Bicaudal D protein

Overview
NameBicaudal D protein
Smed IDSMED30028061
Length (bp)1803
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Bicaudal D protein (SMED30028061) t-SNE clustered cells

Violin plots show distribution of expression levels for Bicaudal D protein (SMED30028061) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Bicaudal D protein (SMED30028061) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Bicaudal D protein (SMED30028061) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30028061

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30028061SMESG000060877.1 SmedASXL_010408SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30028061SMESG000060877.1 dd_Smed_v4_7219_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30028061SMESG000060877.1 dd_Smed_v4_7219_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30028061SMESG000060877.1 dd_Smed_v4_7219_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
muscle cellSMED30028061SMESG000060877.1 dd_Smed_v4_7219_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30028061SMESG000060877.1 dd_Smed_v6_7219_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
head regionSMED30028061SMESG000060877.1 OX_Smed_1.0.17537ox_Smed_v2PMID:24238224
Kao et al., 2013		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Bicaudal D protein vs. TrEMBL
Match: A0A183KCM9 (Uncharacterized protein OS=Schistosoma curassoni OX=6186 GN=SCUD_LOCUS12769 PE=4 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.524e-35
Identity = 115/353 (32.58%), Postives = 177/353 (50.14%), Query Frame = 1 
Query:  313 AVECDYEMQLQALQKDIVTLRKDLSNQKKSQAFLVNEKNHEINDVINHNEKLMASLNIVKNENAGLNNKLMEFQEKVNNDRISMHEHVFQLELLKSEILSLREEKKQLEARIQEVMQERNILLVQLDQAQQRTEQLEKIDKQNRETIAVQEQDVLHLQQTTEFLQNSINNLQ----------RKNDGVKEI------SLADDLS------MNNNGPRPXXXXXXXXXXXXEDGVE--MDEDSVMTNMAMSNTSPWDLMLGGQQDEDNSNQP----------EFLRDLKVEVFEVYAQLRTICADLSFRNGN---DGSKPG-NTPDELALLEMDFKLGSLRDTLGELRGLLTDL 1257
            AVE DY+ Q++ LQ DI+ +R DL  +KK    +  EKN  I++++  N+ L   LN      A L  ++   + +    + SM EHV  +E L+ EI  LREEK  LE ++  V++ERN LL  L+ + Q    +  ++ ++  TI +Q+ ++  LQ+T   L N ++ L            ++D VK +      SL  +L+        N    P  L         +D VE  MD+D+ M  ++  N    D++       D+ N P           F+ +L+ EV E+Y Q+  +C +L    G      SK G +TPDELA++EMDF+LGSLR  L +LRGLL DL
Sbjct:   39 AVESDYDAQVKELQTDIIAMRIDLKKEKKMCRQMEREKNTTISELMQQNQSLTCRLNTSSENEALLREEMSTLRLEFLKHKSSMQEHVQSIESLRQEITKLREEKHHLENQLNTVVEERNSLLQSLNDSYQEIRMMRHVNNEHIATINIQDAEITRLQETASILHNRLHKLSIQTGEQKSSSNEDDRVKPVDSQPHRSLMAELAEQKMIQAENYNCSPFTLED-------DDNVEFEMDDDTYMAYLSCFN---QDIISDSLVPSDSHNIPLESSNVNTKETFINELRSEVTEIYQQMNRMCVELCALTGTKQESCSKAGTHTPDELAMVEMDFRLGSLRSVLTDLRGLLKDL 381
[Close]
BLAST of Bicaudal D protein vs. TrEMBL
Match: A0A183N2Q9 (Uncharacterized protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS22584 PE=4 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.849e-33
Identity = 118/353 (33.43%), Postives = 177/353 (50.14%), Query Frame = 1 
Query:  313 AVECDYEMQLQALQKDIVTLRKDLSNQKKSQAFLVNEKNHEINDVINHNEKLMASLNIVKNENAGLNNKLMEFQEKVNNDRISMHEHVFQLELLKSEILSLREEKKQLEARIQEVMQERNILLVQLDQAQQRTEQLEKIDKQNRETIAVQEQDVLHLQQTTEFLQNSINNL------QRKN----DGVKEI------SLADDLS------MNNNGPRPXXXXXXXXXXXXEDGVE--MDEDSVMTNMAMSNTSPWDLMLGGQQDEDNSNQP----------EFLRDLKVEVFEVYAQLRTICADLSFRNGN---DGSKPG-NTPDELALLEMDFKLGSLRDTLGELRGLLTDL 1257
            AVE DY+ Q++ LQ DI+ +R DL  +KK    +  EKN  I++++  N+ L   LN      A L  ++   + +    + SM EHV  +E L+ EI  LREEK  LE ++  V++ERN LL  L+ + Q    +  ++ ++  TI +Q+ ++  LQ+T   L N ++ L      Q+ N    D VK +      SL  +L+        N    P  L         +D VE  MD+D   T MA  +    D++       D+ N P           F+ +L+ EV E+Y Q+  +C +L    G      SK G +TPDELA++EMDF+LGSLR  L +LRGLL DL
Sbjct:   39 AVESDYDAQVKELQTDIIAMRIDLKKEKKMCRQMEREKNTTISELMQQNQSLTCRLNTSSENEALLREEMSTLRLEFLKHKSSMQEHVQSIESLRQEITKLREEKHHLENQLNTVVEERNSLLESLNDSYQEIRMMRHVNNEHVATINIQDAEITRLQETASILHNRLHKLSIQTGEQKSNSNEDDRVKPVDSQPHRSLMAELAEQKMIQAENYNCSPFTLED-------DDNVEFEMDDD---TYMAYLSCFDQDIISDSLVPSDSHNIPLESSNVNTKETFINELRSEVTEIYQQMNRMCVELCALTGTKQESCSKVGTHTPDELAMVEMDFRLGSLRSVLTDLRGLLKDL 381
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BLAST of Bicaudal D protein vs. TrEMBL
Match: A0A094ZLG2 (Bicaudal D-related protein 1 OS=Schistosoma haematobium OX=6185 GN=MS3_03778 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.373e-33
Identity = 122/374 (32.62%), Postives = 193/374 (51.60%), Query Frame = 1 
Query:  241 LIEEFQQKIYXXXXXXXXXXXXXXAVECDYEMQLQALQKDIVTLRKDLSNQKKSQAFLVNEKNHEINDVINHNEKLMASLNIVKNENAGLNNKLMEFQEKVNNDRISMHEHVFQLELLKSEILSLREEKKQLEARIQEVMQERNILLVQLDQAQQRTEQLEKIDKQNRETIAVQEQDVLHLQQTTEFLQNSINNLQ----------RKNDGVKEI------SLADDLS------MNNNGPRPXXXXXXXXXXXXEDGVE--MDEDSVMTNMAM-------SNTSPWDLMLGGQQDEDNSNQPEFLRDLKVEVFEVYAQLRTICADLSFRNGN---DGSKPG-NTPDELALLEMDFKLGSLRDTLGELRGLLTDL 1257
            ++E   QKI+ +E E+  LK +LEAVE DY+ Q++ LQ DI+ +R DL  +KK    +  EKN  I++++  N+ L   LN      A L  ++   + +    + SM EHV  +E L+ EI  LREEK  LE ++  V++ERN LL  L+ + Q    +  ++ ++  TI +Q+ ++  LQ+T   L N ++ L            ++D VK +      SL  +L+        N    P  L         +D VE  MD+D+ M  ++         +  P+D      +  + + +  F+ +L+ EV E+Y Q+  +C +L    G      SK G +TPDELA++EMDF+LGSLR  L +LRGLL DL
Sbjct:   33 VLESLLQKIHSLEEERRILKLRLEAVESDYDDQVKELQTDIIAMRIDLKKEKKMCRQMEREKNTTISELMQQNQSLTCRLNTSSENEALLREEMSTLRLEFLKHKSSMQEHVQSIESLRQEITKLREEKHHLENQLNTVVEERNSLLESLNDSYQEIRMMRHVNNEHVATINIQDAEITRLQETASILHNRLHKLSIQTGEQKSSSNEDDRVKPVDSQPHRSLMAELAEQKMIQAENYNCSPFTLED-------DDNVEFEMDDDTYMAYLSCFDQDIISDSLVPFDSHNISLESSNVNTKETFINELRSEVTEIYQQMNRMCVELCALTGTKQESCSKVGTHTPDELAMVEMDFRLGSLRSVLTDLRGLLKDL 399
[Close]
BLAST of Bicaudal D protein vs. TrEMBL
Match: A0A430QF30 (Coiled-coil domain-containing protein 64 OS=Schistosoma bovis OX=6184 GN=DC041_0001046 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.459e-33
Identity = 122/370 (32.97%), Postives = 188/370 (50.81%), Query Frame = 1 
Query:  241 LIEEFQQKIYXXXXXXXXXXXXXXAVECDYEMQLQALQKDIVTLRKDLSNQKKSQAFLVNEKNHEINDVINHNEKLMASLNIVKNENAGLNNKLMEFQEKVNNDRISMHEHVFQLELLKSEILSLREEKKQLEARIQEVMQERNILLVQLDQAQQRTEQLEKIDKQNRETIAVQEQDVLHLQQTTEFLQNSINNLQRKNDGVKEISLADD-LSMNNNGPRPXXXXXXXXXXXXE--------------DGVE--MDEDSVMTNMAMSNTSPWDLMLGGQQDEDNSNQP----------EFLRDLKVEVFEVYAQLRTICADLSFRNGN---DGSKPG-NTPDELALLEMDFKLGSLRDTLGELRGLLTDL 1257
            ++E   QKI+ +E E+  LK +LEAVE DY+ Q++ LQ DI+ +R DL  +KK    +  EKN  I++++  N+ L   LN      A L  ++   + +    + SM EHV  +E L+ EI  LREEK  LE ++  V++ERN LL  L+ + Q    +   + ++  TI +Q+ ++  LQ+T   L N ++ L  +    K  S  DD +   ++ P  + +         +              D VE  MD+D   T MA  +    D++       D+ N P           F+ +L+ EV E+Y Q+  +C +L    G      SK G +TPDELA++EMDF+LGSLR  L +LRGLL DL
Sbjct:   33 VLESLLQKIHSLEKERRILKLRLEAVESDYDAQVKELQTDIIAMRIDLKKEKKMCRQMEREKNTTISELMQQNQSLTCRLNTSSENEALLREEMSTLRLEFLKHKSSMQEHVQSIESLRQEITKLREEKHHLENQLNTVVEERNSLLQSLNDSYQEIRMMRHANNEHIATINIQDAEITRLQETASILHNRLHKLSIQTGEQKSSSNEDDRVKTVDSQPHRSLMAELAEQKMIQAENYNCSPFTLEDDDNVEFEMDDD---TYMAYLSCFDQDIISDSLVPSDSHNIPLESSNVNTKETFINELRSEVTEIYQQMNRMCVELCALTGTKQESCSKVGTHTPDELAMVEMDFRLGSLRSVLTDLRGLLKDL 399
[Close]
BLAST of Bicaudal D protein vs. TrEMBL
Match: A0A0R3WB84 (Uncharacterized protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS7880 PE=4 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.433e-33
Identity = 115/391 (29.41%), Postives = 201/391 (51.41%), Query Frame = 1 
Query:  220 LKVKNELLIEEFQQKIYXXXXXXXXXXXXXXAVECDYEMQLQALQKDIVTLRKDLSNQKKSQAFLVNEKNHEINDVINHNEKLMASLNIVKNENAGLNNKLMEFQEKVNNDRISMHEHVFQLELLKSEILSLREEKKQLEARIQEVMQERNILLVQLDQAQQRTEQLEKIDKQNRETIAVQEQDVLHLQQTTEFLQ------NSINNLQRK---NDGVKEIS---------LADDLSMNNN-------GPRPXXXXXXXXXXXXEDGVEMDEDSVMTNMAMSNTS-PWDLMLGGQQ------------DEDNSNQPEFLRDLKVEVFEVYAQLRTICADLSFRNGNDGS-----KPGN-TPDELALLEMDFKLGSLRDTLGELRGLLTDLM 1260
            L+ +N+ L+E+F Q+I++++ EK +++ +L AVE DY+ Q++ LQ +I+ LR+++  QK+       E    +  +  HN  L   L+         + ++ E Q+ ++  R ++  HV Q+E L++EI  L+E+K  LE ++Q ++ ER+ LL  L  AQQ    L++     +  I  Q+ ++  LQ+    L+      NS+ +  RK   + G +++S         L  +LS  N          +   L  ++     +DG+E+D+ S++  M  + T  P     G  +                S + EFL D + EV E+Y QLR +C D+S ++  + S     +PG+ TPD+LA +E D +L SLR+ L +LRGLL DL+
Sbjct:   34 LRQENQQLLEQFCQQIHDIQREKETVRLRLIAVESDYDAQMKELQAEIMNLREEVQQQKRRSVQRTREHEATVQSLCEHNAALQKKLDEANQSATEASVQMKEMQQHLHTARAAIQSHVQQIESLRAEINHLKEDKATLEQKLQAIIDERDYLLTTLSDAQQANALLQQESANQQLVITCQDNELAQLQEAAALLKDQLQTLNSVASPSRKATVSTGAEKVSGQTSTPHQSLMGELSAANANNAEDDWWYKHVQLDPSMMEFYEDDGIEIDDASLLAAMTSNGTVLPNSEESGAAKMVTSSDLKCDDPSAGGSTEEEFLGDFRAEVAEIYQQLRQMCVDVSAQSSTNASSTTDHRPGDWTPDQLARIEWDCRLTSLRNVLTDLRGLLQDLV 424
[Close]
BLAST of Bicaudal D protein vs. Planmine SMEST
Match: SMESG000060877.1 (SMESG000060877.1)

HSP 1 Score: 844.343 bits (2180), Expect = 0.000e+0
Identity = 430/430 (100.00%), Postives = 430/430 (100.00%), Query Frame = 1 
Query:  313 AVECDYEMQLQALQKDIVTLRKDLSNQKKSQAFLVNEKNHEINDVINHNEKLMASLNIVKNENAGLNNKLMEFQEKVNNDRISMHEHVFQLELLKSEILSLREEKKQLEARIQEVMQERNILLVQLDQAQQRTEQLEKIDKQNRETIAVQEQDVLHLQQTTEFLQNSINNLQRKNDGVKEISLADDLSMNNNGPRPXXXXXXXXXXXXEDGVEMDEDSVMTNMAMSNTSPWDLMLGGQQDEDNSNQPEFLRDLKVEVFEVYAQLRTICADLSFRNGNDGSKPGNTPDELALLEMDFKLGSLRDTLGELRGLLTDLMKPHAVCNEDVSMQSMILKMEETSKVLDHKSKYLDQLQEELGFQERKLEELLRNMDSSEDTDKIKQMVLYKKYDIEQRMTRTRSEMEVLTSSMYLSETGDNQKFLDFEEDYCEYD 1602
            AVECDYEMQLQALQKDIVTLRKDLSNQKKSQAFLVNEKNHEINDVINHNEKLMASLNIVKNENAGLNNKLMEFQEKVNNDRISMHEHVFQLELLKSEILSLREEKKQLEARIQEVMQERNILLVQLDQAQQRTEQLEKIDKQNRETIAVQEQDVLHLQQTTEFLQNSINNLQRKNDGVKEISLADDLSMNNNGPRPANLWWNVWVANNEDGVEMDEDSVMTNMAMSNTSPWDLMLGGQQDEDNSNQPEFLRDLKVEVFEVYAQLRTICADLSFRNGNDGSKPGNTPDELALLEMDFKLGSLRDTLGELRGLLTDLMKPHAVCNEDVSMQSMILKMEETSKVLDHKSKYLDQLQEELGFQERKLEELLRNMDSSEDTDKIKQMVLYKKYDIEQRMTRTRSEMEVLTSSMYLSETGDNQKFLDFEEDYCEYD
Sbjct:   14 AVECDYEMQLQALQKDIVTLRKDLSNQKKSQAFLVNEKNHEINDVINHNEKLMASLNIVKNENAGLNNKLMEFQEKVNNDRISMHEHVFQLELLKSEILSLREEKKQLEARIQEVMQERNILLVQLDQAQQRTEQLEKIDKQNRETIAVQEQDVLHLQQTTEFLQNSINNLQRKNDGVKEISLADDLSMNNNGPRPANLWWNVWVANNEDGVEMDEDSVMTNMAMSNTSPWDLMLGGQQDEDNSNQPEFLRDLKVEVFEVYAQLRTICADLSFRNGNDGSKPGNTPDELALLEMDFKLGSLRDTLGELRGLLTDLMKPHAVCNEDVSMQSMILKMEETSKVLDHKSKYLDQLQEELGFQERKLEELLRNMDSSEDTDKIKQMVLYKKYDIEQRMTRTRSEMEVLTSSMYLSETGDNQKFLDFEEDYCEYD 443
The following BLAST results are available for this feature:
BLAST of Bicaudal D protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Bicaudal D protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Bicaudal D protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Bicaudal D protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Bicaudal D protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Bicaudal D protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Bicaudal D protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Bicaudal D protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A183KCM96.524e-3532.58Uncharacterized protein OS=Schistosoma curassoni O... [more]
A0A183N2Q91.849e-3333.43Uncharacterized protein OS=Schistosoma margrebowie... [more]
A0A094ZLG23.373e-3332.62Bicaudal D-related protein 1 OS=Schistosoma haemat... [more]
A0A430QF303.459e-3332.97Coiled-coil domain-containing protein 64 OS=Schist... [more]
A0A0R3WB844.433e-3329.41Uncharacterized protein OS=Taenia asiatica OX=6051... [more]
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BLAST of Bicaudal D protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Bicaudal D protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Bicaudal D protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Bicaudal D protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Bicaudal D protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Bicaudal D protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000060877.10.000e+0100.00SMESG000060877.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30028061 ID=SMED30028061|Name=Bicaudal D protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1803bp
TCTATATAAATCTTATATGTAAAAATGAGCCAAACCACAGTATCTCATAG
TAATTTGAATATTGAAATTAGTAATTGTTTAAAAAATTACATTGAACGTG
AAACTACTTATAATTGTAATCCAAGTGAAAAAACTATTTACGATGAATTG
GAGGAAAAGGAACGAGATTTATTGTTAGCAGCAGAATTGGGCCAAGCTCT
ACTTAGTGCAAATGAAACCCTAAAAGTTAAAAATGAACTGTTGATTGAGG
AATTTCAGCAGAAAATTTATGAAATGGAAAATGAGAAATTGTCTCTCAAG
AAAAAACTCGAAGCTGTTGAATGTGATTATGAAATGCAATTGCAGGCCCT
TCAAAAGGATATTGTGACTCTTAGAAAAGATTTGAGTAATCAGAAAAAGA
GCCAAGCATTTCTGGTAAACGAGAAAAATCATGAAATCAATGATGTCATT
AATCACAATGAAAAGTTGATGGCGTCATTGAATATTGTCAAAAATGAAAA
TGCTGGTTTAAACAATAAATTGATGGAATTCCAAGAGAAAGTAAACAATG
ATCGGATTTCGATGCATGAGCATGTCTTCCAATTGGAACTGCTGAAATCT
GAAATTTTGTCACTGAGAGAAGAGAAAAAGCAATTGGAAGCACGCATACA
AGAAGTGATGCAAGAGAGAAATATTCTGTTAGTCCAGCTAGATCAAGCAC
AGCAGCGTACAGAGCAATTGGAAAAAATTGATAAACAAAACCGGGAGACT
ATAGCGGTACAGGAGCAGGATGTTCTTCATCTACAACAAACGACAGAATT
TCTACAGAATTCAATTAATAATCTTCAAAGGAAAAATGATGGCGTGAAGG
AGATTAGTTTAGCTGATGATTTATCTATGAATAATAATGGACCGCGGCCA
GCAAATTTGTGGTGGAATGTTTGGGTAGCAAATAACGAAGACGGTGTTGA
AATGGATGAAGATTCAGTTATGACTAATATGGCAATGTCGAATACTTCAC
CTTGGGATTTAATGTTAGGTGGCCAACAAGATGAAGATAACAGCAATCAA
CCTGAGTTTTTACGTGATCTTAAAGTGGAAGTATTTGAAGTTTATGCCCA
GTTAAGAACAATTTGTGCTGATCTCTCTTTTCGAAACGGAAATGATGGTA
GTAAGCCCGGAAATACTCCAGATGAATTAGCTCTTTTGGAAATGGATTTC
AAATTGGGATCTCTTCGAGATACTTTAGGAGAGCTGCGTGGGTTATTGAC
AGATCTAATGAAACCGCATGCAGTTTGTAACGAAGATGTCAGTATGCAAT
CAATGATATTGAAAATGGAAGAAACCAGTAAAGTTTTAGATCATAAGTCG
AAATATCTTGATCAGTTACAAGAAGAGCTGGGTTTCCAAGAAAGGAAACT
TGAAGAATTATTGCGCAACATGGATAGCTCTGAAGACACTGATAAAATAA
AACAGATGGTTTTATACAAAAAATATGATATTGAACAAAGGATGACAAGG
ACTCGTTCAGAAATGGAAGTTCTCACGTCAAGTATGTACTTGTCTGAAAC
AGGTGACAATCAAAAGTTCCTTGACTTTGAGGAGGATTATTGCGAATATG
ATTAATCTGTGGGAGATCACGTCATCTATTCGGTTTTTATTTATTCATTG
CATTTGTCAGATTTATCGCTATCTATTTGATGAGATTTCCAATAGATTAG
TTGCATTGCTTCTGTGATGAGATGATTTTGTCAGTTTAATTCATGATTAA
TTTAAATTGAAATATTTTTTAATTTTTTTCTCCATATATTGCTTAATTCG
AAC
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protein sequence of SMED30028061-orf-1

>SMED30028061-orf-1 ID=SMED30028061-orf-1|Name=SMED30028061-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=527bp
MSQTTVSHSNLNIEISNCLKNYIERETTYNCNPSEKTIYDELEEKERDLL
LAAELGQALLSANETLKVKNELLIEEFQQKIYEMENEKLSLKKKLEAVEC
DYEMQLQALQKDIVTLRKDLSNQKKSQAFLVNEKNHEINDVINHNEKLMA
SLNIVKNENAGLNNKLMEFQEKVNNDRISMHEHVFQLELLKSEILSLREE
KKQLEARIQEVMQERNILLVQLDQAQQRTEQLEKIDKQNRETIAVQEQDV
LHLQQTTEFLQNSINNLQRKNDGVKEISLADDLSMNNNGPRPANLWWNVW
VANNEDGVEMDEDSVMTNMAMSNTSPWDLMLGGQQDEDNSNQPEFLRDLK
VEVFEVYAQLRTICADLSFRNGNDGSKPGNTPDELALLEMDFKLGSLRDT
LGELRGLLTDLMKPHAVCNEDVSMQSMILKMEETSKVLDHKSKYLDQLQE
ELGFQERKLEELLRNMDSSEDTDKIKQMVLYKKYDIEQRMTRTRSEMEVL
TSSMYLSETGDNQKFLDFEEDYCEYD*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000101muscle cell
PLANA:0000418head
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 23..43
NoneNo IPR availableCOILSCoilCoilcoord: 62..89
NoneNo IPR availableCOILSCoilCoilcoord: 362..389
NoneNo IPR availableCOILSCoilCoilcoord: 104..152
NoneNo IPR availableCOILSCoilCoilcoord: 167..187
NoneNo IPR availablePANTHERPTHR32123FAMILY NOT NAMEDcoord: 1..385
NoneNo IPR availablePANTHERPTHR32123:SF13BICAUDAL D-RELATED PROTEIN HOMOLOGcoord: 1..385