40S ribosomal protein S27

Overview
Name40S ribosomal protein S27
Smed IDSMED30027979
Length (bp)362
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of 40S ribosomal protein S27 (SMED30027979) t-SNE clustered cells

Violin plots show distribution of expression levels for 40S ribosomal protein S27 (SMED30027979) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 40S ribosomal protein S27 (SMED30027979) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 40S ribosomal protein S27 (SMED30027979) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30027979

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 9

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30027979SMESG000052687.1 SmedASXL_078970SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
pharynxSMED30027979SMESG000066109.1 SMESG000052687.1 SMESG000014240.1 SMESG000069832.1 SMESG000037642.1 dd_Smed_v4_106_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30027979SMESG000066109.1 SMESG000052687.1 SMESG000014240.1 SMESG000069832.1 SMESG000037642.1 dd_Smed_v4_106_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30027979SMESG000066109.1 SMESG000052687.1 SMESG000014240.1 SMESG000069832.1 SMESG000037642.1 dd_Smed_v4_106_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30027979SMESG000066109.1 SMESG000052687.1 SMESG000014240.1 SMESG000069832.1 SMESG000037642.1 dd_Smed_v4_106_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30027979SMESG000066109.1 SMESG000052687.1 SMESG000014240.1 SMESG000069832.1 SMESG000037642.1 dd_Smed_v4_106_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027979SMESG000066109.1 SMESG000052687.1 SMESG000014240.1 SMESG000069832.1 SMESG000037642.1 dd_Smed_v4_106_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30027979SMESG000066109.1 SMESG000052687.1 SMESG000014240.1 SMESG000069832.1 SMESG000037642.1 dd_Smed_v4_106_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30027979SMESG000066109.1 SMESG000052687.1 SMESG000014240.1 SMESG000069832.1 SMESG000037642.1 dd_Smed_v4_106_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Human
Match: RPS27L (ribosomal protein S27 like [Source:HGNC Symbol;Acc:HGNC:18476])

HSP 1 Score: 125.176 bits (313), Expect = 3.297e-38
Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    1 MPLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Human
Match: RPS27 (ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:10416])

HSP 1 Score: 122.479 bits (306), Expect = 3.962e-37
Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Human
Match: RPS27L (ribosomal protein S27 like [Source:HGNC Symbol;Acc:HGNC:18476])

HSP 1 Score: 120.939 bits (302), Expect = 2.656e-36
Identity = 62/86 (72.09%), Postives = 70/86 (81.40%), Query Frame = 3 
Query:   54 IIMPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
              + LA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:   15 FFVQLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 100
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Human
Match: RPS27L (ribosomal protein S27 like [Source:HGNC Symbol;Acc:HGNC:18476])

HSP 1 Score: 114.39 bits (285), Expect = 7.196e-34
Identity = 60/79 (75.95%), Postives = 65/79 (82.28%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSF 296
            MPLA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEG SF
Sbjct:    1 MPLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGISF 79
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Human
Match: RPS27L (ribosomal protein S27 like [Source:HGNC Symbol;Acc:HGNC:18476])

HSP 1 Score: 93.2041 bits (230), Expect = 6.550e-26
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 3 
Query:  156 MDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    1 MDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 52
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Celegans
Match: rps-27 (40S ribosomal protein S27 [Source:UniProtKB/Swiss-Prot;Acc:Q9TXP0])

HSP 1 Score: 123.25 bits (308), Expect = 6.901e-38
Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQ 308
            MPLA+D LHP  + E++  KLKRLV  PNSYFMDVKC GC KI+T+FSHA +VV+C GC+  LCQPT GKA+LTEGCSFRKKQ
Sbjct:    1 MPLAVDLLHPEPQREIRCHKLKRLVQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVGCNTVLCQPTRGKAKLTEGCSFRKKQ 83
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Celegans
Match: rps-27 (40S ribosomal protein S27 [Source:UniProtKB/Swiss-Prot;Acc:Q9TXP0])

HSP 1 Score: 123.25 bits (308), Expect = 6.901e-38
Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQ 308
            MPLA+D LHP  + E++  KLKRLV  PNSYFMDVKC GC KI+T+FSHA +VV+C GC+  LCQPT GKA+LTEGCSFRKKQ
Sbjct:    1 MPLAVDLLHPEPQREIRCHKLKRLVQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVGCNTVLCQPTRGKAKLTEGCSFRKKQ 83
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Fly
Match: RpS27 (gene:FBgn0039300 transcript:FBtr0084868)

HSP 1 Score: 124.02 bits (310), Expect = 4.187e-38
Identity = 58/82 (70.73%), Postives = 67/82 (81.71%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKK 305
            MPLA D LHP    E +K KLKRLV  PNSYFMDVKCPGC +I T+FSHAQ VV+C+GC+  LCQPTGG+A+LTEGCSFR+K
Sbjct:    1 MPLAKDLLHPLPAEEKRKHKLKRLVQHPNSYFMDVKCPGCYRITTVFSHAQGVVVCAGCATILCQPTGGRAKLTEGCSFRRK 82
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Fly
Match: RpS27 (gene:FBgn0039300 transcript:FBtr0304693)

HSP 1 Score: 124.02 bits (310), Expect = 4.187e-38
Identity = 58/82 (70.73%), Postives = 67/82 (81.71%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKK 305
            MPLA D LHP    E +K KLKRLV  PNSYFMDVKCPGC +I T+FSHAQ VV+C+GC+  LCQPTGG+A+LTEGCSFR+K
Sbjct:    1 MPLAKDLLHPLPAEEKRKHKLKRLVQHPNSYFMDVKCPGCYRITTVFSHAQGVVVCAGCATILCQPTGGRAKLTEGCSFRRK 82
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Zebrafish
Match: rps27.1 (ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549])

HSP 1 Score: 132.109 bits (331), Expect = 3.646e-41
Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLA D LHP+ + E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    1 MPLAKDLLHPTPEEERRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Zebrafish
Match: rps27.2 (ribosomal protein S27, isoform 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1735])

HSP 1 Score: 131.724 bits (330), Expect = 4.955e-41
Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLA D LHP+ + E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    1 MPLAKDLLHPTPEEEKRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Zebrafish
Match: rps27l (ribosomal protein S27 like [Source:ZFIN;Acc:ZDB-GENE-060331-65])

HSP 1 Score: 127.102 bits (318), Expect = 3.152e-39
Identity = 61/84 (72.62%), Postives = 70/84 (83.33%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLA D ++PS   E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    1 MPLARDLINPSFDLERRQHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Zebrafish
Match: rps27.2 (ribosomal protein S27, isoform 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1735])

HSP 1 Score: 93.2041 bits (230), Expect = 4.167e-26
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 3 
Query:  156 MDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    1 MDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 52
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Xenopus
Match: rps27l (ribosomal protein S27-like [Source:NCBI gene;Acc:100127556])

HSP 1 Score: 125.176 bits (313), Expect = 4.704e-38
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 3 
Query:   66 LAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            LA D L PS + E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:   14 LAKDLLLPSSEEEKRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 95
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Xenopus
Match: rps27l (ribosomal protein S27-like [Source:NCBI gene;Acc:100127556])

HSP 1 Score: 112.079 bits (279), Expect = 2.607e-32
Identity = 55/77 (71.43%), Postives = 61/77 (79.22%), Query Frame = 3 
Query:   66 LAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSF 296
            LA D L PS + E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEG S 
Sbjct:   67 LAKDLLLPSSEEEKRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGISL 143
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Mouse
Match: Rps27l (ribosomal protein S27-like [Source:MGI Symbol;Acc:MGI:1915191])

HSP 1 Score: 125.176 bits (313), Expect = 2.263e-38
Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    1 MPLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Mouse
Match: Rps27 (ribosomal protein S27 [Source:MGI Symbol;Acc:MGI:1888676])

HSP 1 Score: 122.479 bits (306), Expect = 2.720e-37
Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Mouse
Match: Rps27rt (ribosomal protein S27, retrogene [Source:MGI Symbol;Acc:MGI:3704345])

HSP 1 Score: 122.479 bits (306), Expect = 2.720e-37
Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Mouse
Match: Rps27 (ribosomal protein S27 [Source:MGI Symbol;Acc:MGI:1888676])

HSP 1 Score: 117.857 bits (294), Expect = 1.461e-35
Identity = 62/82 (75.61%), Postives = 69/82 (84.15%), Query Frame = 3 
Query:   66 LAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            LA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    1 LAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 82
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Mouse
Match: Rps27l (ribosomal protein S27-like [Source:MGI Symbol;Acc:MGI:1915191])

HSP 1 Score: 110.538 bits (275), Expect = 2.133e-32
Identity = 59/81 (72.84%), Postives = 64/81 (79.01%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLT-EGCSFR 299
            MPLA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLT E C F 
Sbjct:    1 MPLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEESCEFH 81
[Close]
BLAST of 40S ribosomal protein S27 vs. UniProt/SwissProt
Match: sp|P55833|RS27_HOMAM (40S ribosomal protein S27 OS=Homarus americanus OX=6706 GN=RPS27 PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 8.716e-42
Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLA D LHPS   E +KCKLKRLV  PNSYFMDVKCPGC KI+T+FSHAQ+VV C GC+  LCQPTGGKA+LT+GCSFRKKQN
Sbjct:    1 MPLAKDLLHPSPSEEKRKCKLKRLVQHPNSYFMDVKCPGCFKISTVFSHAQTVVACVGCATVLCQPTGGKAKLTDGCSFRKKQN 84
[Close]
BLAST of 40S ribosomal protein S27 vs. UniProt/SwissProt
Match: sp|Q3T0B7|RS27L_BOVIN (40S ribosomal protein S27-like OS=Bos taurus OX=9913 GN=RPS27L PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 8.589e-39
Identity = 64/84 (76.19%), Postives = 70/84 (83.33%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLA D LHPS   E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    1 MPLARDLLHPSLDEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
[Close]
BLAST of 40S ribosomal protein S27 vs. UniProt/SwissProt
Match: sp|Q7RVN2|RS27_NEUCR (40S ribosomal protein S27 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=crp-6 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 7.829e-38
Identity = 58/82 (70.73%), Postives = 68/82 (82.93%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKK 305
            M LA+D L+PS  SE +K KLK LVP+P S+FMDVKCPGC  I T+FSHAQ+VV+C GC+  LCQPTGGKARLTEGCSFR+K
Sbjct:    1 MVLAVDLLNPSPASEARKHKLKTLVPAPRSFFMDVKCPGCFTITTVFSHAQTVVICQGCTTVLCQPTGGKARLTEGCSFRRK 82
[Close]
BLAST of 40S ribosomal protein S27 vs. UniProt/SwissProt
Match: sp|P24051|RS27L_RAT (40S ribosomal protein S27-like OS=Rattus norvegicus OX=10116 GN=Rps27l PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 1.583e-37
Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    1 MPLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
[Close]
BLAST of 40S ribosomal protein S27 vs. UniProt/SwissProt
Match: sp|Q6ZWY3|RS27L_MOUSE (40S ribosomal protein S27-like OS=Mus musculus OX=10090 GN=Rps27l PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 1.583e-37
Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    1 MPLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
[Close]
BLAST of 40S ribosomal protein S27 vs. TrEMBL
Match: A0A0B7BKS9 (40S ribosomal protein S27 (Fragment) OS=Arion vulgaris OX=1028688 GN=ORF195597 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.724e-42
Identity = 69/92 (75.00%), Postives = 77/92 (83.70%), Query Frame = 3 
Query:   36 HRNF*LIIMPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            +R+F   IMPLA D LHPS   E ++CKLKRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFRKKQ+
Sbjct:    5 NRSFRSTIMPLAKDLLHPSLDEEKRRCKLKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRKKQH 96
[Close]
BLAST of 40S ribosomal protein S27 vs. TrEMBL
Match: A0A2C9JGF7 (40S ribosomal protein S27 OS=Biomphalaria glabrata OX=6526 GN=106056007 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.634e-41
Identity = 67/84 (79.76%), Postives = 73/84 (86.90%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLA D LHPS + E +KCKLKRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFRKKQ+
Sbjct:    1 MPLAKDLLHPSLEEEKRKCKLKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRKKQH 84
[Close]
BLAST of 40S ribosomal protein S27 vs. TrEMBL
Match: A9UDQ6 (40S ribosomal protein S27 OS=Flustra foliacea OX=478208 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.727e-41
Identity = 67/84 (79.76%), Postives = 72/84 (85.71%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLA D LHPS   E +KCKLKRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFRKKQ+
Sbjct:    1 MPLAKDLLHPSYDEEKRKCKLKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRKKQH 84
[Close]
BLAST of 40S ribosomal protein S27 vs. TrEMBL
Match: T1ELX4 (40S ribosomal protein S27 OS=Helobdella robusta OX=6412 GN=20197574 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.392e-41
Identity = 66/84 (78.57%), Postives = 74/84 (88.10%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLA D LHPS++ E +KCKLKRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    1 MPLAKDLLHPSQEEEKRKCKLKRLVQSPNSYFMDVKCPGCYKIMTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
[Close]
BLAST of 40S ribosomal protein S27 vs. TrEMBL
Match: A8UAH9 (40S ribosomal protein S27 OS=Barentsia elongata OX=478378 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.633e-41
Identity = 66/84 (78.57%), Postives = 73/84 (86.90%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLA D LHPS + E +KCKLKRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    1 MPLAKDLLHPSYEEEKRKCKLKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Cavefish
Match: rps27l (40S ribosomal protein S27-like [Source:NCBI gene;Acc:103041134])

HSP 1 Score: 131.339 bits (329), Expect = 6.368e-41
Identity = 63/84 (75.00%), Postives = 71/84 (84.52%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLAID L+PS   E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    1 MPLAIDLLNPSFDLERRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Cavefish
Match: ENSAMXT00000001947.2 (40S ribosomal protein S27 [Source:NCBI gene;Acc:103046684])

HSP 1 Score: 130.183 bits (326), Expect = 1.564e-40
Identity = 62/84 (73.81%), Postives = 70/84 (83.33%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLA D LHP  + E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    1 MPLAKDLLHPPPEEERRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Cavefish
Match: ENSAMXT00000052931.1 (40S ribosomal protein S27-like [Source:NCBI gene;Acc:103044954])

HSP 1 Score: 130.954 bits (328), Expect = 1.744e-40
Identity = 61/86 (70.93%), Postives = 71/86 (82.56%), Query Frame = 3 
Query:   54 IIMPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
              MPLA D+LHP+ + E ++ K KRLV  PNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:   16 FTMPLAKDFLHPTPEEERRRHKKKRLVQCPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 101
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Cavefish
Match: ENSAMXT00000037048.1 (40S ribosomal protein S27 [Source:NCBI gene;Acc:103046684])

HSP 1 Score: 117.857 bits (294), Expect = 1.766e-35
Identity = 56/76 (73.68%), Postives = 62/76 (81.58%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEG 287
            MPLA D LHP  + E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEG
Sbjct:    1 MPLAKDLLHPPPEEERRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEG 76
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Sea Lamprey
Match: rps27l (ribosomal protein S27 like [Source:ZFIN;Acc:ZDB-GENE-060331-65])

HSP 1 Score: 130.568 bits (327), Expect = 2.412e-41
Identity = 63/84 (75.00%), Postives = 71/84 (84.52%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLA D LHPS ++E +  K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    1 MPLAKDLLHPSLEAERRCHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Sea Lamprey
Match: RPS27L (ribosomal protein S27 like [Source:HGNC Symbol;Acc:HGNC:18476])

HSP 1 Score: 122.479 bits (306), Expect = 4.102e-38
Identity = 64/84 (76.19%), Postives = 70/84 (83.33%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLA D LHPS   E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    1 MPLAKDLLHPSLVEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Yeast
Match: RPS27B (Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S27, no bacterial homolog; RPS27B has a paralog, RPS27A, that arose from the whole genome duplication [Source:SGD;Acc:S000001063])

HSP 1 Score: 111.309 bits (277), Expect = 5.437e-34
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKK 305
            M L  D LHP+  SE +K KLK LV  P SYF+DVKCPGCL I T+FSHAQ+ V C  CS  LC PTGGKA+L+EG SFR+K
Sbjct:    1 MVLVQDLLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTPTGGKAKLSEGTSFRRK 82
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Yeast
Match: RPS27A (Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S27, no bacterial homolog; RPS27A has a paralog, RPS27B, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000001639])

HSP 1 Score: 111.309 bits (277), Expect = 6.478e-34
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKK 305
            M L  D LHP+  SE +K KLK LV  P SYF+DVKCPGCL I T+FSHAQ+ V C  CS  LC PTGGKA+L+EG SFR+K
Sbjct:    1 MVLVQDLLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTILCTPTGGKAKLSEGTSFRRK 82
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Nematostella
Match: EDO41437 (40S ribosomal protein S27 [Source:UniProtKB/TrEMBL;Acc:A7S494])

HSP 1 Score: 123.635 bits (309), Expect = 2.416e-38
Identity = 59/84 (70.24%), Postives = 68/84 (80.95%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPL  D L+ +   E ++ KLKRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C  CS  LCQPTGG+ARLTEGCSFR+KQN
Sbjct:    1 MPLFKDLLNVNPIEEKRRHKLKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVACSMVLCQPTGGRARLTEGCSFRRKQN 84
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Medaka
Match: ENSORLT00000012528.2 (40S ribosomal protein S27 [Source:NCBI gene;Acc:101156845])

HSP 1 Score: 131.339 bits (329), Expect = 5.991e-41
Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLA D LHP+ + E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    1 MPLAKDLLHPTPEVERRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Medaka
Match: ENSORLT00000000731.2 (pep primary_assembly:ASM223467v1:11:1273496:1274162:-1 gene:ENSORLG00000000594.2 transcript:ENSORLT00000000731.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 129.028 bits (323), Expect = 5.601e-40
Identity = 62/83 (74.70%), Postives = 70/83 (84.34%), Query Frame = 3 
Query:   63 PLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            PLA D LHPS + E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEGCSFR+KQ+
Sbjct:    5 PLAKDLLHPSPEEEKRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 87
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Medaka
Match: ENSORLT00000038315.1 (40S ribosomal protein S27 [Source:NCBI gene;Acc:101156845])

HSP 1 Score: 118.242 bits (295), Expect = 8.805e-36
Identity = 56/76 (73.68%), Postives = 63/76 (82.89%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEG 287
            MPLA D LHP+ + E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS  LCQPTGGKARLTEG
Sbjct:    1 MPLAKDLLHPTPEVERRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEG 76
[Close]
BLAST of 40S ribosomal protein S27 vs. Ensembl Medaka
Match: ENSORLT00000034180.1 (40S ribosomal protein S27-like [Source:NCBI gene;Acc:101161046])

HSP 1 Score: 99.7525 bits (247), Expect = 3.477e-28
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEG 287
            M LA D +HPS   E+++ K KRLV SPNS+FMDVKC GC +I T+FSHAQ+ V+C GCS  LC P+GGK R+T G
Sbjct:    1 MSLAKDLMHPSLAEEMRRHKKKRLVQSPNSFFMDVKCLGCYRITTVFSHAQTAVVCPGCSVVLCSPSGGKCRVTSG 76
[Close]
BLAST of 40S ribosomal protein S27 vs. Planmine SMEST
Match: SMESG000052687.1 (SMESG000052687.1)

HSP 1 Score: 174.096 bits (440), Expect = 5.121e-58
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 3 
Query:   60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311
            MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN
Sbjct:    1 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 84
The following BLAST results are available for this feature:
BLAST of 40S ribosomal protein S27 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RPS27L3.297e-3876.19ribosomal protein S27 like [Source:HGNC Symbol;Acc... [more]
RPS273.962e-3776.19ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC... [more]
RPS27L2.656e-3672.09ribosomal protein S27 like [Source:HGNC Symbol;Acc... [more]
RPS27L7.196e-3475.95ribosomal protein S27 like [Source:HGNC Symbol;Acc... [more]
RPS27L6.550e-2680.77ribosomal protein S27 like [Source:HGNC Symbol;Acc... [more]
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BLAST of 40S ribosomal protein S27 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rps-276.901e-3869.8840S ribosomal protein S27 [Source:UniProtKB/Swiss... [more]
rps-276.901e-3869.8840S ribosomal protein S27 [Source:UniProtKB/Swiss... [more]
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BLAST of 40S ribosomal protein S27 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
RpS274.187e-3870.73gene:FBgn0039300 transcript:FBtr0084868[more]
RpS274.187e-3870.73gene:FBgn0039300 transcript:FBtr0304693[more]
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BLAST of 40S ribosomal protein S27 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
rps27.13.646e-4173.81ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:... [more]
rps27.24.955e-4173.81ribosomal protein S27, isoform 2 [Source:ZFIN;Acc:... [more]
rps27l3.152e-3972.62ribosomal protein S27 like [Source:ZFIN;Acc:ZDB-GE... [more]
rps27.24.167e-2680.77ribosomal protein S27, isoform 2 [Source:ZFIN;Acc:... [more]
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BLAST of 40S ribosomal protein S27 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rps27l4.704e-3873.17ribosomal protein S27-like [Source:NCBI gene;Acc:1... [more]
rps27l2.607e-3271.43ribosomal protein S27-like [Source:NCBI gene;Acc:1... [more]
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BLAST of 40S ribosomal protein S27 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rps27l2.263e-3876.19ribosomal protein S27-like [Source:MGI Symbol;Acc:... [more]
Rps272.720e-3776.19ribosomal protein S27 [Source:MGI Symbol;Acc:MGI:1... [more]
Rps27rt2.720e-3776.19ribosomal protein S27, retrogene [Source:MGI Symbo... [more]
Rps271.461e-3575.61ribosomal protein S27 [Source:MGI Symbol;Acc:MGI:1... [more]
Rps27l2.133e-3272.84ribosomal protein S27-like [Source:MGI Symbol;Acc:... [more]
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BLAST of 40S ribosomal protein S27 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P55833|RS27_HOMAM8.716e-4276.1940S ribosomal protein S27 OS=Homarus americanus OX... [more]
sp|Q3T0B7|RS27L_BOVIN8.589e-3976.1940S ribosomal protein S27-like OS=Bos taurus OX=99... [more]
sp|Q7RVN2|RS27_NEUCR7.829e-3870.7340S ribosomal protein S27 OS=Neurospora crassa (st... [more]
sp|P24051|RS27L_RAT1.583e-3776.1940S ribosomal protein S27-like OS=Rattus norvegicu... [more]
sp|Q6ZWY3|RS27L_MOUSE1.583e-3776.1940S ribosomal protein S27-like OS=Mus musculus OX=... [more]
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BLAST of 40S ribosomal protein S27 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0B7BKS92.724e-4275.0040S ribosomal protein S27 (Fragment) OS=Arion vulg... [more]
A0A2C9JGF73.634e-4179.7640S ribosomal protein S27 OS=Biomphalaria glabrata... [more]
A9UDQ64.727e-4179.7640S ribosomal protein S27 OS=Flustra foliacea OX=4... [more]
T1ELX45.392e-4178.5740S ribosomal protein S27 OS=Helobdella robusta OX... [more]
A8UAH95.633e-4178.5740S ribosomal protein S27 OS=Barentsia elongata OX... [more]
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BLAST of 40S ribosomal protein S27 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
rps27l6.368e-4175.0040S ribosomal protein S27-like [Source:NCBI gene;A... [more]
ENSAMXT00000001947.21.564e-4073.8140S ribosomal protein S27 [Source:NCBI gene;Acc:10... [more]
ENSAMXT00000052931.11.744e-4070.9340S ribosomal protein S27-like [Source:NCBI gene;A... [more]
ENSAMXT00000037048.11.766e-3573.6840S ribosomal protein S27 [Source:NCBI gene;Acc:10... [more]
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BLAST of 40S ribosomal protein S27 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rps27l2.412e-4175.00ribosomal protein S27 like [Source:ZFIN;Acc:ZDB-GE... [more]
RPS27L4.102e-3876.19ribosomal protein S27 like [Source:HGNC Symbol;Acc... [more]
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BLAST of 40S ribosomal protein S27 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
RPS27B5.437e-3463.41Protein component of the small (40S) ribosomal sub... [more]
RPS27A6.478e-3463.41Protein component of the small (40S) ribosomal sub... [more]
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BLAST of 40S ribosomal protein S27 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO414372.416e-3870.2440S ribosomal protein S27 [Source:UniProtKB/TrEMB... [more]
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BLAST of 40S ribosomal protein S27 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4
Match NameE-valueIdentityDescription
ENSORLT00000012528.25.991e-4173.8140S ribosomal protein S27 [Source:NCBI gene;Acc:10... [more]
ENSORLT00000000731.25.601e-4074.70pep primary_assembly:ASM223467v1:11:1273496:127416... [more]
ENSORLT00000038315.18.805e-3673.6840S ribosomal protein S27 [Source:NCBI gene;Acc:10... [more]
ENSORLT00000034180.13.477e-2860.5340S ribosomal protein S27-like [Source:NCBI gene;A... [more]
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BLAST of 40S ribosomal protein S27 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000052687.15.121e-58100.00SMESG000052687.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30027979 ID=SMED30027979|Name=40S ribosomal protein S27|organism=Schmidtea mediterranea sexual|type=transcript|length=362bp
GAAATAAATTTGTTTAAATAAATTATTTTACTAATCATAGAAATTTTTGA
TTAATAATAATGCCTTTAGCTATTGACTATTTGCACCCTTCAAAAAAGAG
TGAATTACAAAAATGCAAACTTAAAAGATTAGTCCCATCACCAAACTCAT
ATTTTATGGACGTGAAATGCCCAGGATGTCTGAAAATCAACACTATTTTC
AGCCATGCTCAATCAGTAGTTATGTGCAGCGGTTGCTCCAGACCTCTCTG
TCAGCCAACTGGTGGAAAAGCAAGATTGACCGAAGGATGTTCTTTCAGAA
AGAAGCAAAATTAATAAATTGAATAAAAATTTTGGAATAAGTCTTTTACA
TTTTTATATAAG
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000429neoblast
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR000592Ribosomal_S27e
IPR023407Ribosomal_S27e_Zn-bd_dom
IPR011332Ribosomal_zn-bd
Vocabulary: cellular component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0030529intracellular ribonucleoprotein complex
Vocabulary: biological process
TermDefinition
GO:0006412translation
Vocabulary: molecular function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0046872metal ion binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.20.25.640coord: 1..84
e-value: 7.8E-45
score: 152.8
NoneNo IPR availablePRODOMPD004466coord: 44..82
e-value: 2.0E-13
score: 177.0
IPR000592Ribosomal protein S27ePFAMPF01667Ribosomal_S27ecoord: 28..82
e-value: 1.9E-28
score: 98.0
IPR000592Ribosomal protein S27ePANTHERPTHR1159440S RIBOSOMAL PROTEIN S27coord: 1..84
IPR000592Ribosomal protein S27ePROSITEPS01168RIBOSOMAL_S27Ecoord: 36..68
IPR011332Zinc-binding ribosomal proteinSUPERFAMILYSSF57829Zn-binding ribosomal proteinscoord: 28..82