Overview
Name SMED30028033
Smed ID SMED30028033
Length (bp) 734
Neoblast Clusters
Zeng et. al., 2018
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progenies
We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.
We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)
Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2 ), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.
Expression of SMED30028033 (SMED30028033) t-SNE clustered cells
Violin plots show distribution of expression levels for SMED30028033 (SMED30028033) in cells (dots) of each of the 12 neoblast clusters.
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Anatomical Expression
PAGE et. al., 2020
SMED30028033
has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE
Expressed In Reference Transcript Gene Models Published Transcript Transcriptome Publication Specimen Lifecycle Evidence parenchymal cell SMED30028033 h1SMcG0005839 dd_Smed_v4_9156_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30028033 h1SMcG0005839 dd_Smed_v4_9473_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchyma SMED30028033 h1SMcG0005839 dd_Smed_v4_9473_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchymal cell SMED30028033 h1SMcG0005839 dd_Smed_v4_9473_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30028033 h1SMcG0005842 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 epidermis SMED30028033 h1SMcG0005842 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 cephalic ganglia SMED30028033 h1SMcG0005838 dd_Smed_v4_21787_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchymal cell SMED30028033 h1SMcG0005838 dd_Smed_v4_21787_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 epidermis SMED30028033 h1SMcG0005817 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:28292427 Wurtzel et al., 2017 epidermis SMED30028033 h1SMcG0005823 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:28292427 Wurtzel et al., 2017 epidermis SMED30028033 h1SMcG0005839 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:28292427 Wurtzel et al., 2017 epidermis SMED30028033 h1SMcG0005841 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:28292427 Wurtzel et al., 2017 epidermis SMED30028033 h1SMcG0005839 dd_Smed_v4_9473_0_1 dd_Smed_v4 PMID:28292427 Wurtzel et al., 2017 epidermis SMED30028033 h1SMcG0005842 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:28292427 Wurtzel et al., 2017 epidermis SMED30028033 h1SMcG0005838 dd_Smed_v4_16984_0_1 dd_Smed_v4 PMID:28292427 Wurtzel et al., 2017 epidermis SMED30028033 h1SMcG0005817 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:28292427 Wurtzel et al., 2017 epidermis SMED30028033 h1SMcG0005823 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:28292427 Wurtzel et al., 2017 epidermis SMED30028033 h1SMcG0005839 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:28292427 Wurtzel et al., 2017 epidermis SMED30028033 h1SMcG0005841 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:28292427 Wurtzel et al., 2017 epidermis SMED30028033 h1SMcG0005839 dd_Smed_v4_9473_0_1 dd_Smed_v4 PMID:28292427 Wurtzel et al., 2017 epidermis SMED30028033 h1SMcG0005842 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:28292427 Wurtzel et al., 2017 epidermis SMED30028033 h1SMcG0005838 dd_Smed_v4_16984_0_1 dd_Smed_v4 PMID:28292427 Wurtzel et al., 2017 epidermis SMED30028033 h1SMcG0005817 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:28292427 Wurtzel et al., 2017 epidermis SMED30028033 h1SMcG0005823 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:28292427 Wurtzel et al., 2017 epidermis SMED30028033 h1SMcG0005839 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:28292427 Wurtzel et al., 2017 epidermis SMED30028033 h1SMcG0005841 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:28292427 Wurtzel et al., 2017 epidermis SMED30028033 h1SMcG0005839 dd_Smed_v4_9473_0_1 dd_Smed_v4 PMID:28292427 Wurtzel et al., 2017 epidermis SMED30028033 h1SMcG0005842 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:28292427 Wurtzel et al., 2017 epidermis SMED30028033 h1SMcG0005838 dd_Smed_v4_16984_0_1 dd_Smed_v4 PMID:28292427 Wurtzel et al., 2017 intestinal phagocyte SMED30028033 h1SMcG0005839 Contig92 newmark_ests PMID:23079596 Forsthoefel et al., 2012 intestinal phagocyte SMED30028033 h1SMcG0005839 Contig92 uc_Smed_v2 PMID:23079596 Forsthoefel et al., 2012 intestinal phagocyte SMED30028033 h1SMcG0005834 Contig92 newmark_ests PMID:23079596 Forsthoefel et al., 2012 intestinal phagocyte SMED30028033 h1SMcG0005834 Contig92 uc_Smed_v2 PMID:23079596 Forsthoefel et al., 2012 intestinal phagocyte SMED30028033 h1SMcG0005911 Contig92 newmark_ests PMID:23079596 Forsthoefel et al., 2012 intestinal phagocyte SMED30028033 h1SMcG0005911 Contig92 uc_Smed_v2 PMID:23079596 Forsthoefel et al., 2012 intestinal phagocyte SMED30028033 h1SMcG0005839 Contig92 newmark_ests PMID:23079596 Forsthoefel et al., 2012 intestinal phagocyte SMED30028033 h1SMcG0005839 Contig92 uc_Smed_v2 PMID:23079596 Forsthoefel et al., 2012 intestinal phagocyte SMED30028033 h1SMcG0005834 Contig92 newmark_ests PMID:23079596 Forsthoefel et al., 2012 intestinal phagocyte SMED30028033 h1SMcG0005834 Contig92 uc_Smed_v2 PMID:23079596 Forsthoefel et al., 2012 intestinal phagocyte SMED30028033 h1SMcG0005911 Contig92 newmark_ests PMID:23079596 Forsthoefel et al., 2012 intestinal phagocyte SMED30028033 h1SMcG0005911 Contig92 uc_Smed_v2 PMID:23079596 Forsthoefel et al., 2012 intestinal phagocyte SMED30028033 h1SMcG0005839 Contig92 newmark_ests PMID:23079596 Forsthoefel et al., 2012 intestinal phagocyte SMED30028033 h1SMcG0005839 Contig92 uc_Smed_v2 PMID:23079596 Forsthoefel et al., 2012 intestinal phagocyte SMED30028033 h1SMcG0005834 Contig92 newmark_ests PMID:23079596 Forsthoefel et al., 2012 intestinal phagocyte SMED30028033 h1SMcG0005834 Contig92 uc_Smed_v2 PMID:23079596 Forsthoefel et al., 2012 intestinal phagocyte SMED30028033 h1SMcG0005911 Contig92 newmark_ests PMID:23079596 Forsthoefel et al., 2012 intestinal phagocyte SMED30028033 h1SMcG0005911 Contig92 uc_Smed_v2 PMID:23079596 Forsthoefel et al., 2012 pharynx SMED30028033 h1SMcG0005817 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30028033 h1SMcG0005817 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 epidermis SMED30028033 h1SMcG0005817 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 cephalic ganglia SMED30028033 h1SMcG0005817 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 neuron SMED30028033 h1SMcG0005817 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchymal cell SMED30028033 h1SMcG0005817 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 pharynx SMED30028033 h1SMcG0005823 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30028033 h1SMcG0005823 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 epidermis SMED30028033 h1SMcG0005823 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 cephalic ganglia SMED30028033 h1SMcG0005823 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 neuron SMED30028033 h1SMcG0005823 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchymal cell SMED30028033 h1SMcG0005823 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30028033 h1SMcG0005839 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 epidermis SMED30028033 h1SMcG0005839 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30028033 h1SMcG0005841 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 epidermis SMED30028033 h1SMcG0005841 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30028033 h1SMcG0005839 dd_Smed_v4_9156_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchyma SMED30028033 h1SMcG0005839 dd_Smed_v4_9156_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchymal cell SMED30028033 h1SMcG0005839 dd_Smed_v4_9156_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30028033 h1SMcG0005839 dd_Smed_v4_9473_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchyma SMED30028033 h1SMcG0005839 dd_Smed_v4_9473_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchymal cell SMED30028033 h1SMcG0005839 dd_Smed_v4_9473_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30028033 h1SMcG0005842 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 epidermis SMED30028033 h1SMcG0005842 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 cephalic ganglia SMED30028033 h1SMcG0005838 dd_Smed_v4_21787_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchymal cell SMED30028033 h1SMcG0005838 dd_Smed_v4_21787_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 pharynx SMED30028033 h1SMcG0005817 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30028033 h1SMcG0005817 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 epidermis SMED30028033 h1SMcG0005817 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 cephalic ganglia SMED30028033 h1SMcG0005817 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 neuron SMED30028033 h1SMcG0005817 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchymal cell SMED30028033 h1SMcG0005817 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 pharynx SMED30028033 h1SMcG0005823 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30028033 h1SMcG0005823 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 epidermis SMED30028033 h1SMcG0005823 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 cephalic ganglia SMED30028033 h1SMcG0005823 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 neuron SMED30028033 h1SMcG0005823 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchymal cell SMED30028033 h1SMcG0005823 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30028033 h1SMcG0005839 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 epidermis SMED30028033 h1SMcG0005839 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30028033 h1SMcG0005841 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 epidermis SMED30028033 h1SMcG0005841 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30028033 h1SMcG0005839 dd_Smed_v4_9156_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchyma SMED30028033 h1SMcG0005839 dd_Smed_v4_9156_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchymal cell SMED30028033 h1SMcG0005839 dd_Smed_v4_9156_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30028033 h1SMcG0005839 dd_Smed_v4_9473_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchyma SMED30028033 h1SMcG0005839 dd_Smed_v4_9473_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchymal cell SMED30028033 h1SMcG0005839 dd_Smed_v4_9473_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30028033 h1SMcG0005842 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 epidermis SMED30028033 h1SMcG0005842 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 cephalic ganglia SMED30028033 h1SMcG0005838 dd_Smed_v4_21787_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchymal cell SMED30028033 h1SMcG0005838 dd_Smed_v4_21787_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 pharynx SMED30028033 h1SMcG0005817 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30028033 h1SMcG0005817 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 epidermis SMED30028033 h1SMcG0005817 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 cephalic ganglia SMED30028033 h1SMcG0005817 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 neuron SMED30028033 h1SMcG0005817 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchymal cell SMED30028033 h1SMcG0005817 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 pharynx SMED30028033 h1SMcG0005823 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30028033 h1SMcG0005823 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 epidermis SMED30028033 h1SMcG0005823 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 cephalic ganglia SMED30028033 h1SMcG0005823 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 neuron SMED30028033 h1SMcG0005823 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchymal cell SMED30028033 h1SMcG0005823 dd_Smed_v4_5097_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30028033 h1SMcG0005839 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 epidermis SMED30028033 h1SMcG0005839 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30028033 h1SMcG0005841 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 epidermis SMED30028033 h1SMcG0005841 dd_Smed_v4_2238_1_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30028033 h1SMcG0005839 dd_Smed_v4_9156_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchyma SMED30028033 h1SMcG0005839 dd_Smed_v4_9156_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018
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Alignments
SMED30028033 aligns in the following genomic locations:
Homology
BLAST of SMED30028033 vs. Planmine SMEST
Match:
SMESG000036045.1 (SMESG000036045.1)
HSP 1 Score: 234.958 bits (598), Expect = 9.556e-79
Identity = 114/120 (95.00%), Postives = 116/120 (96.67%), Query Frame = 1
Query: 244 MRGEPLFPSVNIEIVMNIIFAFITTLYLFLRDDVYKCFMNILSRVSKVIKTNIERSNDSFSLPATSTEKAKQNFEKFKNRNPGFVFDNFYGQLTFQMTCDICAEICNESFQVIKSLTLAV 603
MRGEPLFPSVNIEIVMNIIFAFITTLYLFLRDDVYKCFMNILSRVSKVIKTNIER NDSFSLPATSTEKAKQNFEKFKNRNPGFVFDNFYGQLTFQMTCDIC ICNESFQV+KS+ LAV
Sbjct: 1 MRGEPLFPSVNIEIVMNIIFAFITTLYLFLRDDVYKCFMNILSRVSKVIKTNIERPNDSFSLPATSTEKAKQNFEKFKNRNPGFVFDNFYGQLTFQMTCDICDNICNESFQVMKSMPLAV 120
BLAST of SMED30028033 vs. Planmine SMEST
Match:
SMESG000036117.1 (SMESG000036117.1)
HSP 1 Score: 176.792 bits (447), Expect = 4.061e-54
Identity = 92/129 (71.32%), Postives = 102/129 (79.07%), Query Frame = 1
Query: 274 NIEIVMNIIFAFITTLYLFLRDDVYKCFMNILSRVSKVIKTNIERSNDSFSLPATSTEKAKQNFEKFKNRNPGFVFDNFYGQLTFQMTCDICAEICNESFQVIKSLTLAV-----PVRLFVQVFLYFSN 645
N++ + + +IT DDVYKCFMNILSRVSKVIKTNIERSNDSFSLPATSTEKAKQNFEKFKNRNPGFVFDNFYGQLTFQMTCDIC ICNESFQV+KS+ LAV P+ L V +FS+
Sbjct: 121 NLDKSLETVQQYITESSF--GDDVYKCFMNILSRVSKVIKTNIERSNDSFSLPATSTEKAKQNFEKFKNRNPGFVFDNFYGQLTFQMTCDICDNICNESFQVMKSMPLAVANSKFPIPLENCVKAFFSD 247
BLAST of SMED30028033 vs. Planmine SMEST
Match:
SMESG000036117.1 (SMESG000036117.1)
HSP 1 Score: 176.792 bits (447), Expect = 2.596e-53
Identity = 89/108 (82.41%), Postives = 94/108 (87.04%), Query Frame = 1
Query: 337 DDVYKCFMNILSRVSKVIKTNIERSNDSFSLPATSTEKAKQNFEKFKNRNPGFVFDNFYGQLTFQMTCDICAEICNESFQVIKSLTLAV-----PVRLFVQVFLYFSN 645
DDVYKCFMNILSRVSKVIKTNIERSNDSFSLPATSTEKAKQNFEKFKNRNPGFVFDNFYGQLTFQMTCDIC ICNESFQV+KS+ LAV P+ L V +FS+
Sbjct: 140 DDVYKCFMNILSRVSKVIKTNIERSNDSFSLPATSTEKAKQNFEKFKNRNPGFVFDNFYGQLTFQMTCDICDNICNESFQVMKSMPLAVANSKFPIPLENCVKAFFSD 247
BLAST of SMED30028033 vs. Planmine SMEST
Match:
SMESG000036117.1 (SMESG000036117.1)
HSP 1 Score: 176.792 bits (447), Expect = 2.620e-53
Identity = 89/108 (82.41%), Postives = 94/108 (87.04%), Query Frame = 1
Query: 337 DDVYKCFMNILSRVSKVIKTNIERSNDSFSLPATSTEKAKQNFEKFKNRNPGFVFDNFYGQLTFQMTCDICAEICNESFQVIKSLTLAV-----PVRLFVQVFLYFSN 645
DDVYKCFMNILSRVSKVIKTNIERSNDSFSLPATSTEKAKQNFEKFKNRNPGFVFDNFYGQLTFQMTCDIC ICNESFQV+KS+ LAV P+ L V +FS+
Sbjct: 144 DDVYKCFMNILSRVSKVIKTNIERSNDSFSLPATSTEKAKQNFEKFKNRNPGFVFDNFYGQLTFQMTCDICDNICNESFQVMKSMPLAVANSKFPIPLENCVKAFFSD 251
BLAST of SMED30028033 vs. Planmine SMEST
Match:
SMESG000036069.1 (SMESG000036069.1)
HSP 1 Score: 167.933 bits (424), Expect = 2.521e-51
Identity = 80/96 (83.33%), Postives = 86/96 (89.58%), Query Frame = 1
Query: 319 LYLFLRDDVYKCFMNILSRVSKVIKTNIERSNDSFSLPATSTEKAKQNFEKFKNRNPGFVFDNFYGQLTFQMTCDICAEICNESFQVIKSLTLAVP 606
++ FL DDVYKCFMNILSRVSKVIKTNI+R N SLP T EKA++NFEKFKN+NPG VFDNFYGQLTFQMTCDICAEICNESFQVIKSLTLAVP
Sbjct: 1 MFSFLSDDVYKCFMNILSRVSKVIKTNIQRPNAYSSLPVTVMEKAQKNFEKFKNKNPGLVFDNFYGQLTFQMTCDICAEICNESFQVIKSLTLAVP 96
The following BLAST results are available for this feature:
Analyses
This transcript is derived from or has results from the following analyses
Sequences
The following sequences are available for this feature:
transcript sequence
>SMED30028033 ID=SMED30028033|Name=SMED30028033|organism=Schmidtea mediterranea sexual|type=transcript|length=734bp ATTCTTTGATTAGAATCAGACATTAGTGAATATTAAATACAAGTCCTTAG ATATGGAATAATCTTTTGTAGTGGTTGAGGTTGTTCCTTTCAGTTTGACT CCACATTTTAAAAACATAATTTCAAAACCTCAACCATAATTTTCATTGCG ATTTCAGTTATTTGCTTGGAAAATCGCGGATTTGCGTTTCGTATGGATTT CTTTGGAAAACTCTAAATGTTAATTAGACATGTTTTTTACAAAATGAGAG GTGAGCCTCTATTTCCCAGCGTAAATATTGAAATTGTAATGAATATTATA TTTGCATTTATTACAACATTGTATTTATTTCTCAGAGATGACGTATACAA GTGCTTCATGAATATATTGAGTCGGGTAAGTAAAGTGATCAAGACGAACA TTGAAAGGTCAAATGATTCCTTCAGCCTTCCGGCAACTTCTACTGAAAAG GCTAAGCAAAATTTCGAAAAATTTAAAAATAGAAATCCTGGATTCGTTTT CGATAATTTTTATGGCCAGTTGACATTCCAAATGACTTGTGATATTTGCG CTGAAATTTGCAATGAGTCCTTCCAAGTGATTAAATCGTTGACGTTGGCA GTTCCTGTAAGATTATTTGTACAAGTTTTCCTATATTTCAGCAATATATA AATGAACAAAATTTTTGAATAACGGTCGTAGTTTTTCTGTAAATATTTAC AATATTTGACATATTAAAGTAAATTTCTTTAAGA back to top protein sequence of SMED30028033-orf-1
>SMED30028033-orf-1 ID=SMED30028033-orf-1|Name=SMED30028033-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=145bp
MLIRHVFYKMRGEPLFPSVNIEIVMNIIFAFITTLYLFLRDDVYKCFMNI LSRVSKVIKTNIERSNDSFSLPATSTEKAKQNFEKFKNRNPGFVFDNFYG QLTFQMTCDICAEICNESFQVIKSLTLAVPVRLFVQVFLYFSNI* back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
Term Definition
PLANA:0000034 epidermis
PLANA:0000099 neuron
PLANA:0002032 epidermal cell
Vocabulary: INTERPRO
Term Definition
IPR038765 Papain-like_cys_pep_sf
InterPro
Analysis Name:
Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR Term IPR Description Source Source Term Source Description Alignment
IPR038765 Papain-like cysteine peptidase superfamily SUPERFAMILY SSF54001 Cysteine proteinases coord: 4..131
None No IPR available TMHMM TMhelix coord: 20..39