RNA polymerase II subunit A C-terminal domain phosphatase

Overview


Name	RNA polymerase II subunit A C-terminal domain phosphatase
Smed ID	SMED30028216
Length (bp)	429

Neoblast Clusters

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Embryonic Expression

Davies et. al., 2017

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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30028216

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 4

Expressed In	Reference Transcript	Published Transcript	Transcriptome	Publication
gut	SMED30028216	Contig6262	newmark_ests	PMID:23079596 Forsthoefel et al., 2012
gut	SMED30028216	Contig6262	uc_Smed_v2	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30028216	Contig6262	newmark_ests	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30028216	Contig6262	uc_Smed_v2	PMID:23079596 Forsthoefel et al., 2012

Note: Hover over icons to view figure legend

Homology

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BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Human
Match: CTDP1 (CTD phosphatase subunit 1 [Source:HGNC Symbol;Acc:HGNC:2498])

HSP 1 Score: 72.7886 bits (177), Expect = 3.254e-15
Identity = 34/108 (31.48%), Postives = 61/108 (56.48%), Query Frame = 2

Query:    8 GYERFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFK 331
            G    + +LRP+  +FL KI+++YEL V + G + Y  +I   +DP+ K F +RI++R+      +K   L   F    +M+ +IDD+ +VW +   ++ V+ Y  F+
Sbjct:  149 GEPMLHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCIIDDREDVWKFAPNLITVKKYVYFQ 256

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Human
Match: CTDP1 (CTD phosphatase subunit 1 [Source:HGNC Symbol;Acc:HGNC:2498])

HSP 1 Score: 72.7886 bits (177), Expect = 3.286e-15
Identity = 34/108 (31.48%), Postives = 61/108 (56.48%), Query Frame = 2

Query:    8 GYERFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFK 331
            G    + +LRP+  +FL KI+++YEL V + G + Y  +I   +DP+ K F +RI++R+      +K   L   F    +M+ +IDD+ +VW +   ++ V+ Y  F+
Sbjct:  149 GEPMLHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCIIDDREDVWKFAPNLITVKKYVYFQ 256

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Human
Match: CTDP1 (CTD phosphatase subunit 1 [Source:HGNC Symbol;Acc:HGNC:2498])

HSP 1 Score: 72.7886 bits (177), Expect = 3.289e-15
Identity = 34/108 (31.48%), Postives = 61/108 (56.48%), Query Frame = 2

Query:    8 GYERFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFK 331
            G    + +LRP+  +FL KI+++YEL V + G + Y  +I   +DP+ K F +RI++R+      +K   L   F    +M+ +IDD+ +VW +   ++ V+ Y  F+
Sbjct:  217 GEPMLHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCIIDDREDVWKFAPNLITVKKYVYFQ 324

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Human
Match: CTDP1 (CTD phosphatase subunit 1 [Source:HGNC Symbol;Acc:HGNC:2498])

HSP 1 Score: 72.7886 bits (177), Expect = 3.289e-15
Identity = 34/108 (31.48%), Postives = 61/108 (56.48%), Query Frame = 2

Query:    8 GYERFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFK 331
            G    + +LRP+  +FL KI+++YEL V + G + Y  +I   +DP+ K F +RI++R+      +K   L   F    +M+ +IDD+ +VW +   ++ V+ Y  F+
Sbjct:  217 GEPMLHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCIIDDREDVWKFAPNLITVKKYVYFQ 324

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Human
Match: CTDP1 (CTD phosphatase subunit 1 [Source:HGNC Symbol;Acc:HGNC:2498])

HSP 1 Score: 72.7886 bits (177), Expect = 3.305e-15
Identity = 34/108 (31.48%), Postives = 61/108 (56.48%), Query Frame = 2

Query:    8 GYERFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFK 331
            G    + +LRP+  +FL KI+++YEL V + G + Y  +I   +DP+ K F +RI++R+      +K   L   F    +M+ +IDD+ +VW +   ++ V+ Y  F+
Sbjct:   98 GEPMLHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCIIDDREDVWKFAPNLITVKKYVYFQ 205

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Celegans
Match: fcp-1 (RNA polymerase II subunit A C-terminal domain phosphatase [Source:UniProtKB/Swiss-Prot;Acc:Q95QG8])

HSP 1 Score: 89.7373 bits (221), Expect = 1.206e-21
Identity = 38/103 (36.89%), Postives = 69/103 (66.99%), Query Frame = 2

Query:   29 KLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFKNV 337
            KLRP+  EFL K+S +YE+ +++ G++ Y   I +I+DPD + F+ RI++R+ +   ++K   L   F    N++V+IDD+ +VW Y++ +++++PY  FK V
Sbjct:  185 KLRPHTTEFLNKMSNMYEMHIVTYGQRQYAHRIAQILDPDARLFEQRILSRDELFSAQHKTNNLKALFPCGDNLVVIIDDRSDVWMYSEALIQIKPYRFFKEV 287

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Fly
Match: Fcp1 (gene:FBgn0035026 transcript:FBtr0072342)

HSP 1 Score: 82.8037 bits (203), Expect = 4.614e-19
Identity = 35/105 (33.33%), Postives = 66/105 (62.86%), Query Frame = 2

Query:   20 FYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFKN 334
            ++ +LRP   EFL ++S++YEL + + G ++Y   I +++DP+ KFF +RI++R+      +K   L   F    +M+ +IDD+ +VWN    +++V+PY  F++
Sbjct:  246 YHTRLRPGTAEFLERMSQLYELHICTFGARNYAHMIAQLLDPEGKFFSHRILSRDECFNATSKTDNLKALFPNGDSMVCIIDDREDVWNMASNLIQVKPYHFFQH 350

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Fly
Match: Fcp1 (gene:FBgn0035026 transcript:FBtr0343489)

HSP 1 Score: 82.8037 bits (203), Expect = 4.614e-19
Identity = 35/105 (33.33%), Postives = 66/105 (62.86%), Query Frame = 2

Query:   20 FYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFKN 334
            ++ +LRP   EFL ++S++YEL + + G ++Y   I +++DP+ KFF +RI++R+      +K   L   F    +M+ +IDD+ +VWN    +++V+PY  F++
Sbjct:  246 YHTRLRPGTAEFLERMSQLYELHICTFGARNYAHMIAQLLDPEGKFFSHRILSRDECFNATSKTDNLKALFPNGDSMVCIIDDREDVWNMASNLIQVKPYHFFQH 350

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Zebrafish
Match: ctdp1 (CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040720-1])

HSP 1 Score: 70.8626 bits (172), Expect = 9.431e-15
Identity = 33/108 (30.56%), Postives = 61/108 (56.48%), Query Frame = 2

Query:    8 GYERFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFK 331
            G    + +LRP+  +FL KI++++EL V + G + Y  +I   +DP+ K F +RI++R+      +K   L   F    +M+ +IDD+ +VW +   ++ V+ Y  F+
Sbjct:  204 GEPMLHTRLRPHCKDFLEKIAKLFELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCIIDDREDVWKFAPNLITVKKYIYFQ 311

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Zebrafish
Match: BX323045.1 (CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 3 [Source:NCBI gene;Acc:571337])

HSP 1 Score: 55.8398 bits (133), Expect = 1.123e-9
Identity = 35/137 (25.55%), Postives = 78/137 (56.93%), Query Frame = 2

Query:   17 RFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITRE---IIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFKNVDKNVEIQK---ELKNLMYCDNYLNKLQ 409
            + Y  LRP++ EFL  +++ +E+ V +  +K Y E IV I+DP+ K F++R+   +   ++G++   L  L R+  +     V++D+  + + Y+  ++ + P + +    ++ E+QK    ++ L++ D++ N L+
Sbjct:  138 KVYVILRPHVREFLQAMTKHFEMFVYTSAKKEYAEKIVDILDPNKKLFRHRLYQDDCACVLGHYIKDLTILERDLSKT----VILDNAPHTFPYH--LMNMIPIKSWIGDQEDRELQKLIPYMEKLVHADDFRNVLK 268

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Zebrafish
Match: ctdspl3 (CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 3 [Source:ZFIN;Acc:ZDB-GENE-141215-56])

HSP 1 Score: 55.0694 bits (131), Expect = 2.705e-9
Identity = 35/137 (25.55%), Postives = 78/137 (56.93%), Query Frame = 2

Query:   17 RFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITRE---IIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFKNVDKNVEIQKE---LKNLMYCDNYLNKLQ 409
            + Y  LRP++ EFL  +++ +E+ V +  +K Y E IV I+DP+ K F++R+   +   ++G++   L  L R+  +     V++D+  + + Y+  ++ + P + +    ++ E+QK    ++ L++ D++ N L+
Sbjct:  217 KVYVILRPHVREFLQAMTKHFEMFVYTSAKKEYAEKIVDILDPNKKLFRHRLYQDDCACVLGHYIKDLTILERDLSKT----VILDNAPHTFPYH--LMNMIPIKSWIGDQEDRELQKLIPYMEKLVHADDFRNVLK 347

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Zebrafish
Match: ctdspl2a (CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2a [Source:NCBI gene;Acc:558181])

HSP 1 Score: 54.299 bits (129), Expect = 4.621e-9
Identity = 30/122 (24.59%), Postives = 64/122 (52.46%), Query Frame = 2

Query:   17 RFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYN-DRVVKVEPYEVFKNVDKNVEIQKELKNLM 379
            + Y +LRP+  EFL ++S+IYE+ + +  +K Y + ++ I+DP  +  ++R+     +    N +  L    G   +  V+ID+    + Y     + +E + V KN ++ +++   L+ L+
Sbjct:  326 QVYVRLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDL-NILGRDLSKTVIIDNSPQAFAYQLSNGIPIESWFVDKNDNELLKLVPFLEKLV 446

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Zebrafish
Match: ctdspl2b (CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2b [Source:NCBI gene;Acc:323089])

HSP 1 Score: 51.6026 bits (122), Expect = 4.252e-8
Identity = 23/91 (25.27%), Postives = 48/91 (52.75%), Query Frame = 2

Query:   17 RFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNY 289
            + Y +LRP+  EFL ++S+IYE+ + +  +K Y + ++ I+DP  +  ++R+     +    N +  L    G   +  ++ID+    + Y
Sbjct:  317 QVYVRLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPRKQLVRHRLFREHCVCVQGNYIKDL-NILGRDLSKTIIIDNSPQAFAY 406

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Xenopus
Match: MGC115163 (CTD phosphatase subunit 1 [Source:HGNC Symbol;Acc:HGNC:2498])

HSP 1 Score: 73.1738 bits (178), Expect = 2.025e-15
Identity = 34/108 (31.48%), Postives = 61/108 (56.48%), Query Frame = 2

Query:    8 GYERFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFK 331
            G    + +LRP+  EFL KI++++EL V + G + Y  +I   +DP+ K F +RI++R+      +K   L   F    +M+ +IDD+ +VW +   ++ V+ Y  F+
Sbjct:  215 GEPMLHTRLRPHCKEFLEKIAKLFELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPYSKTGNLRNLFPCGDSMVCIIDDREDVWKFAPNLITVKKYVYFQ 322

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Xenopus
Match: MGC115163 (CTD phosphatase subunit 1 [Source:HGNC Symbol;Acc:HGNC:2498])

HSP 1 Score: 73.1738 bits (178), Expect = 2.135e-15
Identity = 34/108 (31.48%), Postives = 61/108 (56.48%), Query Frame = 2

Query:    8 GYERFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFK 331
            G    + +LRP+  EFL KI++++EL V + G + Y  +I   +DP+ K F +RI++R+      +K   L   F    +M+ +IDD+ +VW +   ++ V+ Y  F+
Sbjct:  219 GEPMLHTRLRPHCKEFLEKIAKLFELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPYSKTGNLRNLFPCGDSMVCIIDDREDVWKFAPNLITVKKYVYFQ 326

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Xenopus
Match: MGC115163 (CTD phosphatase subunit 1 [Source:HGNC Symbol;Acc:HGNC:2498])

HSP 1 Score: 73.1738 bits (178), Expect = 2.167e-15
Identity = 34/108 (31.48%), Postives = 61/108 (56.48%), Query Frame = 2

Query:    8 GYERFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFK 331
            G    + +LRP+  EFL KI++++EL V + G + Y  +I   +DP+ K F +RI++R+      +K   L   F    +M+ +IDD+ +VW +   ++ V+ Y  F+
Sbjct:  212 GEPMLHTRLRPHCKEFLEKIAKLFELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPYSKTGNLRNLFPCGDSMVCIIDDREDVWKFAPNLITVKKYVYFQ 319

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Xenopus
Match: MGC115163 (CTD phosphatase subunit 1 [Source:HGNC Symbol;Acc:HGNC:2498])

HSP 1 Score: 73.1738 bits (178), Expect = 2.168e-15
Identity = 34/108 (31.48%), Postives = 61/108 (56.48%), Query Frame = 2

Query:    8 GYERFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFK 331
            G    + +LRP+  EFL KI++++EL V + G + Y  +I   +DP+ K F +RI++R+      +K   L   F    +M+ +IDD+ +VW +   ++ V+ Y  F+
Sbjct:  215 GEPMLHTRLRPHCKEFLEKIAKLFELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPYSKTGNLRNLFPCGDSMVCIIDDREDVWKFAPNLITVKKYVYFQ 322

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Xenopus
Match: MGC115163 (CTD phosphatase subunit 1 [Source:HGNC Symbol;Acc:HGNC:2498])

HSP 1 Score: 73.1738 bits (178), Expect = 2.169e-15
Identity = 34/108 (31.48%), Postives = 61/108 (56.48%), Query Frame = 2

Query:    8 GYERFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFK 331
            G    + +LRP+  EFL KI++++EL V + G + Y  +I   +DP+ K F +RI++R+      +K   L   F    +M+ +IDD+ +VW +   ++ V+ Y  F+
Sbjct:  219 GEPMLHTRLRPHCKEFLEKIAKLFELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPYSKTGNLRNLFPCGDSMVCIIDDREDVWKFAPNLITVKKYVYFQ 326

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Mouse
Match: Ctdp1 (CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 [Source:MGI Symbol;Acc:MGI:1926953])

HSP 1 Score: 72.0182 bits (175), Expect = 3.519e-15
Identity = 34/107 (31.78%), Postives = 60/107 (56.07%), Query Frame = 2

Query:    8 GYERFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVF 328
            G    + +LRP+  +FL KI+++YEL V + G + Y  +I   +DP+ K F +RI++R+      +K   L   F    +M+ +IDD+ +VW +   ++ V+ Y  F
Sbjct:  217 GEPMLHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCIIDDREDVWKFAPNLITVKKYVYF 323

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Mouse
Match: Ctdspl2 (CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 [Source:MGI Symbol;Acc:MGI:1196405])

HSP 1 Score: 50.0618 bits (118), Expect = 1.620e-7
Identity = 22/91 (24.18%), Postives = 48/91 (52.75%), Query Frame = 2

Query:   17 RFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNY 289
            + Y +LRP+  EFL ++S++YE+ + +  +K Y + ++ I+DP  +  ++R+     +    N +  L    G   +  ++ID+    + Y
Sbjct:  321 QVYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDL-NILGRDLSKTIIIDNSPQAFAY 410

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Mouse
Match: Ctdspl2 (CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 [Source:MGI Symbol;Acc:MGI:1196405])

HSP 1 Score: 50.0618 bits (118), Expect = 1.621e-7
Identity = 22/91 (24.18%), Postives = 48/91 (52.75%), Query Frame = 2

Query:   17 RFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNY 289
            + Y +LRP+  EFL ++S++YE+ + +  +K Y + ++ I+DP  +  ++R+     +    N +  L    G   +  ++ID+    + Y
Sbjct:  322 QVYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDL-NILGRDLSKTIIIDNSPQAFAY 411

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Mouse
Match: Ctdspl2 (CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 [Source:MGI Symbol;Acc:MGI:1196405])

HSP 1 Score: 50.0618 bits (118), Expect = 1.621e-7
Identity = 22/91 (24.18%), Postives = 48/91 (52.75%), Query Frame = 2

Query:   17 RFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNY 289
            + Y +LRP+  EFL ++S++YE+ + +  +K Y + ++ I+DP  +  ++R+     +    N +  L    G   +  ++ID+    + Y
Sbjct:  322 QVYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDL-NILGRDLSKTIIIDNSPQAFAY 411

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Mouse
Match: Ctdspl2 (CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 [Source:MGI Symbol;Acc:MGI:1196405])

HSP 1 Score: 46.9802 bits (110), Expect = 1.897e-6
Identity = 22/89 (24.72%), Postives = 47/89 (52.81%), Query Frame = 2

Query:   23 YFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNY 289
            Y +LRP+  EFL ++S++YE+ + +  +K Y + ++ I+DP  +  ++R+     +    N +  L    G   +  ++ID+    + Y
Sbjct:  253 YVRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDL-NILGRDLSKTIIIDNSPQAFAY 340

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. UniProt/SwissProt
Match: sp|Q9P376|FCP1_SCHPO (RNA polymerase II subunit A C-terminal domain phosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=fcp1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.528e-23
Identity = 46/103 (44.66%), Postives = 71/103 (68.93%), Query Frame = 2

Query:   20 FYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVF 328
            +Y K RP L +FL KISE+YEL + ++G K+Y + + KIIDP  K F++R+++R+  G    K  +L R F   ++M+VVIDD+ +VW++N  ++KV PYE F
Sbjct:  218 YYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQK--SLRRLFPCDTSMVVVIDDRGDVWDWNPNLIKVVPYEFF 318

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. UniProt/SwissProt
Match: sp|Q95QG8|FCP1_CAEEL (RNA polymerase II subunit A C-terminal domain phosphatase OS=Caenorhabditis elegans OX=6239 GN=fcp-1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.534e-20
Identity = 38/103 (36.89%), Postives = 69/103 (66.99%), Query Frame = 2

Query:   29 KLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFKNV 337
            KLRP+  EFL K+S +YE+ +++ G++ Y   I +I+DPD + F+ RI++R+ +   ++K   L   F    N++V+IDD+ +VW Y++ +++++PY  FK V
Sbjct:  185 KLRPHTTEFLNKMSNMYEMHIVTYGQRQYAHRIAQILDPDARLFEQRILSRDELFSAQHKTNNLKALFPCGDNLVVIIDDRSDVWMYSEALIQIKPYRFFKEV 287

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. UniProt/SwissProt
Match: sp|Q8SV03|FCP1_ENCCU (RNA polymerase II subunit A C-terminal domain phosphatase OS=Encephalitozoon cuniculi (strain GB-M1) OX=284813 GN=FCP1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.945e-18
Identity = 46/111 (41.44%), Postives = 70/111 (63.06%), Query Frame = 2

Query:   17 RFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITR-EIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFKNVDKN 346
            R+  KLRP L+  L +IS++YE+ V ++G ++Y E IV+IIDP  K+F +RIITR E  G    +L+ L   F      IV++DD+ +VW+Y + +V + P+  F  VD N
Sbjct:   93 RYCVKLRPNLDYMLRRISKLYEIHVYTMGTRAYAERIVEIIDPSGKYFDDRIITRDENQGVLVKRLSRL---FPHDHRNIVILDDRPDVWDYCENLVLIRPFWYFNRVDIN 200

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. UniProt/SwissProt
Match: sp|Q03254|FCP1_YEAST (RNA polymerase II subunit A C-terminal domain phosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FCP1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.870e-17
Identity = 38/106 (35.85%), Postives = 65/106 (61.32%), Query Frame = 2

Query:   20 FYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFKNV 337
            +Y K+RP L EF  K++ ++E+ + ++  ++Y   I KI+DP  + F +RI++R+  G    K  +L + F    +M+VVIDD+ +VWN+   ++KV PY  F  V
Sbjct:  245 YYVKVRPGLKEFFAKVAPLFEMHIYTMATRAYALQIAKIVDPTGELFGDRILSRDENGSLTTK--SLAKLFPTDQSMVVVIDDRGDVWNWCPNLIKVVPYNFFVGV 348

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. UniProt/SwissProt
Match: sp|Q9Y5B0|CTDP1_HUMAN (RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo sapiens OX=9606 GN=CTDP1 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.609e-14
Identity = 34/108 (31.48%), Postives = 61/108 (56.48%), Query Frame = 2

Query:    8 GYERFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFK 331
            G    + +LRP+  +FL KI+++YEL V + G + Y  +I   +DP+ K F +RI++R+      +K   L   F    +M+ +IDD+ +VW +   ++ V+ Y  F+
Sbjct:  217 GEPMLHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCIIDDREDVWKFAPNLITVKKYVYFQ 324

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. TrEMBL
Match: A0A086T8G2 (RNA polymerase II subunit A C-terminal domain phosphatase OS=Acremonium chrysogenum (strain ATCC 11550 / CBS 779.69 / DSM 880 / JCM 23072 / IMI 49137) OX=857340 GN=ACRE_035200 PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.463e-23
Identity = 48/107 (44.86%), Postives = 74/107 (69.16%), Query Frame = 2

Query:   20 FYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYN-DRVVKVEPYEVFKNV 337
            +Y KLRP L EFL ++S++YEL V ++G ++Y ++I +I+DPD K F NR+I+R+  G   +K  TL R F   +NM+V+IDD+ +VW  N   ++KV PY+ FK +
Sbjct:  215 YYIKLRPSLKEFLQEVSKMYELHVYTMGTRAYAQNIARIVDPDRKLFGNRVISRDENGNMTSK--TLQRLFPVSTNMVVIIDDRADVWPKNRPNLIKVVPYDFFKGI 319

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. TrEMBL
Match: A0A1Y1WNB0 (RNA polymerase II subunit A C-terminal domain phosphatase OS=Linderina pennispora OX=61395 GN=DL89DRAFT_22946 PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.116e-23
Identity = 45/110 (40.91%), Postives = 73/110 (66.36%), Query Frame = 2

Query:    8 GYERFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFKNV 337
            G  R+Y KLRP L EFL KIS++YE+ + ++G + Y E++   IDP +++FK RI++R+  G   +K  TL R F   ++M+V +DD+ +VW ++  ++KV+PY  F  V
Sbjct:  228 GPHRYYIKLRPNLREFLEKISDMYEMHIYTMGTRHYAEAVAATIDPGHRYFKERILSRDESGSVTHK--TLRRLFPCDTSMVVALDDRADVWQWSPNLIKVQPYAFFSGV 335

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. TrEMBL
Match: A0A433PBL8 (RNA polymerase II subunit A C-terminal domain phosphatase OS=Endogone sp. FLAS-F59071 OX=2340872 GN=BC937DRAFT_93163 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.050e-22
Identity = 44/103 (42.72%), Postives = 76/103 (73.79%), Query Frame = 2

Query:   20 FYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVF 328
            +Y KLRP L +FL++++++YEL + ++G ++Y E++ K IDPD K+FK RI++R+  G   +K  T+ R F   ++M+VVIDD+ +VWN++  ++KV+PY+ F
Sbjct:  197 YYIKLRPDLRQFLSEVTKLYELHIYTMGTRNYAEAVAKEIDPDKKYFKERILSRDESGSMTHK--TIQRLFPCDTSMVVVIDDRSDVWNWSPNLIKVQPYDFF 297

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. TrEMBL
Match: A0A1E3PCA8 (RNA polymerase II subunit A C-terminal domain phosphatase OS=Wickerhamomyces anomalus (strain ATCC 58044 / CBS 1984 / NCYC 433 / NRRL Y-366-8) OX=683960 GN=WICANDRAFT_99028 PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.178e-22
Identity = 47/103 (45.63%), Postives = 75/103 (72.82%), Query Frame = 2

Query:   20 FYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVF 328
            +Y KLRP L EFL KIS+IYEL + ++G ++Y +SI KIIDP+ ++F +RI++R+  G    K  +L R F   ++M+V+IDD+ +VWN++D ++KV P++ F
Sbjct:   96 YYVKLRPGLEEFLKKISKIYELHIYTMGTRAYAKSIAKIIDPEGEYFADRILSRDESGSLTQK--SLERLFPTDTSMVVIIDDRGDVWNWSDHLIKVVPFDFF 196

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. TrEMBL
Match: A0A446BTC4 (RNA polymerase II subunit A C-terminal domain phosphatase OS=Thermothielavioides terrestris OX=2587410 GN=TT172_LOCUS8185 PE=4 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.052e-22
Identity = 52/134 (38.81%), Postives = 84/134 (62.69%), Query Frame = 2

Query:   20 FYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLA-TLMREFGECSNMIVVIDDQVNVWNYN-DRVVKVEPYEVFKNV-DKNVEIQKELKNLMYCDNYLNKLQS 412
            +Y K+RP L EFL +ISE+YE+ V ++G ++Y +++ +++DP  K F NR+I+R+  G   N  A +L R F   +NM+V+IDD+ +VW  N   ++KV PYE FK + D N     +  +L+  D   N +Q+
Sbjct:  218 YYIKMRPGLEEFLKRISELYEMHVYTMGTRAYAQNVARVVDPQRKLFGNRVISRDENG---NMFAKSLGRLFPVSTNMVVIIDDRSDVWPRNRPNLIKVSPYEFFKGIGDINSSFLPKRHDLLTSDAATNGVQN 348

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Cavefish
Match: ctdp1 (CTD phosphatase subunit 1 [Source:NCBI gene;Acc:103047396])

HSP 1 Score: 77.7962 bits (190), Expect = 3.251e-17
Identity = 37/108 (34.26%), Postives = 60/108 (55.56%), Query Frame = 2

Query:    8 GYERFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFK 331
            G    + +LRPY  EFL KI+++YEL V + G + Y  +I   +DP+ K F +RI++R+      +K   L   F    +M+ +IDD+ +VW +   ++ V  Y  FK
Sbjct:  210 GEPMLHTRLRPYCKEFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPYSKTGNLRNLFPCGDSMVCIIDDREDVWKFAPNLITVRKYVYFK 317

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Cavefish
Match: ctdp1 (CTD phosphatase subunit 1 [Source:NCBI gene;Acc:103047396])

HSP 1 Score: 77.7962 bits (190), Expect = 3.266e-17
Identity = 37/108 (34.26%), Postives = 60/108 (55.56%), Query Frame = 2

Query:    8 GYERFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFK 331
            G    + +LRPY  EFL KI+++YEL V + G + Y  +I   +DP+ K F +RI++R+      +K   L   F    +M+ +IDD+ +VW +   ++ V  Y  FK
Sbjct:  210 GEPMLHTRLRPYCKEFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPYSKTGNLRNLFPCGDSMVCIIDDREDVWKFAPNLITVRKYVYFK 317

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Cavefish
Match: ctdspl2a (CTD small phosphatase-like protein 2-A [Source:NCBI gene;Acc:103024839])

HSP 1 Score: 56.6102 bits (135), Expect = 6.161e-10
Identity = 30/122 (24.59%), Postives = 65/122 (53.28%), Query Frame = 2

Query:   17 RFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYN-DRVVKVEPYEVFKNVDKNVEIQKELKNLM 379
            + Y +LRP+  EFL ++S+IYE+ + +  +K Y + ++ I+DP  +  ++R+     +    N +  L    G   +  ++ID+    + Y     + +E + V KN ++ +++   L+NL+
Sbjct:  327 QVYVRLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDL-NILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFVDKNDNELLKLVPFLENLV 447

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Cavefish
Match: ctdspl2a (CTD small phosphatase-like protein 2-A [Source:NCBI gene;Acc:103024839])

HSP 1 Score: 56.6102 bits (135), Expect = 6.341e-10
Identity = 30/120 (25.00%), Postives = 64/120 (53.33%), Query Frame = 2

Query:   23 YFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYN-DRVVKVEPYEVFKNVDKNVEIQKELKNLM 379
            Y +LRP+  EFL ++S+IYE+ + +  +K Y + ++ I+DP  +  ++R+     +    N +  L    G   +  ++ID+    + Y     + +E + V KN ++ +++   L+NL+
Sbjct:  308 YVRLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDL-NILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFVDKNDNELLKLVPFLENLV 426

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Cavefish
Match: ctdspl2b (CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2b [Source:NCBI gene;Acc:323089])

HSP 1 Score: 53.1434 bits (126), Expect = 1.075e-8
Identity = 27/110 (24.55%), Postives = 58/110 (52.73%), Query Frame = 2

Query:   17 RFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREII---GYHKNKLATLMREFGECSNMIVVIDDQVNVWNYN-DRVVKVEPYEVFKN 334
            + Y +LRP+  EFL ++S+IYE+ + +  +K Y + ++ I+DP  +  ++R+     +   G +   L+ L R+  +     ++ID+    + Y     + +E + V +N
Sbjct:  302 QVYVRLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLSILGRDLSK----TIIIDNSPQAFAYQLSNGIPIESWFVDRN 407

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Sea Lamprey
Match: ctdp1 (CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040720-1])

HSP 1 Score: 71.2478 bits (173), Expect = 1.196e-15
Identity = 36/108 (33.33%), Postives = 57/108 (52.78%), Query Frame = 2

Query:    8 GYERFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFK 331
            G    + +LRP+   FL KI+E+YEL V + G + Y  +I   +DP+ K F +RI++R+       K   L   F    +M+ +IDD+ +VW     +V V  Y  F+
Sbjct:  112 GQPMLHTRLRPHCRSFLQKIAELYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPYCKTGNLKNLFPCGDSMVCIIDDREDVWRSAPNLVAVRKYVYFQ 219

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010797.1 (pep scaffold:Pmarinus_7.0:GL476346:608242:622413:1 gene:ENSPMAG00000009781.1 transcript:ENSPMAT00000010797.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 53.9138 bits (128), Expect = 1.159e-9
Identity = 28/107 (26.17%), Postives = 55/107 (51.40%), Query Frame = 2

Query:   17 RFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYN-DRVVKVEPYEVFKN 334
            + Y +LRP+  EFL ++S+IYE+ + +  +K Y + ++ I+DP  K  K+R+     +    N +  L    G   +  +++D+    + Y     + +E + V KN
Sbjct:  332 QVYVRLRPHFREFLERMSKIYEVILFTASKKVYADKLLNILDPKKKLVKHRLFREHCVCVQGNYVKDL-NILGRDLSKTIIVDNSPQAFAYQLSNGIPIESWFVDKN 437

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Sea Lamprey
Match: ENSPMAT00000001121.1 (pep scaffold:Pmarinus_7.0:GL485372:3962:9133:1 gene:ENSPMAG00000000998.1 transcript:ENSPMAT00000001121.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 46.595 bits (109), Expect = 3.647e-7
Identity = 23/90 (25.56%), Postives = 46/90 (51.11%), Query Frame = 2

Query:   23 YFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYN 292
            Y +LRPY  EFL ++S+ +E+ + +  +K Y + ++ I+DP  K  ++R+     +    N +  L    G   +  ++ID+    + Y 
Sbjct:  233 YVRLRPYFREFLERMSKHFEIILFTASKKVYADKLLNILDPAKKLVRHRLFREHCVCVQGNYIKDL-NILGRDLSKTIIIDNSPQAFAYQ 321

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Yeast
Match: FCP1 (Carboxy-terminal domain (CTD) phosphatase; essential for dephosphorylation of the repeated C-terminal domain of the RNA polymerase II large subunit (Rpo21p); relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000004890])

HSP 1 Score: 79.337 bits (194), Expect = 9.893e-19
Identity = 38/106 (35.85%), Postives = 65/106 (61.32%), Query Frame = 2

Query:   20 FYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFKNV 337
            +Y K+RP L EF  K++ ++E+ + ++  ++Y   I KI+DP  + F +RI++R+  G    K  +L + F    +M+VVIDD+ +VWN+   ++KV PY  F  V
Sbjct:  245 YYVKVRPGLKEFFAKVAPLFEMHIYTMATRAYALQIAKIVDPTGELFGDRILSRDENGSLTTK--SLAKLFPTDQSMVVVIDDRGDVWNWCPNLIKVVPYNFFVGV 348

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Nematostella
Match: EDO40177 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S820])

HSP 1 Score: 82.4185 bits (202), Expect = 2.591e-21
Identity = 40/116 (34.48%), Postives = 68/116 (58.62%), Query Frame = 2

Query:   20 FYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFKNV-DKNVEIQKE 364
            ++ K RP+ ++FL KI++ YEL + ++G + Y  +I +++DPD   F  RI +R+      +K   L   F    +M+ +IDD+ +VWN    ++KV+PY+ FK V D N    K+
Sbjct:    3 YHTKFRPWAHKFLQKIAKFYELHIFTMGTRMYAHTIARMLDPDLSLFGYRIRSRDDCFNAFSKFNDLRSLFPCGDSMVCIIDDRADVWNNAPSLIKVKPYQFFKGVGDINAPPDKQ 118

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Nematostella
Match: EDO48206 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RK91])

HSP 1 Score: 45.8246 bits (107), Expect = 1.006e-6
Identity = 20/93 (21.51%), Postives = 51/93 (54.84%), Query Frame = 2

Query:   23 YFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKN---KLATLMREFGECSNMIVVIDDQVNVWNYN 292
            + + RP+L  FL ++S+++E+ + +  ++ Y + ++ I+DP+ K+F++R+     +    N    L+ L R+  +     +++D+    + Y 
Sbjct:  141 FVRTRPHLKYFLERVSKVFEVILFTASKRVYADKLLNILDPEKKYFRHRLFREHCVCVQGNYIKDLSILGRDLSKT----MIVDNSPQAFAYQ 229

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Medaka
Match: ctdp1 (CTD phosphatase subunit 1 [Source:NCBI gene;Acc:101165823])

HSP 1 Score: 71.633 bits (174), Expect = 4.286e-15
Identity = 34/108 (31.48%), Postives = 60/108 (55.56%), Query Frame = 2

Query:    8 GYERFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFK 331
            G    + +LRP+  EFL K +++YEL V + G + Y  +I   +DP+ K F +RI++R+      +K   L   F    +M+ +IDD+ +VW +   ++ V+ Y  F+
Sbjct:  207 GEPMLHTRLRPHCKEFLEKTAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRYLFPCGDSMVCIIDDREDVWKFAPNLITVKKYVYFQ 314

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Medaka
Match: ctdp1 (CTD phosphatase subunit 1 [Source:NCBI gene;Acc:101165823])

HSP 1 Score: 71.633 bits (174), Expect = 4.320e-15
Identity = 34/108 (31.48%), Postives = 60/108 (55.56%), Query Frame = 2

Query:    8 GYERFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFK 331
            G    + +LRP+  EFL K +++YEL V + G + Y  +I   +DP+ K F +RI++R+      +K   L   F    +M+ +IDD+ +VW +   ++ V+ Y  F+
Sbjct:  207 GEPMLHTRLRPHCKEFLEKTAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRYLFPCGDSMVCIIDDREDVWKFAPNLITVKKYVYFQ 314

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Medaka
Match: ctdp1 (CTD phosphatase subunit 1 [Source:NCBI gene;Acc:101165823])

HSP 1 Score: 71.633 bits (174), Expect = 4.357e-15
Identity = 34/108 (31.48%), Postives = 60/108 (55.56%), Query Frame = 2

Query:    8 GYERFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFK 331
            G    + +LRP+  EFL K +++YEL V + G + Y  +I   +DP+ K F +RI++R+      +K   L   F    +M+ +IDD+ +VW +   ++ V+ Y  F+
Sbjct:  207 GEPMLHTRLRPHCKEFLEKTAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRYLFPCGDSMVCIIDDREDVWKFAPNLITVKKYVYFQ 314

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Medaka
Match: ctdspl3 (CTD small phosphatase-like protein 2-B [Source:NCBI gene;Acc:101165797])

HSP 1 Score: 59.3066 bits (142), Expect = 6.262e-11
Identity = 37/132 (28.03%), Postives = 74/132 (56.06%), Query Frame = 2

Query:   17 RFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITRE---IIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFKNVDKNVEIQKE---LKNLMYCDNY 394
            + Y  LRP++ EFL  +++IYEL V +  +K Y E I++I DP  K F++R+   +   ++G++   L+ L R+  +     VV+D+  + + Y+  ++   P + +    ++ E+QK    ++ L+  DN+
Sbjct:  238 KAYMILRPHVREFLQAMAKIYELFVYTCAKKEYAEKILEIFDPQKKLFRHRLYQDDCACVLGHYIKDLSILGRDLTKT----VVLDNAPHTYPYH--LMNTIPIKSWSGEAEDRELQKLIPYMEKLVAADNF 363

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Medaka
Match: ctdspl2a (CTD small phosphatase-like protein 2-A [Source:NCBI gene;Acc:101171327])

HSP 1 Score: 53.1434 bits (126), Expect = 1.031e-8
Identity = 29/122 (23.77%), Postives = 64/122 (52.46%), Query Frame = 2

Query:   17 RFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYN-DRVVKVEPYEVFKNVDKNVEIQKELKNLM 379
            + Y +LRP+  EFL ++S++YE+ + +  +K Y + ++ I+DP  +  ++R+     +    N +  L    G   +  V+ID+    + Y     + +E + V KN ++ +++   L+ L+
Sbjct:  330 QVYVRLRPFFREFLERMSQLYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDL-NILGRDLSKTVIIDNSPQAFAYQLSNGIPIESWFVDKNDNELLKLVPFLEKLV 450

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Planmine SMEST
Match: SMESG000016847.1 (SMESG000016847.1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.966e-23
Identity = 47/122 (38.52%), Postives = 72/122 (59.02%), Query Frame = 2

Query:   29 KLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFKNVDKNVEIQKELKNLMYCDNY 394
            K+RP L  FL ++SE++EL VMSLG + Y+E ++K IDP   FF NRII+ E I Y  NK + L   F +  N+++ IDD   VW     +V V PY++F+N    ++    L  +   +++
Sbjct:   60 KMRPGLESFLKEMSELFELHVMSLGSRVYLEMVLKKIDPKGTFFHNRIISAEDI-YKDNKYSKLQELFPDGDNIVLAIDDTSKVWKGYKSLVSVVPYQIFENTKLTIKTDPLLNQIASHEHF 180

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Planmine SMEST
Match: SMESG000064687.1 (SMESG000064687.1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.038e-21
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 2

Query:   20 FYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVF 328
            ++ K RPYL +FL +++  YE+ + + G KSY E I +IIDPD  FF  RII+++       K A L   F    NM+ +IDD+ +VWN     + V+PY  F
Sbjct:  182 YHTKFRPYLKQFLNEMNSFYEMHIYTFGNKSYAEKIAEIIDPDKHFFGPRIISKDDSFDSMKKSANLKSLFPRGDNMVCIIDDRTDVWNNAPNCIHVQPYTFF 284

[Close]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Planmine SMEST
Match: SMESG000081685.1 (SMESG000081685.1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.622e-21
Identity = 47/128 (36.72%), Postives = 76/128 (59.38%), Query Frame = 2

Query:   44 LNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDNKFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRVVKVEPYEVFKNVDKNVEIQKELKNLMYCDNYLNKLQSILFKL 427
            L ++   + E +EL V+S GEK Y+++I+ +IDP  K F  RI TRE +  H +KL  L + F    NMI +IDD+ +VW  +D+V++V PY   K +  N+     L+     D+ L+ + +ILF++
Sbjct:   65 LPQYAYNMFEKFELHVISHGEKMYIKNIMSLIDPAKKLFGKRITTREKLNGH-SKLKALHKHFPSFRNMICIIDDRTDVWECSDQVIRVPPYNFLKKLIMNLSFTNGLEYEEDSDDCLDNITNILFEI 191

The following BLAST results are available for this feature:

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Human
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Celegans
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Fly
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Zebrafish
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Xenopus
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Mouse
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. UniProt/SwissProt
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. TrEMBL
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Cavefish
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Sea Lamprey
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Yeast
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Nematostella
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Medaka
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Planmine SMEST

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
CTDP1	3.254e-15	31.48	CTD phosphatase subunit 1 [Source:HGNC Symbol;Acc:...	[more]
CTDP1	3.286e-15	31.48	CTD phosphatase subunit 1 [Source:HGNC Symbol;Acc:...	[more]
CTDP1	3.289e-15	31.48	CTD phosphatase subunit 1 [Source:HGNC Symbol;Acc:...	[more]
CTDP1	3.289e-15	31.48	CTD phosphatase subunit 1 [Source:HGNC Symbol;Acc:...	[more]
CTDP1	3.305e-15	31.48	CTD phosphatase subunit 1 [Source:HGNC Symbol;Acc:...	[more]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1


Match Name	E-value	Identity	Description
fcp-1	1.206e-21	36.89	RNA polymerase II subunit A C-terminal domain phos...	[more]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2


Match Name	E-value	Identity	Description
Fcp1	4.614e-19	33.33	gene:FBgn0035026 transcript:FBtr0072342	[more]
Fcp1	4.614e-19	33.33	gene:FBgn0035026 transcript:FBtr0343489	[more]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ctdp1	9.431e-15	30.56	CTD (carboxy-terminal domain, RNA polymerase II, p...	[more]
BX323045.1	1.123e-9	25.55	CTD (carboxy-terminal domain, RNA polymerase II, p...	[more]
ctdspl3	2.705e-9	25.55	CTD (carboxy-terminal domain, RNA polymerase II, p...	[more]
ctdspl2a	4.621e-9	24.59	CTD (carboxy-terminal domain, RNA polymerase II, p...	[more]
ctdspl2b	4.252e-8	25.27	CTD (carboxy-terminal domain, RNA polymerase II, p...	[more]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
MGC115163	2.025e-15	31.48	CTD phosphatase subunit 1 [Source:HGNC Symbol;Acc:...	[more]
MGC115163	2.135e-15	31.48	CTD phosphatase subunit 1 [Source:HGNC Symbol;Acc:...	[more]
MGC115163	2.167e-15	31.48	CTD phosphatase subunit 1 [Source:HGNC Symbol;Acc:...	[more]
MGC115163	2.168e-15	31.48	CTD phosphatase subunit 1 [Source:HGNC Symbol;Acc:...	[more]
MGC115163	2.169e-15	31.48	CTD phosphatase subunit 1 [Source:HGNC Symbol;Acc:...	[more]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Ctdp1	3.519e-15	31.78	CTD (carboxy-terminal domain, RNA polymerase II, p...	[more]
Ctdspl2	1.620e-7	24.18	CTD (carboxy-terminal domain, RNA polymerase II, p...	[more]
Ctdspl2	1.621e-7	24.18	CTD (carboxy-terminal domain, RNA polymerase II, p...	[more]
Ctdspl2	1.621e-7	24.18	CTD (carboxy-terminal domain, RNA polymerase II, p...	[more]
Ctdspl2	1.897e-6	24.72	CTD (carboxy-terminal domain, RNA polymerase II, p...	[more]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q9P376\|FCP1_SCHPO	1.528e-23	44.66	RNA polymerase II subunit A C-terminal domain phos...	[more]
sp\|Q95QG8\|FCP1_CAEEL	1.534e-20	36.89	RNA polymerase II subunit A C-terminal domain phos...	[more]
sp\|Q8SV03\|FCP1_ENCCU	5.945e-18	41.44	RNA polymerase II subunit A C-terminal domain phos...	[more]
sp\|Q03254\|FCP1_YEAST	6.870e-17	35.85	RNA polymerase II subunit A C-terminal domain phos...	[more]
sp\|Q9Y5B0\|CTDP1_HUMAN	1.609e-14	31.48	RNA polymerase II subunit A C-terminal domain phos...	[more]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A086T8G2	8.463e-23	44.86	RNA polymerase II subunit A C-terminal domain phos...	[more]
A0A1Y1WNB0	9.116e-23	40.91	RNA polymerase II subunit A C-terminal domain phos...	[more]
A0A433PBL8	1.050e-22	42.72	RNA polymerase II subunit A C-terminal domain phos...	[more]
A0A1E3PCA8	1.178e-22	45.63	RNA polymerase II subunit A C-terminal domain phos...	[more]
A0A446BTC4	4.052e-22	38.81	RNA polymerase II subunit A C-terminal domain phos...	[more]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ctdp1	3.251e-17	34.26	CTD phosphatase subunit 1 [Source:NCBI gene;Acc:10...	[more]
ctdp1	3.266e-17	34.26	CTD phosphatase subunit 1 [Source:NCBI gene;Acc:10...	[more]
ctdspl2a	6.161e-10	24.59	CTD small phosphatase-like protein 2-A [Source:NCB...	[more]
ctdspl2a	6.341e-10	25.00	CTD small phosphatase-like protein 2-A [Source:NCB...	[more]
ctdspl2b	1.075e-8	24.55	CTD (carboxy-terminal domain, RNA polymerase II, p...	[more]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 3


Match Name	E-value	Identity	Description
ctdp1	1.196e-15	33.33	CTD (carboxy-terminal domain, RNA polymerase II, p...	[more]
ENSPMAT00000010797.1	1.159e-9	26.17	pep scaffold:Pmarinus_7.0:GL476346:608242:622413:1...	[more]
ENSPMAT00000001121.1	3.647e-7	25.56	pep scaffold:Pmarinus_7.0:GL485372:3962:9133:1 gen...	[more]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
FCP1	9.893e-19	35.85	Carboxy-terminal domain (CTD) phosphatase; essenti...	[more]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2


Match Name	E-value	Identity	Description
EDO40177	2.591e-21	34.48	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO48206	1.006e-6	21.51	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ctdp1	4.286e-15	31.48	CTD phosphatase subunit 1 [Source:NCBI gene;Acc:10...	[more]
ctdp1	4.320e-15	31.48	CTD phosphatase subunit 1 [Source:NCBI gene;Acc:10...	[more]
ctdp1	4.357e-15	31.48	CTD phosphatase subunit 1 [Source:NCBI gene;Acc:10...	[more]
ctdspl3	6.262e-11	28.03	CTD small phosphatase-like protein 2-B [Source:NCB...	[more]
ctdspl2a	1.031e-8	23.77	CTD small phosphatase-like protein 2-A [Source:NCB...	[more]

BLAST of RNA polymerase II subunit A C-terminal domain phosphatase vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3


Match Name	E-value	Identity	Description
SMESG000016847.1	4.966e-23	38.52	SMESG000016847.1	[more]
SMESG000064687.1	7.038e-21	39.81	SMESG000064687.1	[more]
SMESG000081685.1	8.622e-21	36.72	SMESG000081685.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30028216 ID=SMED30028216|Name=RNA polymerase II subunit A C-terminal domain phosphatase|organism=Schmidtea mediterranea sexual|type=transcript|length=429bp
AAAATACGGGTATGAAAGGTTTTACTTTAAGTTAAGACCTTATTTAAATG
AATTTCTAACAAAGATCTCAGAAATATATGAATTATGTGTGATGAGTTTA
GGAGAGAAATCTTATGTCGAATCTATTGTAAAAATAATAGATCCTGACAA
TAAATTTTTCAAAAATAGAATAATTACTAGAGAAATAATAGGCTATCATA
AAAATAAATTGGCAACTTTAATGAGAGAATTTGGGGAATGTAGTAACATG
ATTGTTGTGATTGATGATCAGGTTAACGTTTGGAATTATAATGATCGGGT
TGTCAAGGTTGAACCATATGAGGTTTTTAAAAATGTTGATAAAAATGTTG
AAATTCAAAAAGAGCTAAAAAATTTAATGTATTGTGATAACTATTTAAAT
AAACTTCAATCAATCTTGTTTAAACTGCA

protein sequence of SMED30028216-orf-1

>SMED30028216-orf-1 ID=SMED30028216-orf-1|Name=SMED30028216-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=142bp
KYGYERFYFKLRPYLNEFLTKISEIYELCVMSLGEKSYVESIVKIIDPDN
KFFKNRIITREIIGYHKNKLATLMREFGECSNMIVVIDDQVNVWNYNDRV
VKVEPYEVFKNVDKNVEIQKELKNLMYCDNYLNKLQSILFKL

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **molecular function**
Term	Definition
GO:0016787	hydrolase activity
GO:0004721	phosphoprotein phosphatase activity
GO:0004722	protein serine/threonine phosphatase activity
GO:0008420	CTD phosphatase activity

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000026	gut
PLANA:0000070	intestinal phagocyte

Vocabulary: **INTERPRO**
Term	Definition
IPR004274	FCP1_dom
IPR023214	HAD_sf

Vocabulary: **cellular component**
Term	Definition
GO:0005634	nucleus
GO:0005829	cytosol
GO:0016591	DNA-directed RNA polymerase II, holoenzyme

Vocabulary: **biological process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter
GO:0070317	negative regulation of G0 to G1 transition
GO:0070940	dephosphorylation of RNA polymerase II C-terminal domain

Main menu

RNA polymerase II subunit A C-terminal domain phosphatase

Zeng et. al., 2018

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 4

Owlery

blazegraph-runner