DNA excision repair protein ERCC-1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30028315 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 6
Homology
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Human
Match: ERCC1 (ERCC excision repair 1, endonuclease non-catalytic subunit [Source:HGNC Symbol;Acc:HGNC:3433]) HSP 1 Score: 158.688 bits (400), Expect = 1.106e-45 Identity = 99/257 (38.52%), Postives = 151/257 (58.75%), Query Frame = 1 Query: 127 NIPSSQEQRPITYKTVSISPPNEFP--------ENAASTSLNTA--PIISSN-LIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 + +S + P TY +IS P E E A + N A P SN +IV+ RQ+GN V+ +R+V W FG++ PD+++ +++CALFLSL YH + P YI R++ +G + LRVLLV VDV D Q ++EL+++CI + TL+LAWS +EA RYLE++K +E KP D+L EKL ++ +++ LT++ S+NKTD++ L+ TFG ++E ++ + E L CPGLG K Sbjct: 48 TVDTSAQAAPQTYAEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLM------EKLE--QDFVSRVTECLTTVKSVNKTDSQTLLTTFG--------------SLEQLIAASREDLALCPGLGPQKA 282
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Human
Match: ERCC1 (ERCC excision repair 1, endonuclease non-catalytic subunit [Source:HGNC Symbol;Acc:HGNC:3433]) HSP 1 Score: 158.688 bits (400), Expect = 1.106e-45 Identity = 99/257 (38.52%), Postives = 151/257 (58.75%), Query Frame = 1 Query: 127 NIPSSQEQRPITYKTVSISPPNEFP--------ENAASTSLNTA--PIISSN-LIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 + +S + P TY +IS P E E A + N A P SN +IV+ RQ+GN V+ +R+V W FG++ PD+++ +++CALFLSL YH + P YI R++ +G + LRVLLV VDV D Q ++EL+++CI + TL+LAWS +EA RYLE++K +E KP D+L EKL ++ +++ LT++ S+NKTD++ L+ TFG ++E ++ + E L CPGLG K Sbjct: 48 TVDTSAQAAPQTYAEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLM------EKLE--QDFVSRVTECLTTVKSVNKTDSQTLLTTFG--------------SLEQLIAASREDLALCPGLGPQKA 282
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Human
Match: ERCC1 (ERCC excision repair 1, endonuclease non-catalytic subunit [Source:HGNC Symbol;Acc:HGNC:3433]) HSP 1 Score: 159.073 bits (401), Expect = 1.239e-45 Identity = 100/256 (39.06%), Postives = 152/256 (59.38%), Query Frame = 1 Query: 130 IPSSQEQRPITYKTVSISPPNEFP--------ENAASTSLNTA--PIISSN-LIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 + +S + P TY +IS P E E A + N A P SN +IV+ RQ+GN V+ +R+V W FG++ PD+++ +++CALFLSL YH + P YI R++ +G + LRVLLV VDV D Q ++EL+++CI + TL+LAWS +EA RYLE++K +E KP D+L EKL ++ +++ LT++ S+NKTD++ L+ TFG ++E ++ + E L CPGLG KV Sbjct: 49 VDTSAQAAPQTYAEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLM------EKLE--QDFVSRVTECLTTVKSVNKTDSQTLLTTFG--------------SLEQLIAASREDLALCPGLGPQKV 282
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Human
Match: ERCC1 (ERCC excision repair 1, endonuclease non-catalytic subunit [Source:HGNC Symbol;Acc:HGNC:3433]) HSP 1 Score: 149.828 bits (377), Expect = 7.988e-43 Identity = 90/219 (41.10%), Postives = 137/219 (62.56%), Query Frame = 1 Query: 127 NIPSSQEQRPITYKTVSISPPNEFP--------ENAASTSLNTA--PIISSN-LIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFG 750 + +S + P TY +IS P E E A + N A P SN +IV+ RQ+GN V+ +R+V W FG++ PD+++ +++CALFLSL YH + P YI R++ +G + LRVLLV VDV D Q ++EL+++CI + TL+LAWS +EA RYLE++K +E KP D+L EKL ++ +++ LT++ S+NKTD++ L+ TFG Sbjct: 48 TVDTSAQAAPQTYAEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLM------EKLE--QDFVSRVTECLTTVKSVNKTDSQTLLTTFG 258
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Human
Match: ERCC1 (ERCC excision repair 1, endonuclease non-catalytic subunit [Source:HGNC Symbol;Acc:HGNC:3433]) HSP 1 Score: 146.362 bits (368), Expect = 4.471e-42 Identity = 80/196 (40.82%), Postives = 125/196 (63.78%), Query Frame = 1 Query: 274 KGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALK 861 +GN V+ +R+V W FG++ PD+++ +++CALFLSL YH + P YI R++ +G + LRVLLV VDV D Q ++EL+++CI + TL+LAWS +EA RYLE++K +E KP D+L EKL ++ +++ LT++ S+NKTD++ L+ TFG ++E ++ + E L CPGLG K Sbjct: 36 RGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLM------EKLE--QDFVSRVTECLTTVKSVNKTDSQTLLTTFG--------------SLEQLIAASREDLALCPGLGPQK 209
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Celegans
Match: ercc-1 (ERCC (DNA excision repair protein) homolog [Source:UniProtKB/TrEMBL;Acc:Q93456]) HSP 1 Score: 99.3673 bits (246), Expect = 4.603e-24 Identity = 70/213 (32.86%), Postives = 112/213 (52.58%), Query Frame = 1 Query: 244 SSNLIVNHR-QKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIG-SLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINK----YVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 S L+VN R Q+GN V+ +R+VR+ +G+I PDF T ++LS YHK P Y++TRI G + Y +VLL ++ + +REL+ +C T ++ ++ +EAA Y+E FK + K I + I S+ +E + + FLT+ SI KTDA +L+ FG T++AI + + +CPG+G +K Sbjct: 48 SGALVVNRRRQEGNPVLKYVRNVRYEWGDIGPDFECGPTFGVVYLSFKYHKQHPEYVYTRINGNAENRYRNKVLLGYCNMEEPRHVLRELNMICFREAWTFVVVYTVEEAAEYIELFKTTQKKEITI-KKKAIDDGGDSSMSDERRRNREAAIGFLTAARSITKTDADRLLFHFG--------------TLQAISTASETSISACPGVGPIKA 245
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Celegans
Match: ercc-1 (ERCC (DNA excision repair protein) homolog [Source:UniProtKB/TrEMBL;Acc:Q93456]) HSP 1 Score: 99.3673 bits (246), Expect = 4.603e-24 Identity = 70/213 (32.86%), Postives = 112/213 (52.58%), Query Frame = 1 Query: 244 SSNLIVNHR-QKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIG-SLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINK----YVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 S L+VN R Q+GN V+ +R+VR+ +G+I PDF T ++LS YHK P Y++TRI G + Y +VLL ++ + +REL+ +C T ++ ++ +EAA Y+E FK + K I + I S+ +E + + FLT+ SI KTDA +L+ FG T++AI + + +CPG+G +K Sbjct: 48 SGALVVNRRRQEGNPVLKYVRNVRYEWGDIGPDFECGPTFGVVYLSFKYHKQHPEYVYTRINGNAENRYRNKVLLGYCNMEEPRHVLRELNMICFREAWTFVVVYTVEEAAEYIELFKTTQKKEITI-KKKAIDDGGDSSMSDERRRNREAAIGFLTAARSITKTDADRLLFHFG--------------TLQAISTASETSISACPGVGPIKA 245
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Fly
Match: Ercc1 (gene:FBgn0028434 transcript:FBtr0087448) HSP 1 Score: 126.331 bits (316), Expect = 3.698e-34 Identity = 66/169 (39.05%), Postives = 111/169 (65.68%), Query Frame = 1 Query: 253 LIVNHRQKGNGVIDCLRSVRWAF-GEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVL 756 ++V+ +Q+GN ++ + +V F +I PD+++ RTSC L+LSL YH + P YI R+K +G +YELRVLLV VD + ++ L+++ + +LT++LAW+ +EA + +E++K FE +PPD++ E+++S K ++ LT+I +NKTDA L+ TFG L Sbjct: 63 VLVHSKQRGNPILKSILNVPLEFRDDIVPDYVVGRTSCVLYLSLKYHNLNPDYICQRLKALGKMYELRVLLVQVDTPEPNNALKSLTRISLLADLTMMLAWNAEEAGKIIETYKQFEKRPPDLIM-ERVESNPHQ-------KLLAALTNIKPVNKTDAAALLHTFGNL 223
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Zebrafish
Match: ercc1 (excision repair cross-complementation group 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2606]) HSP 1 Score: 153.68 bits (387), Expect = 1.480e-43 Identity = 84/206 (40.78%), Postives = 131/206 (63.59%), Query Frame = 1 Query: 247 SNLIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 +++IV+ RQ+GN ++ +R+V W FGE+ PD+++ RT+CALFLS+ YH + P+Y+ R+K +G + LR+LLV VDV D ++EL+++CI + TL+LAWS +EA RYLE++K +E KP D+L E+++ LS + LT++ S+NKTDA L+ TF ++E I+ + E+L CPGLG K Sbjct: 140 NSIIVSPRQRGNPILKFVRNVPWEFGEVVPDYVLGRTTCALFLSVRYHNLNPNYVHERLKQLGQSFSLRILLVQVDVKDPHHALKELARICIMADCTLILAWSPEEAGRYLETYKSYEKKPADLLK-EQVEKNYLS-------QVTDCLTTVKSVNKTDAMTLLSTFS--------------SLEGIIKASKEELVLCPGLGPQKA 323
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Xenopus
Match: ercc1 (excision repair cross-complementation group 1 [Source:NCBI gene;Acc:100135224]) HSP 1 Score: 147.517 bits (371), Expect = 9.522e-42 Identity = 90/220 (40.91%), Postives = 133/220 (60.45%), Query Frame = 1 Query: 202 ENAASTSLNTAPIISSNLIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALK 861 E AA+ + + + SS +IV+ RQ+GN ++ LR+V W FG I PD+++ T CALFLSL YH + P YI R++ +G + LRVLLV VDV D ++EL+++CI ++ TL+L+WS +EAARYLE++K +E KP D+L K ++EK + +++ LT++ +NKTD+ L TFG L A + E L CPGLG K Sbjct: 64 EQAANQTTKSVGVRSS-IIVSTRQRGNSLLKYLRNVPWEFGNIIPDYVLGETCCALFLSLRYHNLNPEYIHLRLRSLGQSFALRVLLVQVDVKDPHFSLKELAKICILSDCTLILSWSPEEAARYLETYKCYEQKPADVL---KERTEK-----DLMSRMAECLTTVKYVNKTDSCTLFTTFGTLFDLAN--------------ASREDLSLCPGLGPQK 260
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Xenopus
Match: ercc1 (excision repair cross-complementation group 1 [Source:NCBI gene;Acc:100135224]) HSP 1 Score: 146.747 bits (369), Expect = 1.987e-41 Identity = 90/221 (40.72%), Postives = 133/221 (60.18%), Query Frame = 1 Query: 202 ENAASTSLNTAPIISSNLIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 E AA+ + + + SS +IV+ RQ+GN ++ LR+V W FG I PD+++ T CALFLSL YH + P YI R++ +G + LRVLLV VDV D ++EL+++CI ++ TL+L+WS +EAARYLE++K +E KP D+L K ++EK + +++ LT++ +NKTD+ L TFG L A + E L CPGLG K Sbjct: 65 EQAANQTTKSVGVRSS-IIVSTRQRGNSLLKYLRNVPWEFGNIIPDYVLGETCCALFLSLRYHNLNPEYIHLRLRSLGQSFALRVLLVQVDVKDPHFSLKELAKICILSDCTLILSWSPEEAARYLETYKCYEQKPADVL---KERTEK-----DLMSRMAECLTTVKYVNKTDSCTLFTTFGTLFDLAN--------------ASREDLSLCPGLGPQKA 262
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Xenopus
Match: ercc1 (excision repair cross-complementation group 1 [Source:NCBI gene;Acc:100135224]) HSP 1 Score: 147.132 bits (370), Expect = 2.998e-41 Identity = 90/221 (40.72%), Postives = 133/221 (60.18%), Query Frame = 1 Query: 202 ENAASTSLNTAPIISSNLIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 E AA+ + + + SS +IV+ RQ+GN ++ LR+V W FG I PD+++ T CALFLSL YH + P YI R++ +G + LRVLLV VDV D ++EL+++CI ++ TL+L+WS +EAARYLE++K +E KP D+L K ++EK + +++ LT++ +NKTD+ L TFG L A + E L CPGLG K Sbjct: 85 EQAANQTTKSVGVRSS-IIVSTRQRGNSLLKYLRNVPWEFGNIIPDYVLGETCCALFLSLRYHNLNPEYIHLRLRSLGQSFALRVLLVQVDVKDPHFSLKELAKICILSDCTLILSWSPEEAARYLETYKCYEQKPADVL---KERTEK-----DLMSRMAECLTTVKYVNKTDSCTLFTTFGTLFDLAN--------------ASREDLSLCPGLGPQKA 282
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Mouse
Match: Ercc1 (excision repair cross-complementing rodent repair deficiency, complementation group 1 [Source:MGI Symbol;Acc:MGI:95412]) HSP 1 Score: 159.073 bits (401), Expect = 5.725e-46 Identity = 89/207 (43.00%), Postives = 133/207 (64.25%), Query Frame = 1 Query: 244 SSNLIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 S+++IV+ RQ+GN V+ +R+V W FGE+ PD+++ +++CALFLSL YH + P YI R++ +G + LRVLLV VDV D Q ++EL+++CI + TL+LAWS +EA RYLE++K +E KP D+L EK++ LS A E LT++ S+NKTD++ L+ TFG ++E + + E L CPGLG K Sbjct: 98 SNSIIVSPRQRGNPVLKFVRNVPWEFGEVIPDYVLGQSTCALFLSLRYHNLHPDYIHERLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLVLAWSAEEAGRYLETYKAYEQKPADLLM-EKLEQNFLSRATE-------CLTTVKSVNKTDSQTLLATFG--------------SLEQLFTASREDLALCPGLGPQKA 282
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Mouse
Match: Ercc1 (excision repair cross-complementing rodent repair deficiency, complementation group 1 [Source:MGI Symbol;Acc:MGI:95412]) HSP 1 Score: 130.954 bits (328), Expect = 8.046e-36 Identity = 67/137 (48.91%), Postives = 101/137 (73.72%), Query Frame = 1 Query: 244 SSNLIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLS 654 S+++IV+ RQ+GN V+ +R+V W FGE+ PD+++ +++CALFLSL YH + P YI R++ +G + LRVLLV VDV D Q ++EL+++CI + TL+LAWS +EA RYLE++K +E KP D+L EK++ LS Sbjct: 98 SNSIIVSPRQRGNPVLKFVRNVPWEFGEVIPDYVLGQSTCALFLSLRYHNLHPDYIHERLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLVLAWSAEEAGRYLETYKAYEQKPADLLM-EKLEQNFLS 233
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Mouse
Match: Ercc1 (excision repair cross-complementing rodent repair deficiency, complementation group 1 [Source:MGI Symbol;Acc:MGI:95412]) HSP 1 Score: 79.337 bits (194), Expect = 6.398e-18 Identity = 32/70 (45.71%), Postives = 52/70 (74.29%), Query Frame = 1 Query: 244 SSNLIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELR 453 S+++IV+ RQ+GN V+ +R+V W FGE+ PD+++ +++CALFLSL YH + P YI R++ +G + LR Sbjct: 22 SNSIIVSPRQRGNPVLKFVRNVPWEFGEVIPDYVLGQSTCALFLSLRYHNLHPDYIHERLQSLGKNFALR 91
BLAST of DNA excision repair protein ERCC-1 vs. UniProt/SwissProt
Match: sp|Q1LZ75|ERCC1_BOVIN (DNA excision repair protein ERCC-1 OS=Bos taurus OX=9913 GN=ERCC1 PE=2 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 2.243e-47 Identity = 100/275 (36.36%), Postives = 160/275 (58.18%), Query Frame = 1 Query: 73 IIEKGGLFQMYKAGKIDCNIPSSQEQRPITYKTVSIS-PPNEF-------PENAASTSLNTAP---IISSNLIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 ++ G ++++ + + +S P TY ++S PP PE A + N AP S+++IV+ RQ+GN V+ +R+V W FG++ PD+++ +++CALFLSL YH + P YI R++ +G Y LRVLLV VDV D Q ++EL+++CI + TL+LAWS +EA RYLE++K +E KP D+L EKL ++ +++ LT++ S+NKTD++ L+ TFG ++E ++ + E L CPGLG K Sbjct: 26 VVPPPGAKPLFRSTRSLPTVETSPPPGPQTYAEYALSGPPGGAEATRPVGPEPLAEETPNQAPKPGAKSNSIIVSPRQRGNPVLRFVRNVPWEFGDVLPDYVLGQSTCALFLSLRYHNLHPDYIHQRLQSLGKSYALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLM------EKLE--QDFVSRVTECLTTVKSVNKTDSQTLLTTFG--------------SLEQLIAASREDLSLCPGLGPQKA 278
BLAST of DNA excision repair protein ERCC-1 vs. UniProt/SwissProt
Match: sp|P07903|ERCC1_MOUSE (DNA excision repair protein ERCC-1 OS=Mus musculus OX=10090 GN=Ercc1 PE=2 SV=2) HSP 1 Score: 159.073 bits (401), Expect = 4.005e-45 Identity = 89/207 (43.00%), Postives = 133/207 (64.25%), Query Frame = 1 Query: 244 SSNLIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 S+++IV+ RQ+GN V+ +R+V W FGE+ PD+++ +++CALFLSL YH + P YI R++ +G + LRVLLV VDV D Q ++EL+++CI + TL+LAWS +EA RYLE++K +E KP D+L EK++ LS A E LT++ S+NKTD++ L+ TFG ++E + + E L CPGLG K Sbjct: 98 SNSIIVSPRQRGNPVLKFVRNVPWEFGEVIPDYVLGQSTCALFLSLRYHNLHPDYIHERLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLVLAWSAEEAGRYLETYKAYEQKPADLLM-EKLEQNFLSRATE-------CLTTVKSVNKTDSQTLLATFG--------------SLEQLFTASREDLALCPGLGPQKA 282
BLAST of DNA excision repair protein ERCC-1 vs. UniProt/SwissProt
Match: sp|P07992|ERCC1_HUMAN (DNA excision repair protein ERCC-1 OS=Homo sapiens OX=9606 GN=ERCC1 PE=1 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 5.313e-45 Identity = 99/257 (38.52%), Postives = 151/257 (58.75%), Query Frame = 1 Query: 127 NIPSSQEQRPITYKTVSISPPNEFP--------ENAASTSLNTA--PIISSN-LIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 + +S + P TY +IS P E E A + N A P SN +IV+ RQ+GN V+ +R+V W FG++ PD+++ +++CALFLSL YH + P YI R++ +G + LRVLLV VDV D Q ++EL+++CI + TL+LAWS +EA RYLE++K +E KP D+L EKL ++ +++ LT++ S+NKTD++ L+ TFG ++E ++ + E L CPGLG K Sbjct: 48 TVDTSAQAAPQTYAEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLM------EKLE--QDFVSRVTECLTTVKSVNKTDSQTLLTTFG--------------SLEQLIAASREDLALCPGLGPQKA 282
BLAST of DNA excision repair protein ERCC-1 vs. UniProt/SwissProt
Match: sp|Q06182|SWI10_SCHPO (Mating-type switching protein swi10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=swi10 PE=1 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 7.240e-39 Identity = 83/209 (39.71%), Postives = 126/209 (60.29%), Query Frame = 1 Query: 238 IISSNLIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 + + +++VN RQKGN ++ +R+V W + +I PDF+M C+LFLSL YH + P YI++RI +G Y LR+LL+LVDV + I+EL + I N TL+LAWS++EAARYLE++K +EN P ++ EK ++ LS + SFLTSI INK+D+ L+ FG ++E +++ ++L G G KV Sbjct: 38 VTAHSILVNPRQKGNPLLPHVRNVPWEYTDIVPDFVMGTGICSLFLSLKYHHLHPEYIYSRISKLGKSYNLRILLILVDVENHQASIQELVKTSIVNQYTLILAWSSEEAARYLETYKAYENMSPALIM-EKPSTDYLSQVQ-------SFLTSIRGINKSDSLSLLSKFG--------------SLERALVASRDELEQLEGWGPTKV 224
BLAST of DNA excision repair protein ERCC-1 vs. UniProt/SwissProt
Match: sp|Q9MA98|ERCC1_ARATH (DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana OX=3702 GN=ERCC1 PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 6.303e-36 Identity = 83/217 (38.25%), Postives = 131/217 (60.37%), Query Frame = 1 Query: 253 LIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKVLLGLFFTFIIEFR 903 ++V+HRQKGN ++ +R+V+W F +I PD+++ + SCAL+LSL YH + P Y++ RI+ + ++L V+L VDV D+ + + E+++ + ++ TLL AWS E ARYLE+ K++ENKP D++ G+ + ++ LS + LTSI +NK+D L TFG L+ I+A M E L CPG+G KV L+ TF F+ Sbjct: 126 ILVSHRQKGNPLLKHIRNVKWVFSDIIPDYVLGQNSCALYLSLRYHLLHPDYLYFRIRELQKNFKLSVVLCHVDVEDTVKPLLEVTKTALLHDCTLLCAWSMTECARYLETIKVYENKPADLIQGQ-MDTDYLS-------RLNHSLTSIRHVNKSDVVTLGSTFG----------SLAHIIDASM----EDLARCPGIGERKV-KRLYDTFHEPFK 319
BLAST of DNA excision repair protein ERCC-1 vs. TrEMBL
Match: A0A397H2E6 (UPF0029 domain-containing protein OS=Diversispora epigaea OX=1348612 GN=Glove_393g47 PE=4 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 1.054e-47 Identity = 97/209 (46.41%), Postives = 136/209 (65.07%), Query Frame = 1 Query: 241 ISSN-LIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 ISSN +IVN QKGN ++ C+R+V W +GEI PD+++ +T+CALFLSL YH++ P YIF RI+ + Y LR++L+LVDV + IREL++LC+ NN T++LAWS +EA RYLE+ K FE+K PD++ EK++ + L+ K +T I SINKTD L +FG +++ IM + FEQL CPGLG KV Sbjct: 180 ISSNAIIVNSCQKGNPILQCIRNVPWEYGEIVPDYLLGQTTCALFLSLKYHRLHPEYIFNRIEKLAHHYLLRIMLILVDVEIHQEPIRELTKLCVLNNFTIILAWSQEEAGRYLETCKAFEHKSPDMIM-EKVEDDYLA-------KLTHCMTQIKSINKTDVITLASSFG--------------SLKKIMSTSFEQLTLCPGLGHQKV 366
BLAST of DNA excision repair protein ERCC-1 vs. TrEMBL
Match: A0A3Q7V4N8 (DNA excision repair protein ERCC-1 isoform X2 OS=Ursus arctos horribilis OX=116960 GN=ERCC1 PE=4 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 4.741e-47 Identity = 103/271 (38.01%), Postives = 161/271 (59.41%), Query Frame = 1 Query: 85 GGLFQMYKAGKIDCNIPSSQEQRPITYKTVSIS-PPN-------EFPENAASTSLNTAPII---SSNLIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 G+ ++K+ + + +S + P TY +IS PP PE A + N AP + SS++IV+ RQ+GN V+ +R+V W FG++ PD+++ +++CALFLSL YH + P YI R++ +G + LRVLLV VDV D Q ++EL+++CI + TL+LAWS +EA RYLE++K +E KP D+L EKL ++ +++ LT++ S+NKTD++ L+ TFG ++E +M + E L CPGLG K Sbjct: 30 AGVKPLFKSTRSLPTVETSPQAAPQTYAEYAISGPPGGAGAPHPTGPEPLAGETPNQAPKLGAKSSSIIVSPRQRGNPVLKFVRNVPWEFGDVLPDYVLGQSTCALFLSLRYHNLHPDYIHERLQSLGKSFALRVLLVQVDVKDPQQALKELAKMCILADCTLVLAWSPEEAGRYLETYKAYEQKPADLLM------EKLE--QDFVSRVTECLTTVKSVNKTDSQTLLTTFG--------------SLEQLMAASREDLALCPGLGPQKA 278
BLAST of DNA excision repair protein ERCC-1 vs. TrEMBL
Match: A0A3Q7UNZ0 (DNA excision repair protein ERCC-1 isoform X1 OS=Ursus arctos horribilis OX=116960 GN=ERCC1 PE=4 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 7.751e-47 Identity = 103/271 (38.01%), Postives = 161/271 (59.41%), Query Frame = 1 Query: 85 GGLFQMYKAGKIDCNIPSSQEQRPITYKTVSIS-PPN-------EFPENAASTSLNTAPII---SSNLIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 G+ ++K+ + + +S + P TY +IS PP PE A + N AP + SS++IV+ RQ+GN V+ +R+V W FG++ PD+++ +++CALFLSL YH + P YI R++ +G + LRVLLV VDV D Q ++EL+++CI + TL+LAWS +EA RYLE++K +E KP D+L EKL ++ +++ LT++ S+NKTD++ L+ TFG ++E +M + E L CPGLG K Sbjct: 42 AGVKPLFKSTRSLPTVETSPQAAPQTYAEYAISGPPGGAGAPHPTGPEPLAGETPNQAPKLGAKSSSIIVSPRQRGNPVLKFVRNVPWEFGDVLPDYVLGQSTCALFLSLRYHNLHPDYIHERLQSLGKSFALRVLLVQVDVKDPQQALKELAKMCILADCTLVLAWSPEEAGRYLETYKAYEQKPADLLM------EKLE--QDFVSRVTECLTTVKSVNKTDSQTLLTTFG--------------SLEQLMAASREDLALCPGLGPQKA 290
BLAST of DNA excision repair protein ERCC-1 vs. TrEMBL
Match: A0A452S1U3 (ERCC excision repair 1, endonuclease non-catalytic subunit OS=Ursus americanus OX=9643 GN=ERCC1 PE=4 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.201e-46 Identity = 103/271 (38.01%), Postives = 160/271 (59.04%), Query Frame = 1 Query: 85 GGLFQMYKAGKIDCNIPSSQEQRPITYKTVSIS-PPN-------EFPENAASTSLNTAP---IISSNLIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 G+ ++K+ + + +S + P TY +IS PP PE A + N AP SS++IV+ RQ+GN V+ +R+V W FG++ PD+++ +++CALFLSL YH + P YI R++ +G + LRVLLV VDV D Q ++EL+++CI + TL+LAWS +EA RYLE++K +E KP D+L EKL ++ +++ LT++ S+NKTD++ L+ TFG ++E +M + E L CPGLG K Sbjct: 30 AGVKPLFKSTRSLPTVETSPQAAPQTYAEYAISGPPGGAGAPHPTGPEPLAGETPNQAPKPGAKSSSIIVSPRQRGNPVLKFVRNVPWEFGDVLPDYVLGQSTCALFLSLRYHNLHPDYIHERLQSLGKSFALRVLLVQVDVKDPQQALKELAKMCILADCTLVLAWSPEEAGRYLETYKAYEQKPADLLM------EKLE--QDFVSRVTECLTTVKSVNKTDSQTLLTTFG--------------SLEQLMAASREDLALCPGLGPQKA 278
BLAST of DNA excision repair protein ERCC-1 vs. TrEMBL
Match: A0A384BK83 (DNA excision repair protein ERCC-1 OS=Ursus maritimus OX=29073 GN=ERCC1 PE=4 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.201e-46 Identity = 103/271 (38.01%), Postives = 160/271 (59.04%), Query Frame = 1 Query: 85 GGLFQMYKAGKIDCNIPSSQEQRPITYKTVSIS-PPN-------EFPENAASTSLNTAP---IISSNLIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 G+ ++K+ + + +S + P TY +IS PP PE A + N AP SS++IV+ RQ+GN V+ +R+V W FG++ PD+++ +++CALFLSL YH + P YI R++ +G + LRVLLV VDV D Q ++EL+++CI + TL+LAWS +EA RYLE++K +E KP D+L EKL ++ +++ LT++ S+NKTD++ L+ TFG ++E +M + E L CPGLG K Sbjct: 30 AGVKPLFKSTRSLPTVETSPQAAPQTYAEYAISGPPGGAGAPHPTGPEPLAGETPNQAPKPGAKSSSIIVSPRQRGNPVLKFVRNVPWEFGDVLPDYVLGQSTCALFLSLRYHNLHPDYIHERLQSLGKSFALRVLLVQVDVKDPQQALKELAKMCILADCTLVLAWSPEEAGRYLETYKAYEQKPADLLM------EKLE--QDFVSRVTECLTTVKSVNKTDSQTLLTTFG--------------SLEQLMAASREDLALCPGLGPQKA 278
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Cavefish
Match: ercc1 (ERCC excision repair 1, endonuclease non-catalytic subunit [Source:NCBI gene;Acc:103040846]) HSP 1 Score: 154.451 bits (389), Expect = 9.517e-44 Identity = 87/206 (42.23%), Postives = 130/206 (63.11%), Query Frame = 1 Query: 247 SNLIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 +++IV+ RQ+GN ++ +RSV W F E+ PD+++ RT+CALFLSL YH + P+YI R+K +G + LRVLLV VDV D ++EL+++CI + TL+LAWS +EA RYLE++K +E KP D+L E+++ + LS K LT++ S+NKTDA L+ F ++E I+ + E+L CPGLG K Sbjct: 159 NSIIVSPRQRGNPILKFVRSVPWEFAEVVPDYVLGRTTCALFLSLRYHNLNPNYIHERLKQLGQTFTLRVLLVQVDVKDPHHALKELARICIMADCTLILAWSPEEAGRYLETYKSYEKKPADLLK-EQVEKDYLS-------KVTDCLTTVKSVNKTDAITLLSAFS--------------SLEGIINASKEELVLCPGLGPQKA 342
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Sea Lamprey
Match: ercc1 (excision repair cross-complementation group 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2606]) HSP 1 Score: 152.525 bits (384), Expect = 7.627e-45 Identity = 89/211 (42.18%), Postives = 130/211 (61.61%), Query Frame = 1 Query: 244 SSNLIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAW----SNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 S++L+VN RQ+GN V+ +R+V W ++ PD++M +TSCALFLSL YH + P+Y+ R+K +G ++LRVLLV VDV D ++EL+++CI TL+LAW S +E ARYLE++K +ENKP D+L E+++ + LS + LT+I S+NKTD L+ TFG ++ IM + E L CPGLG K Sbjct: 58 SNSLLVNPRQRGNPVLKFVRNVPWEIADVVPDYVMGQTSCALFLSLRYHNLNPNYVHERLKQLGQAFDLRVLLVQVDVKDPHHALKELAKMCILAECTLILAWRHADSPEEVARYLETYKAYENKPADLLK-ERVEQDYLS-------RMTDCLTTIKSVNKTDVITLLNTFG--------------SLANIMEASKEDLSLCPGLGPRKA 246
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Yeast
Match: RAD10 (Single-stranded DNA endonuclease (with Rad1p); cleaves single-stranded DNA during nucleotide excision repair and double-strand break repair; subunit of Nucleotide Excision Repair Factor 1 (NEF1); homolog of human ERCC1 protein [Source:SGD;Acc:S000004560]) HSP 1 Score: 57.7658 bits (138), Expect = 1.837e-10 Identity = 49/171 (28.65%), Postives = 92/171 (53.80%), Query Frame = 1 Query: 142 QEQRPITYKTVSIS---------PPNEFPENAASTSLNTA-PIISS----NLIVNHRQKGNGVIDCLRSVRWAF------GEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKM 594 Q+Q P T + ++ + P E+ ++ A+ N P S+ ++VN QK N +++ L+S W + I D+++ R LFL+L+YHK+ YI R++ + S E +L+ +VD +S + ++++LC+ N TLLLA++ ++AA+Y+E + Sbjct: 42 QQQEPQTSRRINSNQVINAFNQQKPEEWTDSKATDDYNRKRPFRSTRPGKTVLVNTTQKENPLLNHLKSTNWRYVSSTGINMIYYDYLV-RGRSVLFLTLTYHKLYVDYISRRMQPL-SRNENNILIFIVDDNNSEDTLNDITKLCMFNGFTLLLAFNFEQAAKYIEYLNL 210
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Medaka
Match: ercc1 (ERCC excision repair 1, endonuclease non-catalytic subunit [Source:NCBI gene;Acc:101168825]) HSP 1 Score: 153.295 bits (386), Expect = 1.762e-43 Identity = 87/206 (42.23%), Postives = 132/206 (64.08%), Query Frame = 1 Query: 247 SNLIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 S++IV+ RQ+GN ++ +RSV W FG++ PD+++ +T+CALFLSL YH + P+YI R+K +G+ + LRVLLV VDV D ++EL+++ + + TL+LAWS +EA RYLE++K +E KP D+L E+++ + LS K LT++ SINKTDA L+ TF ++E I+ + E+L CPGLG K Sbjct: 139 SSIIVSPRQRGNPILKFVRSVPWEFGDVVPDYVLGQTTCALFLSLRYHNLNPNYIHERLKQLGNSFTLRVLLVQVDVKDPHHALKELARIGVMADCTLILAWSPEEAGRYLETYKSYEKKPADLLK-EQVEKDYLS-------KVTDCLTTVKSINKTDAITLLSTFS--------------SVEGIISASKEELVLCPGLGPQKA 322
BLAST of DNA excision repair protein ERCC-1 vs. Planmine SMEST
Match: SMESG000048855.1 (SMESG000048855.1) HSP 1 Score: 515.383 bits (1326), Expect = 0.000e+0 Identity = 266/281 (94.66%), Postives = 266/281 (94.66%), Query Frame = 1 Query: 22 MSTEDHFDHIASHIESPIIEKGGLFQMYKAGKIDCNIPSSQEQRPITYKTVSISPPNEFPENAASTSLNTAPIISSNLIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRXXXXXXXXXXSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFGVLLIPAEFIYCLSQTIEAIMLSDFEQLRSCPGLGALKV 864 MSTEDHFDHIASHIESPIIEKGGLFQMYKAGKIDCNIPSSQEQRPITYKTVSISPPNEFPENAASTSLNTAPIISSNLIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRVLLVLVDVVDSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFG TIEAIMLSDFEQLRSCPGLGALK Sbjct: 1 MSTEDHFDHIASHIESPIIEKGGLFQMYKAGKIDCNIPSSQEQRPITYKTVSISPPNEFPENAASTSLNTAPIISSNLIVNHRQKGNGVIDCLRSVRWAFGEIEPDFIMSRTSCALFLSLSYHKVKPSYIFTRIKGIGSLYELRVLLVLVDVVDSTQEIRELSQLCISNNLTLLLAWSNDEAARYLESFKMFENKPPDILTGEKIKSEKLSAAEEEINKYVSFLTSIASINKTDARKLMETFG--------------TIEAIMLSDFEQLRSCPGLGALKA 267 The following BLAST results are available for this feature:
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 2
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 3
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 3
BLAST of DNA excision repair protein ERCC-1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of DNA excision repair protein ERCC-1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of DNA excision repair protein ERCC-1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of DNA excision repair protein ERCC-1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30028315 ID=SMED30028315|Name=DNA excision repair protein ERCC-1|organism=Schmidtea mediterranea sexual|type=transcript|length=982bpback to top protein sequence of SMED30028315-orf-1 >SMED30028315-orf-1 ID=SMED30028315-orf-1|Name=SMED30028315-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=315bp MSTEDHFDHIASHIESPIIEKGGLFQMYKAGKIDCNIPSSQEQRPITYKTback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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