RRM domain-containing protein

Overview


Name	RRM domain-containing protein
Smed ID	SMED30028255
Length (bp)	1200

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RRM domain-containing protein (SMED30028255) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RRM domain-containing protein (SMED30028255) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30028255

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 8

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
head region	SMED30028255	SMESG000071928.1	SmedASXL_012553	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
nervous system	SMED30028255	SMESG000071928.1	dd_Smed_v4_36288_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30028255	SMESG000071928.1	dd_Smed_v4_36288_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30028255	SMESG000071928.1	dd_Smed_v4_36288_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
non-ciliated neuron	SMED30028255	SMESG000071928.1	dd_Smed_v4_36288_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
head region	SMED30028255	SMESG000071928.1	dd_Smed_v6_36288_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
photoreceptor neuron	SMED30028255	SMESG000071928.1	SMED30028255	smed_20140614	PMID:22884275 Lapan et al., 2012
head region	SMED30028255	SMESG000071928.1	OX_Smed_1.0.11766	ox_Smed_v2	PMID:24238224 Kao et al., 2013

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Human
Match: RBPMS (RNA binding protein, mRNA processing factor [Source:HGNC Symbol;Acc:HGNC:19097])

HSP 1 Score: 118.242 bits (295), Expect = 8.481e-31
Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 3

Query:  288 NNGNHGD-----SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            NNG   +     S+A+   EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFV+F++R++AE+A   L GI+FDP+  Q +RLEFA+ NTKM KNK+  +
Sbjct:    2 NNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Human
Match: RBPMS (RNA binding protein, mRNA processing factor [Source:HGNC Symbol;Acc:HGNC:19097])

HSP 1 Score: 117.857 bits (294), Expect = 9.170e-31
Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 3

Query:  288 NNGNHGD-----SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            NNG   +     S+A+   EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFV+F++R++AE+A   L GI+FDP+  Q +RLEFA+ NTKM KNK+  +
Sbjct:    2 NNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Human
Match: RBPMS (RNA binding protein, mRNA processing factor [Source:HGNC Symbol;Acc:HGNC:19097])

HSP 1 Score: 117.857 bits (294), Expect = 9.170e-31
Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 3

Query:  288 NNGNHGD-----SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            NNG   +     S+A+   EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFV+F++R++AE+A   L GI+FDP+  Q +RLEFA+ NTKM KNK+  +
Sbjct:    2 NNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Human
Match: RBPMS (RNA binding protein, mRNA processing factor [Source:HGNC Symbol;Acc:HGNC:19097])

HSP 1 Score: 118.242 bits (295), Expect = 1.760e-30
Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 3

Query:  288 NNGNHGD-----SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            NNG   +     S+A+   EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFV+F++R++AE+A   L GI+FDP+  Q +RLEFA+ NTKM KNK+  +
Sbjct:    2 NNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Human
Match: RBPMS (RNA binding protein, mRNA processing factor [Source:HGNC Symbol;Acc:HGNC:19097])

HSP 1 Score: 117.472 bits (293), Expect = 2.418e-30
Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 3

Query:  288 NNGNHGD-----SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            NNG   +     S+A+   EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFV+F++R++AE+A   L GI+FDP+  Q +RLEFA+ NTKM KNK+  +
Sbjct:    2 NNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: mec-8 (Mec-8 protein [Source:UniProtKB/TrEMBL;Acc:G5ECJ4])

HSP 1 Score: 120.168 bits (300), Expect = 8.050e-31
Identity = 59/115 (51.30%), Postives = 86/115 (74.78%), Query Frame = 3

Query:  267 LCSNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNK 611
            L S ++  + N   S+A++ ++ VRT+FVSGLPMDAK RELYLLFR  +G++ A LK   KNGKPT+PVGFVTF ++  A+ A + L+G++FDP+  Q++RLE A++NTK+ + K
Sbjct:    8 LASAASMESLNSVSSEATNPSQ-VRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSKNGKPTSPVGFVTFLSQQDAQDARKMLQGVRFDPECAQVLRLELAKSNTKVARPK 121

[Close]

Query:  267 LCSNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNK 611
            L S ++  + N   S+A++ ++ VRT+FVSGLPMDAK RELYLLFR  +G++ A LK   KNGKPT+PVGFVTF ++  A+ A + L+G++FDP+  Q++RLE A++NTK+ + K
Sbjct:    8 LASAASMESLNSVSSEATNPSQ-VRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSKNGKPTSPVGFVTFLSQQDAQDARKMLQGVRFDPECAQVLRLELAKSNTKVARPK 121

[Close]

Query:  267 LCSNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNK 611
            L S ++  + N   S+A++ ++ VRT+FVSGLPMDAK RELYLLFR  +G++ A LK   KNGKPT+PVGFVTF ++  A+ A + L+G++FDP+  Q++RLE A++NTK+ + K
Sbjct:    8 LASAASMESLNSVSSEATNPSQ-VRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSKNGKPTSPVGFVTFLSQQDAQDARKMLQGVRFDPECAQVLRLELAKSNTKVARPK 121

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: cpo (gene:FBgn0263995 transcript:FBtr0330279)

HSP 1 Score: 131.339 bits (329), Expect = 4.261e-33
Identity = 60/100 (60.00%), Postives = 79/100 (79.00%), Query Frame = 3

Query:  312 DASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNK 611
            + +S  EEVRT+FVSGLPMDAK RELYLLFR+++G++ + LK   KNGK  +PVGFVTF TR  AE+A + L+G++FDPD  Q +RLEFA++NTK+ K K
Sbjct:  433 NTASNEEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSKPK 532

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: cpo (gene:FBgn0263995 transcript:FBtr0330280)

HSP 1 Score: 131.339 bits (329), Expect = 4.261e-33
Identity = 60/100 (60.00%), Postives = 79/100 (79.00%), Query Frame = 3

Query:  312 DASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNK 611
            + +S  EEVRT+FVSGLPMDAK RELYLLFR+++G++ + LK   KNGK  +PVGFVTF TR  AE+A + L+G++FDPD  Q +RLEFA++NTK+ K K
Sbjct:  433 NTASNEEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSKPK 532

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: cpo (gene:FBgn0263995 transcript:FBtr0330278)

HSP 1 Score: 131.339 bits (329), Expect = 4.261e-33
Identity = 60/100 (60.00%), Postives = 79/100 (79.00%), Query Frame = 3

Query:  312 DASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNK 611
            + +S  EEVRT+FVSGLPMDAK RELYLLFR+++G++ + LK   KNGK  +PVGFVTF TR  AE+A + L+G++FDPD  Q +RLEFA++NTK+ K K
Sbjct:  433 NTASNEEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSKPK 532

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: cpo (gene:FBgn0263995 transcript:FBtr0330276)

HSP 1 Score: 131.339 bits (329), Expect = 4.261e-33
Identity = 60/100 (60.00%), Postives = 79/100 (79.00%), Query Frame = 3

Query:  312 DASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNK 611
            + +S  EEVRT+FVSGLPMDAK RELYLLFR+++G++ + LK   KNGK  +PVGFVTF TR  AE+A + L+G++FDPD  Q +RLEFA++NTK+ K K
Sbjct:  433 NTASNEEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSKPK 532

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: cpo (gene:FBgn0263995 transcript:FBtr0330269)

HSP 1 Score: 131.339 bits (329), Expect = 4.261e-33
Identity = 60/100 (60.00%), Postives = 79/100 (79.00%), Query Frame = 3

Query:  312 DASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNK 611
            + +S  EEVRT+FVSGLPMDAK RELYLLFR+++G++ + LK   KNGK  +PVGFVTF TR  AE+A + L+G++FDPD  Q +RLEFA++NTK+ K K
Sbjct:  433 NTASNEEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSKPK 532

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: rbpms2a (RNA binding protein, mRNA processing factor 2a [Source:ZFIN;Acc:ZDB-GENE-040718-106])

HSP 1 Score: 114.775 bits (286), Expect = 8.978e-30
Identity = 57/98 (58.16%), Postives = 73/98 (74.49%), Query Frame = 3

Query:  321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614
            S  EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFVTF++R+ AE+A   L GI+FDP+S Q +RLEFA+ NTKM K+K+
Sbjct:   14 SLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNGIRFDPESPQTLRLEFAKANTKMAKSKL 106

[Close]

Query:  321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614
            S  EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFVTF++R+ AE+A   L GI+FDP+S Q +RLEFA+ NTKM K+K+
Sbjct:   14 SLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNGIRFDPESPQTLRLEFAKANTKMAKSKL 106

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: rbpms2b (RNA binding protein, mRNA processing factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-741])

HSP 1 Score: 112.464 bits (280), Expect = 5.104e-29
Identity = 55/101 (54.46%), Postives = 73/101 (72.28%), Query Frame = 3

Query:  321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            S  EEVRT+FVSGLP D K RELYLLFR FKG++ + +K   K      PVGFVTF++R+ AE+A   L G++FDP++ Q +RLEFA+ NTKM K+K+  +
Sbjct:   14 SLEEEVRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNGVRFDPENPQTLRLEFAKANTKMAKSKLMGT 109

[Close]

Query:  321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            S  EEVRT+FVSGLP D K RELYLLFR FKG++ + +K   K      PVGFVTF++R+ AE+A   L G++FDP++ Q +RLEFA+ NTKM K+K+  +
Sbjct:   14 SLEEEVRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNGVRFDPENPQTLRLEFAKANTKMAKSKLMGT 109

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: rbpms2b (RNA binding protein, mRNA processing factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-741])

HSP 1 Score: 112.079 bits (279), Expect = 1.124e-28
Identity = 55/101 (54.46%), Postives = 73/101 (72.28%), Query Frame = 3

Query:  321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            S  EEVRT+FVSGLP D K RELYLLFR FKG++ + +K   K      PVGFVTF++R+ AE+A   L G++FDP++ Q +RLEFA+ NTKM K+K+  +
Sbjct:   14 SLEEEVRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNGVRFDPENPQTLRLEFAKANTKMAKSKLMGT 109

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: rbpms (RNA binding protein with multiple splicing [Source:NCBI gene;Acc:100038229])

HSP 1 Score: 114.39 bits (285), Expect = 1.495e-29
Identity = 58/117 (49.57%), Postives = 80/117 (68.38%), Query Frame = 3

Query:  273 SNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            SN  +  G+    + S   EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFV+F++R++AE+A   L GI+FDP+  Q +RLEFA+ NTKM K+K+  +
Sbjct:    3 SNIAEKEGSQ--DEISLPEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKSKLVGT 112

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: rbpms (RNA binding protein with multiple splicing [Source:NCBI gene;Acc:100038229])

HSP 1 Score: 114.39 bits (285), Expect = 1.636e-29
Identity = 58/117 (49.57%), Postives = 80/117 (68.38%), Query Frame = 3

Query:  273 SNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            SN  +  G+    + S   EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFV+F++R++AE+A   L GI+FDP+  Q +RLEFA+ NTKM K+K+  +
Sbjct:    3 SNIAEKEGSQ--DEISLPEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKSKLVGT 112

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: rbpms (RNA binding protein with multiple splicing [Source:NCBI gene;Acc:100038229])

HSP 1 Score: 114.775 bits (286), Expect = 3.689e-29
Identity = 58/117 (49.57%), Postives = 80/117 (68.38%), Query Frame = 3

Query:  273 SNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            SN  +  G+    + S   EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFV+F++R++AE+A   L GI+FDP+  Q +RLEFA+ NTKM K+K+  +
Sbjct:    3 SNIAEKEGSQ--DEISLPEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKSKLVGT 112

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: RBPMS2 (RNA binding protein with multiple splicing 2 [Source:NCBI gene;Acc:100038109])

HSP 1 Score: 109.383 bits (272), Expect = 1.161e-27
Identity = 55/99 (55.56%), Postives = 71/99 (71.72%), Query Frame = 3

Query:  318 SSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614
            S++   VRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFVTF+ R  AE+A   L GI+FDP++ Q +RLEFA+ NTKM KNK+
Sbjct:   11 SASGPNVRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDNRAGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKNKL 104

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: RBPMS2 (RNA binding protein with multiple splicing 2 [Source:NCBI gene;Acc:100038109])

HSP 1 Score: 108.612 bits (270), Expect = 2.950e-27
Identity = 54/93 (58.06%), Postives = 68/93 (73.12%), Query Frame = 3

Query:  336 VRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614
            VRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFVTF+ R  AE+A   L GI+FDP++ Q +RLEFA+ NTKM KNK+
Sbjct:   19 VRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDNRAGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKNKL 106

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Rbpms (RNA binding protein gene with multiple splicing [Source:MGI Symbol;Acc:MGI:1334446])

HSP 1 Score: 116.316 bits (290), Expect = 2.272e-30
Identity = 57/105 (54.29%), Postives = 77/105 (73.33%), Query Frame = 3

Query:  309 SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            S+A+   EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFV+F++R++AE+A   L GI+FDP+  Q +RLEFA+ NTKM KNK+  +
Sbjct:   14 SEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Rbpms (RNA binding protein gene with multiple splicing [Source:MGI Symbol;Acc:MGI:1334446])

HSP 1 Score: 116.316 bits (290), Expect = 3.016e-30
Identity = 57/105 (54.29%), Postives = 77/105 (73.33%), Query Frame = 3

Query:  309 SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            S+A+   EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFV+F++R++AE+A   L GI+FDP+  Q +RLEFA+ NTKM KNK+  +
Sbjct:   14 SEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Rbpms (RNA binding protein gene with multiple splicing [Source:MGI Symbol;Acc:MGI:1334446])

HSP 1 Score: 116.316 bits (290), Expect = 3.016e-30
Identity = 57/105 (54.29%), Postives = 77/105 (73.33%), Query Frame = 3

Query:  309 SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            S+A+   EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFV+F++R++AE+A   L GI+FDP+  Q +RLEFA+ NTKM KNK+  +
Sbjct:   14 SEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Rbpms (RNA binding protein gene with multiple splicing [Source:MGI Symbol;Acc:MGI:1334446])

HSP 1 Score: 116.316 bits (290), Expect = 3.016e-30
Identity = 57/105 (54.29%), Postives = 77/105 (73.33%), Query Frame = 3

Query:  309 SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            S+A+   EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFV+F++R++AE+A   L GI+FDP+  Q +RLEFA+ NTKM KNK+  +
Sbjct:   14 SEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Rbpms (RNA binding protein gene with multiple splicing [Source:MGI Symbol;Acc:MGI:1334446])

HSP 1 Score: 115.546 bits (288), Expect = 8.663e-30
Identity = 57/105 (54.29%), Postives = 77/105 (73.33%), Query Frame = 3

Query:  309 SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            S+A+   EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFV+F++R++AE+A   L GI+FDP+  Q +RLEFA+ NTKM KNK+  +
Sbjct:   14 SEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113

[Close]

BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q01617|CPO_DROME (Protein couch potato OS=Drosophila melanogaster OX=7227 GN=cpo PE=2 SV=4)

HSP 1 Score: 131.339 bits (329), Expect = 4.271e-32
Identity = 60/100 (60.00%), Postives = 79/100 (79.00%), Query Frame = 3

Query:  312 DASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNK 611
            + +S  EEVRT+FVSGLPMDAK RELYLLFR+++G++ + LK   KNGK  +PVGFVTF TR  AE+A + L+G++FDPD  Q +RLEFA++NTK+ K K
Sbjct:  433 NTASNEEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSKPK 532

[Close]

BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q93062|RBPMS_HUMAN (RNA-binding protein with multiple splicing OS=Homo sapiens OX=9606 GN=RBPMS PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.404e-30
Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 3

Query:  288 NNGNHGD-----SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            NNG   +     S+A+   EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFV+F++R++AE+A   L GI+FDP+  Q +RLEFA+ NTKM KNK+  +
Sbjct:    2 NNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113

[Close]

BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9WVB0|RBPMS_MOUSE (RNA-binding protein with multiple splicing OS=Mus musculus OX=10090 GN=Rbpms PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.110e-29
Identity = 57/105 (54.29%), Postives = 77/105 (73.33%), Query Frame = 3

Query:  309 SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            S+A+   EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFV+F++R++AE+A   L GI+FDP+  Q +RLEFA+ NTKM KNK+  +
Sbjct:   14 SEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113

[Close]

BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q6DH13|RBP2A_DANRE (RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.778e-29
Identity = 57/98 (58.16%), Postives = 73/98 (74.49%), Query Frame = 3

Query:  321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614
            S  EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFVTF++R+ AE+A   L GI+FDP+S Q +RLEFA+ NTKM K+K+
Sbjct:   14 SLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNGIRFDPESPQTLRLEFAKANTKMAKSKL 106

[Close]

BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9W6I1|RBPS2_CHICK (RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.540e-27
Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 3

Query:  327 NEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614
             EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFVTF++R  AE+A   L GI+FDP++ Q +RLEFA+ NTKM K+K+
Sbjct:   18 EEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRAGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKL 108

[Close]

BLAST of RRM domain-containing protein vs. TrEMBL
Match: G7YDR0 (Protein couch potato (Fragment) OS=Clonorchis sinensis OX=79923 GN=CLF_105578 PE=4 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 3.192e-41
Identity = 78/132 (59.09%), Postives = 100/132 (75.76%), Query Frame = 3

Query:  246 ISDGCNVLCSNSTDN------NGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            +S+   ++ S S D+      NG   D++      +VRTIFVSGLP+DAK RELYLLFR FKG+Q++TLKP GKNGKPTAPVGFVTF++R QAE A+ KL+G+KFDP+ +QLMRLEFARTNTK+ K K  ++
Sbjct:   50 LSENSMMVLSQSVDSLHTLATNGGVDDTE-----HQVRTIFVSGLPLDAKPRELYLLFRGFKGYQSSTLKPAGKNGKPTAPVGFVTFDSREQAEDAMRKLQGVKFDPEGNQLMRLEFARTNTKVTKPKFISA 176

[Close]

BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A4S2LLM9 (RRM domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_007910 PE=4 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.588e-40
Identity = 77/132 (58.33%), Postives = 100/132 (75.76%), Query Frame = 3

Query:  246 ISDGCNVLCSNSTDN------NGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            +S+   ++ S S D+      NG   D++      +VRT+FVSGLP+DAK RELYLLFR FKG+Q++TLKP GKNGKPTAPVGFVTF++R QAE A+ KL+G+KFDP+ +QLMRLEFARTNTK+ K K  ++
Sbjct:   50 LSENSMMVLSQSVDSLHTLATNGGVDDTE-----HQVRTVFVSGLPLDAKPRELYLLFRGFKGYQSSTLKPAGKNGKPTAPVGFVTFDSREQAEDAMRKLQGVKFDPEGNQLMRLEFARTNTKVTKPKFISA 176

[Close]

BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A419PL37 (Protein couch potato (Fragment) OS=Clonorchis sinensis OX=79923 GN=cpo PE=4 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 7.359e-40
Identity = 71/98 (72.45%), Postives = 86/98 (87.76%), Query Frame = 3

Query:  330 EEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
             +VRTIFVSGLP+DAK RELYLLFR FKG+Q++TLKP GKNGKPTAPVGFVTF++R QAE A+ KL+G+KFDP+ +QLMRLEFARTNTK+ K K  ++
Sbjct:    1 HQVRTIFVSGLPLDAKPRELYLLFRGFKGYQSSTLKPAGKNGKPTAPVGFVTFDSREQAEDAMRKLQGVKFDPEGNQLMRLEFARTNTKVTKPKFISA 98

[Close]

BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A4Z2DUC2 (Protein couch potato OS=Schistosoma japonicum OX=6182 GN=EWB00_005100 PE=4 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.227e-39
Identity = 74/117 (63.25%), Postives = 92/117 (78.63%), Query Frame = 3

Query:  264 VLCSNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614
            ++ S S D+    G ++      +VRT+FVSGLP+DAK RELYLLFRSFKG+ ++TLKP GKNGK TAPVGFVTFE+R QAE A+ KL+G+KFDPD +Q MRLEFAR+NTK+ K KI
Sbjct:   69 MILSQSIDSIHTVGTNNGEGTEHQVRTLFVSGLPLDAKPRELYLLFRSFKGYLSSTLKPAGKNGKLTAPVGFVTFESREQAEEAMTKLQGVKFDPDGNQHMRLEFARSNTKVTKPKI 185

[Close]

BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A5J4P0Y0 (RRM domain-containing protein OS=Paragonimus westermani OX=34504 GN=DEA37_0006615 PE=4 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.371e-39
Identity = 76/117 (64.96%), Postives = 92/117 (78.63%), Query Frame = 3

Query:  315 ASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNSHIYNSGLNQQLSAG 665
            A  +  +VRT+FVSGLP+DAK RELYLLFRSFKG+Q++TLKP GKNGK TAPVGFVTFE+R QAE A+ KL+G+KFDP+ +Q MRLEFARTNTK+ K K   S     G NQ ++A 
Sbjct:  136 ADESEHQVRTVFVSGLPLDAKPRELYLLFRSFKGYQSSTLKPAGKNGKLTAPVGFVTFESREQAEEAMTKLQGVKFDPEGNQHMRLEFARTNTKVTKPKFNTSPGGFCGSNQTMNAA 252

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: rbpms (RNA binding protein, mRNA processing factor [Source:NCBI gene;Acc:103026653])

HSP 1 Score: 117.857 bits (294), Expect = 5.431e-31
Identity = 57/105 (54.29%), Postives = 78/105 (74.29%), Query Frame = 3

Query:  309 SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            S+ SSA EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFV+F++R++AE+A   L G++FDP+  Q +RLEFA+ NTKM K+K+  +
Sbjct:   12 SEYSSAEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGVRFDPEIPQTLRLEFAKANTKMAKSKLVGT 111

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: rbpms2a (RNA-binding protein with multiple splicing 2 [Source:NCBI gene;Acc:103041081])

HSP 1 Score: 112.849 bits (281), Expect = 4.686e-29
Identity = 56/98 (57.14%), Postives = 73/98 (74.49%), Query Frame = 3

Query:  321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614
            S  EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFVTF++R+ AE+A   L GI+FDP++ Q +RLEFA+ NTKM K+K+
Sbjct:   14 SLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKL 106

[Close]

Query:  321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614
            S  EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFVTF++R+ AE+A   L GI+FDP++ Q +RLEFA+ NTKM K+K+
Sbjct:   14 SLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKL 106

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: rbpms2b (RNA-binding protein with multiple splicing 2-like [Source:NCBI gene;Acc:103022941])

HSP 1 Score: 111.694 bits (278), Expect = 9.093e-29
Identity = 55/101 (54.46%), Postives = 73/101 (72.28%), Query Frame = 3

Query:  321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            S +EEVRT+FVSGLP D K RELYLLFR FKG++ + +K   K      PVGFVTF+ R+ AE+A   L G++FDP++ Q +RLEFA+ NTKM K+K+  +
Sbjct:   15 SLDEEVRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDCRSGAEAAKNALNGVRFDPENPQTLRLEFAKANTKMAKSKLMGT 110

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: rbpms2b (RNA-binding protein with multiple splicing 2-like [Source:NCBI gene;Acc:103022941])

HSP 1 Score: 111.694 bits (278), Expect = 1.182e-28
Identity = 55/98 (56.12%), Postives = 72/98 (73.47%), Query Frame = 3

Query:  321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614
            S +EEVRT+FVSGLP D K RELYLLFR FKG++ + +K   K      PVGFVTF+ R+ AE+A   L G++FDP++ Q +RLEFA+ NTKM K+K+
Sbjct:   15 SLDEEVRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDCRSGAEAAKNALNGVRFDPENPQTLRLEFAKANTKMAKSKL 107

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000003641.1 (pep scaffold:Pmarinus_7.0:GL480715:5373:16108:1 gene:ENSPMAG00000003321.1 transcript:ENSPMAT00000003641.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 106.301 bits (264), Expect = 1.498e-27
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 3

Query:  333 EVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614
            +VRT+FVSGLP+D K RELYLLFR FKG++ + +    K      PVGFVTF +R QAE A   L G++FDP+S Q +RLEFAR NTK  +N++
Sbjct:    1 QVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLILVTSKQ-----PVGFVTFYSRAQAEDAKVSLNGVRFDPESPQTLRLEFARANTKTSRNRL 89

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: rbpms2a (RNA binding protein, mRNA processing factor 2a [Source:ZFIN;Acc:ZDB-GENE-040718-106])

HSP 1 Score: 67.3958 bits (163), Expect = 6.407e-14
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 3

Query:  468 PVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            PVGF  F++R++AE+A   L GI+FDPD  Q +RLEFA+ NTKM KNK+  +
Sbjct:    2 PVGFAMFDSRSEAEAAKNALNGIRFDPDIPQTLRLEFAKANTKMAKNKLLGT 53

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Match: EDO49830 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7REQ1])

HSP 1 Score: 100.908 bits (250), Expect = 2.458e-26
Identity = 50/90 (55.56%), Postives = 66/90 (73.33%), Query Frame = 3

Query:  336 VRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLK 605
            VRT+FVSGLP+D K RE+YLLFRSFKG++ + LK   K      PV FVTFE ++ A  A  +L+G++FDPD  Q +RLEFA++NTK+ K
Sbjct:    1 VRTLFVSGLPLDVKPREVYLLFRSFKGYEGSLLKLTDKQ-----PVAFVTFENKDCASDAKSELQGVQFDPDVSQTLRLEFAKSNTKVSK 85

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000005176.2 (RNA binding protein, mRNA processing factor [Source:NCBI gene;Acc:101164593])

HSP 1 Score: 113.62 bits (283), Expect = 1.999e-29
Identity = 55/116 (47.41%), Postives = 80/116 (68.97%), Query Frame = 3

Query:  276 NSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
            N+      +  ++ ++  EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFV+F++R++AE+A   L G++FDP+  Q +RLEFA+ NTKM KNK+  +
Sbjct:    2 NNNKTEKENETTEFTNHEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGVRFDPEIPQTLRLEFAKANTKMAKNKLVGT 112

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: rbpms2a (RNA-binding protein with multiple splicing 2 [Source:NCBI gene;Acc:101164709])

HSP 1 Score: 114.39 bits (285), Expect = 5.648e-29
Identity = 57/98 (58.16%), Postives = 73/98 (74.49%), Query Frame = 3

Query:  321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614
            S  EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFVTF++R+ AE+A   L GI+FDP+S Q +RLEFA+ NTKM K+K+
Sbjct:   79 SIEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNGIRFDPESPQTLRLEFAKANTKMAKSKL 171

[Close]

Query:  321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614
            S  EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFVTF++R+ AE+A   L GI+FDP+S Q +RLEFA+ NTKM K+K+
Sbjct:   79 SIEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNGIRFDPESPQTLRLEFAKANTKMAKSKL 171

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000005173.2 (RNA binding protein, mRNA processing factor [Source:NCBI gene;Acc:101164593])

HSP 1 Score: 110.153 bits (274), Expect = 4.570e-28
Identity = 57/120 (47.50%), Postives = 78/120 (65.00%), Query Frame = 3

Query:  273 SNSTDNNGNHGDSDASSANEE---VRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623
             N T    NH + +      E   VRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFV+F++R++AE+A   L G++FDP+  Q +RLEFA+ NTKM KNK+  +
Sbjct:    9 ENETTEFTNHEEENPPLHPREGRKVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGVRFDPEIPQTLRLEFAKANTKMAKNKLVGT 123

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: rbpms2a (RNA-binding protein with multiple splicing 2 [Source:NCBI gene;Acc:101164709])

HSP 1 Score: 77.0258 bits (188), Expect = 1.451e-16
Identity = 40/71 (56.34%), Postives = 50/71 (70.42%), Query Frame = 3

Query:  321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEG 533
            S  EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K   K      PVGFVTF++R+ AE+A   L G
Sbjct:   79 SIEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNG 144

[Close]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000071928.1 (SMESG000071928.1)

HSP 1 Score: 569.696 bits (1467), Expect = 0.000e+0
Identity = 282/299 (94.31%), Postives = 284/299 (94.98%), Query Frame = 3

Query:  204 MTDFFLDSKSKVFPISDGCNVLCSNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNSHIYNSGLNQQLSAGSIDANLLNSDMNLFLGYDGRLAFFAQSAFSPFGPALLPFNGTTFRPPNCSFAPIAVAAPNGLINGNNIKIPNSSLTPGSVTGTHSLSPFIGPQSGLLGETISQVLMHPSQNGLLYVQPFSIDLNEISAQPLETQFRMNSWNSNGE 1100
            MTDFFLDSKSKVFPISDGCNVLCSNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNK+CNSHIYNSGLNQQLSAGSIDANLLNSDMNLFLGYDGRLAFFAQSAFSPFGPALLPFNGTTFRPPNCSFAPIAVAAPNGL+N               VTGTHSLSPFIGPQSGLLGETISQVLMHPSQNGLLYVQPFSIDLNEISAQPLETQFRMNSWNSNGE
Sbjct:    1 MTDFFLDSKSKVFPISDGCNVLCSNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKMCNSHIYNSGLNQQLSAGSIDANLLNSDMNLFLGYDGRLAFFAQSAFSPFGPALLPFNGTTFRPPNCSFAPIAVAAPNGLLN---------------VTGTHSLSPFIGPQSGLLGETISQVLMHPSQNGLLYVQPFSIDLNEISAQPLETQFRMNSWNSNGE 284

[Close]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000064331.1 (SMESG000064331.1)

HSP 1 Score: 153.295 bits (386), Expect = 3.921e-43
Identity = 107/274 (39.05%), Postives = 149/274 (54.38%), Query Frame = 3

Query:  246 ISDGCNVLCSNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNSHIYNSGLNQQLSAGSIDANLLNSDMNLFLGYDGRLAFFAQSAFSPFGPALLPFNGTTFRP---PNCSFAPIAVAAPNGLINGNNIK---IPNSSLTPGSVTGTHSLS-PFIG-PQSGLLGETISQVLMHP---SQNGLLYVQPFSIDL 1034
            +SD   +  S+S D+    G +     N++VRT+F+SGLPMD K RELYLLFR +KG+ ++TLKP GKNGK TAPVGFVTF +R +AE A+ +L+G+KFDPDS Q MRLEFAR+NTK+ + KI    +     N  L   +I        +  F G+D    F A ++++  G        T   P   PN   + +    P   +NG  +    +P+  L    +T   SL+ P++G P S + G TIS   + P   S  GLL       DL
Sbjct:   45 LSDENMMNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQGVKFDPDSAQQMRLEFARSNTKVTRPKIGLFSLSQPFFNAALPPHAI--------IQQFPGFDHGSLFSADTSWANLGYDNAILTATGILPSATPNLHPSLLQALMPQNGLNGGVVSTNCLPSQILNQNIITSQSSLTNPYLGSPASSINGATISYPGLVPLGFSTVGLLSYNALMKDL 310

[Close]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000064331.1 (SMESG000064331.1)

HSP 1 Score: 153.295 bits (386), Expect = 7.194e-43
Identity = 107/274 (39.05%), Postives = 149/274 (54.38%), Query Frame = 3

Query:  246 ISDGCNVLCSNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNSHIYNSGLNQQLSAGSIDANLLNSDMNLFLGYDGRLAFFAQSAFSPFGPALLPFNGTTFRP---PNCSFAPIAVAAPNGLINGNNIK---IPNSSLTPGSVTGTHSLS-PFIG-PQSGLLGETISQVLMHP---SQNGLLYVQPFSIDL 1034
            +SD   +  S+S D+    G +     N++VRT+F+SGLPMD K RELYLLFR +KG+ ++TLKP GKNGK TAPVGFVTF +R +AE A+ +L+G+KFDPDS Q MRLEFAR+NTK+ + KI    +     N  L   +I        +  F G+D    F A ++++  G        T   P   PN   + +    P   +NG  +    +P+  L    +T   SL+ P++G P S + G TIS   + P   S  GLL       DL
Sbjct:   70 LSDENMMNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQGVKFDPDSAQQMRLEFARSNTKVTRPKIGLFSLSQPFFNAALPPHAI--------IQQFPGFDHGSLFSADTSWANLGYDNAILTATGILPSATPNLHPSLLQALMPQNGLNGGVVSTNCLPSQILNQNIITSQSSLTNPYLGSPASSINGATISYPGLVPLGFSTVGLLSYNALMKDL 335

[Close]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000064331.1 (SMESG000064331.1)

HSP 1 Score: 104.375 bits (259), Expect = 1.120e-26
Identity = 51/95 (53.68%), Postives = 69/95 (72.63%), Query Frame = 3

Query:  246 ISDGCNVLCSNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLE 530
            +SD   +  S+S D+    G +     N++VRT+F+SGLPMD K RELYLLFR +KG+ ++TLKP GKNGK TAPVGFVTF +R +AE A+ +L+
Sbjct:   45 LSDENMMNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQ 139

The following BLAST results are available for this feature:

BLAST of RRM domain-containing protein vs. Ensembl Human
BLAST of RRM domain-containing protein vs. Ensembl Celegans
BLAST of RRM domain-containing protein vs. Ensembl Fly
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
BLAST of RRM domain-containing protein vs. Ensembl Mouse
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
BLAST of RRM domain-containing protein vs. TrEMBL
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
BLAST of RRM domain-containing protein vs. Ensembl Yeast
BLAST of RRM domain-containing protein vs. Ensembl Nematostella
BLAST of RRM domain-containing protein vs. Ensembl Medaka
BLAST of RRM domain-containing protein vs. Planmine SMEST

BLAST of RRM domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RBPMS	8.481e-31	51.28	RNA binding protein, mRNA processing factor [Sourc...	[more]
RBPMS	9.170e-31	51.28	RNA binding protein, mRNA processing factor [Sourc...	[more]
RBPMS	9.170e-31	51.28	RNA binding protein, mRNA processing factor [Sourc...	[more]
RBPMS	1.760e-30	51.28	RNA binding protein, mRNA processing factor [Sourc...	[more]
RBPMS	2.418e-30	51.28	RNA binding protein, mRNA processing factor [Sourc...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3


Match Name	E-value	Identity	Description
mec-8	8.050e-31	51.30	Mec-8 protein [Source:UniProtKB/TrEMBL;Acc:G5ECJ4...	[more]
mec-8	8.050e-31	51.30	Mec-8 protein [Source:UniProtKB/TrEMBL;Acc:G5ECJ4...	[more]
mec-8	8.050e-31	51.30	Mec-8 protein [Source:UniProtKB/TrEMBL;Acc:G5ECJ4...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
cpo	4.261e-33	60.00	gene:FBgn0263995 transcript:FBtr0330279	[more]
cpo	4.261e-33	60.00	gene:FBgn0263995 transcript:FBtr0330280	[more]
cpo	4.261e-33	60.00	gene:FBgn0263995 transcript:FBtr0330278	[more]
cpo	4.261e-33	60.00	gene:FBgn0263995 transcript:FBtr0330276	[more]
cpo	4.261e-33	60.00	gene:FBgn0263995 transcript:FBtr0330269	[more]

BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rbpms2a	8.978e-30	58.16	RNA binding protein, mRNA processing factor 2a [So...	[more]
rbpms2a	8.978e-30	58.16	RNA binding protein, mRNA processing factor 2a [So...	[more]
rbpms2b	5.104e-29	54.46	RNA binding protein, mRNA processing factor 2b [So...	[more]
rbpms2b	5.104e-29	54.46	RNA binding protein, mRNA processing factor 2b [So...	[more]
rbpms2b	1.124e-28	54.46	RNA binding protein, mRNA processing factor 2b [So...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rbpms	1.495e-29	49.57	RNA binding protein with multiple splicing [Source...	[more]
rbpms	1.636e-29	49.57	RNA binding protein with multiple splicing [Source...	[more]
rbpms	3.689e-29	49.57	RNA binding protein with multiple splicing [Source...	[more]
RBPMS2	1.161e-27	55.56	RNA binding protein with multiple splicing 2 [Sour...	[more]
RBPMS2	2.950e-27	58.06	RNA binding protein with multiple splicing 2 [Sour...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Rbpms	2.272e-30	54.29	RNA binding protein gene with multiple splicing [S...	[more]
Rbpms	3.016e-30	54.29	RNA binding protein gene with multiple splicing [S...	[more]
Rbpms	3.016e-30	54.29	RNA binding protein gene with multiple splicing [S...	[more]
Rbpms	3.016e-30	54.29	RNA binding protein gene with multiple splicing [S...	[more]
Rbpms	8.663e-30	54.29	RNA binding protein gene with multiple splicing [S...	[more]

BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q01617\|CPO_DROME	4.271e-32	60.00	Protein couch potato OS=Drosophila melanogaster OX...	[more]
sp\|Q93062\|RBPMS_HUMAN	4.404e-30	51.28	RNA-binding protein with multiple splicing OS=Homo...	[more]
sp\|Q9WVB0\|RBPMS_MOUSE	2.110e-29	54.29	RNA-binding protein with multiple splicing OS=Mus ...	[more]
sp\|Q6DH13\|RBP2A_DANRE	6.778e-29	58.16	RNA-binding protein, mRNA-processing factor 2a OS=...	[more]
sp\|Q9W6I1\|RBPS2_CHICK	1.540e-27	57.29	RNA-binding protein with multiple splicing 2 OS=Ga...	[more]

BLAST of RRM domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
G7YDR0	3.192e-41	59.09	Protein couch potato (Fragment) OS=Clonorchis sine...	[more]
A0A4S2LLM9	1.588e-40	58.33	RRM domain-containing protein OS=Opisthorchis feli...	[more]
A0A419PL37	7.359e-40	72.45	Protein couch potato (Fragment) OS=Clonorchis sine...	[more]
A0A4Z2DUC2	3.227e-39	63.25	Protein couch potato OS=Schistosoma japonicum OX=6...	[more]
A0A5J4P0Y0	3.371e-39	64.96	RRM domain-containing protein OS=Paragonimus weste...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rbpms	5.431e-31	54.29	RNA binding protein, mRNA processing factor [Sourc...	[more]
rbpms2a	4.686e-29	57.14	RNA-binding protein with multiple splicing 2 [Sour...	[more]
rbpms2a	4.686e-29	57.14	RNA-binding protein with multiple splicing 2 [Sour...	[more]
rbpms2b	9.093e-29	54.46	RNA-binding protein with multiple splicing 2-like ...	[more]
rbpms2b	1.182e-28	56.12	RNA-binding protein with multiple splicing 2-like ...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2


Match Name	E-value	Identity	Description
ENSPMAT00000003641.1	1.498e-27	55.32	pep scaffold:Pmarinus_7.0:GL480715:5373:16108:1 ge...	[more]
rbpms2a	6.407e-14	55.77	RNA binding protein, mRNA processing factor 2a [So...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO49830	2.458e-26	55.56	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSORLT00000005176.2	1.999e-29	47.41	RNA binding protein, mRNA processing factor [Sourc...	[more]
rbpms2a	5.648e-29	58.16	RNA-binding protein with multiple splicing 2 [Sour...	[more]
rbpms2a	5.648e-29	58.16	RNA-binding protein with multiple splicing 2 [Sour...	[more]
ENSORLT00000005173.2	4.570e-28	47.50	RNA binding protein, mRNA processing factor [Sourc...	[more]
rbpms2a	1.451e-16	56.34	RNA-binding protein with multiple splicing 2 [Sour...	[more]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4


Match Name	E-value	Identity	Description
SMESG000071928.1	0.000e+0	94.31	SMESG000071928.1	[more]
SMESG000064331.1	3.921e-43	39.05	SMESG000064331.1	[more]
SMESG000064331.1	7.194e-43	39.05	SMESG000064331.1	[more]
SMESG000064331.1	1.120e-26	53.68	SMESG000064331.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30028255 ID=SMED30028255|Name=RRM domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1200bp
AATGAAAAATGTTTTATTTCTAACATCGGGTGAATTGTGAAGAAGAAAGA
AATCAAGCAAAAATTCAAACGAGACAAACGAAAAATCGAATTAGACTTTT
TCTCCCATAAGCTTTTATAATTTAACCAAACGAGAGATATCTTTACAAAT
CGTTTTTGTTGATTGAAATATTTTTTCGTGCTTGAAAAAATTTATTTTTT
ATCATGACGGATTTTTTTCTCGATTCAAAATCAAAAGTTTTTCCAATCAG
TGACGGATGCAACGTACTGTGTTCCAATAGTACCGATAACAATGGCAACC
ACGGCGACAGTGATGCCTCCTCTGCGAACGAAGAGGTGAGAACAATTTTC
GTAAGCGGCCTGCCAATGGACGCCAAACAGAGAGAATTATATTTATTATT
TCGGAGTTTTAAAGGTTTTCAAACGGCCACTCTGAAACCTCCGGGGAAAA
ATGGAAAGCCTACCGCTCCGGTTGGATTCGTCACTTTTGAAACTCGAAAT
CAAGCTGAAAGTGCAATTGAAAAACTTGAGGGAATCAAATTTGATCCAGA
TTCAGATCAGTTAATGAGATTAGAATTCGCCCGAACAAATACAAAAATGT
TGAAAAACAAAATATGTAACAGTCATATTTATAATTCCGGTTTAAATCAG
CAGTTATCTGCAGGTTCTATTGATGCAAACTTATTAAATTCTGACATGAA
TCTATTTCTTGGTTATGACGGTCGACTAGCCTTTTTTGCCCAATCTGCCT
TTTCGCCTTTCGGGCCAGCTTTGTTGCCTTTTAATGGAACTACATTTAGA
CCACCTAATTGTTCTTTTGCTCCTATCGCTGTTGCTGCACCTAATGGACT
GATAAATGGTAACAACATTAAAATTCCGAATTCCTCTTTGACTCCGGGAT
CAGTAACAGGAACGCATTCTCTTTCACCATTCATAGGCCCACAATCTGGA
TTGCTTGGAGAAACAATAAGTCAAGTTTTAATGCATCCAAGTCAGAATGG
TTTATTATATGTACAACCATTTTCAATTGACCTCAATGAAATCAGTGCTC
AACCCTTAGAGACCCAATTCAGAATGAATTCATGGAATTCAAACGGGGAG
TGAAAACTGCCAATAATCAAGGCCTCATATTATTTCAATTTTATTACATT
TGATGAATCATATCAAAATCCGATTATCAAAATAGTTTTTATTATCAAAC

protein sequence of SMED30028255-orf-1

>SMED30028255-orf-1 ID=SMED30028255-orf-1|Name=SMED30028255-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=300bp
MTDFFLDSKSKVFPISDGCNVLCSNSTDNNGNHGDSDASSANEEVRTIFV
SGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQ
AESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNSHIYNSGLNQQ
LSAGSIDANLLNSDMNLFLGYDGRLAFFAQSAFSPFGPALLPFNGTTFRP
PNCSFAPIAVAAPNGLINGNNIKIPNSSLTPGSVTGTHSLSPFIGPQSGL
LGETISQVLMHPSQNGLLYVQPFSIDLNEISAQPLETQFRMNSWNSNGE*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **molecular function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000017	photoreceptor neuron
PLANA:0000099	neuron
PLANA:0000418	head

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 47..124 e-value: 5.5E-6 score: 35.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 48..114 e-value: 2.7E-12 score: 46.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 46..128 score: 13.26
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 39..132 e-value: 1.6E-25 score: 90.9
None	No IPR available	PANTHER	PTHR10501:SF41	PROTEIN COUCH POTATO	coord: 35..152
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 35..152
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 30..137

Main menu

RRM domain-containing protein

Zeng et. al., 2018

▻ Overview

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 8

Owlery

blazegraph-runner