GCR130
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Overview
Neoblast Clusters
Zeng et. al., 2018
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny AppEmbryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30028381 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 1
Homology
BLAST of GCR130 vs. TrEMBL
Match: A0A193KUD6 (GCR130 OS=Schmidtea mediterranea OX=79327 GN=gcr130 PE=2 SV=1) HSP 1 Score: 603.208 bits (1554), Expect = 0.000e+0 Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 3
Query: 78 MSDDVPPPLHPVEIALMAIGMVGNILCCMLMFRNRLMPDKXXXXXXXXXXXXXXXDFFSNLFYIISLISYPKIKSEALGAFVCRVIRSQALFWMISTLRAGVNVVIAILNFIKLLYPFLSTSXXXXXXXXXXXXXXFVVSLIQVVPHVSTVSFSPNSTKHNCNFSAILNFQEVTGLVGMVRFFALFNFIYLYIFPLTATMFLYKQVFNCLKESDDEPRKIAYREIMKSFLMDTVLYLLCFSMHSILFFLYQFSSKIGYLVTSTLYRIGMXXXXXXXXXXPYISMATRRAYRKPISDVMKIFGFKQYNTTIYKQSISKYGHSIDNXXXXXXXXXXXXXXXXXXGNTSKPTSSVNDWSDNDSF 1160
MSDDVPPPLHPVEIALMAIGMVGNILCCMLMFRNRLMPDKNVNLNAVLNLLQSLLDFFSNLFYIISLISYPKIKSEALGAFVCRVIRSQALFWMISTLRAGVNVVIAILNFIKLLYPFLSTSGNLIGFIGIGLALLFVVSLIQVVPHVSTVSFSPNSTKHNCNFSAILNFQEVTGLVGMVRFFALFNFIYLYIFPLTATMFLYKQVFNCLKESDDEPRKIAYREIMKSFLMDTVLYLLCFSMHSILFFLYQFSSKIGYLVTSTLYRIGMLLVALYAVLYPYISMATRRAYRKPISDVMKIFGFKQYNTTIYKQSISKYGHSIDNSGSRFSKFFSSKQKNKPSGNTSKPTSSVNDWSDNDSF
Sbjct: 1 MSDDVPPPLHPVEIALMAIGMVGNILCCMLMFRNRLMPDKNVNLNAVLNLLQSLLDFFSNLFYIISLISYPKIKSEALGAFVCRVIRSQALFWMISTLRAGVNVVIAILNFIKLLYPFLSTSGNLIGFIGIGLALLFVVSLIQVVPHVSTVSFSPNSTKHNCNFSAILNFQEVTGLVGMVRFFALFNFIYLYIFPLTATMFLYKQVFNCLKESDDEPRKIAYREIMKSFLMDTVLYLLCFSMHSILFFLYQFSSKIGYLVTSTLYRIGMLLVALYAVLYPYISMATRRAYRKPISDVMKIFGFKQYNTTIYKQSISKYGHSIDNSGSRFSKFFSSKQKNKPSGNTSKPTSSVNDWSDNDSF 361
BLAST of GCR130 vs. TrEMBL
Match: A0A193KUT4 (GCR127 OS=Schmidtea mediterranea OX=79327 GN=gcr127 PE=2 SV=1) HSP 1 Score: 332.798 bits (852), Expect = 1.994e-108 Identity = 190/358 (53.07%), Postives = 255/358 (71.23%), Query Frame = 3
Query: 87 DVPPPLHPVEIALMAIGMVGNILCCMLMFRNRLMPDKXXXXXXXXXXXXXXXDFFSNLFYIISLISYPKIKSEALGAFVCRVIRSQALFWMISTLRAGVNVVIAILNFIKLLYPFLSTSXXXXXXXXXXXXXXFVVSLIQVVPHVSTVSFSPNSTKHNCNFSAILNFQEVTGLVGMVRFFALFNFIYLYIFPLTATMFLYKQVFNCLKESDDEPRKIAYREIMKSFLMDTVLYLLCFSMHSILFFLYQFSSKIGYLVTSTLYRIGMXXXXXXXXXXPYISMATRRAYRKPISDVMKIFGFKQYNTTIYKQSISKYGHSIDNXXXXXXXXXXXXXXXXXXGNTSKPTSSVNDWSDNDSF 1160
+ P L+ +EI++M IGM GNI CC+LM R+RLMPD+NVN+NAV +L+QS LDFF LFYI+SL+ YPKI ++ LG FVCR+I+S+ALFWMI +LRA +N+VI I NFIKLLYPFL + NLI F+ GL +L VSL+Q++P++ VSF N NCNFSAI F E T L G++R +A+FNFIYLY+FP+T T+F+YKQ+++CLK+S+D RKI +EIMKSFL+DTV Y CFS HSI+ FL +F+ Y +T YRIGM ++ +YAV+YPYISM TRR Y+KP+SD+ K+ G K + K+S SKY + + ++ K S SK +S+ WSD+ SF
Sbjct: 5 EEPYGLYSIEISIMVIGMSGNIACCILMSRSRLMPDRNVNMNAVFSLVQSALDFFLCLFYILSLMDYPKIHNDFLGIFVCRIIKSKALFWMICSLRAAINIVIGIFNFIKLLYPFLKSVSNLIMFLTAGLGMLVTVSLLQIIPNIGMVSFIRNDKMRNCNFSAIHRFVEFTKLFGILRLYAVFNFIYLYLFPITVTLFVYKQIYDCLKDSEDTSRKIVMKEIMKSFLLDTVFYFFCFSFHSIIMFLSEFNDNFEYSITDKSYRIGMAMIVMYAVVYPYISMITRRPYKKPMSDIAKLLGVKSPAIILDKRSTSKYA---NYETASSIFNALFQKTTKFSATLSKGSSTAKRWSDDASF 359
BLAST of GCR130 vs. TrEMBL
Match: A0A3S5C8R3 (Uncharacterized protein OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS36153 PE=4 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 3.150e-14 Identity = 78/288 (27.08%), Postives = 145/288 (50.35%), Query Frame = 3
Query: 111 VEIALMAIGMVGNILCCMLMFRNRLMPDKXXXXXXXXXXXXXXXDFFSNLFYIISLISYPKIKSEALGAFVCRVIRSQALFWMISTLRAGVNVVIAILNFIKLLYPFLSTSXXXXXXXXXXXXXXFVVSLIQVVPHVSTVSFSPNSTKHNCNFSAILNFQEVTGLVGMVRFFALFNFIYLYIFPLTATMFLYKQVFNCLKESDDEPRKIAYREIMKSFLMDTVLYLLC---FSMHSILFFLYQFSSKIGYLVTSTLYRIGMXXXXXXXXXXPYISMATRRAYRKPISD 965
+E+ AIG+ GNI C + +FR RL D++ N +L+LLQ+ FF L + L S +++ AL F C + + L W LR ++A +NFI+LL+PF+ L+ + + + + I ++P + F+ + + ++ LFN ++ P +A +Y+++ L SDDE R++AY+E+ K++L+D++ +C +++ L L+Q +++ L +T I ++A YP++S+A RR Y+K I +
Sbjct: 11 IELLTSAIGIFGNITCLVALFRVRLQSDRSYNPLVLLHLLQA---FFDLLICMHGLCS--PLEAFALSIFTCLTLVLRPLIWFFYCLRLYCTFLLAGINFIRLLHPFIKAPAQLLLMVFFTCIVCLITASIGMLPLLIEPRFA-DGLCPTLGAKGQKDVSPAGDRAAVIHLLILFNLAINFLGPYSAIFHMYRKILASLGNSDDETRQLAYQELNKTYLLDSLFLGVCNLPLNLYC-LVALHQSANRPTVLFLATYPSI------VFATFYPFLSLAFRRMYKKAIME 285
BLAST of GCR130 vs. TrEMBL
Match: A0A5J4NHK8 (G_PROTEIN_RECEP_F1_2 domain-containing protein (Fragment) OS=Paragonimus westermani OX=34504 GN=DEA37_0007624 PE=4 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.159e-13 Identity = 54/198 (27.27%), Postives = 96/198 (48.48%), Query Frame = 3
Query: 354 WMISTLRAGVNVVIAILNFIKLLYPFLSTSXXXXXXXXXXXXXXFVVSLIQVVPHVSTVSFSPNSTKHNCNFSAILNFQEVTGLVGMVRFFALFNFIYLYIFPLTATMFLYKQVFNCLKESDDEPRKIAYREIMKSFLMDTVLYLLCFSMHSILFFLYQFSSKIGYLVTSTLYRIGMXXXXXXXXXXPYISMATRRAY 947
W+++ LR +N +A +FI+L+YPF+ S + +G + V H+ + + T C F + VG VR F L F+Y ++FPLTA+ ++Y ++F+ ++ + + + Y+E+ K+ + D L+L C S I FL + S+ S L I L+ Y + P S+ RR++
Sbjct: 40 WLLTGLRGALNFSVATHSFIQLVYPFVHVSIRRGVLVILGGFSVTFTLFTMAVAHLDS-----SETDRRCAFVP----DSLVDYVGFVRVFHLITFVYQFLFPLTASAYMYHKIFDTIRGAHSQVGRNVYKELWKTRMCDVYLFLFCVSPAHICAFLVRMHSEKTSYSNSRLELINTYLMIFYHIASPIYSLTFRRSF 228
BLAST of GCR130 vs. TrEMBL
Match: A0A4S2LBB4 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_008559 PE=4 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.073e-12 Identity = 70/286 (24.48%), Postives = 126/286 (44.06%), Query Frame = 3
Query: 117 IALMAIGMVGNILCCMLMFRNRLMPDKXXXXXXXXXXXXXXXDFFSNLFYIISLISYPKIKSEALGAFVCRVIRSQALFWMISTLRAGVNVVIAILNFIKLLYPFLSTSXXXXXXXXXXXXXXFVVSLIQVVPHVSTVSFSPN-STKHNCNFSAILNFQEVTGLVGMVRFFALFNFIYLYIFPLTATMFLYKQVFNCLKESDDEPRKIAYREIMKSFLMDTVLYLLCFSMHSILFFLYQFSSKIGYLVTSTLYRIGMXXXXXXXXXXPYISMATRRAYRKPISDVM 971
I L +G V NI+ + + R + ++Q +D + + Y++S + + + F CR++R++ALFW RA +NV ++ ++++YPF ST N L +++Q + S + ST C + G+ F L++ IY + FP A + + L + D + + Y+E ++ +D VL+++C S H LF L F+S Y + + Y + LL Y VL P SM R+ P+ + +
Sbjct: 10 ILLATVGTVINIISLIFVSRTTCQAGTLAKKVLYIIIVQHSIDIVACIAYLLSSV---DLDEQFPSIFTCRILRTRALFWAAINYRAYINVYGSLWQHVRIIYPFWSTVLNRTEGCVGLFLLATAANILQTLAFTRLSELSADQSTCIPCTPC------QTGENAGIYSFLVLYSTIYRFAFPAMAMFASFGYLMQVLSDCDGKVYRQMYKETRRNLFIDAVLFVICLSTHEALFTLNVFASNKEYGLRTAPYEVASLLALGYPVLSPCFSMCLRKTNYTPVLEAV 286
BLAST of GCR130 vs. Planmine SMEST
Match: SMESG000062854.1 (SMESG000062854.1) HSP 1 Score: 603.208 bits (1554), Expect = 0.000e+0 Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 3
Query: 78 MSDDVPPPLHPVEIALMAIGMVGNILCCMLMFRNRLMPDKXXXXXXXXXXXXXXXDFFSNLFYIISLISYPKIKSEALGAFVCRVIRSQALFWMISTLRAGVNVVIAILNFIKLLYPFLSTSXXXXXXXXXXXXXXFVVSLIQVVPHVSTVSFSPNSTKHNCNFSAILNFQEVTGLVGMVRFFALFNFIYLYIFPLTATMFLYKQVFNCLKESDDEPRKIAYREIMKSFLMDTVLYLLCFSMHSILFFLYQFSSKIGYLVTSTLYRIGMXXXXXXXXXXPYISMATRRAYRKPISDVMKIFGFKQYNTTIYKQSISKYGHSIDNXXXXXXXXXXXXXXXXXXGNTSKPTSSVNDWSDNDSF 1160
MSDDVPPPLHPVEIALMAIGMVGNILCCMLMFRNRLMPDKNVNLNAVLNLLQSLLDFFSNLFYIISLISYPKIKSEALGAFVCRVIRSQALFWMISTLRAGVNVVIAILNFIKLLYPFLSTSGNLIGFIGIGLALLFVVSLIQVVPHVSTVSFSPNSTKHNCNFSAILNFQEVTGLVGMVRFFALFNFIYLYIFPLTATMFLYKQVFNCLKESDDEPRKIAYREIMKSFLMDTVLYLLCFSMHSILFFLYQFSSKIGYLVTSTLYRIGMLLVALYAVLYPYISMATRRAYRKPISDVMKIFGFKQYNTTIYKQSISKYGHSIDNSGSRFSKFFSSKQKNKPSGNTSKPTSSVNDWSDNDSF
Sbjct: 1 MSDDVPPPLHPVEIALMAIGMVGNILCCMLMFRNRLMPDKNVNLNAVLNLLQSLLDFFSNLFYIISLISYPKIKSEALGAFVCRVIRSQALFWMISTLRAGVNVVIAILNFIKLLYPFLSTSGNLIGFIGIGLALLFVVSLIQVVPHVSTVSFSPNSTKHNCNFSAILNFQEVTGLVGMVRFFALFNFIYLYIFPLTATMFLYKQVFNCLKESDDEPRKIAYREIMKSFLMDTVLYLLCFSMHSILFFLYQFSSKIGYLVTSTLYRIGMLLVALYAVLYPYISMATRRAYRKPISDVMKIFGFKQYNTTIYKQSISKYGHSIDNSGSRFSKFFSSKQKNKPSGNTSKPTSSVNDWSDNDSF 361
BLAST of GCR130 vs. Planmine SMEST
Match: SMESG000062853.1 (SMESG000062853.1) HSP 1 Score: 332.798 bits (852), Expect = 5.546e-112 Identity = 190/358 (53.07%), Postives = 255/358 (71.23%), Query Frame = 3
Query: 87 DVPPPLHPVEIALMAIGMVGNILCCMLMFRNRLMPDKXXXXXXXXXXXXXXXDFFSNLFYIISLISYPKIKSEALGAFVCRVIRSQALFWMISTLRAGVNVVIAILNFIKLLYPFLSTSXXXXXXXXXXXXXXFVVSLIQVVPHVSTVSFSPNSTKHNCNFSAILNFQEVTGLVGMVRFFALFNFIYLYIFPLTATMFLYKQVFNCLKESDDEPRKIAYREIMKSFLMDTVLYLLCFSMHSILFFLYQFSSKIGYLVTSTLYRIGMXXXXXXXXXXPYISMATRRAYRKPISDVMKIFGFKQYNTTIYKQSISKYGHSIDNXXXXXXXXXXXXXXXXXXGNTSKPTSSVNDWSDNDSF 1160
+ P L+ +EI++M IGM GNI CC+LM R+RLMPD+NVN+NAV +L+QS LDFF LFYI+SL+ YPKI ++ LG FVCR+I+S+ALFWMI +LRA +N+VI I NFIKLLYPFL + NLI F+ GL +L VSL+Q++P++ VSF N NCNFSAI F E T L G++R +A+FNFIYLY+FP+T T+F+YKQ+++CLK+S+D RKI +EIMKSFL+DTV Y CFS HSI+ FL +F+ Y +T YRIGM ++ +YAV+YPYISM TRR Y+KP+SD+ K+ G K + K+S SKY + + ++ K S SK +S+ WSD+ SF
Sbjct: 5 EEPYGLYSIEISIMVIGMSGNIACCILMSRSRLMPDRNVNMNAVFSLVQSALDFFLCLFYILSLMDYPKIHNDFLGIFVCRIIKSKALFWMICSLRAAINIVIGIFNFIKLLYPFLKSVSNLIMFLTAGLGMLVTVSLLQIIPNIGMVSFIRNDKMRNCNFSAIHRFVEFTKLFGILRLYAVFNFIYLYLFPITVTLFVYKQIYDCLKDSEDTSRKIVMKEIMKSFLLDTVFYFFCFSFHSIIMFLSEFNDNFEYSITDKSYRIGMAMIVMYAVVYPYISMITRRPYKKPMSDIAKLLGVKSPAIILDKRSTSKYA---NYETASSIFNALFQKTTKFSATLSKGSSTAKRWSDDASF 359
BLAST of GCR130 vs. Planmine SMEST
Match: SMESG000062839.1 (SMESG000062839.1) HSP 1 Score: 112.079 bits (279), Expect = 1.586e-27 Identity = 64/202 (31.68%), Postives = 109/202 (53.96%), Query Frame = 3
Query: 258 LFYIISLISYPKIKSEALGAFVCRVIRSQALFWMISTLRAGVNVVIAILNFIKLLYPFLSTSXXXXXXXXXXXXXXFVVSLIQVVPHVSTVSFSPNST-------KHNCNFSAILNFQEVTGLVGMVRFFALFNFIYLYIFPLTATMFLYKQVFNCLKESDDEPRKIAYREIMKSFLMDTVLYLLCFSMHSILFFLYQFSSK 842
L YI+ YP+ +C+ + + AL W + T R+ + VVI + NFIKLLYPF++ GN+ +G+ + F +S + V+P+V +S +PN + CNF I T +G+ ++++ F+YLY+FP+ A LY Q+ +CL + D R AYRE++K + +D L+ + + + Y FS++
Sbjct: 55 LLYILRFTKYPERNGNLSKIIICKYVVNLALLWFVVTFRSLLKVVICLNNFIKLLYPFMNVRGNVEIVFVVGIIINFAISCVAVIPYV--ISSAPNENVELNVDIESYCNFKKIEKIINETDFIGLQYIYSIYQFVYLYLFPIIACYILYNQILDCLCQHVDSTRMQAYREVLKCYWLDVFLFAILYGPYCFYSLSYCFSAQ 254
BLAST of GCR130 vs. Planmine SMEST
Match: SMESG000062838.1 (SMESG000062838.1) HSP 1 Score: 103.219 bits (256), Expect = 1.528e-24 Identity = 62/207 (29.95%), Postives = 118/207 (57.00%), Query Frame = 3
Query: 243 DFFSNLFYIISLISYPKIKSEALGAFVCRVIRSQALFWMISTLRAGVNVVIAILNFIKLLYPFLSTSXXXXXXXXXXXXXXFVVSLIQVVPHVSTVSFSPN-------STKHNCNFSAILNFQEVTGLVGMVRFFALFNFIYLYIFPLTATMFLYKQVFNCLKESDDEPRKIAYREIMKSFLMDTVLYLLCFSMHSILFFLYQFSSK 842
D + Y++ I+YP + +C+ I + A FW + + R+ +NVVI + NF+KLLYPF++ G +GL + ++S I +VP+V ++ PN +T+ C+F I + + +G+ +++++F+YLY+FP+ A LY Q+ NCL ++ D+ R + Y+E++K + +DT L+ + + + + + FSS+
Sbjct: 26 DILICVLYLLRAINYPLNNGKISRVIICKFIMNLAFFWFVVSFRSLLNVVICLNNFVKLLYPFMNIRGTFESIFLVGLLINIIISFISIVPYV--LASGPNEQVTVSVNTESYCHFDEITKVIQDSDFIGLQYIYSIYHFVYLYLFPIIACYILYNQILNCLCQNVDKTRILIYQELLKCYWLDTYLFAILYGPYCLYSLSFCFSSQ 230
BLAST of GCR130 vs. Planmine SMEST
Match: SMESG000062805.1 (SMESG000062805.1) HSP 1 Score: 61.6178 bits (148), Expect = 2.498e-10 Identity = 61/246 (24.80%), Postives = 119/246 (48.37%), Query Frame = 3
Query: 108 PVEIALMAIGMVGNILCCMLMFRNRLMPDKXXXXXXXXXXXXXXXDFFSNLFYIISLISYPKIKSEALGAFVCRVIRSQALFWMISTLRAGVNVVIAILNFIKLLYPFLSTSXXXXXXXXXXXXXXFVVSLIQVVPHV---STVSFSPNSTKHNCNFSAILNFQEVTGLVGMVRFFALFNFIYLYIFPLTATMFLYKQVFNCLKESDDEPRKIAYREIMKSFLMDTVLYLLCFSMHSILFFLYQFS 836
P +G++ N++ L+ NR + DK +N + + NL +L D L ++I+L+ +G +C + + + F+ + + R+G+ +++ + +FIKLLYPFL S + G LL S++ +P + T+ + C N++ L+ +V F Y ++ P T+F Y + + + R+ A+ E+ KSFL+D++L+++C+ S+ Y FS
Sbjct: 2 PFTTLAFGLGVIINVIFFYLLLINRHLSDKTINKSILFNLAITLCDGLICLEFLINLMDKWMFYEGFVGKLMCILFYNDSAFYFLMSCRSGLTLLMCLYHFIKLLYPFLVNSVYFTFVVSSGFVLLLGNSIL--IPFIIIRRTLIYGYEYELTYCLLEP-FNYEGTQFLINIVF------FTYSFLMPGIGTVFFYAHILKSINSIETISREKAFVELRKSFLIDSLLFIICYLHFSLKLLSYCFS 238 The following BLAST results are available for this feature:
BLAST of GCR130 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of GCR130 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of GCR130 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of GCR130 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of GCR130 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of GCR130 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of GCR130 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of GCR130 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of GCR130 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of GCR130 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of GCR130 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of GCR130 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of GCR130 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of GCR130 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30028381 ID=SMED30028381|Name=GCR130|organism=Schmidtea mediterranea sexual|type=transcript|length=1217bpback to top protein sequence of SMED30028381-orf-1 >SMED30028381-orf-1 ID=SMED30028381-orf-1|Name=SMED30028381-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=362bp MSDDVPPPLHPVEIALMAIGMVGNILCCMLMFRNRLMPDKNVNLNAVLNLback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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