query:   60 ELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVN-----------LPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAI 656
             +PW+EKYRP  + DI   +  +  L+      + PN +  GPPG+GKT++IL  A+ + G  Y++ VLELNAS++RGI V+R K+K F++N V+           +P    K+IILDE DSMT  AQ ALRRTME+   TTRF   CN  SKII+PI SRCA  R+  L     ++RLL I   E+V  T   L  ++  ++GD+RQAI
Sbjct:   28 HIPWIEKYRPKTMDDIAHQDEVVAMLKKCISGSDFPNFLFYGPPGTGKTSTILAAAKDLFGLKYRDRVLELNASDERGISVIREKVKRFSQNSVSAKFRNGDDEKIIPS--FKLIILDEADSMTTAAQSALRRTMEVECKTTRFCLICNYISKIIDPITSRCAKFRFKSLDRDVAISRLLTICAAENVNITQAVLSKLVEMSEGDLRQAI 235
[Close]
BLAST of replication factor C subunit 2 vs. Planmine SMEST
Match: SMESG000008724.1 (SMESG000008724.1)

HSP 1 Score: 145.976 bits (367), Expect = 6.407e-39
Identity = 77/147 (52.38%), Postives = 99/147 (67.35%), Query Frame = 3 
Query:  234 MLGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELT 674
            M  +  ++ VLELNAS+DRGIEVVR +I +FA N + +  G  K+IILDE D+MT+ AQ AL+R +E YS  TRF   CN  +KII  IQSRC   R++ L   +I  RL+ II  E V YT DGLEA+I  + GDMRQAIN ++ T
Sbjct:    1 MYDKHVRSLVLELNASDDRGIEVVRTEILNFASN-MTIQQGKSKLIILDEADAMTKDAQNALKRIIEKYSEFTRFCLICNYQNKIIPAIQSRCTRFRFSPLKSEQIQPRLIHIINEEKVNYTPDGLEALIRLSNGDMRQAINVLQCT 146
[Close]
BLAST of replication factor C subunit 2 vs. Planmine SMEST
Match: SMESG000041142.1 (SMESG000041142.1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.578e-24
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 3 
Query:  525 YTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTHK 680
            +   +DSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTHK
Sbjct:    4 FQYFTDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVELTHK 55
[Close]
BLAST of replication factor C subunit 2 vs. Planmine SMEST
Match: SMESG000020661.1 (SMESG000020661.1)

HSP 1 Score: 100.138 bits (248), Expect = 1.276e-22
Identity = 66/224 (29.46%), Postives = 111/224 (49.55%), Query Frame = 3 
Query:   69 WLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGE---------------TYKNAVLELNASN--------DRGIE---VVRNKIKSFARNKV--NLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAI 656
            W +K++PL LS++  ++    R++     G+ P+L+I G  GSGK T I C+ R + G+               ++K   + L  SN        D GI    ++++ IKS A      ++     K+I++ E D +T  AQ ALRRTME Y ++ R       ++KII  I+SRC  +R    S+ EI   ++   + ES+I      + I   ++G++RQ +
Sbjct:    4 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVPSPSEKEIEKIIISTCQKESLIIPRALAKRIAEASKGNLRQGL 227
The following BLAST results are available for this feature:
BLAST of replication factor C subunit 2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RFC21.954e-10774.16replication factor C subunit 2 [Source:HGNC Symbol... [more]
RFC21.495e-8161.72replication factor C subunit 2 [Source:HGNC Symbol... [more]
RFC23.660e-6175.76replication factor C subunit 2 [Source:HGNC Symbol... [more]
RFC42.262e-5344.89replication factor C subunit 4 [Source:HGNC Symbol... [more]
RFC44.327e-5344.89replication factor C subunit 4 [Source:HGNC Symbol... [more]
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BLAST of replication factor C subunit 2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 4
Match NameE-valueIdentityDescription
rfc-23.651e-9567.49RFC (DNA replication factor) family [Source:UniPr... [more]
F44B9.82.065e-4943.66Probable replication factor C subunit 5 [Source:U... [more]
rfc-46.110e-4140.10Replication factor C subunit 4 [Source:UniProtKB/... [more]
rfc-32.499e-2630.57RFC (DNA replication factor) family [Source:UniPr... [more]
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BLAST of replication factor C subunit 2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RfC41.689e-10271.71gene:FBgn0260985 transcript:FBtr0073264[more]
CG81421.777e-5344.81gene:FBgn0030871 transcript:FBtr0074472[more]
RfC32.785e-5244.76gene:FBgn0032244 transcript:FBtr0080019[more]
RfC387.933e-2530.09gene:FBgn0028700 transcript:FBtr0080225[more]
RfC387.933e-2530.09gene:FBgn0028700 transcript:FBtr0344786[more]
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BLAST of replication factor C subunit 2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rfc23.862e-10372.95replication factor C (activator 1) 2 [Source:ZFIN;... [more]
rfc51.423e-5444.66replication factor C (activator 1) 5 [Source:ZFIN;... [more]
rfc42.179e-4947.42replication factor C (activator 1) 4 [Source:ZFIN;... [more]
rfc42.179e-4947.42replication factor C (activator 1) 4 [Source:ZFIN;... [more]
rfc43.388e-4945.71replication factor C (activator 1) 4 [Source:ZFIN;... [more]
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BLAST of replication factor C subunit 2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
prokr11.117e-10875.24prokineticin receptor 1 [Source:Xenbase;Acc:XB-GEN... [more]
prokr14.243e-10875.24prokineticin receptor 1 [Source:Xenbase;Acc:XB-GEN... [more]
prokr16.855e-10875.24prokineticin receptor 1 [Source:Xenbase;Acc:XB-GEN... [more]
prokr17.886e-10875.24prokineticin receptor 1 [Source:Xenbase;Acc:XB-GEN... [more]
prokr13.389e-10575.12prokineticin receptor 1 [Source:Xenbase;Acc:XB-GEN... [more]
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BLAST of replication factor C subunit 2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rfc27.899e-10974.64replication factor C (activator 1) 2 [Source:MGI S... [more]
Rfc59.199e-5141.95replication factor C (activator 1) 5 [Source:MGI S... [more]
Rfc43.301e-4943.72replication factor C (activator 1) 4 [Source:MGI S... [more]
Rfc43.986e-4943.72replication factor C (activator 1) 4 [Source:MGI S... [more]
Rfc41.215e-4648.09replication factor C (activator 1) 4 [Source:MGI S... [more]
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BLAST of replication factor C subunit 2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P53033|RFC2_CHICK4.432e-11076.92Replication factor C subunit 2 OS=Gallus gallus OX... [more]
sp|Q05B83|RFC2_BOVIN2.590e-10875.24Replication factor C subunit 2 OS=Bos taurus OX=99... [more]
sp|Q9WUK4|RFC2_MOUSE5.525e-10874.64Replication factor C subunit 2 OS=Mus musculus OX=... [more]
sp|Q641W4|RFC2_RAT7.918e-10874.88Replication factor C subunit 2 OS=Rattus norvegicu... [more]
sp|P35250|RFC2_HUMAN9.384e-10774.16Replication factor C subunit 2 OS=Homo sapiens OX=... [more]
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BLAST of replication factor C subunit 2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
I1ZI834.476e-154100.00Replication factor C subunit 2 (Fragment) OS=Schmi... [more]
G1MUA02.338e-10876.67Replication factor C subunit 2 OS=Meleagris gallop... [more]
A0A1D5PYS34.688e-10876.92Replication factor C subunit 2 OS=Gallus gallus OX... [more]
A0A3L8S3B65.908e-10876.92AAA domain-containing protein OS=Chloebia gouldiae... [more]
U3IPH51.194e-10776.92Replication factor C subunit 2 OS=Anas platyrhynch... [more]
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BLAST of replication factor C subunit 2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rfc29.977e-10471.43replication factor C (activator 1) 2 [Source:ZFIN;... [more]
rfc23.860e-10371.43replication factor C (activator 1) 2 [Source:ZFIN;... [more]
rfc24.063e-7859.05replication factor C (activator 1) 2 [Source:ZFIN;... [more]
rfc44.076e-5746.22replication factor C (activator 1) 4 [Source:ZFIN;... [more]
rfc55.159e-5343.20replication factor C subunit 5 [Source:NCBI gene;A... [more]
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BLAST of replication factor C subunit 2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSPMAT00000008618.11.740e-10472.86pep scaffold:Pmarinus_7.0:GL477502:54132:62470:-1 ... [more]
rfc51.118e-5344.59replication factor C (activator 1) 5 [Source:ZFIN;... [more]
rfc41.791e-4346.59replication factor C (activator 1) 4 [Source:ZFIN;... [more]
rfc33.506e-2430.22replication factor C (activator 1) 3 [Source:ZFIN;... [more]
rfc13.499e-621.43replication factor C (activator 1) 1 [Source:ZFIN;... [more]
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BLAST of replication factor C subunit 2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 5
Match NameE-valueIdentityDescription
RFC47.104e-10270.39Subunit of heteropentameric Replication factor C (... [more]
RFC26.733e-5044.93Subunit of heteropentameric Replication factor C (... [more]
RFC31.147e-4943.72Subunit of heteropentameric Replication factor C (... [more]
RFC58.467e-2532.77Subunit of heteropentameric Replication factor C (... [more]
RFC14.034e-1125.88Subunit of heteropentameric Replication factor C (... [more]
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BLAST of replication factor C subunit 2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO393851.509e-10474.40Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO409503.405e-5345.91Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO411303.744e-5244.88Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO408237.356e-2230.97Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO326278.126e-1123.20Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of replication factor C subunit 2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rfc21.895e-10372.82replication factor C subunit 2 [Source:NCBI gene;A... [more]
rfc44.658e-5446.73replication factor C subunit 4 [Source:NCBI gene;A... [more]
rfc46.494e-5446.73replication factor C subunit 4 [Source:NCBI gene;A... [more]
rfc51.179e-5344.39replication factor C subunit 5 [Source:NCBI gene;A... [more]
rfc52.566e-5043.56replication factor C subunit 5 [Source:NCBI gene;A... [more]
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BLAST of replication factor C subunit 2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000041132.18.018e-151100.00SMESG000041132.1[more]
SMESG000059207.19.183e-5144.29SMESG000059207.1[more]
SMESG000008724.16.407e-3952.38SMESG000008724.1[more]
SMESG000041142.13.578e-2490.38SMESG000041142.1[more]
SMESG000020661.11.276e-2229.46SMESG000020661.1[more]
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Cross References
External references for this transcript
DatabaseAccession
SmedGD GBrowseSMED30028415
GenBankAFJ24737.1
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30028415 ID=SMED30028415|Name=replication factor C subunit 2|organism=Schmidtea mediterranea sexual|type=transcript|length=2699bp
TAGTATTTCAAAAAACAAAGAATTTGTTAATGGGTGAAAATCTCGAAGGT
AATCATTTTGAGCTTCCATGGTTAGAAAAATATCGTCCTCTTGTATTGTC
TGATATTGTGGGCAATGAAGGAACAATTAAACGTTTAGAAATATTTTCTA
AACAAGGGAATTTGCCAAATTTGATAATTGCAGGTCCACCAGGTAGTGGA
AAAACTACTAGTATTTTGTGTTTAGCTCGTGCAATGTTAGGAGAGACTTA
TAAGAATGCTGTTCTTGAGTTAAATGCTTCTAATGATCGTGGAATCGAAG
TTGTTCGTAACAAAATAAAATCGTTTGCTCGAAACAAAGTAAATTTGCCC
GATGGTATGCATAAAATAATCATTTTAGATGAAGGAGACAGCATGACTGA
AGGAGCTCAACAAGCTCTTAGAAGAACTATGGAAATGTATTCTAATACAA
CTCGATTCGCATTTGCATGTAATGATTCATCAAAGATTATTGAACCTATA
CAAAGTCGATGTGCGATGTTGCGATATACTAAATTAAGCGATTCCGAAAT
TTTGGCAAGATTGTTGGAAATAATCAAAATGGAATCTGTAATTTATACAG
ATGATGGCTTAGAAGCTATCATATTTACAGCCCAAGGTGACATGCGACAA
GCCATTAATAATGTCGAATTGACTCACAAGGTTACTAGATTAAATTAATT
ATCATTATGATTATTTAATATTGAGAGTGTTTTATTCTCATCATTGGGAT
ATTAATTACTTTTTTTGTTAGGGTTTGATTTTAAATATTCTTGCGCTTAT
TTTGATAAATTTTCTCGATTAAACTACATTTTGGATTCAATAATTTACAA
ATTTGCCTTGATATAATTGGCAATATCATTTTTGTCATAGTTACGGTTTG
CCAGTTTAAAACATTATTTCACAAAAAAATGATAAATGATTTCCACAAAA
GGGGATTACAGTGGCGGGCATAACCGGGAGAGCTATTGCTGATAACGCAG
CTCTACTGTATAATTGAAAACTTTTCGGTTGTCATGGAAACATGCCCTTC
AAACTTCTAGGTATTTATTTGGGTATTTTATCGCCCCCCTAAATGAATTT
CCCTAAATTCAAGTCCTAGCTCAACAGAGTTTCACAAAATTCCATTAAAA
TCGTTTGAACACTTTCAAACAAGACATTTATAAATATGTTTAAAATCAAT
AATAAAGTGACTAATTTAGATAAGTTTATGAAAATTAAAAATATTTCCAT
AAATAAATGTTGTAAAAGTCGACTGAAAATTAGACAATAAAAAAATGTTT
ATCAATTTTGATGTTCCAACTCTCGCGTTCCAGGGATTCGGATCGGTGAC
GAGTGACAATGTGTTCAAGGTTTGCGATGAGCCGCATCCTTTGCTTATTA
AATCGATGCTGGAAAATTGCGTGGAATCCAAGTTTAATGAAGCCTTTAAA
TCACTGAATAATTTGGTAGCATTCGGTTATTCACCGGAAGATATTATCGG
AATCATTTTCCGCGTCACGAAAAATCACGATGGAATTCCCGAGTTTTTGA
AGCTTAGATTTATAAAAGAAATCGGTGAAGTCCATATGCGGATCGTTGAC
GGGTTGACTACTCACCTTCAATTGGCCGGTTTGATTGGCAGGCTGTGCAG
AGCTTCCGCTGCATTTGGTAATAAATAGATGTTGATATTTCATGTTTGTC
ATTGATTATTTGTAATTGCACTAATTATTTATGGACATTTTATTGGTGTT
TCGTGTTGTCAAGGATACGGGCGCATAAATGAGCCACTAATGCCACCTGG
GTGAGCAGTGCTTCTGAATGTAGTTATTGCGCAGTCGTTATACATGATCT
AGCGATCGACATATGCGCCGAAGTCTCTGATAACTTTTTCACCAAAACAA
TATATTTAATTATAGTATGAACATTAAAGACTAATGAATCAGTCACATAC
GATATTAGCCATCAGCGAATTGATTTTAAAACAGGATTATCATTGGACTA
AAATTTATTACAAATTGAGCAAAGTTCGATCCGATTCCACTATAGCTGGT
ATTTTGTTATCCTGGAAATTTATCCCTATACCAGGGCTGGATTATCCAGT
AGGCACTGTGTCTAGGGCCTACGAAGAAAATTGAATTACATTTTTTTATT
GAGTGAATTAAAATAGAGAAATAAGCAAAATTCAAAATCAATCACTTTAT
ATTTAGAAACTGTAATACACAGTAAACTAAATTTTATAAACTTTGCGGCT
CTTTGCATGGGCAAAATCACAAATAACATCTTCAAATGACATTTTCCAGA
TTAAATCGTTTTCAATCGAAAGAAGTGCAAGAGAAGACAATCGTTCTTGT
CACATCGTTGATCGCAGGTAATTTTTGATAAGTTTCAGTCTTGAAAAAGG
TCATTCACACCCCAGTGGCGGATTTAGGTCAGTCGAGGTACGGGGCGCAG
AAAAAAATATTGGGCCCCAAATAAAACGAGACAAGGAAAATAAAAATTAG
TGTTATACATACATAGATATGCCCTTAAACTAATTTGTTTTTGCTTAGGA
ATCAGATGTTTTTTTTAATGTATTAGTAAGGAGAAGAGAAAGGGTGGCAT
GAGACATGACATACGAGAAAGAAATTTAATATAAATCCGCCTCTGGTTCA
CCATGATAGCTTGATACAGAAATTAAAAGATAAATTCGAAAAGCAATAT
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protein sequence of SMED30028415-orf-1

>SMED30028415-orf-1 ID=SMED30028415-orf-1|Name=SMED30028415-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=128bp
MFINFDVPTLAFQGFGSVTSDNVFKVCDEPHPLLIKSMLENCVESKFNEA
FKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRI
VDGLTTHLQLAGLIGRLCRASAAFGNK*
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protein sequence of SMED30028415-orf-2

>SMED30028415-orf-2 ID=SMED30028415-orf-2|Name=SMED30028415-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=232bp
VFQKTKNLLMGENLEGNHFELPWLEKYRPLVLSDIVGNEGTIKRLEIFSK
QGNLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDRGIEV
VRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTT
RFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTD
DGLEAIIFTAQGDMRQAINNVELTHKVTRLN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000014zeta neoblast
PLANA:0000420parapharyngeal region
PLANA:0000429neoblast
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR003593AAA+_ATPase
IPR027417P-loop_NTPase
IPR003959ATPase_AAA_core
IPR013748Rep_factorC_C
IPR008921DNA_pol3_clamp-load_cplx_C
Vocabulary: molecular function
TermDefinition
GO:0005524ATP binding
GO:0003677DNA binding
Vocabulary: biological process
TermDefinition
GO:0006260DNA replication
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 53..189
e-value: 8.1E-10
score: 48.6
NoneNo IPR availableGENE3DG3DSA:1.10.8.60coord: 179..230
e-value: 3.0E-19
score: 70.2
NoneNo IPR availableGENE3DG3DSA:3.40.50.300coord: 16..178
e-value: 1.2E-49
score: 170.4
NoneNo IPR availablePANTHERPTHR11669REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNITcoord: 17..228
NoneNo IPR availablePANTHERPTHR11669:SF5REPLICATION FACTOR C SUBUNIT 2coord: 17..228
NoneNo IPR availableCDDcd18140HLD_clamp_RFCcoord: 178..225
e-value: 3.14768E-14
score: 63.3169
NoneNo IPR availableCDDcd00009AAAcoord: 36..170
e-value: 6.8787E-20
score: 80.6531
IPR003959ATPase, AAA-type, corePFAMPF00004AAAcoord: 58..173
e-value: 5.8E-11
score: 42.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILYSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 20..223