RRM domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny AppSub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30028255 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Homology
BLAST of RRM domain-containing protein vs. Ensembl Human
Match: RBPMS (RNA binding protein, mRNA processing factor [Source:HGNC Symbol;Acc:HGNC:19097]) HSP 1 Score: 118.242 bits (295), Expect = 8.481e-31 Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 3 Query: 288 NNGNHGD-----SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 NNG + S+A+ EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFV+F++R++AE+A L GI+FDP+ Q +RLEFA+ NTKM KNK+ + Sbjct: 2 NNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113
BLAST of RRM domain-containing protein vs. Ensembl Human
Match: RBPMS (RNA binding protein, mRNA processing factor [Source:HGNC Symbol;Acc:HGNC:19097]) HSP 1 Score: 117.857 bits (294), Expect = 9.170e-31 Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 3 Query: 288 NNGNHGD-----SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 NNG + S+A+ EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFV+F++R++AE+A L GI+FDP+ Q +RLEFA+ NTKM KNK+ + Sbjct: 2 NNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113
BLAST of RRM domain-containing protein vs. Ensembl Human
Match: RBPMS (RNA binding protein, mRNA processing factor [Source:HGNC Symbol;Acc:HGNC:19097]) HSP 1 Score: 117.857 bits (294), Expect = 9.170e-31 Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 3 Query: 288 NNGNHGD-----SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 NNG + S+A+ EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFV+F++R++AE+A L GI+FDP+ Q +RLEFA+ NTKM KNK+ + Sbjct: 2 NNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113
BLAST of RRM domain-containing protein vs. Ensembl Human
Match: RBPMS (RNA binding protein, mRNA processing factor [Source:HGNC Symbol;Acc:HGNC:19097]) HSP 1 Score: 118.242 bits (295), Expect = 1.760e-30 Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 3 Query: 288 NNGNHGD-----SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 NNG + S+A+ EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFV+F++R++AE+A L GI+FDP+ Q +RLEFA+ NTKM KNK+ + Sbjct: 2 NNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113
BLAST of RRM domain-containing protein vs. Ensembl Human
Match: RBPMS (RNA binding protein, mRNA processing factor [Source:HGNC Symbol;Acc:HGNC:19097]) HSP 1 Score: 117.472 bits (293), Expect = 2.418e-30 Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 3 Query: 288 NNGNHGD-----SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 NNG + S+A+ EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFV+F++R++AE+A L GI+FDP+ Q +RLEFA+ NTKM KNK+ + Sbjct: 2 NNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113
BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: mec-8 (Mec-8 protein [Source:UniProtKB/TrEMBL;Acc:G5ECJ4]) HSP 1 Score: 120.168 bits (300), Expect = 8.050e-31 Identity = 59/115 (51.30%), Postives = 86/115 (74.78%), Query Frame = 3 Query: 267 LCSNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNK 611 L S ++ + N S+A++ ++ VRT+FVSGLPMDAK RELYLLFR +G++ A LK KNGKPT+PVGFVTF ++ A+ A + L+G++FDP+ Q++RLE A++NTK+ + K Sbjct: 8 LASAASMESLNSVSSEATNPSQ-VRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSKNGKPTSPVGFVTFLSQQDAQDARKMLQGVRFDPECAQVLRLELAKSNTKVARPK 121
BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: mec-8 (Mec-8 protein [Source:UniProtKB/TrEMBL;Acc:G5ECJ4]) HSP 1 Score: 120.168 bits (300), Expect = 8.050e-31 Identity = 59/115 (51.30%), Postives = 86/115 (74.78%), Query Frame = 3 Query: 267 LCSNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNK 611 L S ++ + N S+A++ ++ VRT+FVSGLPMDAK RELYLLFR +G++ A LK KNGKPT+PVGFVTF ++ A+ A + L+G++FDP+ Q++RLE A++NTK+ + K Sbjct: 8 LASAASMESLNSVSSEATNPSQ-VRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSKNGKPTSPVGFVTFLSQQDAQDARKMLQGVRFDPECAQVLRLELAKSNTKVARPK 121
BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: mec-8 (Mec-8 protein [Source:UniProtKB/TrEMBL;Acc:G5ECJ4]) HSP 1 Score: 120.168 bits (300), Expect = 8.050e-31 Identity = 59/115 (51.30%), Postives = 86/115 (74.78%), Query Frame = 3 Query: 267 LCSNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNK 611 L S ++ + N S+A++ ++ VRT+FVSGLPMDAK RELYLLFR +G++ A LK KNGKPT+PVGFVTF ++ A+ A + L+G++FDP+ Q++RLE A++NTK+ + K Sbjct: 8 LASAASMESLNSVSSEATNPSQ-VRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSKNGKPTSPVGFVTFLSQQDAQDARKMLQGVRFDPECAQVLRLELAKSNTKVARPK 121
BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: cpo (gene:FBgn0263995 transcript:FBtr0330279) HSP 1 Score: 131.339 bits (329), Expect = 4.261e-33 Identity = 60/100 (60.00%), Postives = 79/100 (79.00%), Query Frame = 3 Query: 312 DASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNK 611 + +S EEVRT+FVSGLPMDAK RELYLLFR+++G++ + LK KNGK +PVGFVTF TR AE+A + L+G++FDPD Q +RLEFA++NTK+ K K Sbjct: 433 NTASNEEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSKPK 532
BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: cpo (gene:FBgn0263995 transcript:FBtr0330280) HSP 1 Score: 131.339 bits (329), Expect = 4.261e-33 Identity = 60/100 (60.00%), Postives = 79/100 (79.00%), Query Frame = 3 Query: 312 DASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNK 611 + +S EEVRT+FVSGLPMDAK RELYLLFR+++G++ + LK KNGK +PVGFVTF TR AE+A + L+G++FDPD Q +RLEFA++NTK+ K K Sbjct: 433 NTASNEEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSKPK 532
BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: cpo (gene:FBgn0263995 transcript:FBtr0330278) HSP 1 Score: 131.339 bits (329), Expect = 4.261e-33 Identity = 60/100 (60.00%), Postives = 79/100 (79.00%), Query Frame = 3 Query: 312 DASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNK 611 + +S EEVRT+FVSGLPMDAK RELYLLFR+++G++ + LK KNGK +PVGFVTF TR AE+A + L+G++FDPD Q +RLEFA++NTK+ K K Sbjct: 433 NTASNEEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSKPK 532
BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: cpo (gene:FBgn0263995 transcript:FBtr0330276) HSP 1 Score: 131.339 bits (329), Expect = 4.261e-33 Identity = 60/100 (60.00%), Postives = 79/100 (79.00%), Query Frame = 3 Query: 312 DASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNK 611 + +S EEVRT+FVSGLPMDAK RELYLLFR+++G++ + LK KNGK +PVGFVTF TR AE+A + L+G++FDPD Q +RLEFA++NTK+ K K Sbjct: 433 NTASNEEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSKPK 532
BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: cpo (gene:FBgn0263995 transcript:FBtr0330269) HSP 1 Score: 131.339 bits (329), Expect = 4.261e-33 Identity = 60/100 (60.00%), Postives = 79/100 (79.00%), Query Frame = 3 Query: 312 DASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNK 611 + +S EEVRT+FVSGLPMDAK RELYLLFR+++G++ + LK KNGK +PVGFVTF TR AE+A + L+G++FDPD Q +RLEFA++NTK+ K K Sbjct: 433 NTASNEEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSKPK 532
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: rbpms2a (RNA binding protein, mRNA processing factor 2a [Source:ZFIN;Acc:ZDB-GENE-040718-106]) HSP 1 Score: 114.775 bits (286), Expect = 8.978e-30 Identity = 57/98 (58.16%), Postives = 73/98 (74.49%), Query Frame = 3 Query: 321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614 S EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFVTF++R+ AE+A L GI+FDP+S Q +RLEFA+ NTKM K+K+ Sbjct: 14 SLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNGIRFDPESPQTLRLEFAKANTKMAKSKL 106
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: rbpms2a (RNA binding protein, mRNA processing factor 2a [Source:ZFIN;Acc:ZDB-GENE-040718-106]) HSP 1 Score: 114.775 bits (286), Expect = 8.978e-30 Identity = 57/98 (58.16%), Postives = 73/98 (74.49%), Query Frame = 3 Query: 321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614 S EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFVTF++R+ AE+A L GI+FDP+S Q +RLEFA+ NTKM K+K+ Sbjct: 14 SLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNGIRFDPESPQTLRLEFAKANTKMAKSKL 106
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: rbpms2b (RNA binding protein, mRNA processing factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-741]) HSP 1 Score: 112.464 bits (280), Expect = 5.104e-29 Identity = 55/101 (54.46%), Postives = 73/101 (72.28%), Query Frame = 3 Query: 321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 S EEVRT+FVSGLP D K RELYLLFR FKG++ + +K K PVGFVTF++R+ AE+A L G++FDP++ Q +RLEFA+ NTKM K+K+ + Sbjct: 14 SLEEEVRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNGVRFDPENPQTLRLEFAKANTKMAKSKLMGT 109
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: rbpms2b (RNA binding protein, mRNA processing factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-741]) HSP 1 Score: 112.464 bits (280), Expect = 5.104e-29 Identity = 55/101 (54.46%), Postives = 73/101 (72.28%), Query Frame = 3 Query: 321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 S EEVRT+FVSGLP D K RELYLLFR FKG++ + +K K PVGFVTF++R+ AE+A L G++FDP++ Q +RLEFA+ NTKM K+K+ + Sbjct: 14 SLEEEVRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNGVRFDPENPQTLRLEFAKANTKMAKSKLMGT 109
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: rbpms2b (RNA binding protein, mRNA processing factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-741]) HSP 1 Score: 112.079 bits (279), Expect = 1.124e-28 Identity = 55/101 (54.46%), Postives = 73/101 (72.28%), Query Frame = 3 Query: 321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 S EEVRT+FVSGLP D K RELYLLFR FKG++ + +K K PVGFVTF++R+ AE+A L G++FDP++ Q +RLEFA+ NTKM K+K+ + Sbjct: 14 SLEEEVRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNGVRFDPENPQTLRLEFAKANTKMAKSKLMGT 109
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: rbpms (RNA binding protein with multiple splicing [Source:NCBI gene;Acc:100038229]) HSP 1 Score: 114.39 bits (285), Expect = 1.495e-29 Identity = 58/117 (49.57%), Postives = 80/117 (68.38%), Query Frame = 3 Query: 273 SNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 SN + G+ + S EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFV+F++R++AE+A L GI+FDP+ Q +RLEFA+ NTKM K+K+ + Sbjct: 3 SNIAEKEGSQ--DEISLPEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKSKLVGT 112
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: rbpms (RNA binding protein with multiple splicing [Source:NCBI gene;Acc:100038229]) HSP 1 Score: 114.39 bits (285), Expect = 1.636e-29 Identity = 58/117 (49.57%), Postives = 80/117 (68.38%), Query Frame = 3 Query: 273 SNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 SN + G+ + S EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFV+F++R++AE+A L GI+FDP+ Q +RLEFA+ NTKM K+K+ + Sbjct: 3 SNIAEKEGSQ--DEISLPEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKSKLVGT 112
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: rbpms (RNA binding protein with multiple splicing [Source:NCBI gene;Acc:100038229]) HSP 1 Score: 114.775 bits (286), Expect = 3.689e-29 Identity = 58/117 (49.57%), Postives = 80/117 (68.38%), Query Frame = 3 Query: 273 SNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 SN + G+ + S EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFV+F++R++AE+A L GI+FDP+ Q +RLEFA+ NTKM K+K+ + Sbjct: 3 SNIAEKEGSQ--DEISLPEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKSKLVGT 112
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: RBPMS2 (RNA binding protein with multiple splicing 2 [Source:NCBI gene;Acc:100038109]) HSP 1 Score: 109.383 bits (272), Expect = 1.161e-27 Identity = 55/99 (55.56%), Postives = 71/99 (71.72%), Query Frame = 3 Query: 318 SSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614 S++ VRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFVTF+ R AE+A L GI+FDP++ Q +RLEFA+ NTKM KNK+ Sbjct: 11 SASGPNVRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDNRAGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKNKL 104
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: RBPMS2 (RNA binding protein with multiple splicing 2 [Source:NCBI gene;Acc:100038109]) HSP 1 Score: 108.612 bits (270), Expect = 2.950e-27 Identity = 54/93 (58.06%), Postives = 68/93 (73.12%), Query Frame = 3 Query: 336 VRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614 VRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFVTF+ R AE+A L GI+FDP++ Q +RLEFA+ NTKM KNK+ Sbjct: 19 VRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDNRAGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKNKL 106
BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Rbpms (RNA binding protein gene with multiple splicing [Source:MGI Symbol;Acc:MGI:1334446]) HSP 1 Score: 116.316 bits (290), Expect = 2.272e-30 Identity = 57/105 (54.29%), Postives = 77/105 (73.33%), Query Frame = 3 Query: 309 SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 S+A+ EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFV+F++R++AE+A L GI+FDP+ Q +RLEFA+ NTKM KNK+ + Sbjct: 14 SEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113
BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Rbpms (RNA binding protein gene with multiple splicing [Source:MGI Symbol;Acc:MGI:1334446]) HSP 1 Score: 116.316 bits (290), Expect = 3.016e-30 Identity = 57/105 (54.29%), Postives = 77/105 (73.33%), Query Frame = 3 Query: 309 SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 S+A+ EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFV+F++R++AE+A L GI+FDP+ Q +RLEFA+ NTKM KNK+ + Sbjct: 14 SEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113
BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Rbpms (RNA binding protein gene with multiple splicing [Source:MGI Symbol;Acc:MGI:1334446]) HSP 1 Score: 116.316 bits (290), Expect = 3.016e-30 Identity = 57/105 (54.29%), Postives = 77/105 (73.33%), Query Frame = 3 Query: 309 SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 S+A+ EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFV+F++R++AE+A L GI+FDP+ Q +RLEFA+ NTKM KNK+ + Sbjct: 14 SEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113
BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Rbpms (RNA binding protein gene with multiple splicing [Source:MGI Symbol;Acc:MGI:1334446]) HSP 1 Score: 116.316 bits (290), Expect = 3.016e-30 Identity = 57/105 (54.29%), Postives = 77/105 (73.33%), Query Frame = 3 Query: 309 SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 S+A+ EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFV+F++R++AE+A L GI+FDP+ Q +RLEFA+ NTKM KNK+ + Sbjct: 14 SEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113
BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Rbpms (RNA binding protein gene with multiple splicing [Source:MGI Symbol;Acc:MGI:1334446]) HSP 1 Score: 115.546 bits (288), Expect = 8.663e-30 Identity = 57/105 (54.29%), Postives = 77/105 (73.33%), Query Frame = 3 Query: 309 SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 S+A+ EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFV+F++R++AE+A L GI+FDP+ Q +RLEFA+ NTKM KNK+ + Sbjct: 14 SEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q01617|CPO_DROME (Protein couch potato OS=Drosophila melanogaster OX=7227 GN=cpo PE=2 SV=4) HSP 1 Score: 131.339 bits (329), Expect = 4.271e-32 Identity = 60/100 (60.00%), Postives = 79/100 (79.00%), Query Frame = 3 Query: 312 DASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNK 611 + +S EEVRT+FVSGLPMDAK RELYLLFR+++G++ + LK KNGK +PVGFVTF TR AE+A + L+G++FDPD Q +RLEFA++NTK+ K K Sbjct: 433 NTASNEEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSKPK 532
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q93062|RBPMS_HUMAN (RNA-binding protein with multiple splicing OS=Homo sapiens OX=9606 GN=RBPMS PE=1 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 4.404e-30 Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 3 Query: 288 NNGNHGD-----SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 NNG + S+A+ EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFV+F++R++AE+A L GI+FDP+ Q +RLEFA+ NTKM KNK+ + Sbjct: 2 NNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9WVB0|RBPMS_MOUSE (RNA-binding protein with multiple splicing OS=Mus musculus OX=10090 GN=Rbpms PE=1 SV=2) HSP 1 Score: 116.316 bits (290), Expect = 2.110e-29 Identity = 57/105 (54.29%), Postives = 77/105 (73.33%), Query Frame = 3 Query: 309 SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 S+A+ EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFV+F++R++AE+A L GI+FDP+ Q +RLEFA+ NTKM KNK+ + Sbjct: 14 SEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q6DH13|RBP2A_DANRE (RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a PE=1 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 6.778e-29 Identity = 57/98 (58.16%), Postives = 73/98 (74.49%), Query Frame = 3 Query: 321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614 S EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFVTF++R+ AE+A L GI+FDP+S Q +RLEFA+ NTKM K+K+ Sbjct: 14 SLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNGIRFDPESPQTLRLEFAKANTKMAKSKL 106
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9W6I1|RBPS2_CHICK (RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 1.540e-27 Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 3 Query: 327 NEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614 EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFVTF++R AE+A L GI+FDP++ Q +RLEFA+ NTKM K+K+ Sbjct: 18 EEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRAGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKL 108
BLAST of RRM domain-containing protein vs. TrEMBL
Match: G7YDR0 (Protein couch potato (Fragment) OS=Clonorchis sinensis OX=79923 GN=CLF_105578 PE=4 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 3.192e-41 Identity = 78/132 (59.09%), Postives = 100/132 (75.76%), Query Frame = 3 Query: 246 ISDGCNVLCSNSTDN------NGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 +S+ ++ S S D+ NG D++ +VRTIFVSGLP+DAK RELYLLFR FKG+Q++TLKP GKNGKPTAPVGFVTF++R QAE A+ KL+G+KFDP+ +QLMRLEFARTNTK+ K K ++ Sbjct: 50 LSENSMMVLSQSVDSLHTLATNGGVDDTE-----HQVRTIFVSGLPLDAKPRELYLLFRGFKGYQSSTLKPAGKNGKPTAPVGFVTFDSREQAEDAMRKLQGVKFDPEGNQLMRLEFARTNTKVTKPKFISA 176
BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A4S2LLM9 (RRM domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_007910 PE=4 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.588e-40 Identity = 77/132 (58.33%), Postives = 100/132 (75.76%), Query Frame = 3 Query: 246 ISDGCNVLCSNSTDN------NGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 +S+ ++ S S D+ NG D++ +VRT+FVSGLP+DAK RELYLLFR FKG+Q++TLKP GKNGKPTAPVGFVTF++R QAE A+ KL+G+KFDP+ +QLMRLEFARTNTK+ K K ++ Sbjct: 50 LSENSMMVLSQSVDSLHTLATNGGVDDTE-----HQVRTVFVSGLPLDAKPRELYLLFRGFKGYQSSTLKPAGKNGKPTAPVGFVTFDSREQAEDAMRKLQGVKFDPEGNQLMRLEFARTNTKVTKPKFISA 176
BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A419PL37 (Protein couch potato (Fragment) OS=Clonorchis sinensis OX=79923 GN=cpo PE=4 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 7.359e-40 Identity = 71/98 (72.45%), Postives = 86/98 (87.76%), Query Frame = 3 Query: 330 EEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 +VRTIFVSGLP+DAK RELYLLFR FKG+Q++TLKP GKNGKPTAPVGFVTF++R QAE A+ KL+G+KFDP+ +QLMRLEFARTNTK+ K K ++ Sbjct: 1 HQVRTIFVSGLPLDAKPRELYLLFRGFKGYQSSTLKPAGKNGKPTAPVGFVTFDSREQAEDAMRKLQGVKFDPEGNQLMRLEFARTNTKVTKPKFISA 98
BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A4Z2DUC2 (Protein couch potato OS=Schistosoma japonicum OX=6182 GN=EWB00_005100 PE=4 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 3.227e-39 Identity = 74/117 (63.25%), Postives = 92/117 (78.63%), Query Frame = 3 Query: 264 VLCSNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614 ++ S S D+ G ++ +VRT+FVSGLP+DAK RELYLLFRSFKG+ ++TLKP GKNGK TAPVGFVTFE+R QAE A+ KL+G+KFDPD +Q MRLEFAR+NTK+ K KI Sbjct: 69 MILSQSIDSIHTVGTNNGEGTEHQVRTLFVSGLPLDAKPRELYLLFRSFKGYLSSTLKPAGKNGKLTAPVGFVTFESREQAEEAMTKLQGVKFDPDGNQHMRLEFARSNTKVTKPKI 185
BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A5J4P0Y0 (RRM domain-containing protein OS=Paragonimus westermani OX=34504 GN=DEA37_0006615 PE=4 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 3.371e-39 Identity = 76/117 (64.96%), Postives = 92/117 (78.63%), Query Frame = 3 Query: 315 ASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNSHIYNSGLNQQLSAG 665 A + +VRT+FVSGLP+DAK RELYLLFRSFKG+Q++TLKP GKNGK TAPVGFVTFE+R QAE A+ KL+G+KFDP+ +Q MRLEFARTNTK+ K K S G NQ ++A Sbjct: 136 ADESEHQVRTVFVSGLPLDAKPRELYLLFRSFKGYQSSTLKPAGKNGKLTAPVGFVTFESREQAEEAMTKLQGVKFDPEGNQHMRLEFARTNTKVTKPKFNTSPGGFCGSNQTMNAA 252
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: rbpms (RNA binding protein, mRNA processing factor [Source:NCBI gene;Acc:103026653]) HSP 1 Score: 117.857 bits (294), Expect = 5.431e-31 Identity = 57/105 (54.29%), Postives = 78/105 (74.29%), Query Frame = 3 Query: 309 SDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 S+ SSA EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFV+F++R++AE+A L G++FDP+ Q +RLEFA+ NTKM K+K+ + Sbjct: 12 SEYSSAEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGVRFDPEIPQTLRLEFAKANTKMAKSKLVGT 111
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: rbpms2a (RNA-binding protein with multiple splicing 2 [Source:NCBI gene;Acc:103041081]) HSP 1 Score: 112.849 bits (281), Expect = 4.686e-29 Identity = 56/98 (57.14%), Postives = 73/98 (74.49%), Query Frame = 3 Query: 321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614 S EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFVTF++R+ AE+A L GI+FDP++ Q +RLEFA+ NTKM K+K+ Sbjct: 14 SLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKL 106
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: rbpms2a (RNA-binding protein with multiple splicing 2 [Source:NCBI gene;Acc:103041081]) HSP 1 Score: 112.849 bits (281), Expect = 4.686e-29 Identity = 56/98 (57.14%), Postives = 73/98 (74.49%), Query Frame = 3 Query: 321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614 S EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFVTF++R+ AE+A L GI+FDP++ Q +RLEFA+ NTKM K+K+ Sbjct: 14 SLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKL 106
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: rbpms2b (RNA-binding protein with multiple splicing 2-like [Source:NCBI gene;Acc:103022941]) HSP 1 Score: 111.694 bits (278), Expect = 9.093e-29 Identity = 55/101 (54.46%), Postives = 73/101 (72.28%), Query Frame = 3 Query: 321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 S +EEVRT+FVSGLP D K RELYLLFR FKG++ + +K K PVGFVTF+ R+ AE+A L G++FDP++ Q +RLEFA+ NTKM K+K+ + Sbjct: 15 SLDEEVRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDCRSGAEAAKNALNGVRFDPENPQTLRLEFAKANTKMAKSKLMGT 110
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: rbpms2b (RNA-binding protein with multiple splicing 2-like [Source:NCBI gene;Acc:103022941]) HSP 1 Score: 111.694 bits (278), Expect = 1.182e-28 Identity = 55/98 (56.12%), Postives = 72/98 (73.47%), Query Frame = 3 Query: 321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614 S +EEVRT+FVSGLP D K RELYLLFR FKG++ + +K K PVGFVTF+ R+ AE+A L G++FDP++ Q +RLEFA+ NTKM K+K+ Sbjct: 15 SLDEEVRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDCRSGAEAAKNALNGVRFDPENPQTLRLEFAKANTKMAKSKL 107
BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000003641.1 (pep scaffold:Pmarinus_7.0:GL480715:5373:16108:1 gene:ENSPMAG00000003321.1 transcript:ENSPMAT00000003641.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 106.301 bits (264), Expect = 1.498e-27 Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 3 Query: 333 EVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614 +VRT+FVSGLP+D K RELYLLFR FKG++ + + K PVGFVTF +R QAE A L G++FDP+S Q +RLEFAR NTK +N++ Sbjct: 1 QVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLILVTSKQ-----PVGFVTFYSRAQAEDAKVSLNGVRFDPESPQTLRLEFARANTKTSRNRL 89
BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: rbpms2a (RNA binding protein, mRNA processing factor 2a [Source:ZFIN;Acc:ZDB-GENE-040718-106]) HSP 1 Score: 67.3958 bits (163), Expect = 6.407e-14 Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 3 Query: 468 PVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 PVGF F++R++AE+A L GI+FDPD Q +RLEFA+ NTKM KNK+ + Sbjct: 2 PVGFAMFDSRSEAEAAKNALNGIRFDPDIPQTLRLEFAKANTKMAKNKLLGT 53
BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Match: EDO49830 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7REQ1]) HSP 1 Score: 100.908 bits (250), Expect = 2.458e-26 Identity = 50/90 (55.56%), Postives = 66/90 (73.33%), Query Frame = 3 Query: 336 VRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLK 605 VRT+FVSGLP+D K RE+YLLFRSFKG++ + LK K PV FVTFE ++ A A +L+G++FDPD Q +RLEFA++NTK+ K Sbjct: 1 VRTLFVSGLPLDVKPREVYLLFRSFKGYEGSLLKLTDKQ-----PVAFVTFENKDCASDAKSELQGVQFDPDVSQTLRLEFAKSNTKVSK 85
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000005176.2 (RNA binding protein, mRNA processing factor [Source:NCBI gene;Acc:101164593]) HSP 1 Score: 113.62 bits (283), Expect = 1.999e-29 Identity = 55/116 (47.41%), Postives = 80/116 (68.97%), Query Frame = 3 Query: 276 NSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 N+ + ++ ++ EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFV+F++R++AE+A L G++FDP+ Q +RLEFA+ NTKM KNK+ + Sbjct: 2 NNNKTEKENETTEFTNHEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGVRFDPEIPQTLRLEFAKANTKMAKNKLVGT 112
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: rbpms2a (RNA-binding protein with multiple splicing 2 [Source:NCBI gene;Acc:101164709]) HSP 1 Score: 114.39 bits (285), Expect = 5.648e-29 Identity = 57/98 (58.16%), Postives = 73/98 (74.49%), Query Frame = 3 Query: 321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614 S EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFVTF++R+ AE+A L GI+FDP+S Q +RLEFA+ NTKM K+K+ Sbjct: 79 SIEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNGIRFDPESPQTLRLEFAKANTKMAKSKL 171
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: rbpms2a (RNA-binding protein with multiple splicing 2 [Source:NCBI gene;Acc:101164709]) HSP 1 Score: 114.39 bits (285), Expect = 5.648e-29 Identity = 57/98 (58.16%), Postives = 73/98 (74.49%), Query Frame = 3 Query: 321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKI 614 S EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFVTF++R+ AE+A L GI+FDP+S Q +RLEFA+ NTKM K+K+ Sbjct: 79 SIEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNGIRFDPESPQTLRLEFAKANTKMAKSKL 171
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000005173.2 (RNA binding protein, mRNA processing factor [Source:NCBI gene;Acc:101164593]) HSP 1 Score: 110.153 bits (274), Expect = 4.570e-28 Identity = 57/120 (47.50%), Postives = 78/120 (65.00%), Query Frame = 3 Query: 273 SNSTDNNGNHGDSDASSANEE---VRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNS 623 N T NH + + E VRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFV+F++R++AE+A L G++FDP+ Q +RLEFA+ NTKM KNK+ + Sbjct: 9 ENETTEFTNHEEENPPLHPREGRKVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGVRFDPEIPQTLRLEFAKANTKMAKNKLVGT 123
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: rbpms2a (RNA-binding protein with multiple splicing 2 [Source:NCBI gene;Acc:101164709]) HSP 1 Score: 77.0258 bits (188), Expect = 1.451e-16 Identity = 40/71 (56.34%), Postives = 50/71 (70.42%), Query Frame = 3 Query: 321 SANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEG 533 S EEVRT+FVSGLP+D K RELYLLFR FKG++ + +K K PVGFVTF++R+ AE+A L G Sbjct: 79 SIEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALNG 144
BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000071928.1 (SMESG000071928.1) HSP 1 Score: 569.696 bits (1467), Expect = 0.000e+0 Identity = 282/299 (94.31%), Postives = 284/299 (94.98%), Query Frame = 3 Query: 204 MTDFFLDSKSKVFPISDGCNVLCSNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNSHIYNSGLNQQLSAGSIDANLLNSDMNLFLGYDGRLAFFAQSAFSPFGPALLPFNGTTFRPPNCSFAPIAVAAPNGLINGNNIKIPNSSLTPGSVTGTHSLSPFIGPQSGLLGETISQVLMHPSQNGLLYVQPFSIDLNEISAQPLETQFRMNSWNSNGE 1100 MTDFFLDSKSKVFPISDGCNVLCSNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNK+CNSHIYNSGLNQQLSAGSIDANLLNSDMNLFLGYDGRLAFFAQSAFSPFGPALLPFNGTTFRPPNCSFAPIAVAAPNGL+N VTGTHSLSPFIGPQSGLLGETISQVLMHPSQNGLLYVQPFSIDLNEISAQPLETQFRMNSWNSNGE Sbjct: 1 MTDFFLDSKSKVFPISDGCNVLCSNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKMCNSHIYNSGLNQQLSAGSIDANLLNSDMNLFLGYDGRLAFFAQSAFSPFGPALLPFNGTTFRPPNCSFAPIAVAAPNGLLN---------------VTGTHSLSPFIGPQSGLLGETISQVLMHPSQNGLLYVQPFSIDLNEISAQPLETQFRMNSWNSNGE 284
BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000064331.1 (SMESG000064331.1) HSP 1 Score: 153.295 bits (386), Expect = 3.921e-43 Identity = 107/274 (39.05%), Postives = 149/274 (54.38%), Query Frame = 3 Query: 246 ISDGCNVLCSNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNSHIYNSGLNQQLSAGSIDANLLNSDMNLFLGYDGRLAFFAQSAFSPFGPALLPFNGTTFRP---PNCSFAPIAVAAPNGLINGNNIK---IPNSSLTPGSVTGTHSLS-PFIG-PQSGLLGETISQVLMHP---SQNGLLYVQPFSIDL 1034 +SD + S+S D+ G + N++VRT+F+SGLPMD K RELYLLFR +KG+ ++TLKP GKNGK TAPVGFVTF +R +AE A+ +L+G+KFDPDS Q MRLEFAR+NTK+ + KI + N L +I + F G+D F A ++++ G T P PN + + P +NG + +P+ L +T SL+ P++G P S + G TIS + P S GLL DL Sbjct: 45 LSDENMMNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQGVKFDPDSAQQMRLEFARSNTKVTRPKIGLFSLSQPFFNAALPPHAI--------IQQFPGFDHGSLFSADTSWANLGYDNAILTATGILPSATPNLHPSLLQALMPQNGLNGGVVSTNCLPSQILNQNIITSQSSLTNPYLGSPASSINGATISYPGLVPLGFSTVGLLSYNALMKDL 310
BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000064331.1 (SMESG000064331.1) HSP 1 Score: 153.295 bits (386), Expect = 7.194e-43 Identity = 107/274 (39.05%), Postives = 149/274 (54.38%), Query Frame = 3 Query: 246 ISDGCNVLCSNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLEGIKFDPDSDQLMRLEFARTNTKMLKNKICNSHIYNSGLNQQLSAGSIDANLLNSDMNLFLGYDGRLAFFAQSAFSPFGPALLPFNGTTFRP---PNCSFAPIAVAAPNGLINGNNIK---IPNSSLTPGSVTGTHSLS-PFIG-PQSGLLGETISQVLMHP---SQNGLLYVQPFSIDL 1034 +SD + S+S D+ G + N++VRT+F+SGLPMD K RELYLLFR +KG+ ++TLKP GKNGK TAPVGFVTF +R +AE A+ +L+G+KFDPDS Q MRLEFAR+NTK+ + KI + N L +I + F G+D F A ++++ G T P PN + + P +NG + +P+ L +T SL+ P++G P S + G TIS + P S GLL DL Sbjct: 70 LSDENMMNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQGVKFDPDSAQQMRLEFARSNTKVTRPKIGLFSLSQPFFNAALPPHAI--------IQQFPGFDHGSLFSADTSWANLGYDNAILTATGILPSATPNLHPSLLQALMPQNGLNGGVVSTNCLPSQILNQNIITSQSSLTNPYLGSPASSINGATISYPGLVPLGFSTVGLLSYNALMKDL 335
BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000064331.1 (SMESG000064331.1) HSP 1 Score: 104.375 bits (259), Expect = 1.120e-26 Identity = 51/95 (53.68%), Postives = 69/95 (72.63%), Query Frame = 3 Query: 246 ISDGCNVLCSNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLE 530 +SD + S+S D+ G + N++VRT+F+SGLPMD K RELYLLFR +KG+ ++TLKP GKNGK TAPVGFVTF +R +AE A+ +L+ Sbjct: 45 LSDENMMNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQ 139 The following BLAST results are available for this feature:
BLAST of RRM domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of RRM domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 3
BLAST of RRM domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of RRM domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of RRM domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of RRM domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of RRM domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 4
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30028255 ID=SMED30028255|Name=RRM domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1200bpback to top protein sequence of SMED30028255-orf-1 >SMED30028255-orf-1 ID=SMED30028255-orf-1|Name=SMED30028255-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=300bp MTDFFLDSKSKVFPISDGCNVLCSNSTDNNGNHGDSDASSANEEVRTIFVback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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