SMED30028058

Overview
NameSMED30028058
Smed IDSMED30028058
Length (bp)1874
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30028058 (SMED30028058) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30028058 (SMED30028058) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30028058 (SMED30028058) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30028058 (SMED30028058) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30028058

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30028058h1SMcG0006404 SmedASXL_009656SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30028058h1SMcG0006404 dd_Smed_v4_13931_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30028058h1SMcG0006404 dd_Smed_v4_13931_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30028058h1SMcG0006404 dd_Smed_v4_13931_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30028058h1SMcG0006404 dd_Smed_v6_13931_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of SMED30028058 vs. Planmine SMEST
Match: SMESG000056175.1 (SMESG000056175.1)

HSP 1 Score: 714.146 bits (1842), Expect = 0.000e+0
Identity = 350/355 (98.59%), Postives = 353/355 (99.44%), Query Frame = -2 
Query:  767 MALESLPLALTIASVAFGLLLVSGLVWLIPVYIQKQKSKTRKKEMQKKVNEELVRNIRYRSPSTVSTFPQNSKINDYGATQMRQLEKSERESFIVPIEEKAEVPSIAITCEDELTEGAVSESETQFKVSDGVLDKISLINSKRRFSSIVFTHSDELKVLSEDANLNTGEEKKERRASMSLFETCKLACPELTQNMGQSTEHLNQLVLSDSESYGKLYFMLSQPDNDNKSLECVVIKITDIVNMKKKHYQLQMELFVENSKLIYSNQTDIQICVGEVVNFDESFTVDIDGKVQFNDSNENFVLVFTLVQFDSKKIKSQKFGVIRFDLLGLIDGQILSMNGQEQFVICRNFITLTEK 1831
            MALESLPLALTIASVAFGLLLVSGLVWLIPVYIQKQKSKTRKKEMQKKVNEELV+NIRYRSPSTVSTFPQNSKINDYGATQMRQLEKSERESFIVPIEEK EVPSIAITCEDELTEGAVSESETQFKVSDGVLDKISLINSKRRFSSIVFTHSDELKVLSEDANLNTGEEKKERRASMSLFETCKLACPELTQNMGQSTEHLNQLVLSD+ESYGKLYFMLSQPDNDNKSLECVVIKITDIVNMKKKHYQLQMELFVENSKLIYSNQTDIQ CVGEVVNFDESFTVDIDGKVQFNDSNENFVLVFTL+QFDSKKIKSQKFGVIRFDLLGLIDGQILSMNGQEQFVICRNFITLTEK
Sbjct:    1 MALESLPLALTIASVAFGLLLVSGLVWLIPVYIQKQKSKTRKKEMQKKVNEELVKNIRYRSPSTVSTFPQNSKINDYGATQMRQLEKSERESFIVPIEEKTEVPSIAITCEDELTEGAVSESETQFKVSDGVLDKISLINSKRRFSSIVFTHSDELKVLSEDANLNTGEEKKERRASMSLFETCKLACPELTQNMGQSTEHLNQLVLSDAESYGKLYFMLSQPDNDNKSLECVVIKITDIVNMKKKHYQLQMELFVENSKLIYSNQTDIQTCVGEVVNFDESFTVDIDGKVQFNDSNENFVLVFTLLQFDSKKIKSQKFGVIRFDLLGLIDGQILSMNGQEQFVICRNFITLTEK 355
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BLAST of SMED30028058 vs. Planmine SMEST
Match: SMESG000056172.1 (SMESG000056172.1)

HSP 1 Score: 278.485 bits (711), Expect = 2.496e-91
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = -2 
Query:  278 MEVKDIASSKPYSGLSVRITLASEGKVLDSRKSKVIKKKYQTEDGIFKVDESFEFNLSLQKSIIKDNSKSLAKFTSQDTFVTLFLCGRNNIGFSHVIGKCVLGPIQFADGTGLLHWQKGNNNLGEIVYQWHYLKN 682
            MEVKDIASSKPYSGLSVRITLASEGKVLDSRKSKVIKKKYQTEDGIFKVDESFEFNLSLQKSIIKDNSKSLAKFTSQDTFVTLFLCGRNNIGFSHVIGKCVLGPIQFADGTGLLHWQKGNNNLGEIVYQWHYLKN
Sbjct:    1 MEVKDIASSKPYSGLSVRITLASEGKVLDSRKSKVIKKKYQTEDGIFKVDESFEFNLSLQKSIIKDNSKSLAKFTSQDTFVTLFLCGRNNIGFSHVIGKCVLGPIQFADGTGLLHWQKGNNNLGEIVYQWHYLKN 135
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BLAST of SMED30028058 vs. Planmine SMEST
Match: SMESG000058817.1 (SMESG000058817.1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.443e-18
Identity = 115/502 (22.91%), Postives = 215/502 (42.83%), Query Frame = -2 
Query:  293 IQKQKSKTRKKEMQKKVNEELVRNIRYRSPSTVSTFPQNSKINDYGATQMRQLEKSERESFIVPIEEKAEVPSIAITCEDELTEGAVSESETQFKVSDGVLDKISLINSK-RRFSSIVFTHSDEL--------------KVLSEDANLNTGEEKKERRASMSLF-ETCKLACPELTQNMGQSTEHLNQLVLSDSESYGKLYFMLSQPDNDNKSLECVVIKITDIVNMKKKHYQLQMELFVENSKLIYSNQTDIQ--ICVGEVVN--FDESFTVDIDGKVQFNDSNENFVLVFTLVQFDSKKIKSQK-FGVIRFDLLGLIDGQILSMNGQEQFVICRNFITLTEKEKFKERSGNALVFLRFSKLCPLNFVIGVMEVKDIASSKPYSGLSVRITLASEGKVLDSRKSKVIKKKYQTEDGIFKVDESFEFNLSLQKSIIKDNSKSLAKFTSQDTFVTLFLCGRNNIGFSHVIGKCVLGPIQFADGTGLLHWQKGNNNLGEIVYQW 1735
            ++K +   RK+  +KKV EEL  N+RY +P ++S            A Q R    S R++           P+I+I C+   +E + S   T++         I LI +K RR+S + F+  + +              ++  E   +   E  + RR S + + +    +  E+  ++  ST+ ++          G+LYF++    N NKSL  + + I     ++    +    ++V+ + L       +Q   CV  + N  F+++FT  I    Q             L   + +K++S +  G + FDL  ++      +  QE   I R       + K   R G+ LV L+ S    +   + V E +++        + VR +L  + KV+ ++K + +K+   +       ++ F+F ++ +   I D           +  + L  C R+ + FSH+IG+C++G IQ+ +G GLL W +  +  G  V QW
Sbjct:   36 LKKSRISNRKQFSRKKVVEELHHNVRYNTPDSLSV--------SLAAVQPRS---SRRQTL----------PAISI-CQQN-SEFS-SSGHTRY-------GSIELIRTKVRRYSEVGFSRPEPVEKSRKISLDSEALSRICEESTEMYEYESSRSRRGSTASYADKDSTSHSEIDVDLYSSTDDVSSQSPMCGCGLGRLYFIV----NHNKSLNNLYVTIVKATYVRSSVVKETCCVYVKITLLDAECTYPVQRSSCVTSMGNPMFNQTFTFHITSIPQ----------QLQLTVKEVRKLESNRVIGYVWFDLSCMLKDNRAMITSQE---ISREIFG---ENKLYCRRGDVLVNLKVSANDSIEINVCVAEARNLIVRNQNISVYVRASLLIKHKVVQTKKGQPVKRSISSPS----FNDRFKFVITNKDISILD-----------ECCIILCFCSRSRVRFSHLIGRCIIGNIQYTEGEGLLQWTESISKPGTSVSQW 471
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BLAST of SMED30028058 vs. Planmine SMEST
Match: SMESG000060758.1 (SMESG000060758.1)

HSP 1 Score: 63.1586 bits (152), Expect = 3.092e-10
Identity = 78/326 (23.93%), Postives = 149/326 (45.71%), Query Frame = -2 
Query:  290 MGQSTEHLNQLVLSDSESYGKLYFMLSQPDNDNKSLECVVIKITDIVNM---KKKHYQLQMELFVENSKLIYSNQTDIQICVGEVVNFDESFTVDIDGKVQFNDSNENFVLVFTLVQFDSKKIK--SQKFGVIRFDLLGLIDGQILSMNGQEQFVICRNFITLTEKEKFKERSGNALVFLRFSKLCPLNFV-IGVMEVKDIASSKPYSGLSVRITLASEGKVLDSRKSKVIKKKYQTEDGIFKVDESFEFNLSLQKSIIKDNSKSLAKFTSQDTFVTLFLCGRNNIGFSHVIGKCVLGPIQFADGTGLLHWQKGNNNLGEIVYQWH 1249
            + +S    N L+LS      +L+F +S   ND+  +  V IK  + V+    K  +  +++E++ E S  IYS+ T     +G  + F+++   ++         +  F+ +++L  F  K+ K  ++  G + F L  L    I S N  ++F        +T   K  E  G  LV + F K      V +G++   ++      +G+  ++      + + S ++  IK     ++ +F + +   F+  + +S       SL+K     T++ + +CGRN  G S +IG+C+ GPI ++D  G  HW      +  +VY+WH
Sbjct:  156 VDKSYNFFNSLILS------RLHFTISF--NDSAKIMYVNIKKVNNVSCTFEKTINCSIKVEVYDERSNRIYSSVTATVTSMGNPI-FEQTLAFEV---------HSTFINLWSLRFFILKREKKINKNIGSVAFSLDCL--SPIRSPNMDQEFSR-----MITYDFKNPENKGIVLVSVSFHKELDKYIVSVGIIRALNLPLDNNDNGVYAKMIFMDLEQEIKSERTITIKT--DIKNPLFPLAQ---FSHEISES-------SLSK-----TWLVVNVCGRNVFGISRIIGRCLFGPIAYSDHDGSSHWSDAITLIDRVVYKWH 439
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BLAST of SMED30028058 vs. Planmine SMEST
Match: SMESG000036721.1 (SMESG000036721.1)

HSP 1 Score: 48.9062 bits (115), Expect = 1.503e-6
Identity = 36/160 (22.50%), Postives = 69/160 (43.12%), Query Frame = -2 
Query:  290 RSGNALVFLRFSKLCPLNFV-IGVMEVKDIASSKPYSGLSVRITLASEGKVLDSRKSKVIKK----KYQTEDGIFKVDESFEFNLSLQKSIIKDNSKSLAKFTSQDTFVTLFLCGRNNIGFSHVIGKCVLGPIQFADGTG-LLHWQKGNNNLGEIVYQWH 751
            R G  L+ L +S+     F+ + +   K++   +  + +  R T+    K + +++S  +K+     Y   + +F VD                      K    +  V + +C R+ IGFSH++GK +LG + + D    L+HW+   +     V +WH
Sbjct:   17 RRGEILISLMYSEHQSSAFLSVNLHRAKNLQIRQHDNSVFARCTMLVGNKPIKTKRSITVKQDISAPYVDLESVFNVD----------------------KLNIMEVGVVIHICSRSKIGFSHLLGKLILGSVMYTDDKSVLIHWKDMISYQNRTVTKWH 154
The following BLAST results are available for this feature:
BLAST of SMED30028058 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028058 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028058 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028058 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028058 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028058 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028058 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028058 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028058 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028058 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028058 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028058 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028058 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028058 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000056175.10.000e+098.59SMESG000056175.1[more]
SMESG000056172.12.496e-91100.00SMESG000056172.1[more]
SMESG000058817.15.443e-1822.91SMESG000058817.1[more]
SMESG000060758.13.092e-1023.93SMESG000060758.1[more]
SMESG000036721.11.503e-622.50SMESG000036721.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30028058 ID=SMED30028058|Name=SMED30028058|organism=Schmidtea mediterranea sexual|type=transcript|length=1874bp
TGAATTCTAAAATATATATTAATGACAAAAACCATGACTATACAAAATAT
CACATTTATAAATCAAAATAATGATACTATCATCTATTAAGAAGTGGAAT
ATGTTAAAAAAATAAGATATCAATATGATGCACAAAAATTAACAAACAAT
TGATAAACAATAGTTAATCTTTTTGGACATTTTATTCTTTTCTCAAACTG
AAATGTTTAATGCCTCTTCTACGATTCTAATCACAATGCTAAAAATTATT
ATTATTGGACTCAGTAAATTTCTTTCAATTCTTCAAATAGTGCCATTGAT
AAACAATCTCTCCTAAATTATTGTTTCCTTTTTGCCAATGAAGGAGACCG
GTTCCATCGGCGAATTGGATCGGACCCAAGACGCATTTTCCAATAACATG
ACTAAAACCGATATTGTTTCTACCACATAAAAACAGTGTGACAAAAGTAT
CCTGGCTGGTAAATTTTGCAAGTGATTTTGAATTGTCTTTAATAATTGAT
TTTTGCAAGGATAAATTGAATTCAAAAGACTCATCGACTTTAAAAATCCC
ATCTTCGGTTTGGTATTTCTTCTTTATAACCTTTGACTTTCTCGAATCCA
GAACTTTGCCTTCCGAAGCTAAAGTTATTCGAACACTTAATCCACTATAT
GGCTTGCTGCTAGCTATATCTTTAACTTCCATTACCCCAATAACAAAGTT
TAATGGACATAACTTTGAAAATCTCAAAAATACTAAAGCATTCCCACTTC
TTTCTTTGAACTTTTCCTTTTCTGTTAACGTGATGAAATTCCGGCAAATA
ACAAATTGCTCCTGACCATTCATGCTTAGGATTTGACCATCAATCAGTCC
TAGAAGATCGAATCTAATAACTCCAAATTTTTGAGATTTAATCTTTTTCG
AGTCGAATTGTACCAGAGTAAACACTAAAACAAAATTTTCATTGCTATCA
TTAAACTGAACTTTTCCATCAATATCCACGGTGAAACTTTCATCGAAGTT
TACGACCTCTCCAACGCAGATCTGGATATCAGTTTGATTAGAGTAAATAA
GCTTTGAATTTTCCACAAATAGTTCCATTTGCAATTGGTAATGTTTCTTT
TTCATATTGACAATATCGGTGATTTTGATAACGACACATTCCAAAGATTT
ATTATCATTATCGGGCTGTGACAACATAAAATATAGTTTTCCATAACTTT
CGGAATCTGATAACACTAGTTGATTCAAATGTTCAGTAGATTGTCCCATA
TTTTGTGTCAATTCTGGACATGCTAATTTACAGGTTTCAAATAAAGACAT
GCTGGCTCTTCTTTCTTTTTTCTCTTCTCCTGTGTTTAAATTTGCATCCT
CCGACAAAACCTTCAACTCGTCACTGTGAGTAAAAACAATGGAACTGAAG
CGGCGTTTGCTATTGATTAAAGAAATTTTATCAAGAACACCATCAGAAAC
TTTAAATTGAGTTTCTGATTCTGAAACTGCACCTTCGGTAAGTTCGTCTT
CACAAGTAATAGCAATTGAAGGAACTTCAGCCTTTTCCTCTATCGGTACG
ATAAAGCTTTCTCTTTCTGATTTCTCTAACTGTCTCATTTGTGTTGCACC
GTAATCATTGATTTTAGAATTTTGTGGAAATGTTGACACAGTGCTTGGAG
ATCGATATCGAATATTTCTCACCAGTTCTTCATTGACTTTCTTTTGCATT
TCTTTTTTTCTGGTTTTTGACTTTTGTTTTTGAATATAGACCGGAATTAG
CCATACCAAACCAGAAACTAATAACAATCCAAAAGCGACACTTGCAATTG
TTAGAGCTAAGGGCAAGGATTCTAATGCCATAAATGAATATTTGAAATCG
TCGACGTATCAAATTACAAAAAAA
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protein sequence of SMED30028058-orf-1

>SMED30028058-orf-1 ID=SMED30028058-orf-1|Name=SMED30028058-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=519bp
MALESLPLALTIASVAFGLLLVSGLVWLIPVYIQKQKSKTRKKEMQKKVN
EELVRNIRYRSPSTVSTFPQNSKINDYGATQMRQLEKSERESFIVPIEEK
AEVPSIAITCEDELTEGAVSESETQFKVSDGVLDKISLINSKRRFSSIVF
THSDELKVLSEDANLNTGEEKKERRASMSLFETCKLACPELTQNMGQSTE
HLNQLVLSDSESYGKLYFMLSQPDNDNKSLECVVIKITDIVNMKKKHYQL
QMELFVENSKLIYSNQTDIQICVGEVVNFDESFTVDIDGKVQFNDSNENF
VLVFTLVQFDSKKIKSQKFGVIRFDLLGLIDGQILSMNGQEQFVICRNFI
TLTEKEKFKERSGNALVFLRFSKLCPLNFVIGVMEVKDIASSKPYSGLSV
RITLASEGKVLDSRKSKVIKKKYQTEDGIFKVDESFEFNLSLQKSIIKDN
SKSLAKFTSQDTFVTLFLCGRNNIGFSHVIGKCVLGPIQFADGTGLLHWQ
KGNNNLGEIVYQWHYLKN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR035892C2_domain_sf
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035892C2 domain superfamilyGENE3DG3DSA:2.60.40.150coord: 376..518
e-value: 9.7E-7
score: 30.7
NoneNo IPR availablePANTHERPTHR10024:SF206SYNAPTOTAGMINcoord: 179..517
NoneNo IPR availablePANTHERPTHR10024SYNAPTOTAGMINcoord: 179..517
NoneNo IPR availableTMHMMTMhelixcoord: 10..32