Nuclear cap-binding protein subunit 2

Overview
NameNuclear cap-binding protein subunit 2
Smed IDSMED30028130
Length (bp)591
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Nuclear cap-binding protein subunit 2 (SMED30028130) t-SNE clustered cells

Violin plots show distribution of expression levels for Nuclear cap-binding protein subunit 2 (SMED30028130) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Nuclear cap-binding protein subunit 2 (SMED30028130) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Nuclear cap-binding protein subunit 2 (SMED30028130) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30028130

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30028130SMESG000060570.1 SmedASXL_019403SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Human
Match: NCBP2 (nuclear cap binding protein subunit 2 [Source:HGNC Symbol;Acc:HGNC:7659])

HSP 1 Score: 161.384 bits (407), Expect = 2.614e-50
Identity = 73/105 (69.52%), Postives = 90/105 (85.71%), Query Frame = 3 
Query:  129 LSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKD 443
            LS YRDQ ++G   EQEK L KS TLY+GNLSF+T EEQI+ELFS++G +K++IMGLD+ K+T CGFCFVEY++R  AE+A+ YINGTRLDDRIIRTDWDAGFK+
Sbjct:   17 LSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKE 121
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Human
Match: NCBP2 (nuclear cap binding protein subunit 2 [Source:HGNC Symbol;Acc:HGNC:7659])

HSP 1 Score: 149.443 bits (376), Expect = 6.291e-46
Identity = 68/97 (70.10%), Postives = 83/97 (85.57%), Query Frame = 3 
Query:  153 YKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKD 443
            Y G   EQEK L KS TLY+GNLSF+T EEQI+ELFS++G +K++IMGLD+ K+T CGFCFVEY++R  AE+A+ YINGTRLDDRIIRTDWDAGFK+
Sbjct:    7 YAGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKE 103
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Human
Match: NCBP2L (nuclear cap binding protein subunit 2 like [Source:HGNC Symbol;Acc:HGNC:31795])

HSP 1 Score: 119.013 bits (297), Expect = 1.033e-33
Identity = 73/137 (53.28%), Postives = 101/137 (73.72%), Query Frame = 3 
Query:   84 MPRDPRLIKKISTGGLSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKDXXXXXXXXXXXXXXDEF 494
            M +D +++ K     LS YRD Q+ G + +QEK L +S TL +GNLSF+T EE+I ELFSR+  ++ + MGLD+ K+T CGFCFVE   R  AE+A+ ++ GT LD+ II TDWD GF++G+Q+GRG++GGQVRDEF
Sbjct:    1 MSKDLKILCKDPALELSCYRDHQFSGRKFQQEKLLKESSTLNMGNLSFYTTEEKIHELFSRS-DIRNIFMGLDKIKKTACGFCFVECHNRADAENAMRFLTGTCLDEWIICTDWDVGFREGQQYGRGKSGGQVRDEF 136
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Human
Match: NCBP2L (nuclear cap binding protein subunit 2 like [Source:HGNC Symbol;Acc:HGNC:31795])

HSP 1 Score: 119.013 bits (297), Expect = 1.033e-33
Identity = 73/137 (53.28%), Postives = 101/137 (73.72%), Query Frame = 3 
Query:   84 MPRDPRLIKKISTGGLSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKDXXXXXXXXXXXXXXDEF 494
            M +D +++ K     LS YRD Q+ G + +QEK L +S TL +GNLSF+T EE+I ELFSR+  ++ + MGLD+ K+T CGFCFVE   R  AE+A+ ++ GT LD+ II TDWD GF++G+Q+GRG++GGQVRDEF
Sbjct:    1 MSKDLKILCKDPALELSCYRDHQFSGRKFQQEKLLKESSTLNMGNLSFYTTEEKIHELFSRS-DIRNIFMGLDKIKKTACGFCFVECHNRADAENAMRFLTGTCLDEWIICTDWDVGFREGQQYGRGKSGGQVRDEF 136
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Human
Match: NCBP2 (nuclear cap binding protein subunit 2 [Source:HGNC Symbol;Acc:HGNC:7659])

HSP 1 Score: 89.7373 bits (221), Expect = 3.605e-23
Identity = 65/86 (75.58%), Postives = 79/86 (91.86%), Query Frame = 3 
Query:  291 MGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKDXXXXXXXXXXXXXXDEFXXXXXXXXXXXXKIVQQK 548
            MGLD+ K+T CGFCFVEY++R  AE+A+ YINGTRLDDRIIRTDWDAGFK+GRQ+GRGR+GGQVRDE+R+DYD+GRGGYGK+ Q +
Sbjct:    1 MGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ 86
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Celegans
Match: ncbp-2 (Nuclear cap-binding protein subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93594])

HSP 1 Score: 152.525 bits (384), Expect = 2.534e-47
Identity = 72/118 (61.02%), Postives = 93/118 (78.81%), Query Frame = 3 
Query:   84 MPRDPRLIKKISTGGLSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGF 437
            M  DPR +       +S+YRDQ+Y+G+  +QE AL  S TLY+GNLS++T+E+Q++ELF RAG V+RVIMGLDR K+TPCGFCFVEY+TRE AE A+  I+ TR+DDR+IR DWDAGF
Sbjct:    1 MVFDPRTLDNPKE--ISAYRDQRYQGTVRDQETALRTSCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELALQNISNTRMDDRVIRADWDAGF 116
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Celegans
Match: ncbp-2 (Nuclear cap-binding protein subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93594])

HSP 1 Score: 152.525 bits (384), Expect = 2.534e-47
Identity = 72/118 (61.02%), Postives = 93/118 (78.81%), Query Frame = 3 
Query:   84 MPRDPRLIKKISTGGLSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGF 437
            M  DPR +       +S+YRDQ+Y+G+  +QE AL  S TLY+GNLS++T+E+Q++ELF RAG V+RVIMGLDR K+TPCGFCFVEY+TRE AE A+  I+ TR+DDR+IR DWDAGF
Sbjct:    1 MVFDPRTLDNPKE--ISAYRDQRYQGTVRDQETALRTSCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELALQNISNTRMDDRVIRADWDAGF 116
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Celegans
Match: ncbp-2 (Nuclear cap-binding protein subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93594])

HSP 1 Score: 82.0333 bits (201), Expect = 1.687e-20
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 3 
Query:  291 MGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGF 437
            MGLDR K+TPCGFCFVEY+TRE AE A+  I+ TR+DDR+IR DWDAGF
Sbjct:    1 MGLDRFKKTPCGFCFVEYYTREDAELALQNISNTRMDDRVIRADWDAGF 49
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Celegans
Match: ncbp-2 (Nuclear cap-binding protein subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93594])

HSP 1 Score: 82.0333 bits (201), Expect = 1.687e-20
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 3 
Query:  291 MGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGF 437
            MGLDR K+TPCGFCFVEY+TRE AE A+  I+ TR+DDR+IR DWDAGF
Sbjct:    1 MGLDRFKKTPCGFCFVEYYTREDAELALQNISNTRMDDRVIRADWDAGF 49
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Celegans
Match: cpf-2 (Cleavage and Polyadenylation Factor [Source:UniProtKB/TrEMBL;Acc:O45577])

HSP 1 Score: 61.6178 bits (148), Expect = 2.410e-11
Identity = 29/78 (37.18%), Postives = 46/78 (58.97%), Query Frame = 3 
Query:  201 TLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAG 434
            ++++GN+S+   E+ I  +FS+AG V  + M  DR    P G+ F+E+   + AE A+  +NG  L  RI+R D  AG
Sbjct:   19 SVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVDSAAG 96
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Fly
Match: Cbp20 (gene:FBgn0022943 transcript:FBtr0083551)

HSP 1 Score: 161.384 bits (407), Expect = 1.102e-50
Identity = 99/146 (67.81%), Postives = 124/146 (84.93%), Query Frame = 3 
Query:  129 LSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKDXXXXXXXXXXXXXXDEFXXXXXXXXXXXXKIVQQKLELTED 566
            LSSYRDQ +KGSR EQE++L  S TLY+GNLSF+T EEQI ELFSR G V+ ++MGLD+ K+TPCGFCFVEY+ R +AE+A+ ++NGTRLDDR+IR DWDAGF +GRQ+GRG+TGGQVRDE+R DYD+GRGGYGK++ QK+    D
Sbjct:    7 LSSYRDQHFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVEYYVRSEAEAAMRFVNGTRLDDRLIRVDWDAGFVEGRQYGRGKTGGQVRDEYRTDYDAGRGGYGKLLSQKIAPNTD 152
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Fly
Match: CstF64 (gene:FBgn0027841 transcript:FBtr0083660)

HSP 1 Score: 55.8398 bits (133), Expect = 4.280e-9
Identity = 30/85 (35.29%), Postives = 51/85 (60.00%), Query Frame = 3 
Query:  174 QEKALL-KSL-TLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTD 422
            QE++++ KS+ ++++GN+ +   EE++ E+FS  G V  + +  DR    P GF F EY  +E A SA+  +NG  +  R +R D
Sbjct:    6 QEQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEIGGRTLRVD 90
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Fly
Match: Spx (gene:FBgn0015818 transcript:FBtr0070894)

HSP 1 Score: 50.447 bits (119), Expect = 2.435e-7
Identity = 26/74 (35.14%), Postives = 39/74 (52.70%), Query Frame = 3 
Query:  201 TLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTD 422
            T+Y G L     E  +WELF +AG V  V M  DR  +   G+ FVE+ + E A+  +  +N  +L  + IR +
Sbjct:   14 TIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVN 87
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Fly
Match: trv (gene:FBgn0085391 transcript:FBtr0344217)

HSP 1 Score: 48.521 bits (114), Expect = 1.201e-6
Identity = 27/95 (28.42%), Postives = 46/95 (48.42%), Query Frame = 3 
Query:  141 RDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDW 425
            +D +      E    L K   +++G+LS     +Q+ E F+  G++    +  D       G+ FV +  + +AESA+  +NG  L  R IRT+W
Sbjct:  293 QDMEDSDEEMEYMPPLHKQFHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAMNGQWLGSRSIRTNW 387
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Fly
Match: tsu (gene:FBgn0033378 transcript:FBtr0088567)

HSP 1 Score: 46.9802 bits (110), Expect = 1.298e-6
Identity = 23/74 (31.08%), Postives = 41/74 (55.41%), Query Frame = 3 
Query:  204 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDW 425
            L++ ++    +E++I E F   G++K + + LDR      G+  VEY T +QA +A   +NG  +  + I+ DW
Sbjct:   75 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Zebrafish
Match: ncbp2 (nuclear cap binding protein subunit 2 [Source:NCBI gene;Acc:192325])

HSP 1 Score: 157.532 bits (397), Expect = 5.877e-49
Identity = 96/139 (69.06%), Postives = 122/139 (87.77%), Query Frame = 3 
Query:  129 LSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKDXXXXXXXXXXXXXXDEFXXXXXXXXXXXXKIVQQ 545
            +S YRDQ +KG+R EQEK L +S TLY+GNLSF+T EEQ+ ELF++ G VKR+I+GLD+ K+T CGFCFVEY+TR  AE+A+ ++NGTRLDDRIIRTDWDAGFK+GRQ+GRG++GGQVRDE+R+DYD  RGGYGK+VQ+
Sbjct:   16 VSQYRDQHFKGNRYEQEKLLKQSATLYVGNLSFYTTEEQVHELFAKCGDVKRIIIGLDKIKKTACGFCFVEYYTRADAENAMRFVNGTRLDDRIIRTDWDAGFKEGRQYGRGKSGGQVRDEYRQDYDPARGGYGKMVQK 154
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Zebrafish
Match: cirbpb (cold inducible RNA binding protein b [Source:ZFIN;Acc:ZDB-GENE-030131-5841])

HSP 1 Score: 55.0694 bits (131), Expect = 2.858e-9
Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 3 
Query:  204 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTD 422
            L+IG LS+ T E+ + E FS+ G + +V +  DR      GF FV +   E A+ A+  +NG ++D R+IR D
Sbjct:    7 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGKQVDGRMIRVD 79
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Zebrafish
Match: cirbpb (cold inducible RNA binding protein b [Source:ZFIN;Acc:ZDB-GENE-030131-5841])

HSP 1 Score: 54.6842 bits (130), Expect = 6.080e-9
Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 3 
Query:  204 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTD 422
            L+IG LS+ T E+ + E FS+ G + +V +  DR      GF FV +   E A+ A+  +NG ++D R+IR D
Sbjct:   24 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGKQVDGRMIRVD 96
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Zebrafish
Match: cirbpb (cold inducible RNA binding protein b [Source:ZFIN;Acc:ZDB-GENE-030131-5841])

HSP 1 Score: 54.6842 bits (130), Expect = 6.250e-9
Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 3 
Query:  204 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTD 422
            L+IG LS+ T E+ + E FS+ G + +V +  DR      GF FV +   E A+ A+  +NG ++D R+IR D
Sbjct:   25 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGKQVDGRMIRVD 97
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Zebrafish
Match: eif3g (eukaryotic translation initiation factor 3, subunit G [Source:NCBI gene;Acc:393974])

HSP 1 Score: 52.373 bits (124), Expect = 6.863e-8
Identity = 25/77 (32.47%), Postives = 40/77 (51.95%), Query Frame = 3 
Query:  195 SLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDW 425
            + T+ + NLS  TRE  + ELF   G + R+ +  D+N     GF F+ +  RE A  A+  ++G   D  I+  +W
Sbjct:  211 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKNTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 287
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Xenopus
Match: nprl3 (NPR3-like, GATOR1 complex subunit [Source:Xenbase;Acc:XB-GENE-5818915])

HSP 1 Score: 157.147 bits (396), Expect = 1.056e-48
Identity = 98/138 (71.01%), Postives = 121/138 (87.68%), Query Frame = 3 
Query:  129 LSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKDXXXXXXXXXXXXXXDEFXXXXXXXXXXXXKIVQ 542
            LS YRDQ ++G+R +QE  L  S TLY+GNLSF+T EEQI ELFS++G VK+++MGLD+ K+T CGFCFVEY+TR  AE A+ +INGTRLDDRIIRTDWDAGFK+GRQ+GRG++GGQVRDE+R+DYD+GRGGYGKIVQ
Sbjct:   14 LSQYRDQHFRGNRSDQECLLKHSCTLYVGNLSFYTTEEQIHELFSKSGDVKKIVMGLDKIKKTACGFCFVEYYTRTDAEQAMRFINGTRLDDRIIRTDWDAGFKEGRQYGRGKSGGQVRDEYRQDYDAGRGGYGKIVQ 151
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Xenopus
Match: nprl3 (NPR3-like, GATOR1 complex subunit [Source:Xenbase;Acc:XB-GENE-5818915])

HSP 1 Score: 156.377 bits (394), Expect = 1.924e-48
Identity = 98/140 (70.00%), Postives = 121/140 (86.43%), Query Frame = 3 
Query:  129 LSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKDXXXXXXXXXXXXXXDEFXXXXXXXXXXXXKIVQQK 548
            LS YRDQ ++G+R +QE  L  S TLY+GNLSF+T EEQI ELFS++G VK+++MGLD+ K+T CGFCFVEY+TR  AE A+ +INGTRLDDRIIRTDWDAGFK+GRQ+GRG++GGQVRDE+R+DYD+GRGGYGKIV  K
Sbjct:   14 LSQYRDQHFRGNRSDQECLLKHSCTLYVGNLSFYTTEEQIHELFSKSGDVKKIVMGLDKIKKTACGFCFVEYYTRTDAEQAMRFINGTRLDDRIIRTDWDAGFKEGRQYGRGKSGGQVRDEYRQDYDAGRGGYGKIVHPK 153
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Xenopus
Match: nprl3 (NPR3-like, GATOR1 complex subunit [Source:Xenbase;Acc:XB-GENE-5818915])

HSP 1 Score: 143.28 bits (360), Expect = 1.781e-43
Identity = 94/137 (68.61%), Postives = 117/137 (85.40%), Query Frame = 3 
Query:  132 SSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKDXXXXXXXXXXXXXXDEFXXXXXXXXXXXXKIVQ 542
            SS   + + G+R +QE  L  S TLY+GNLSF+T EEQI ELFS++G VK+++MGLD+ K+T CGFCFVEY+TR  AE A+ +INGTRLDDRIIRTDWDAGFK+GRQ+GRG++GGQVRDE+R+DYD+GRGGYGKIVQ
Sbjct:    3 SSSPQRSWLGNRSDQECLLKHSCTLYVGNLSFYTTEEQIHELFSKSGDVKKIVMGLDKIKKTACGFCFVEYYTRTDAEQAMRFINGTRLDDRIIRTDWDAGFKEGRQYGRGKSGGQVRDEYRQDYDAGRGGYGKIVQ 139
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Xenopus
Match: cirbp (cold inducible RNA binding protein [Source:NCBI gene;Acc:549982])

HSP 1 Score: 56.9954 bits (136), Expect = 7.315e-10
Identity = 28/73 (38.36%), Postives = 44/73 (60.27%), Query Frame = 3 
Query:  204 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTD 422
            L++G L+F T EE + ++FS+ G+V  V++  DR  +   GF FV +   E A+ A+  +NG  +D R IR D
Sbjct:    8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVD 80
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Xenopus
Match: cirbp (cold inducible RNA binding protein [Source:NCBI gene;Acc:549982])

HSP 1 Score: 56.6102 bits (135), Expect = 9.672e-10
Identity = 28/73 (38.36%), Postives = 44/73 (60.27%), Query Frame = 3 
Query:  204 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTD 422
            L++G L+F T EE + ++FS+ G+V  V++  DR  +   GF FV +   E A+ A+  +NG  +D R IR D
Sbjct:   20 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVD 92
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Mouse
Match: Ncbp2 (nuclear cap binding protein subunit 2 [Source:MGI Symbol;Acc:MGI:1915342])

HSP 1 Score: 161.384 bits (407), Expect = 1.895e-50
Identity = 73/105 (69.52%), Postives = 90/105 (85.71%), Query Frame = 3 
Query:  129 LSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKD 443
            LS YRDQ ++G   EQEK L KS TLY+GNLSF+T EEQI+ELFS++G +K++IMGLD+ K+T CGFCFVEY++R  AE+A+ YINGTRLDDRIIRTDWDAGFK+
Sbjct:   17 LSEYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKE 121
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Mouse
Match: Ncbp2 (nuclear cap binding protein subunit 2 [Source:MGI Symbol;Acc:MGI:1915342])

HSP 1 Score: 160.614 bits (405), Expect = 3.917e-50
Identity = 73/105 (69.52%), Postives = 90/105 (85.71%), Query Frame = 3 
Query:  129 LSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKD 443
            LS YRDQ ++G   EQEK L KS TLY+GNLSF+T EEQI+ELFS++G +K++IMGLD+ K+T CGFCFVEY++R  AE+A+ YINGTRLDDRIIRTDWDAGFK+
Sbjct:   17 LSEYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKE 121
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Mouse
Match: Cirbp (cold inducible RNA binding protein [Source:MGI Symbol;Acc:MGI:893588])

HSP 1 Score: 55.0694 bits (131), Expect = 7.553e-10
Identity = 26/73 (35.62%), Postives = 44/73 (60.27%), Query Frame = 3 
Query:  204 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTD 422
            L++G LSF T E+ + ++FS+ G++  V++  DR  +   GF FV +   + A+ A+  +NG  +D R IR D
Sbjct:    8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Mouse
Match: Cirbp (cold inducible RNA binding protein [Source:MGI Symbol;Acc:MGI:893588])

HSP 1 Score: 54.299 bits (129), Expect = 4.346e-9
Identity = 26/73 (35.62%), Postives = 44/73 (60.27%), Query Frame = 3 
Query:  204 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTD 422
            L++G LSF T E+ + ++FS+ G++  V++  DR  +   GF FV +   + A+ A+  +NG  +D R IR D
Sbjct:    8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Mouse
Match: Cirbp (cold inducible RNA binding protein [Source:MGI Symbol;Acc:MGI:893588])

HSP 1 Score: 54.299 bits (129), Expect = 4.616e-9
Identity = 26/73 (35.62%), Postives = 44/73 (60.27%), Query Frame = 3 
Query:  204 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTD 422
            L++G LSF T E+ + ++FS+ G++  V++  DR  +   GF FV +   + A+ A+  +NG  +D R IR D
Sbjct:    8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. UniProt/SwissProt
Match: sp|B7P877|NCBP2_IXOSC (Nuclear cap-binding protein subunit 2 OS=Ixodes scapularis OX=6945 GN=Cbp20 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.344e-52
Identity = 76/103 (73.79%), Postives = 90/103 (87.38%), Query Frame = 3 
Query:  129 LSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGF 437
            LSSYRDQ +KGSR EQE+ L  S TLY+GN+SF+T EEQI+ELFS+ G VK+VIMGLDR  +TPCGFCFVEY+TRE AE+A+ Y+NGT+LDDRIIRTDWDAGF
Sbjct:    5 LSSYRDQHFKGSRSEQERLLRLSTTLYVGNMSFYTTEEQIYELFSKCGDVKKVIMGLDRFHKTPCGFCFVEYYTREDAENAIRYVNGTKLDDRIIRTDWDAGF 107
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. UniProt/SwissProt
Match: sp|Q1HE01|NCBP2_BOMMO (Nuclear cap-binding protein subunit 2 OS=Bombyx mori OX=7091 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.302e-51
Identity = 103/141 (73.05%), Postives = 122/141 (86.52%), Query Frame = 3 
Query:  129 LSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKDXXXXXXXXXXXXXXDEFXXXXXXXXXXXXKIVQQKL 551
            +SSYRDQ +KGSR EQEK L  S TLY+GNLSF+T EEQI+EL+SR G ++RVIMGLD+ K+TPCGFCFVEY+ RE AE+ + YINGTRLDDRIIR DWDAGF +GRQ+GRG+TGGQVRDE+R DYD GRGGYGKI+ QK+
Sbjct:    7 ISSYRDQHFKGSRSEQEKLLKASSTLYMGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQVRDEYRTDYDGGRGGYGKIIAQKI 147
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. UniProt/SwissProt
Match: sp|B4NB54|NCBP2_DROWI (Nuclear cap-binding protein subunit 2 OS=Drosophila willistoni OX=7260 GN=Cbp20 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.348e-51
Identity = 101/146 (69.18%), Postives = 126/146 (86.30%), Query Frame = 3 
Query:  129 LSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKDXXXXXXXXXXXXXXDEFXXXXXXXXXXXXKIVQQKLELTED 566
            LSSYRDQ +KGSR EQE++L +S TLY+GNLSF+T EEQI ELFSR G V+ ++MGLD+ K+TPCGFCFVEY+TR +AESA+ ++NGTRLDDR+IR DWDAGF +GRQ+GRG+TGGQVRDE+R DYD+GRGGYGK++ QK+    D
Sbjct:    7 LSSYRDQHFKGSRSEQERSLKESCTLYVGNLSFYTTEEQIHELFSRCGDVRLIVMGLDKYKKTPCGFCFVEYYTRSEAESAMRFVNGTRLDDRLIRVDWDAGFIEGRQYGRGKTGGQVRDEYRTDYDAGRGGYGKLLSQKIAPNTD 152
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. UniProt/SwissProt
Match: sp|B3LYP1|NCBP2_DROAN (Nuclear cap-binding protein subunit 2 OS=Drosophila ananassae OX=7217 GN=Cbp20 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.153e-50
Identity = 100/146 (68.49%), Postives = 125/146 (85.62%), Query Frame = 3 
Query:  129 LSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKDXXXXXXXXXXXXXXDEFXXXXXXXXXXXXKIVQQKLELTED 566
            LSSYRDQ +KGSR EQE++L  S TLY+GNLSF+T EEQI ELFSR G V+ ++MGLD+ K+TPCGFCFVEY+TR +AE+A+ ++NGTRLDDR+IR DWDAGF +GRQ+GRG+TGGQVRDE+R DYD+GRGGYGK++ QK+    D
Sbjct:    7 LSSYRDQHFKGSRSEQERSLRDSTTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVEYYTRAEAEAAMRFVNGTRLDDRLIRVDWDAGFIEGRQYGRGKTGGQVRDEYRTDYDAGRGGYGKLLSQKIAPNTD 152
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. UniProt/SwissProt
Match: sp|B4LZ88|NCB2B_DROVI (Nuclear cap-binding protein subunit 2B OS=Drosophila virilis OX=7244 GN=Cbp20-B PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.427e-50
Identity = 100/146 (68.49%), Postives = 125/146 (85.62%), Query Frame = 3 
Query:  129 LSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKDXXXXXXXXXXXXXXDEFXXXXXXXXXXXXKIVQQKLELTED 566
            LSSYRDQ +KGSR EQE++L  S TLY+GNLSF+T EEQI ELFSR G V+ ++MGLD+ K+TPCGFCFVEY+TR +AE+A+ ++NGTRLDDR+IR DWDAGF +GRQ+GRG+TGGQVRDE+R DYD+GRGGYGK++ QK+    D
Sbjct:    7 LSSYRDQHFKGSRSEQERSLRDSTTLYVGNLSFYTTEEQIHELFSRCGDVRIIVMGLDKYKKTPCGFCFVEYYTRAEAEAAMRFVNGTRLDDRLIRVDWDAGFVEGRQYGRGKTGGQVRDEYRTDYDAGRGGYGKLLSQKIAPNTD 152
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. TrEMBL
Match: R7TRZ9 (Nuclear cap-binding protein subunit 2 OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_149941 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.969e-53
Identity = 107/152 (70.39%), Postives = 134/152 (88.16%), Query Frame = 3 
Query:  102 LIKKISTGG--LSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKDXXXXXXXXXXXXXXDEFXXXXXXXXXXXXKIVQQKL 551
            + K+ ++G   LS+YRDQ ++G+R EQEKALL S TLYIGNLSFFT EEQI ELFSRAG VKR+IMGLD+ ++TPCGFCFVEY+TR  AE A+ ++NGTRLDDRI+RTDWDAGFK+GRQ+GRG++GGQVRDE+R D+D+GRGGYGK++QQK+
Sbjct:    1 MSKRTNSGAAALSAYRDQHFRGNRIEQEKALLTSTTLYIGNLSFFTAEEQIHELFSRAGDVKRIIMGLDKYRKTPCGFCFVEYYTRSDAEMAMRFVNGTRLDDRIVRTDWDAGFKEGRQYGRGKSGGQVRDEYRTDFDTGRGGYGKMIQQKI 152
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. TrEMBL
Match: A0A433TSG6 (Nuclear cap-binding protein subunit 2 OS=Elysia chlorotica OX=188477 GN=EGW08_007722 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 3.623e-53
Identity = 107/148 (72.30%), Postives = 127/148 (85.81%), Query Frame = 3 
Query:  129 LSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKDXXXXXXXXXXXXXXDEFXXXXXXXXXXXXKIVQQKLELTEDVA 572
            LS YRDQ ++G+R EQEK LL+S TLYIGNLSF+T E QI ELFSRAG VKR+IMGLD+ +RTPCGFCFVEY+ RE AESA+ YINGTRLDDRIIRTDWDAGFK+GRQ+GRG+TGGQVRDE+R D+D  RGGYGK++  K+  T D++
Sbjct:   13 LSQYRDQHFRGNRAEQEKRLLESTTLYIGNLSFYTSEGQIHELFSRAGDVKRIIMGLDKVQRTPCGFCFVEYYVREDAESAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGKTGGQVRDEYRTDFDDARGGYGKMLANKIRRTSDLS 160
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. TrEMBL
Match: A0A2T7NAV6 (Nuclear cap-binding protein subunit 2 OS=Pomacea canaliculata OX=400727 GN=C0Q70_20855 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.615e-52
Identity = 109/141 (77.30%), Postives = 125/141 (88.65%), Query Frame = 3 
Query:  129 LSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKDXXXXXXXXXXXXXXDEFXXXXXXXXXXXXKIVQQKL 551
            LS YRDQ Y+GSR +QEKALLKS TLYIGNLSFFT EEQI+ELFSRAG VKR+IMGLD+  +TPCGFCFVE++ R  A +A+ YINGTRLDDRIIRTDWDAGFK+GRQFGRG++GGQVRDE+R DYD GRGGYGK+VQ K+
Sbjct:   11 LSQYRDQHYRGSRQDQEKALLKSTTLYIGNLSFFTSEEQIFELFSRAGDVKRIIMGLDKVSKTPCGFCFVEFYARNDALNAMRYINGTRLDDRIIRTDWDAGFKEGRQFGRGKSGGQVRDEYRTDYDEGRGGYGKLVQSKI 151
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. TrEMBL
Match: A0A2C9JRG4 (Nuclear cap-binding protein subunit 2 OS=Biomphalaria glabrata OX=6526 GN=106064911 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.993e-52
Identity = 105/157 (66.88%), Postives = 132/157 (84.08%), Query Frame = 3 
Query:  108 KKISTG--GLSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKDXXXXXXXXXXXXXXDEFXXXXXXXXXXXXKIVQQKLELTEDVA 572
            +K+ +G   LS YRDQ ++G+RGEQEK LL S TLY+GNLSFFT E QI+ELFSRAG VK++IMGLD+ ++TPCGFCFVEY+TR  AE+ + Y+NGTRLDDRIIRTDWDAGFK+GRQ+GRG+TGGQVRDE+R D+D  RGGYGK++  K+  T D++
Sbjct:    4 RKLPSGSVALSQYRDQHFRGNRGEQEKFLLTSTTLYVGNLSFFTSEAQIYELFSRAGDVKKIIMGLDKVQKTPCGFCFVEYYTRPDAENCMRYVNGTRLDDRIIRTDWDAGFKEGRQYGRGKTGGQVRDEYRTDFDEARGGYGKMLASKIRRTSDIS 160
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. TrEMBL
Match: A0A067RBF0 (Nuclear cap-binding protein subunit 2 OS=Zootermopsis nevadensis OX=136037 GN=L798_08386 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 5.873e-52
Identity = 109/151 (72.19%), Postives = 131/151 (86.75%), Query Frame = 3 
Query:  129 LSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKDXXXXXXXXXXXXXXDEFXXXXXXXXXXXXKIVQQKLEL-TEDVA*F 578
            LSSYRDQ +KGSRGEQE+ L  S T+YIGNLSF+T EEQI+ELFS+ G VKR+IMGLD+ K+TPCGFCFVEY++R  AE+++ YINGTRLDDRIIRTDWDAGF +GRQ+GRG+TGGQVRDE+R D+D GRGGYGKIVQQK+    +DV+ F
Sbjct:   11 LSSYRDQHFKGSRGEQERLLRTSTTMYIGNLSFYTTEEQIYELFSKCGDVKRIIMGLDKFKKTPCGFCFVEYYSRADAENSMRYINGTRLDDRIIRTDWDAGFIEGRQYGRGKTGGQVRDEYRTDFDGGRGGYGKIVQQKVSTPVQDVSVF 161
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Cavefish
Match: ncbp2 (nuclear cap binding protein subunit 2 [Source:NCBI gene;Acc:192325])

HSP 1 Score: 157.532 bits (397), Expect = 5.484e-49
Identity = 71/105 (67.62%), Postives = 90/105 (85.71%), Query Frame = 3 
Query:  129 LSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKD 443
            +S YRDQ +KG+R EQEK L +S TLY+GNLSF+T EEQ++ELFS++G VKR+++GLD+ K+T CGFCFVEY+ R  AE A+ +INGTRLDDRIIRTDWDAGFK+
Sbjct:   20 VSQYRDQHFKGNRYEQEKLLKQSNTLYVGNLSFYTTEEQVYELFSKSGDVKRIVIGLDKVKKTACGFCFVEYYIRAGAEHAMRFINGTRLDDRIIRTDWDAGFKE 124
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Cavefish
Match: cirbpb (cold inducible RNA binding protein b [Source:ZFIN;Acc:ZDB-GENE-030131-5841])

HSP 1 Score: 51.6026 bits (122), Expect = 5.659e-8
Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 3 
Query:  204 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTD 422
            L+IG LS+ T E+ + + FS+ G + +V +  DR      GF FV +   + A+ A+  +NG  +D R+IR D
Sbjct:   46 LFIGGLSYDTTEQSLEDAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPDDAKDAMVAMNGKSIDGRMIRVD 118
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Cavefish
Match: cirbpb (cold inducible RNA binding protein b [Source:ZFIN;Acc:ZDB-GENE-030131-5841])

HSP 1 Score: 51.6026 bits (122), Expect = 5.659e-8
Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 3 
Query:  204 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTD 422
            L+IG LS+ T E+ + + FS+ G + +V +  DR      GF FV +   + A+ A+  +NG  +D R+IR D
Sbjct:   46 LFIGGLSYDTTEQSLEDAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPDDAKDAMVAMNGKSIDGRMIRVD 118
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Cavefish
Match: cirbpb (cold inducible RNA binding protein b [Source:ZFIN;Acc:ZDB-GENE-030131-5841])

HSP 1 Score: 51.6026 bits (122), Expect = 5.701e-8
Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 3 
Query:  204 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTD 422
            L+IG LS+ T E+ + + FS+ G + +V +  DR      GF FV +   + A+ A+  +NG  +D R+IR D
Sbjct:   46 LFIGGLSYDTTEQSLEDAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPDDAKDAMVAMNGKSIDGRMIRVD 118
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Cavefish
Match: eif3g (eukaryotic translation initiation factor 3 subunit G [Source:NCBI gene;Acc:111191904])

HSP 1 Score: 52.373 bits (124), Expect = 5.872e-8
Identity = 25/77 (32.47%), Postives = 40/77 (51.95%), Query Frame = 3 
Query:  195 SLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDW 425
            + T+ + NLS  TRE  + ELF   G + R+ +  D+N     GF F+ +  RE A  A+  ++G   D  I+  +W
Sbjct:  211 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKNTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 287
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008236.1 (pep scaffold:Pmarinus_7.0:GL481499:15174:17509:-1 gene:ENSPMAG00000007450.1 transcript:ENSPMAT00000008236.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 159.073 bits (401), Expect = 2.946e-50
Identity = 76/118 (64.41%), Postives = 94/118 (79.66%), Query Frame = 3 
Query:   96 PRL--IKKISTGGLSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKD 443
            PRL  ++  S   ++ YRDQ +KGSR EQE+ L +S TLY+GNLSF+T EEQI ELF + G +KR+IMGLD+ KRT CGFCFVEY+ R  AE+A+ Y+NGTRLDDRIIRTDWDAGFK+
Sbjct:    7 PRLATLESDSYAEVTQYRDQHFKGSRTEQEELLRRSCTLYVGNLSFYTTEEQIHELFVKCGDIKRIIMGLDKVKRTSCGFCFVEYYIRSDAENALRYVNGTRLDDRIIRTDWDAGFKE 124
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007216.1 (pep scaffold:Pmarinus_7.0:GL497490:2135:3082:1 gene:ENSPMAG00000006518.1 transcript:ENSPMAT00000007216.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 102.064 bits (253), Expect = 3.099e-27
Identity = 56/116 (48.28%), Postives = 71/116 (61.21%), Query Frame = 3 
Query:   93 DPRLIKKISTGGLSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFK 440
            DP+ I      GLS     QYK       + L  S TLY+GNLSF+T E Q+ E F   G+V  +IMGL+R K+ PCGFCFVEY TRE+A  A+  +N + +D R IR DWD GF+
Sbjct:    9 DPKSIYFDKRSGLSQ---DQYK-------EKLSNSTTLYVGNLSFYTSETQLLEFFQLCGEVVNLIMGLNREKKQPCGFCFVEYATREEAALAIECLNLSVVDGRQIRIDWDPGFE 114
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Sea Lamprey
Match: sf3b4 (splicing factor 3b, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-020419-22])

HSP 1 Score: 50.0618 bits (118), Expect = 7.827e-8
Identity = 26/74 (35.14%), Postives = 39/74 (52.70%), Query Frame = 3 
Query:  201 TLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTD 422
            T+Y+G L     E  +WELF +AG V    M  DR  +   G+ FVE+   E A+ A+  +N  +L  + IR +
Sbjct:   14 TVYVGGLDDKVSEALLWELFLQAGPVVNTHMPKDRITQQHQGYGFVEFLGEEDADYAIKIMNMIKLYGKPIRVN 87
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Sea Lamprey
Match: tra2b (transformer 2 beta homolog [Source:ZFIN;Acc:ZDB-GENE-040426-1094])

HSP 1 Score: 48.9062 bits (115), Expect = 1.497e-7
Identity = 31/93 (33.33%), Postives = 46/93 (49.46%), Query Frame = 3 
Query:  147 QQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDW 425
            ++++G RG  E     +  L +  LS +T E  + E+F R G V  V +  D+    P GF FV     E ++ A   +NG  LD R IR D+
Sbjct:   93 RRHQGDRGNPEP----NTCLGVFGLSLYTTEHDLREVFGRYGPVADVNVVYDQQSGRPRGFAFVYMQNMEDSKEAKERVNGMELDGRNIRVDF 181
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Sea Lamprey
Match: rbmx (RNA binding motif protein X-linked [Source:NCBI gene;Acc:321860])

HSP 1 Score: 46.595 bits (109), Expect = 1.230e-6
Identity = 26/73 (35.62%), Postives = 39/73 (53.42%), Query Frame = 3 
Query:  204 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTD 422
            L+IG LS  T E  +  +FS+ G+V  V++  DR      GF FV +   + A+ A   +NG  LD R I+ +
Sbjct:    9 LFIGGLSTDTNENALETIFSKYGRVAEVLIMKDRETNRSRGFAFVTFANPDDAKGAERDMNGKPLDGRNIKVE 81
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Yeast
Match: CBC2 (Small subunit of the heterodimeric cap binding complex with Sto1p; interacts with Npl3p, possibly to package mRNA for export from the nucleus; may have a role in telomere maintenance; contains an RNA-binding motif [Source:SGD;Acc:S000006099])

HSP 1 Score: 108.227 bits (269), Expect = 3.728e-30
Identity = 51/97 (52.58%), Postives = 72/97 (74.23%), Query Frame = 3 
Query:  156 KGSRGEQE-KALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKD 443
            +   G QE +  +KS T+Y+GNLSF+T EEQI+ELFS+ G +KR+IMGLDR K TPCGFCF+ Y   ++A +A+ Y++ T+LD++ I  D D GF+D
Sbjct:   31 RNPNGLQELRESMKSSTIYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFCFIIYSCPDEALNALKYLSDTKLDEKTITIDLDPGFED 127
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Yeast
Match: NSR1 (Nucleolar protein that binds nuclear localization sequences; required for pre-rRNA processing and ribosome biogenesis; binds to single stranded telomeric DNA and mRNA; methylated by Hmt1p; interaction with Top1p and nucleolar localization are negatively regulated by polyphosphorylation [Source:SGD;Acc:S000003391])

HSP 1 Score: 55.8398 bits (133), Expect = 6.207e-10
Identity = 27/79 (34.18%), Postives = 46/79 (58.23%), Query Frame = 3 
Query:  195 SLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDA 431
            S TL++GNLSF    + I+ELF++ G+V  V +        P GF +V++   E A+ A+  + G  +D+R +R D+ +
Sbjct:  266 SDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSS 344
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Yeast
Match: PUB1 (Poly (A)+ RNA-binding protein; abundant mRNP-component protein that binds mRNA and is required for stability of many mRNAs; component of glucose deprivation induced stress granules, involved in P-body-dependent granule assembly; implicated in regulation of translation; carries Q/N-rich domain at C- terminus, identified as candidate prion; human homolog Tia1 is critical for normal synaptic plasticity; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000004961])

HSP 1 Score: 50.0618 bits (118), Expect = 4.657e-8
Identity = 27/122 (22.13%), Postives = 59/122 (48.36%), Query Frame = 3 
Query:   93 DPRLIKKISTGGLSSYRDQQYKGSRGEQEKALLKSLT-----------LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDW 425
            DP   + ++  G S    +Q + ++GE + +++ +             LY+GNL     E+ + + F   G +  + + +D+N +    + FVEY     A  A+  +NG ++++ I++ +W
Sbjct:   33 DPSSEQSVAVEGNS----EQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKN-VNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW 149
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Yeast
Match: HSH49 (U2-snRNP associated splicing factor; similar to the mammalian splicing factor SAP49; proposed to function as a U2-snRNP assembly factor along with Hsh155p and binding partner Cus1p; contains two RNA recognition motifs (RRM) [Source:SGD;Acc:S000005846])

HSP 1 Score: 48.1358 bits (113), Expect = 1.485e-7
Identity = 24/74 (32.43%), Postives = 44/74 (59.46%), Query Frame = 3 
Query:  201 TLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGT-RLDDRIIRT 419
            T+Y+GN+     +EQ++ELF +   V R+    D+  +   G+ F+E++ +  A+ A+  +N T RL DR+I+ 
Sbjct:   10 TVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKIMNNTVRLYDRLIKV 83
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Yeast
Match: PAB1 (Poly(A) binding protein; part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G; stimulates, but is not required for the deadenylation activity of the Pan2p-Pan3p poly(A)-ribonuclease complex [Source:SGD;Acc:S000000967])

HSP 1 Score: 46.2098 bits (108), Expect = 1.092e-6
Identity = 24/94 (25.53%), Postives = 44/94 (46.81%), Query Frame = 3 
Query:  144 DQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDW 425
            DQ+   +  E +     S +LY+G+L     E  ++++FS  G V  + +  D   +T  G+ +V +   E    A+  +N T +  R+ R  W
Sbjct:   20 DQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMW 113
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Nematostella
Match: EDO39952 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S8K1])

HSP 1 Score: 154.066 bits (388), Expect = 4.175e-48
Identity = 69/105 (65.71%), Postives = 90/105 (85.71%), Query Frame = 3 
Query:  129 LSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKD 443
            LS+YRDQ ++G+R E E  L  S TLY+GNLSF+T E+QI+ELF RAG++K++IMGLD+ ++TPCGFCFVEY+TR  AE+A+ YINGTRLD RIIRTD+DAGF++
Sbjct:    4 LSAYRDQHFRGTRQELESRLETSSTLYVGNLSFYTSEQQIYELFGRAGELKKIIMGLDKVRKTPCGFCFVEYYTRPDAENAMRYINGTRLDQRIIRTDYDAGFEE 108
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Nematostella
Match: EDO30149 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T1M0])

HSP 1 Score: 50.8322 bits (120), Expect = 5.022e-9
Identity = 26/74 (35.14%), Postives = 43/74 (58.11%), Query Frame = 3 
Query:  204 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDW 425
            L++ N+    +E+ I ELFS  G++K + + LDR      G+  VEY T ++A+SA+  +NG  +  + I  DW
Sbjct:    7 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEMLGQNISVDW 80
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Nematostella
Match: EDO47928 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RKL6])

HSP 1 Score: 50.8322 bits (120), Expect = 5.215e-9
Identity = 26/74 (35.14%), Postives = 43/74 (58.11%), Query Frame = 3 
Query:  204 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDW 425
            L++ N+    +E+ I ELFS  G++K + + LDR      G+  VEY T ++A+SA+  +NG  +  + I  DW
Sbjct:    7 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEMLGQNISVDW 80
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Nematostella
Match: EDO45702 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RS89])

HSP 1 Score: 51.2174 bits (121), Expect = 8.137e-9
Identity = 26/74 (35.14%), Postives = 43/74 (58.11%), Query Frame = 3 
Query:  204 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDW 425
            L++ N+    +E+ I ELFS  G++K + + LDR      G+  VEY T ++A+SA+  +NG  +  + I  DW
Sbjct:   40 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEMLGQNISVDW 113
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Nematostella
Match: EDO44931 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUM9])

HSP 1 Score: 49.2914 bits (116), Expect = 1.721e-8
Identity = 22/66 (33.33%), Postives = 39/66 (59.09%), Query Frame = 3 
Query:  204 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLD 401
            LY+ +L+    ++ + E+FS  G+VK V +  DR      GF +VEY   E+ E A+ +++G ++D
Sbjct:    3 LYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDGGQID 68
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Medaka
Match: ncbp2 (nuclear cap binding protein subunit 2 [Source:NCBI gene;Acc:101159496])

HSP 1 Score: 157.147 bits (396), Expect = 7.449e-49
Identity = 96/140 (68.57%), Postives = 122/140 (87.14%), Query Frame = 3 
Query:  129 LSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKDXXXXXXXXXXXXXXDEFXXXXXXXXXXXXKIVQQK 548
            +S YRDQ +KG+R EQEK L +S TLY+GNLSF+T EEQ+ ELF++ G VKR+I+GLD+ K+T CGFCFVEY+TR  AE+A+ ++NGTRLDDRIIRTDWDAGFK+GRQ+GRG++GGQVRDE+R+DYD  RGGYGK+ QQ+
Sbjct:   16 VSQYRDQHFKGNRYEQEKLLKQSNTLYVGNLSFYTTEEQVHELFAKCGDVKRIIIGLDKVKKTACGFCFVEYYTRGDAENAMRFVNGTRLDDRIIRTDWDAGFKEGRQYGRGKSGGQVRDEYRQDYDPARGGYGKLAQQQ 155
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Medaka
Match: cirbpa (cold inducible RNA binding protein [Source:NCBI gene;Acc:101165004])

HSP 1 Score: 52.7582 bits (125), Expect = 1.203e-8
Identity = 28/73 (38.36%), Postives = 41/73 (56.16%), Query Frame = 3 
Query:  204 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTD 422
            L+IG LSF T E+ +   F + G +++V +  D+      GF FV+Y   E A+ A+  +NG  LD R IR D
Sbjct:    6 LFIGGLSFETNEDSLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNVEDAKDALDAMNGKTLDGRAIRVD 78
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Medaka
Match: cirbpa (cold inducible RNA binding protein [Source:NCBI gene;Acc:101165004])

HSP 1 Score: 52.7582 bits (125), Expect = 1.610e-8
Identity = 28/73 (38.36%), Postives = 41/73 (56.16%), Query Frame = 3 
Query:  204 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTD 422
            L+IG LSF T E+ +   F + G +++V +  D+      GF FV+Y   E A+ A+  +NG  LD R IR D
Sbjct:    7 LFIGGLSFETNEDSLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNVEDAKDALDAMNGKTLDGRAIRVD 79
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Medaka
Match: ENSORLT00000003149.2 (nucleolysin TIA-1 [Source:NCBI gene;Acc:101155125])

HSP 1 Score: 52.373 bits (124), Expect = 4.661e-8
Identity = 25/75 (33.33%), Postives = 40/75 (53.33%), Query Frame = 3 
Query:  201 TLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDW 425
            TLY+GNLS    E  I ELF + G  K   M +D     P  +CFVE++    A + +  +NG ++  + ++ +W
Sbjct:    8 TLYVGNLSRDVTEALILELFGQIGPCKSCKMIVDTAGHDP--YCFVEFYEHRHATATIAAMNGRKILGKEVKVNW 80
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Medaka
Match: EIF3G (eukaryotic translation initiation factor 3 subunit G [Source:NCBI gene;Acc:101161244])

HSP 1 Score: 52.373 bits (124), Expect = 5.582e-8
Identity = 25/77 (32.47%), Postives = 40/77 (51.95%), Query Frame = 3 
Query:  195 SLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDW 425
            + T+ + NLS  TRE  + ELF   G + R+ +  D+N     GF F+ +  RE A  A+  ++G   D  I+  +W
Sbjct:  215 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKNTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 291
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Planmine SMEST
Match: SMESG000060570.1 (SMESG000060570.1)

HSP 1 Score: 270.781 bits (691), Expect = 9.362e-94
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 3 
Query:   84 MPRDPRLIKKISTGGLSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKDXXXXXXXXXXXXXXDEFXXXXXXXXXXXXKIVQQKLELTEDVA 572
            MPRDPRLIKKISTGGLSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKDGRQFGRGRTGGQVRDEFRRDYDSGRGGYGKIVQQKLELTEDVA
Sbjct:    1 MPRDPRLIKKISTGGLSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFKDGRQFGRGRTGGQVRDEFRRDYDSGRGGYGKIVQQKLELTEDVA 163
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Planmine SMEST
Match: SMESG000045560.1 (SMESG000045560.1)

HSP 1 Score: 54.299 bits (129), Expect = 8.396e-9
Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 3 
Query:  219 LSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDWDAGFK 440
            LS  T+EE +W+ F + GK+  V + +DR KR   G+ F++Y   E A  A+   +GT +D   IR D+  G K
Sbjct:  115 LSKKTKEETLWDKFEKYGKIDNVRLIMDRGKRESLGYAFIDYKEIEFAMKAMKEAHGTEIDGNNIRLDYSVGKK 188
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Planmine SMEST
Match: SMESG000052838.1 (SMESG000052838.1)

HSP 1 Score: 50.8322 bits (120), Expect = 1.496e-7
Identity = 27/89 (30.34%), Postives = 44/89 (49.44%), Query Frame = 3 
Query:  159 GSRGEQEKALLKSLTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDW 425
             SR +       S  + I  LS  T E  +W+ F   GK+K V + +D+  +   GF F+ Y   + A +A+   NG  LD +++R D+
Sbjct:   47 SSRSKNNTTPDPSTCIGIFGLSKKTSERTLWKTFGNFGKIKSVSLIVDKFTKESLGFAFINYEELDSATNAIKETNGMTLDSKVVRVDY 135
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Planmine SMEST
Match: SMESG000005564.1 (SMESG000005564.1)

HSP 1 Score: 48.521 bits (114), Expect = 9.516e-7
Identity = 26/74 (35.14%), Postives = 39/74 (52.70%), Query Frame = 3 
Query:  201 TLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTD 422
            ++Y+G L     E  +WELF +AG V  V M  DR      G+ FVE+   E A+ A+  +N  +L  + IR +
Sbjct:   14 SIYVGGLDGKVTEAILWELFLQAGPVVNVHMPKDRVTGLHQGYGFVEFLGEEDADYAMKIMNMIKLYGKPIRVN 87
[Close]
BLAST of Nuclear cap-binding protein subunit 2 vs. Planmine SMEST
Match: SMESG000073709.1 (SMESG000073709.1)

HSP 1 Score: 48.1358 bits (113), Expect = 1.408e-6
Identity = 25/74 (33.78%), Postives = 43/74 (58.11%), Query Frame = 3 
Query:  204 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYINGTRLDDRIIRTDW 425
            +++G+++     + + E FS  G+V    +  D + + P G+ FV Y T+E+AE A+  +NG  L  R IRT+W
Sbjct:  110 IFVGDIAPEIETQFLRERFSLFGRVTECKIIKDMHTQKPKGYGFVAYATKEEAEEALNKMNGKFLGTRQIRTNW 183
The following BLAST results are available for this feature:
BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
NCBP22.614e-5069.52nuclear cap binding protein subunit 2 [Source:HGNC... [more]
NCBP26.291e-4670.10nuclear cap binding protein subunit 2 [Source:HGNC... [more]
NCBP2L1.033e-3353.28nuclear cap binding protein subunit 2 like [Source... [more]
NCBP2L1.033e-3353.28nuclear cap binding protein subunit 2 like [Source... [more]
NCBP23.605e-2375.58nuclear cap binding protein subunit 2 [Source:HGNC... [more]
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BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ncbp-22.534e-4761.02Nuclear cap-binding protein subunit 2 [Source:Uni... [more]
ncbp-22.534e-4761.02Nuclear cap-binding protein subunit 2 [Source:Uni... [more]
ncbp-21.687e-2073.47Nuclear cap-binding protein subunit 2 [Source:Uni... [more]
ncbp-21.687e-2073.47Nuclear cap-binding protein subunit 2 [Source:Uni... [more]
cpf-22.410e-1137.18Cleavage and Polyadenylation Factor [Source:UniPr... [more]
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BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Cbp201.102e-5067.81gene:FBgn0022943 transcript:FBtr0083551[more]
CstF644.280e-935.29gene:FBgn0027841 transcript:FBtr0083660[more]
Spx2.435e-735.14gene:FBgn0015818 transcript:FBtr0070894[more]
trv1.201e-628.42gene:FBgn0085391 transcript:FBtr0344217[more]
tsu1.298e-631.08gene:FBgn0033378 transcript:FBtr0088567[more]
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BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ncbp25.877e-4969.06nuclear cap binding protein subunit 2 [Source:NCBI... [more]
cirbpb2.858e-938.36cold inducible RNA binding protein b [Source:ZFIN;... [more]
cirbpb6.080e-938.36cold inducible RNA binding protein b [Source:ZFIN;... [more]
cirbpb6.250e-938.36cold inducible RNA binding protein b [Source:ZFIN;... [more]
eif3g6.863e-832.47eukaryotic translation initiation factor 3, subuni... [more]
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BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
nprl31.056e-4871.01NPR3-like, GATOR1 complex subunit [Source:Xenbase;... [more]
nprl31.924e-4870.00NPR3-like, GATOR1 complex subunit [Source:Xenbase;... [more]
nprl31.781e-4368.61NPR3-like, GATOR1 complex subunit [Source:Xenbase;... [more]
cirbp7.315e-1038.36cold inducible RNA binding protein [Source:NCBI ge... [more]
cirbp9.672e-1038.36cold inducible RNA binding protein [Source:NCBI ge... [more]
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BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Ncbp21.895e-5069.52nuclear cap binding protein subunit 2 [Source:MGI ... [more]
Ncbp23.917e-5069.52nuclear cap binding protein subunit 2 [Source:MGI ... [more]
Cirbp7.553e-1035.62cold inducible RNA binding protein [Source:MGI Sym... [more]
Cirbp4.346e-935.62cold inducible RNA binding protein [Source:MGI Sym... [more]
Cirbp4.616e-935.62cold inducible RNA binding protein [Source:MGI Sym... [more]
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BLAST of Nuclear cap-binding protein subunit 2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|B7P877|NCBP2_IXOSC7.344e-5273.79Nuclear cap-binding protein subunit 2 OS=Ixodes sc... [more]
sp|Q1HE01|NCBP2_BOMMO2.302e-5173.05Nuclear cap-binding protein subunit 2 OS=Bombyx mo... [more]
sp|B4NB54|NCBP2_DROWI6.348e-5169.18Nuclear cap-binding protein subunit 2 OS=Drosophil... [more]
sp|B3LYP1|NCBP2_DROAN2.153e-5068.49Nuclear cap-binding protein subunit 2 OS=Drosophil... [more]
sp|B4LZ88|NCB2B_DROVI2.427e-5068.49Nuclear cap-binding protein subunit 2B OS=Drosophi... [more]
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BLAST of Nuclear cap-binding protein subunit 2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
R7TRZ91.969e-5370.39Nuclear cap-binding protein subunit 2 OS=Capitella... [more]
A0A433TSG63.623e-5372.30Nuclear cap-binding protein subunit 2 OS=Elysia ch... [more]
A0A2T7NAV61.615e-5277.30Nuclear cap-binding protein subunit 2 OS=Pomacea c... [more]
A0A2C9JRG42.993e-5266.88Nuclear cap-binding protein subunit 2 OS=Biomphala... [more]
A0A067RBF05.873e-5272.19Nuclear cap-binding protein subunit 2 OS=Zootermop... [more]
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BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ncbp25.484e-4967.62nuclear cap binding protein subunit 2 [Source:NCBI... [more]
cirbpb5.659e-835.62cold inducible RNA binding protein b [Source:ZFIN;... [more]
cirbpb5.659e-835.62cold inducible RNA binding protein b [Source:ZFIN;... [more]
cirbpb5.701e-835.62cold inducible RNA binding protein b [Source:ZFIN;... [more]
eif3g5.872e-832.47eukaryotic translation initiation factor 3 subunit... [more]
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BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSPMAT00000008236.12.946e-5064.41pep scaffold:Pmarinus_7.0:GL481499:15174:17509:-1 ... [more]
ENSPMAT00000007216.13.099e-2748.28pep scaffold:Pmarinus_7.0:GL497490:2135:3082:1 gen... [more]
sf3b47.827e-835.14splicing factor 3b, subunit 4 [Source:ZFIN;Acc:ZDB... [more]
tra2b1.497e-733.33transformer 2 beta homolog [Source:ZFIN;Acc:ZDB-GE... [more]
rbmx1.230e-635.62RNA binding motif protein X-linked [Source:NCBI ge... [more]
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BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 5
Match NameE-valueIdentityDescription
CBC23.728e-3052.58Small subunit of the heterodimeric cap binding com... [more]
NSR16.207e-1034.18Nucleolar protein that binds nuclear localization ... [more]
PUB14.657e-822.13Poly (A)+ RNA-binding protein; abundant mRNP-compo... [more]
HSH491.485e-732.43U2-snRNP associated splicing factor; similar to th... [more]
PAB11.092e-625.53Poly(A) binding protein; part of the 3'-end RNA-pr... [more]
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BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO399524.175e-4865.71Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO301495.022e-935.14Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO479285.215e-935.14Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO457028.137e-935.14Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO449311.721e-833.33Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Nuclear cap-binding protein subunit 2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ncbp27.449e-4968.57nuclear cap binding protein subunit 2 [Source:NCBI... [more]
cirbpa1.203e-838.36cold inducible RNA binding protein [Source:NCBI ge... [more]
cirbpa1.610e-838.36cold inducible RNA binding protein [Source:NCBI ge... [more]
ENSORLT00000003149.24.661e-833.33nucleolysin TIA-1 [Source:NCBI gene;Acc:101155125][more]
EIF3G5.582e-832.47eukaryotic translation initiation factor 3 subunit... [more]
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BLAST of Nuclear cap-binding protein subunit 2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000060570.19.362e-94100.00SMESG000060570.1[more]
SMESG000045560.18.396e-937.84SMESG000045560.1[more]
SMESG000052838.11.496e-730.34SMESG000052838.1[more]
SMESG000005564.19.516e-735.14SMESG000005564.1[more]
SMESG000073709.11.408e-633.78SMESG000073709.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30028130 ID=SMED30028130|Name=Nuclear cap-binding protein subunit 2|organism=Schmidtea mediterranea sexual|type=transcript|length=591bp
ATTTATAAAAAATTTTATATTTCGAAGTAATTTATCAATAATTTAAATAA
TTTAAATTTTTTAAATTTCGATTTTTTTGCATTATGCCTAGAGATCCAAG
ATTAATAAAAAAAATATCAACTGGTGGTCTCAGTTCATATCGAGATCAAC
AATATAAAGGGTCCAGAGGTGAACAAGAAAAAGCATTATTAAAAAGCTTA
ACTTTATACATTGGTAATTTATCATTTTTTACTCGAGAAGAACAAATTTG
GGAGTTATTTTCAAGAGCTGGAAAAGTAAAACGTGTCATAATGGGTCTGG
ATCGAAATAAAAGAACACCATGTGGATTTTGTTTCGTTGAATATTTCACC
CGAGAACAAGCTGAAAGTGCAGTTTGCTACATCAATGGAACTAGATTGGA
TGACAGGATAATAAGAACCGACTGGGATGCAGGATTCAAAGACGGGAGAC
AATTTGGAAGAGGACGAACCGGAGGCCAAGTGCGAGATGAATTCAGGCGA
GATTATGATTCCGGCCGAGGTGGTTATGGTAAAATTGTTCAACAAAAGCT
CGAATTAACAGAAGATGTTGCATAATTTTGAATAGTTTCTA
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protein sequence of SMED30028130-orf-1

>SMED30028130-orf-1 ID=SMED30028130-orf-1|Name=SMED30028130-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=164bp
MPRDPRLIKKISTGGLSSYRDQQYKGSRGEQEKALLKSLTLYIGNLSFFT
REEQIWELFSRAGKVKRVIMGLDRNKRTPCGFCFVEYFTREQAESAVCYI
NGTRLDDRIIRTDWDAGFKDGRQFGRGRTGGQVRDEFRRDYDSGRGGYGK
IVQQKLELTEDVA*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR027157NCBP2
IPR034148NCBP2_RRM
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0000339RNA cap binding
GO:0003723RNA binding
Vocabulary: cellular component
TermDefinition
GO:0005846nuclear cap binding complex
GO:0005634nucleus
Vocabulary: biological process
TermDefinition
GO:0006397mRNA processing
GO:0008380RNA splicing
GO:0031047gene silencing by RNA
GO:0045292mRNA cis splicing, via spliceosome
GO:0000398mRNA splicing, via spliceosome
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 40..113
e-value: 1.7E-19
score: 80.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 41..111
e-value: 3.2E-15
score: 55.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 39..117
score: 14.931
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 8..125
e-value: 4.8E-26
score: 93.2
IPR027157Nuclear cap-binding protein subunit 2PANTHERPTHR1884720 KD NUCLEAR CAP BINDING PROTEINcoord: 15..159
IPR034148NCBP2, RNA recognition motifCDDcd12240RRM_NCBP2coord: 41..118
e-value: 4.64191E-53
score: 161.175
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 34..149