Centrosomal protein 164

Overview
NameCentrosomal protein 164
Smed IDSMED30028228
Length (bp)2460
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Centrosomal protein 164 (SMED30028228) t-SNE clustered cells

Violin plots show distribution of expression levels for Centrosomal protein 164 (SMED30028228) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Centrosomal protein 164 (SMED30028228) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Centrosomal protein 164 (SMED30028228) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30028228

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 9

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30028228SMESG000054195.1 SMESG000021687.1 SmedASXL_015931SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
pharynxSMED30028228SMESG000054195.1 SMESG000021687.1 dd_Smed_v4_12228_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30028228SMESG000054195.1 SMESG000021687.1 dd_Smed_v4_12228_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30028228SMESG000054195.1 SMESG000021687.1 dd_Smed_v4_12228_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30028228SMESG000054195.1 SMESG000021687.1 dd_Smed_v4_12228_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
Smed sexual biotypeSMED30028228SMESG000054195.1 SMESG000021688.1 SMESG000021687.1 SMESG000070311.1 Contig48807newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30028228SMESG000054195.1 SMESG000021688.1 SMESG000021687.1 SMESG000070311.1 Contig48807uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
head regionSMED30028228SMESG000054195.1 SMESG000021687.1 dd_Smed_v6_12228_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
epidermisSMED30028228SMESG000054195.1 SMESG000021687.1 dd_Smed_v4_12228_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Centrosomal protein 164 vs. Ensembl Human
Match: CEP164 (centrosomal protein 164 [Source:HGNC Symbol;Acc:HGNC:29182])

HSP 1 Score: 137.117 bits (344), Expect = 2.227e-37
Identity = 61/98 (62.24%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:   64 VNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREKLSN 357
            +  Q++LEE  ++ Y P+EQEI ++A  IGIDP KE ELM +AR GI APLP  WKPCQD+  DIYYFNFA G+SMWDHPCDE+YR +V+ ER KLS 
Sbjct:    8 IGDQLVLEEDYDETYIPSEQEILEFAREIGIDPIKEPELMWLAREGIVAPLPGEWKPCQDITGDIYYFNFANGQSMWDHPCDEHYRSLVIQERAKLST 105
[Close]
BLAST of Centrosomal protein 164 vs. Ensembl Human
Match: CEP164 (centrosomal protein 164 [Source:HGNC Symbol;Acc:HGNC:29182])

HSP 1 Score: 137.117 bits (344), Expect = 2.679e-37
Identity = 61/98 (62.24%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:   64 VNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREKLSN 357
            +  Q++LEE  ++ Y P+EQEI ++A  IGIDP KE ELM +AR GI APLP  WKPCQD+  DIYYFNFA G+SMWDHPCDE+YR +V+ ER KLS 
Sbjct:    8 IGDQLVLEEDYDETYIPSEQEILEFAREIGIDPIKEPELMWLAREGIVAPLPGEWKPCQDITGDIYYFNFANGQSMWDHPCDEHYRSLVIQERAKLST 105
[Close]
BLAST of Centrosomal protein 164 vs. Ensembl Human
Match: CEP164 (centrosomal protein 164 [Source:HGNC Symbol;Acc:HGNC:29182])

HSP 1 Score: 137.117 bits (344), Expect = 2.679e-37
Identity = 61/98 (62.24%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:   64 VNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREKLSN 357
            +  Q++LEE  ++ Y P+EQEI ++A  IGIDP KE ELM +AR GI APLP  WKPCQD+  DIYYFNFA G+SMWDHPCDE+YR +V+ ER KLS 
Sbjct:    8 IGDQLVLEEDYDETYIPSEQEILEFAREIGIDPIKEPELMWLAREGIVAPLPGEWKPCQDITGDIYYFNFANGQSMWDHPCDEHYRSLVIQERAKLST 105
[Close]
BLAST of Centrosomal protein 164 vs. Ensembl Human
Match: CEP164 (centrosomal protein 164 [Source:HGNC Symbol;Acc:HGNC:29182])

HSP 1 Score: 131.339 bits (329), Expect = 1.876e-30
Identity = 61/97 (62.89%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:   64 VNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREKLS 354
            +  Q++LEE  ++ Y P+EQEI ++A  IGIDP KE ELM +AR GI APLP  WKPCQD+  DIYYFNFA G+SMWDHPCDE+YR +V+ ER KLS
Sbjct:    8 IGDQLVLEEDYDETYIPSEQEILEFAREIGIDPIKEPELMWLAREGIVAPLPGEWKPCQDITGDIYYFNFANGQSMWDHPCDEHYRSLVIQERAKLS 104
[Close]
BLAST of Centrosomal protein 164 vs. Ensembl Human
Match: CEP164 (centrosomal protein 164 [Source:HGNC Symbol;Acc:HGNC:29182])

HSP 1 Score: 103.99 bits (258), Expect = 3.547e-25
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:  181 MHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREKLSN 357
            M +AR GI APLP  WKPCQD+  DIYYFNFA G+SMWDHPCDE+YR +V+ ER KLS 
Sbjct:    1 MWLAREGIVAPLPGEWKPCQDITGDIYYFNFANGQSMWDHPCDEHYRSLVIQERAKLST 59
[Close]
BLAST of Centrosomal protein 164 vs. Ensembl Fly
Match: CG9170 (gene:FBgn0030716 transcript:FBtr0074154)

HSP 1 Score: 85.5001 bits (210), Expect = 1.280e-16
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:   76 IILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPC-QDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREK 348
            +I EE  ++   P+ +EI +YA LIGIDP KE  L+++A+ G+ A LP +WK C  +     YY N  T ES WDHP D  YR +V   R+K
Sbjct:   37 VICEEVFDEACFPSSEEINEYASLIGIDPQKEPHLLYLAKEGLMAALPTDWKICYSEEKNGHYYHNTRTKESQWDHPLDAIYRDLVNQARQK 128
[Close]
BLAST of Centrosomal protein 164 vs. Ensembl Fly
Match: CG9170 (gene:FBgn0030716 transcript:FBtr0346191)

HSP 1 Score: 85.5001 bits (210), Expect = 1.280e-16
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:   76 IILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPC-QDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREK 348
            +I EE  ++   P+ +EI +YA LIGIDP KE  L+++A+ G+ A LP +WK C  +     YY N  T ES WDHP D  YR +V   R+K
Sbjct:   37 VICEEVFDEACFPSSEEINEYASLIGIDPQKEPHLLYLAKEGLMAALPTDWKICYSEEKNGHYYHNTRTKESQWDHPLDAIYRDLVNQARQK 128
[Close]
BLAST of Centrosomal protein 164 vs. Ensembl Fly
Match: CG9170 (gene:FBgn0030716 transcript:FBtr0074153)

HSP 1 Score: 85.5001 bits (210), Expect = 1.280e-16
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:   76 IILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPC-QDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREK 348
            +I EE  ++   P+ +EI +YA LIGIDP KE  L+++A+ G+ A LP +WK C  +     YY N  T ES WDHP D  YR +V   R+K
Sbjct:   37 VICEEVFDEACFPSSEEINEYASLIGIDPQKEPHLLYLAKEGLMAALPTDWKICYSEEKNGHYYHNTRTKESQWDHPLDAIYRDLVNQARQK 128
[Close]
BLAST of Centrosomal protein 164 vs. Ensembl Xenopus
Match: btc (betacellulin [Source:Xenbase;Acc:XB-GENE-995923])

HSP 1 Score: 140.198 bits (352), Expect = 2.777e-33
Identity = 61/98 (62.24%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:   58 ICVNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREKL 351
            I +  Q+ILEE  +++Y P E EI++YA +IGIDPD E ELM +AR GI APL   WKPCQDV  DIYYFNFATG+S W+HP DE+YR++V+ EREKL
Sbjct:    7 IRIGDQLILEEDYDENYIPQENEIQEYARVIGIDPDSEPELMWLAREGIVAPLAAAWKPCQDVTGDIYYFNFATGQSTWEHPNDEHYRELVIQEREKL 104
[Close]
BLAST of Centrosomal protein 164 vs. Ensembl Xenopus
Match: btc (betacellulin [Source:Xenbase;Acc:XB-GENE-995923])

HSP 1 Score: 139.813 bits (351), Expect = 3.428e-33
Identity = 61/98 (62.24%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:   58 ICVNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREKL 351
            I +  Q+ILEE  +++Y P E EI++YA +IGIDPD E ELM +AR GI APL   WKPCQDV  DIYYFNFATG+S W+HP DE+YR++V+ EREKL
Sbjct:    7 IRIGDQLILEEDYDENYIPQENEIQEYARVIGIDPDSEPELMWLAREGIVAPLAAAWKPCQDVTGDIYYFNFATGQSTWEHPNDEHYRELVIQEREKL 104
[Close]
BLAST of Centrosomal protein 164 vs. Ensembl Mouse
Match: Cep164 (centrosomal protein 164 [Source:MGI Symbol;Acc:MGI:2384878])

HSP 1 Score: 135.961 bits (341), Expect = 5.730e-32
Identity = 60/99 (60.61%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:   58 ICVNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREKLS 354
            I +  Q++LEE  ++ Y P+EQEI D+A +IGIDP KE ELM +AR GI+APLP  WKPCQ++  D+YYFNF TG+S+WDHPCDE+YRK+V+ ERE+ S
Sbjct:    6 ILLGDQLVLEEDSDETYVPSEQEILDFARVIGIDPIKEPELMWLAREGIEAPLPKGWKPCQNITGDLYYFNFDTGQSIWDHPCDEHYRKLVIQERERWS 104
[Close]
BLAST of Centrosomal protein 164 vs. Ensembl Mouse
Match: Cep164 (centrosomal protein 164 [Source:MGI Symbol;Acc:MGI:2384878])

HSP 1 Score: 133.265 bits (334), Expect = 2.815e-31
Identity = 60/99 (60.61%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:   58 ICVNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREKLS 354
            I +  Q++LEE  ++ Y P+EQEI D+A +IGIDP KE ELM +AR GI+APLP  WKPCQ++  D+YYFNF TG+S+WDHPCDE+YRK+V+ ERE+ S
Sbjct:    6 ILLGDQLVLEEDSDETYVPSEQEILDFARVIGIDPIKEPELMWLAREGIEAPLPKGWKPCQNITGDLYYFNFDTGQSIWDHPCDEHYRKLVIQERERWS 104
[Close]
BLAST of Centrosomal protein 164 vs. UniProt/SwissProt
Match: sp|Q5DU05|CE164_MOUSE (Centrosomal protein of 164 kDa OS=Mus musculus OX=10090 GN=Cep164 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 2.058e-30
Identity = 60/99 (60.61%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:   58 ICVNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREKLS 354
            I +  Q++LEE  ++ Y P+EQEI D+A +IGIDP KE ELM +AR GI+APLP  WKPCQ++  D+YYFNF TG+S+WDHPCDE+YRK+V+ ERE+ S
Sbjct:    6 ILLGDQLVLEEDSDETYVPSEQEILDFARVIGIDPIKEPELMWLAREGIEAPLPKGWKPCQNITGDLYYFNFDTGQSIWDHPCDEHYRKLVIQERERWS 104
[Close]
BLAST of Centrosomal protein 164 vs. UniProt/SwissProt
Match: sp|Q9UPV0|CE164_HUMAN (Centrosomal protein of 164 kDa OS=Homo sapiens OX=9606 GN=CEP164 PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 9.007e-30
Identity = 61/97 (62.89%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:   64 VNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREKLS 354
            +  Q++LEE  ++ Y P+EQEI ++A  IGIDP KE ELM +AR GI APLP  WKPCQD+  DIYYFNFA G+SMWDHPCDE+YR +V+ ER KLS
Sbjct:    8 IGDQLVLEEDYDETYIPSEQEILEFAREIGIDPIKEPELMWLAREGIVAPLPGEWKPCQDITGDIYYFNFANGQSMWDHPCDEHYRSLVIQERAKLS 104
[Close]
BLAST of Centrosomal protein 164 vs. TrEMBL
Match: R7TD26 (WW domain-containing protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_100218 PE=4 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.202e-37
Identity = 64/97 (65.98%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:   64 VNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREKLS 354
            +NGQ+ILEE  +++Y+PTE+EI DYA +IGIDP KES+L+ +AR GI APLP +WKPCQD N DIYYFNF +GES+WDHPCDE+YR++V+ ER K S
Sbjct:    4 INGQVILEEDYDENYQPTEEEIYDYAKVIGIDPHKESDLLWIAREGINAPLPEHWKPCQDPNADIYYFNFMSGESIWDHPCDEFYRQMVVEERRKES 100
[Close]
BLAST of Centrosomal protein 164 vs. TrEMBL
Match: A7SRJ4 (Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g128876 PE=4 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.829e-37
Identity = 64/95 (67.37%), Postives = 78/95 (82.11%), Query Frame = 1 
Query:   64 VNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREK 348
            +NGQIILEE  ++ YEPTEQEI +YA LIGIDP +ES+L+ +AR GI APLP +WKPCQD + DIYYFNF TG+S+WDHPCD+YYR +V  ER K
Sbjct:    2 INGQIILEEEYDETYEPTEQEIYEYAQLIGIDPHRESDLLWIAREGIVAPLPPDWKPCQDASGDIYYFNFTTGDSVWDHPCDDYYRNMVQEERSK 96
[Close]
BLAST of Centrosomal protein 164 vs. TrEMBL
Match: V4A736 (WW domain-containing protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_105990 PE=4 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 9.286e-37
Identity = 65/114 (57.02%), Postives = 86/114 (75.44%), Query Frame = 1 
Query:   58 ICVNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREKLSNKTLERHLLKQDVNN 399
            + +N Q+ILEE  +++Y+PTE E+ +YA +IGID   ES L+++AR GI APLP NWKPCQD N+DIYYFNFATGES+WDHPCDE+YRK+V  ER        +RHLL ++  +
Sbjct:    1 MMINNQVILEEDYDENYQPTEDEVLEYASIIGIDVQTESHLLYIAREGINAPLPENWKPCQDPNQDIYYFNFATGESIWDHPCDEFYRKMVDEER--------KRHLLGKNTGS 106
[Close]
BLAST of Centrosomal protein 164 vs. TrEMBL
Match: A0A448X5I3 (WW domain-containing protein (Fragment) OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS21987 PE=4 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.171e-36
Identity = 60/98 (61.22%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:   61 CVNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREKLS 354
            C+NGQ ILEE+ + +Y P+  E+ DYA ++GIDP+ E++LMH+AR GI  PLP NWK CQD + DIYYFNFA G+S+WDHPCDEYYR+ V AER++L+
Sbjct:    4 CINGQTILEENYDPEYNPSLDELHDYASILGIDPNLEADLMHIAREGINTPLPKNWKACQDTSGDIYYFNFANGKSIWDHPCDEYYRERVFAERKRLA 101
[Close]
BLAST of Centrosomal protein 164 vs. TrEMBL
Match: A0A093BTZ4 (Centrosomal protein of 164 kDa (Fragment) OS=Tauraco erythrolophus OX=121530 GN=N340_02149 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.706e-36
Identity = 62/101 (61.39%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:   58 ICVNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREKLSNK 360
            +C+  Q+ILEE+ ++ Y P EQEI+ +A  IGIDP+KE ELM +AR GI APLP+ WKPCQD   DIYYFNFATG+S WDHPCD++YR +V+ EREKL  +
Sbjct:    6 VCIGDQLILEEAYDETYVPKEQEIQSFAREIGIDPEKEPELMWLAREGIVAPLPMEWKPCQDTTGDIYYFNFATGQSTWDHPCDDHYRALVVQEREKLLAR 106
[Close]
BLAST of Centrosomal protein 164 vs. Ensembl Cavefish
Match: ENSAMXT00000047751.1 (centrosomal protein 164 [Source:NCBI gene;Acc:103036499])

HSP 1 Score: 142.124 bits (357), Expect = 2.258e-34
Identity = 59/101 (58.42%), Postives = 77/101 (76.24%), Query Frame = 1 
Query:   58 ICVNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREKLSNK 360
            + +  Q+ILEE  +++Y P+EQEI +YA  IGIDPD+E EL+ +AR GI APLP  WKPCQDV  D+YYFNF+TG+S WDHPCDE YR +V  ERE+  ++
Sbjct:    6 LRIGDQLILEEDYDENYIPSEQEIHEYAREIGIDPDREPELLWLAREGIVAPLPPEWKPCQDVTGDVYYFNFSTGQSTWDHPCDEQYRHMVTQERERAQSR 106
[Close]
BLAST of Centrosomal protein 164 vs. Ensembl Cavefish
Match: ENSAMXT00000031482.1 (centrosomal protein 164 [Source:NCBI gene;Acc:103036499])

HSP 1 Score: 142.124 bits (357), Expect = 2.947e-34
Identity = 59/101 (58.42%), Postives = 77/101 (76.24%), Query Frame = 1 
Query:   58 ICVNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREKLSNK 360
            + +  Q+ILEE  +++Y P+EQEI +YA  IGIDPD+E EL+ +AR GI APLP  WKPCQDV  D+YYFNF+TG+S WDHPCDE YR +V  ERE+  ++
Sbjct:    6 LRIGDQLILEEDYDENYIPSEQEIHEYAREIGIDPDREPELLWLAREGIVAPLPPEWKPCQDVTGDVYYFNFSTGQSTWDHPCDEQYRHMVTQERERAQSR 106
[Close]
BLAST of Centrosomal protein 164 vs. Ensembl Nematostella
Match: EDO33670 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SRJ4])

HSP 1 Score: 145.591 bits (366), Expect = 3.913e-41
Identity = 64/95 (67.37%), Postives = 78/95 (82.11%), Query Frame = 1 
Query:   64 VNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREK 348
            +NGQIILEE  ++ YEPTEQEI +YA LIGIDP +ES+L+ +AR GI APLP +WKPCQD + DIYYFNF TG+S+WDHPCD+YYR +V  ER K
Sbjct:    2 INGQIILEEEYDETYEPTEQEIYEYAQLIGIDPHRESDLLWIAREGIVAPLPPDWKPCQDASGDIYYFNFTTGDSVWDHPCDDYYRNMVQEERSK 96
[Close]
BLAST of Centrosomal protein 164 vs. Ensembl Medaka
Match: ENSORLT00000019736.2 (centrosomal protein 164 [Source:NCBI gene;Acc:101170610])

HSP 1 Score: 128.642 bits (322), Expect = 6.246e-30
Identity = 57/93 (61.29%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:   64 VNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAER 342
            +  Q+ILEE  ++ + P+++EI++YA  IGIDPDKE EL+ +A+ GIKAPLP  WKPCQDV  DIYYFNF+TG+S WDHPCDE+YR++V+ ER
Sbjct:    5 IGDQLILEEEYDESFIPSDKEIQEYAREIGIDPDKEPELLWLAKEGIKAPLPPEWKPCQDVTGDIYYFNFSTGQSTWDHPCDEHYRQLVIQER 97
[Close]
BLAST of Centrosomal protein 164 vs. Ensembl Medaka
Match: ENSORLT00000033543.1 (centrosomal protein 164 [Source:NCBI gene;Acc:101170610])

HSP 1 Score: 127.102 bits (318), Expect = 2.079e-29
Identity = 57/93 (61.29%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:   64 VNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAER 342
            +  Q+ILEE  ++ + P+++EI++YA  IGIDPDKE EL+ +A+ GIKAPLP  WKPCQDV  DIYYFNF+TG+S WDHPCDE+YR++V+ ER
Sbjct:    5 IGDQLILEEEYDESFIPSDKEIQEYAREIGIDPDKEPELLWLAKEGIKAPLPPEWKPCQDVTGDIYYFNFSTGQSTWDHPCDEHYRQLVIQER 97
[Close]
BLAST of Centrosomal protein 164 vs. Ensembl Medaka
Match: ENSORLT00000031009.1 (centrosomal protein 164 [Source:NCBI gene;Acc:101170610])

HSP 1 Score: 127.102 bits (318), Expect = 2.387e-29
Identity = 57/93 (61.29%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:   64 VNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAER 342
            +  Q+ILEE  ++ + P+++EI++YA  IGIDPDKE EL+ +A+ GIKAPLP  WKPCQDV  DIYYFNF+TG+S WDHPCDE+YR++V+ ER
Sbjct:    5 IGDQLILEEEYDESFIPSDKEIQEYAREIGIDPDKEPELLWLAKEGIKAPLPPEWKPCQDVTGDIYYFNFSTGQSTWDHPCDEHYRQLVIQER 97
[Close]
BLAST of Centrosomal protein 164 vs. Planmine SMEST
Match: SMESG000021687.1 (SMESG000021687.1)

HSP 1 Score: 1592.79 bits (4123), Expect = 0.000e+0
Identity = 794/794 (100.00%), Postives = 794/794 (100.00%), Query Frame = 1 
Query:   49 MGDICVNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREKLSNKTLERHLLKQDVNNITTEQLTPISLKTAIKSLQTNFLPDFVNHDIFNKISSEDLKIVPQDKILDYYKDEENSGDLSYSESNNKQTSDSKSEDYGKFINFGLDKSLTDRLDNEPGNSMFFKDNIPNKINFRDSIDHIKVLEIEKKAELIDSKDNKKVAGDDLTNISLKESQLKAKINEKFDNLLIFENNTANSNEEKFNHDNMELCSIDQNDTTKLSKNSPFGNNNSIDANTKMEILSSDKISEFQTIHLKEINDLKSEFHNEKELITNKHQNEIKTIMANHTKEIEKLKNSHQSKIISLNQENEIIKSTLSKLKSEFSEHVSNKSETEYLKNAYDEKIKILTDENQLNKMKLAKLNSELSEKINIIDRYENNKNTEKQKIIEKSMFKANENDKELRTVEYSLEHRKLELEYLNTEIKNLLLIKENLVKEIEKKKRYIKNRNSIIDRKDSYVSPFVETRTVLSKEFCDSAVLLDEINCSDSEENDSLKSNFISKENKNLMIKARCFMNQLGPSGYISRPNLLYQKYKSKSLPSFVEFEKVKDETKEFSYPNNGFSDKTQSNDLILSLEKITLDLNQVMTELKRGNNEHIPKDIGCNINNGTKFSCDYLTSKSKENVVNIGYQNPGEEILKKKWEKYFGSNLGKNTKSSYSLLYDKGLGSHAFNSINLYDEKKLSTEHKLKQHKAWIDNFNIK 2430
            MGDICVNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREKLSNKTLERHLLKQDVNNITTEQLTPISLKTAIKSLQTNFLPDFVNHDIFNKISSEDLKIVPQDKILDYYKDEENSGDLSYSESNNKQTSDSKSEDYGKFINFGLDKSLTDRLDNEPGNSMFFKDNIPNKINFRDSIDHIKVLEIEKKAELIDSKDNKKVAGDDLTNISLKESQLKAKINEKFDNLLIFENNTANSNEEKFNHDNMELCSIDQNDTTKLSKNSPFGNNNSIDANTKMEILSSDKISEFQTIHLKEINDLKSEFHNEKELITNKHQNEIKTIMANHTKEIEKLKNSHQSKIISLNQENEIIKSTLSKLKSEFSEHVSNKSETEYLKNAYDEKIKILTDENQLNKMKLAKLNSELSEKINIIDRYENNKNTEKQKIIEKSMFKANENDKELRTVEYSLEHRKLELEYLNTEIKNLLLIKENLVKEIEKKKRYIKNRNSIIDRKDSYVSPFVETRTVLSKEFCDSAVLLDEINCSDSEENDSLKSNFISKENKNLMIKARCFMNQLGPSGYISRPNLLYQKYKSKSLPSFVEFEKVKDETKEFSYPNNGFSDKTQSNDLILSLEKITLDLNQVMTELKRGNNEHIPKDIGCNINNGTKFSCDYLTSKSKENVVNIGYQNPGEEILKKKWEKYFGSNLGKNTKSSYSLLYDKGLGSHAFNSINLYDEKKLSTEHKLKQHKAWIDNFNIK
Sbjct:    1 MGDICVNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARMGIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREKLSNKTLERHLLKQDVNNITTEQLTPISLKTAIKSLQTNFLPDFVNHDIFNKISSEDLKIVPQDKILDYYKDEENSGDLSYSESNNKQTSDSKSEDYGKFINFGLDKSLTDRLDNEPGNSMFFKDNIPNKINFRDSIDHIKVLEIEKKAELIDSKDNKKVAGDDLTNISLKESQLKAKINEKFDNLLIFENNTANSNEEKFNHDNMELCSIDQNDTTKLSKNSPFGNNNSIDANTKMEILSSDKISEFQTIHLKEINDLKSEFHNEKELITNKHQNEIKTIMANHTKEIEKLKNSHQSKIISLNQENEIIKSTLSKLKSEFSEHVSNKSETEYLKNAYDEKIKILTDENQLNKMKLAKLNSELSEKINIIDRYENNKNTEKQKIIEKSMFKANENDKELRTVEYSLEHRKLELEYLNTEIKNLLLIKENLVKEIEKKKRYIKNRNSIIDRKDSYVSPFVETRTVLSKEFCDSAVLLDEINCSDSEENDSLKSNFISKENKNLMIKARCFMNQLGPSGYISRPNLLYQKYKSKSLPSFVEFEKVKDETKEFSYPNNGFSDKTQSNDLILSLEKITLDLNQVMTELKRGNNEHIPKDIGCNINNGTKFSCDYLTSKSKENVVNIGYQNPGEEILKKKWEKYFGSNLGKNTKSSYSLLYDKGLGSHAFNSINLYDEKKLSTEHKLKQHKAWIDNFNIK 794
[Close]
BLAST of Centrosomal protein 164 vs. Planmine SMEST
Match: SMESG000054195.1 (SMESG000054195.1)

HSP 1 Score: 127.872 bits (320), Expect = 7.713e-35
Identity = 75/94 (79.79%), Postives = 77/94 (81.91%), Query Frame = 1 
Query: 1189 MANHTKEIEKLKNSHQSKIISLNQENEIIKSTLSKLKSEFSEHVSNKSETEYLKNAYDEKIKILTDENQLNKMKLAKLNSELSEKINIIDRYEN 1470
            MANHTKEIEKLKNSHQSKIISLNQENEIIKSTLSKLKSEFSEHVSNKSETEYLKNAY         ENQLNKMKLAKLN     KI + +R EN
Sbjct:    1 MANHTKEIEKLKNSHQSKIISLNQENEIIKSTLSKLKSEFSEHVSNKSETEYLKNAY---------ENQLNKMKLAKLN-----KIEVENRLEN 80
The following BLAST results are available for this feature:
BLAST of Centrosomal protein 164 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
CEP1642.227e-3762.24centrosomal protein 164 [Source:HGNC Symbol;Acc:HG... [more]
CEP1642.679e-3762.24centrosomal protein 164 [Source:HGNC Symbol;Acc:HG... [more]
CEP1642.679e-3762.24centrosomal protein 164 [Source:HGNC Symbol;Acc:HG... [more]
CEP1641.876e-3062.89centrosomal protein 164 [Source:HGNC Symbol;Acc:HG... [more]
CEP1643.547e-2569.49centrosomal protein 164 [Source:HGNC Symbol;Acc:HG... [more]
back to top
BLAST of Centrosomal protein 164 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Centrosomal protein 164 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
CG91701.280e-1644.57gene:FBgn0030716 transcript:FBtr0074154[more]
CG91701.280e-1644.57gene:FBgn0030716 transcript:FBtr0346191[more]
CG91701.280e-1644.57gene:FBgn0030716 transcript:FBtr0074153[more]
back to top
BLAST of Centrosomal protein 164 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Centrosomal protein 164 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
btc2.777e-3362.24betacellulin [Source:Xenbase;Acc:XB-GENE-995923][more]
btc3.428e-3362.24betacellulin [Source:Xenbase;Acc:XB-GENE-995923][more]
back to top
BLAST of Centrosomal protein 164 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Cep1645.730e-3260.61centrosomal protein 164 [Source:MGI Symbol;Acc:MGI... [more]
Cep1642.815e-3160.61centrosomal protein 164 [Source:MGI Symbol;Acc:MGI... [more]
back to top
BLAST of Centrosomal protein 164 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 2
Match NameE-valueIdentityDescription
sp|Q5DU05|CE164_MOUSE2.058e-3060.61Centrosomal protein of 164 kDa OS=Mus musculus OX=... [more]
sp|Q9UPV0|CE164_HUMAN9.007e-3062.89Centrosomal protein of 164 kDa OS=Homo sapiens OX=... [more]
back to top
BLAST of Centrosomal protein 164 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
R7TD261.202e-3765.98WW domain-containing protein OS=Capitella teleta O... [more]
A7SRJ42.829e-3767.37Predicted protein (Fragment) OS=Nematostella vecte... [more]
V4A7369.286e-3757.02WW domain-containing protein OS=Lottia gigantea OX... [more]
A0A448X5I31.171e-3661.22WW domain-containing protein (Fragment) OS=Protopo... [more]
A0A093BTZ41.706e-3661.39Centrosomal protein of 164 kDa (Fragment) OS=Taura... [more]
back to top
BLAST of Centrosomal protein 164 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ENSAMXT00000047751.12.258e-3458.42centrosomal protein 164 [Source:NCBI gene;Acc:1030... [more]
ENSAMXT00000031482.12.947e-3458.42centrosomal protein 164 [Source:NCBI gene;Acc:1030... [more]
back to top
BLAST of Centrosomal protein 164 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Centrosomal protein 164 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Centrosomal protein 164 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO336703.913e-4167.37Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of Centrosomal protein 164 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
ENSORLT00000019736.26.246e-3061.29centrosomal protein 164 [Source:NCBI gene;Acc:1011... [more]
ENSORLT00000033543.12.079e-2961.29centrosomal protein 164 [Source:NCBI gene;Acc:1011... [more]
ENSORLT00000031009.12.387e-2961.29centrosomal protein 164 [Source:NCBI gene;Acc:1011... [more]
back to top
BLAST of Centrosomal protein 164 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000021687.10.000e+0100.00SMESG000021687.1[more]
SMESG000054195.17.713e-3579.79SMESG000054195.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30028228 ID=SMED30028228|Name=Centrosomal protein 164|organism=Schmidtea mediterranea sexual|type=transcript|length=2460bp
TATATAAATCTTATATGTATTTGAGAATAAATAACTACTTACAATTTCAT
GGGCGATATTTGTGTGAATGGGCAGATTATATTGGAAGAATCTCGCAACG
ATGATTATGAACCAACTGAACAAGAGATACGAGATTATGCTTGTTTAATA
GGAATTGATCCTGATAAAGAAAGTGAACTAATGCACGTAGCTAGAATGGG
AATTAAAGCTCCATTACCTGTTAATTGGAAACCGTGTCAAGATGTTAATG
AGGATATTTATTATTTTAATTTTGCCACAGGTGAAAGTATGTGGGATCAT
CCATGTGATGAATATTATCGAAAAATAGTTTTAGCAGAAAGAGAAAAATT
ATCAAATAAGACTTTGGAAAGACATTTGTTAAAACAGGATGTAAATAACA
TTACAACAGAACAATTGACGCCTATTAGTCTGAAAACTGCAATCAAATCT
CTTCAAACAAACTTTTTGCCAGATTTCGTAAATCACGATATTTTTAACAA
AATTTCTTCTGAAGATTTAAAAATTGTACCACAAGATAAAATTTTAGACT
ATTACAAAGATGAAGAAAATTCAGGTGATCTATCTTATTCTGAATCTAAT
AATAAGCAGACTTCTGACAGTAAAAGTGAAGATTATGGGAAATTTATTAA
TTTTGGATTGGACAAAAGTTTAACAGATAGATTGGACAATGAACCTGGCA
ACTCAATGTTTTTTAAAGATAATATTCCAAATAAAATTAATTTTCGCGAT
AGCATTGATCACATAAAAGTTCTTGAAATCGAAAAGAAAGCTGAACTGAT
AGATTCTAAGGATAATAAGAAAGTCGCTGGAGATGATTTAACTAATATTT
CCTTAAAAGAAAGTCAATTAAAAGCTAAAATAAATGAAAAATTTGACAAT
TTATTGATTTTTGAAAATAATACCGCCAATTCTAATGAAGAAAAATTCAA
TCATGACAACATGGAATTATGCTCTATTGATCAAAATGATACAACTAAAT
TATCTAAAAACTCTCCGTTTGGTAATAATAACTCAATCGATGCTAACACT
AAAATGGAAATTTTATCGTCAGATAAAATATCTGAATTCCAGACAATTCA
CTTGAAAGAAATTAATGATTTAAAGAGTGAATTTCACAATGAAAAAGAAC
TGATAACAAACAAACATCAAAATGAAATTAAGACGATAATGGCTAACCAT
ACAAAAGAAATTGAAAAATTAAAAAATTCCCACCAATCAAAAATAATATC
ACTCAATCAAGAAAATGAAATTATCAAATCAACGCTATCTAAATTGAAAT
CGGAATTTTCTGAACACGTTAGCAATAAATCGGAAACGGAATATTTGAAA
AATGCATACGATGAAAAAATAAAAATTCTAACTGATGAAAACCAGCTGAA
TAAAATGAAGCTAGCCAAATTGAATTCTGAACTTTCAGAAAAAATAAATA
TAATAGATCGTTATGAAAATAACAAAAATACAGAAAAGCAAAAAATTATC
GAAAAATCCATGTTCAAAGCCAATGAAAATGATAAAGAGCTGAGAACTGT
TGAATATTCTCTTGAGCATAGGAAATTGGAATTAGAATATTTAAATACAG
AAATTAAAAATTTATTATTAATCAAAGAGAATTTAGTGAAAGAAATAGAG
AAAAAGAAACGATACATTAAAAATCGAAACAGTATTATCGATCGGAAAGA
CAGCTATGTCTCGCCATTTGTTGAAACGAGAACTGTTTTATCCAAAGAGT
TTTGTGATTCAGCAGTCTTATTGGATGAAATTAATTGTTCAGATTCTGAA
GAAAACGATTCGTTAAAAAGCAATTTTATTTCCAAAGAAAATAAAAATTT
AATGATTAAAGCTAGATGCTTTATGAATCAGTTGGGCCCTAGCGGTTATA
TTTCACGGCCTAATTTATTATATCAAAAATACAAGTCTAAGTCTTTGCCA
TCTTTTGTTGAATTTGAAAAAGTCAAAGATGAAACAAAAGAATTTTCATA
CCCCAACAATGGGTTCAGTGATAAAACACAATCTAATGATTTAATATTGT
CATTGGAAAAAATTACTTTAGATCTTAATCAAGTCATGACTGAATTAAAA
CGTGGAAATAATGAACATATACCGAAAGATATTGGATGTAATATAAACAA
TGGTACTAAATTCTCTTGTGATTATTTAACATCGAAATCTAAAGAAAATG
TTGTTAATATTGGTTATCAAAATCCTGGTGAAGAAATTTTAAAGAAAAAA
TGGGAGAAATACTTTGGATCGAATCTTGGAAAAAATACTAAGTCAAGTTA
CAGCTTATTATATGATAAAGGTTTAGGTAGCCATGCGTTCAATTCAATTA
ATTTATATGACGAAAAAAAGTTATCTACAGAGCATAAGTTAAAACAGCAT
AAAGCATGGATTGATAATTTTAATATTAAATAATGAATGTTGTTCGTGTA
TTAATCAGAT
back to top

protein sequence of SMED30028228-orf-1

>SMED30028228-orf-1 ID=SMED30028228-orf-1|Name=SMED30028228-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=795bp
MGDICVNGQIILEESRNDDYEPTEQEIRDYACLIGIDPDKESELMHVARM
GIKAPLPVNWKPCQDVNEDIYYFNFATGESMWDHPCDEYYRKIVLAEREK
LSNKTLERHLLKQDVNNITTEQLTPISLKTAIKSLQTNFLPDFVNHDIFN
KISSEDLKIVPQDKILDYYKDEENSGDLSYSESNNKQTSDSKSEDYGKFI
NFGLDKSLTDRLDNEPGNSMFFKDNIPNKINFRDSIDHIKVLEIEKKAEL
IDSKDNKKVAGDDLTNISLKESQLKAKINEKFDNLLIFENNTANSNEEKF
NHDNMELCSIDQNDTTKLSKNSPFGNNNSIDANTKMEILSSDKISEFQTI
HLKEINDLKSEFHNEKELITNKHQNEIKTIMANHTKEIEKLKNSHQSKII
SLNQENEIIKSTLSKLKSEFSEHVSNKSETEYLKNAYDEKIKILTDENQL
NKMKLAKLNSELSEKINIIDRYENNKNTEKQKIIEKSMFKANENDKELRT
VEYSLEHRKLELEYLNTEIKNLLLIKENLVKEIEKKKRYIKNRNSIIDRK
DSYVSPFVETRTVLSKEFCDSAVLLDEINCSDSEENDSLKSNFISKENKN
LMIKARCFMNQLGPSGYISRPNLLYQKYKSKSLPSFVEFEKVKDETKEFS
YPNNGFSDKTQSNDLILSLEKITLDLNQVMTELKRGNNEHIPKDIGCNIN
NGTKFSCDYLTSKSKENVVNIGYQNPGEEILKKKWEKYFGSNLGKNTKSS
YSLLYDKGLGSHAFNSINLYDEKKLSTEHKLKQHKAWIDNFNIK*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: cellular component
TermDefinition
GO:0043231intracellular membrane-bounded organelle
GO:0005615extracellular space
GO:0005634nucleus
GO:0005654nucleoplasm
GO:0005737cytoplasm
GO:0005813centrosome
GO:0005814centriole
GO:0005856cytoskeleton
GO:0005929cilium
GO:0016607nuclear speck
GO:0097539ciliary transition fiber
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000099neuron
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR036020WW_dom_sf
IPR001202WW_dom
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
Vocabulary: biological process
TermDefinition
GO:0006281DNA repair
GO:0006974cellular response to DNA damage stimulus
GO:0007049cell cycle
GO:0007067mitotic nuclear division
GO:0030030cell projection organization
GO:0051301cell division
GO:0060271cilium morphogenesis
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 399..419
NoneNo IPR availableCOILSCoilCoilcoord: 455..482
NoneNo IPR availableCOILSCoilCoilcoord: 669..689
NoneNo IPR availableGENE3DG3DSA:3.30.1470.10coord: 9..123
e-value: 1.5E-8
score: 36.1
NoneNo IPR availablePANTHERPTHR21715:SF0coord: 7..482
NoneNo IPR availablePANTHERPTHR21715UNCHARACTERIZEDcoord: 7..482
IPR001202WW domainSMARTSM00456ww_5coord: 55..87
e-value: 6.0E-4
score: 29.1
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 54..87
score: 11.92
IPR001202WW domainCDDcd00201WWcoord: 57..87
e-value: 2.9271E-6
score: 42.1298
IPR036020WW domain superfamilySUPERFAMILYSSF51045WW domaincoord: 45..87