40S ribosomal protein S27
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30027979 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 9
Homology
BLAST of 40S ribosomal protein S27 vs. Ensembl Human
Match: RPS27L (ribosomal protein S27 like [Source:HGNC Symbol;Acc:HGNC:18476]) HSP 1 Score: 125.176 bits (313), Expect = 3.297e-38 Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 1 MPLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
BLAST of 40S ribosomal protein S27 vs. Ensembl Human
Match: RPS27 (ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:10416]) HSP 1 Score: 122.479 bits (306), Expect = 3.962e-37 Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
BLAST of 40S ribosomal protein S27 vs. Ensembl Human
Match: RPS27L (ribosomal protein S27 like [Source:HGNC Symbol;Acc:HGNC:18476]) HSP 1 Score: 120.939 bits (302), Expect = 2.656e-36 Identity = 62/86 (72.09%), Postives = 70/86 (81.40%), Query Frame = 3 Query: 54 IIMPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 + LA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 15 FFVQLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 100
BLAST of 40S ribosomal protein S27 vs. Ensembl Human
Match: RPS27L (ribosomal protein S27 like [Source:HGNC Symbol;Acc:HGNC:18476]) HSP 1 Score: 114.39 bits (285), Expect = 7.196e-34 Identity = 60/79 (75.95%), Postives = 65/79 (82.28%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSF 296 MPLA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEG SF Sbjct: 1 MPLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGISF 79
BLAST of 40S ribosomal protein S27 vs. Ensembl Human
Match: RPS27L (ribosomal protein S27 like [Source:HGNC Symbol;Acc:HGNC:18476]) HSP 1 Score: 93.2041 bits (230), Expect = 6.550e-26 Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 3 Query: 156 MDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 1 MDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 52
BLAST of 40S ribosomal protein S27 vs. Ensembl Celegans
Match: rps-27 (40S ribosomal protein S27 [Source:UniProtKB/Swiss-Prot;Acc:Q9TXP0]) HSP 1 Score: 123.25 bits (308), Expect = 6.901e-38 Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQ 308 MPLA+D LHP + E++ KLKRLV PNSYFMDVKC GC KI+T+FSHA +VV+C GC+ LCQPT GKA+LTEGCSFRKKQ Sbjct: 1 MPLAVDLLHPEPQREIRCHKLKRLVQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVGCNTVLCQPTRGKAKLTEGCSFRKKQ 83
BLAST of 40S ribosomal protein S27 vs. Ensembl Celegans
Match: rps-27 (40S ribosomal protein S27 [Source:UniProtKB/Swiss-Prot;Acc:Q9TXP0]) HSP 1 Score: 123.25 bits (308), Expect = 6.901e-38 Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQ 308 MPLA+D LHP + E++ KLKRLV PNSYFMDVKC GC KI+T+FSHA +VV+C GC+ LCQPT GKA+LTEGCSFRKKQ Sbjct: 1 MPLAVDLLHPEPQREIRCHKLKRLVQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVGCNTVLCQPTRGKAKLTEGCSFRKKQ 83
BLAST of 40S ribosomal protein S27 vs. Ensembl Fly
Match: RpS27 (gene:FBgn0039300 transcript:FBtr0084868) HSP 1 Score: 124.02 bits (310), Expect = 4.187e-38 Identity = 58/82 (70.73%), Postives = 67/82 (81.71%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKK 305 MPLA D LHP E +K KLKRLV PNSYFMDVKCPGC +I T+FSHAQ VV+C+GC+ LCQPTGG+A+LTEGCSFR+K Sbjct: 1 MPLAKDLLHPLPAEEKRKHKLKRLVQHPNSYFMDVKCPGCYRITTVFSHAQGVVVCAGCATILCQPTGGRAKLTEGCSFRRK 82
BLAST of 40S ribosomal protein S27 vs. Ensembl Fly
Match: RpS27 (gene:FBgn0039300 transcript:FBtr0304693) HSP 1 Score: 124.02 bits (310), Expect = 4.187e-38 Identity = 58/82 (70.73%), Postives = 67/82 (81.71%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKK 305 MPLA D LHP E +K KLKRLV PNSYFMDVKCPGC +I T+FSHAQ VV+C+GC+ LCQPTGG+A+LTEGCSFR+K Sbjct: 1 MPLAKDLLHPLPAEEKRKHKLKRLVQHPNSYFMDVKCPGCYRITTVFSHAQGVVVCAGCATILCQPTGGRAKLTEGCSFRRK 82
BLAST of 40S ribosomal protein S27 vs. Ensembl Zebrafish
Match: rps27.1 (ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]) HSP 1 Score: 132.109 bits (331), Expect = 3.646e-41 Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLA D LHP+ + E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 1 MPLAKDLLHPTPEEERRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
BLAST of 40S ribosomal protein S27 vs. Ensembl Zebrafish
Match: rps27.2 (ribosomal protein S27, isoform 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1735]) HSP 1 Score: 131.724 bits (330), Expect = 4.955e-41 Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLA D LHP+ + E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 1 MPLAKDLLHPTPEEEKRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
BLAST of 40S ribosomal protein S27 vs. Ensembl Zebrafish
Match: rps27l (ribosomal protein S27 like [Source:ZFIN;Acc:ZDB-GENE-060331-65]) HSP 1 Score: 127.102 bits (318), Expect = 3.152e-39 Identity = 61/84 (72.62%), Postives = 70/84 (83.33%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLA D ++PS E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 1 MPLARDLINPSFDLERRQHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
BLAST of 40S ribosomal protein S27 vs. Ensembl Zebrafish
Match: rps27.2 (ribosomal protein S27, isoform 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1735]) HSP 1 Score: 93.2041 bits (230), Expect = 4.167e-26 Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 3 Query: 156 MDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 1 MDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 52
BLAST of 40S ribosomal protein S27 vs. Ensembl Xenopus
Match: rps27l (ribosomal protein S27-like [Source:NCBI gene;Acc:100127556]) HSP 1 Score: 125.176 bits (313), Expect = 4.704e-38 Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 3 Query: 66 LAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 LA D L PS + E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 14 LAKDLLLPSSEEEKRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 95
BLAST of 40S ribosomal protein S27 vs. Ensembl Xenopus
Match: rps27l (ribosomal protein S27-like [Source:NCBI gene;Acc:100127556]) HSP 1 Score: 112.079 bits (279), Expect = 2.607e-32 Identity = 55/77 (71.43%), Postives = 61/77 (79.22%), Query Frame = 3 Query: 66 LAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSF 296 LA D L PS + E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEG S Sbjct: 67 LAKDLLLPSSEEEKRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGISL 143
BLAST of 40S ribosomal protein S27 vs. Ensembl Mouse
Match: Rps27l (ribosomal protein S27-like [Source:MGI Symbol;Acc:MGI:1915191]) HSP 1 Score: 125.176 bits (313), Expect = 2.263e-38 Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 1 MPLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
BLAST of 40S ribosomal protein S27 vs. Ensembl Mouse
Match: Rps27 (ribosomal protein S27 [Source:MGI Symbol;Acc:MGI:1888676]) HSP 1 Score: 122.479 bits (306), Expect = 2.720e-37 Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
BLAST of 40S ribosomal protein S27 vs. Ensembl Mouse
Match: Rps27rt (ribosomal protein S27, retrogene [Source:MGI Symbol;Acc:MGI:3704345]) HSP 1 Score: 122.479 bits (306), Expect = 2.720e-37 Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
BLAST of 40S ribosomal protein S27 vs. Ensembl Mouse
Match: Rps27 (ribosomal protein S27 [Source:MGI Symbol;Acc:MGI:1888676]) HSP 1 Score: 117.857 bits (294), Expect = 1.461e-35 Identity = 62/82 (75.61%), Postives = 69/82 (84.15%), Query Frame = 3 Query: 66 LAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 LA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 1 LAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 82
BLAST of 40S ribosomal protein S27 vs. Ensembl Mouse
Match: Rps27l (ribosomal protein S27-like [Source:MGI Symbol;Acc:MGI:1915191]) HSP 1 Score: 110.538 bits (275), Expect = 2.133e-32 Identity = 59/81 (72.84%), Postives = 64/81 (79.01%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLT-EGCSFR 299 MPLA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLT E C F Sbjct: 1 MPLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEESCEFH 81
BLAST of 40S ribosomal protein S27 vs. UniProt/SwissProt
Match: sp|P55833|RS27_HOMAM (40S ribosomal protein S27 OS=Homarus americanus OX=6706 GN=RPS27 PE=3 SV=2) HSP 1 Score: 135.961 bits (341), Expect = 8.716e-42 Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLA D LHPS E +KCKLKRLV PNSYFMDVKCPGC KI+T+FSHAQ+VV C GC+ LCQPTGGKA+LT+GCSFRKKQN Sbjct: 1 MPLAKDLLHPSPSEEKRKCKLKRLVQHPNSYFMDVKCPGCFKISTVFSHAQTVVACVGCATVLCQPTGGKAKLTDGCSFRKKQN 84
BLAST of 40S ribosomal protein S27 vs. UniProt/SwissProt
Match: sp|Q3T0B7|RS27L_BOVIN (40S ribosomal protein S27-like OS=Bos taurus OX=9913 GN=RPS27L PE=3 SV=3) HSP 1 Score: 128.257 bits (321), Expect = 8.589e-39 Identity = 64/84 (76.19%), Postives = 70/84 (83.33%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLA D LHPS E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 1 MPLARDLLHPSLDEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
BLAST of 40S ribosomal protein S27 vs. UniProt/SwissProt
Match: sp|Q7RVN2|RS27_NEUCR (40S ribosomal protein S27 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=crp-6 PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 7.829e-38 Identity = 58/82 (70.73%), Postives = 68/82 (82.93%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKK 305 M LA+D L+PS SE +K KLK LVP+P S+FMDVKCPGC I T+FSHAQ+VV+C GC+ LCQPTGGKARLTEGCSFR+K Sbjct: 1 MVLAVDLLNPSPASEARKHKLKTLVPAPRSFFMDVKCPGCFTITTVFSHAQTVVICQGCTTVLCQPTGGKARLTEGCSFRRK 82
BLAST of 40S ribosomal protein S27 vs. UniProt/SwissProt
Match: sp|P24051|RS27L_RAT (40S ribosomal protein S27-like OS=Rattus norvegicus OX=10116 GN=Rps27l PE=1 SV=3) HSP 1 Score: 125.176 bits (313), Expect = 1.583e-37 Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 1 MPLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
BLAST of 40S ribosomal protein S27 vs. UniProt/SwissProt
Match: sp|Q6ZWY3|RS27L_MOUSE (40S ribosomal protein S27-like OS=Mus musculus OX=10090 GN=Rps27l PE=1 SV=3) HSP 1 Score: 125.176 bits (313), Expect = 1.583e-37 Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLA D LHPS + E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 1 MPLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
BLAST of 40S ribosomal protein S27 vs. TrEMBL
Match: A0A0B7BKS9 (40S ribosomal protein S27 (Fragment) OS=Arion vulgaris OX=1028688 GN=ORF195597 PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 2.724e-42 Identity = 69/92 (75.00%), Postives = 77/92 (83.70%), Query Frame = 3 Query: 36 HRNF*LIIMPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 +R+F IMPLA D LHPS E ++CKLKRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFRKKQ+ Sbjct: 5 NRSFRSTIMPLAKDLLHPSLDEEKRRCKLKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRKKQH 96
BLAST of 40S ribosomal protein S27 vs. TrEMBL
Match: A0A2C9JGF7 (40S ribosomal protein S27 OS=Biomphalaria glabrata OX=6526 GN=106056007 PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 3.634e-41 Identity = 67/84 (79.76%), Postives = 73/84 (86.90%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLA D LHPS + E +KCKLKRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFRKKQ+ Sbjct: 1 MPLAKDLLHPSLEEEKRKCKLKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRKKQH 84
BLAST of 40S ribosomal protein S27 vs. TrEMBL
Match: A9UDQ6 (40S ribosomal protein S27 OS=Flustra foliacea OX=478208 PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 4.727e-41 Identity = 67/84 (79.76%), Postives = 72/84 (85.71%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLA D LHPS E +KCKLKRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFRKKQ+ Sbjct: 1 MPLAKDLLHPSYDEEKRKCKLKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRKKQH 84
BLAST of 40S ribosomal protein S27 vs. TrEMBL
Match: T1ELX4 (40S ribosomal protein S27 OS=Helobdella robusta OX=6412 GN=20197574 PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 5.392e-41 Identity = 66/84 (78.57%), Postives = 74/84 (88.10%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLA D LHPS++ E +KCKLKRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 1 MPLAKDLLHPSQEEEKRKCKLKRLVQSPNSYFMDVKCPGCYKIMTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
BLAST of 40S ribosomal protein S27 vs. TrEMBL
Match: A8UAH9 (40S ribosomal protein S27 OS=Barentsia elongata OX=478378 PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 5.633e-41 Identity = 66/84 (78.57%), Postives = 73/84 (86.90%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLA D LHPS + E +KCKLKRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 1 MPLAKDLLHPSYEEEKRKCKLKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
BLAST of 40S ribosomal protein S27 vs. Ensembl Cavefish
Match: rps27l (40S ribosomal protein S27-like [Source:NCBI gene;Acc:103041134]) HSP 1 Score: 131.339 bits (329), Expect = 6.368e-41 Identity = 63/84 (75.00%), Postives = 71/84 (84.52%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLAID L+PS E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 1 MPLAIDLLNPSFDLERRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
BLAST of 40S ribosomal protein S27 vs. Ensembl Cavefish
Match: ENSAMXT00000001947.2 (40S ribosomal protein S27 [Source:NCBI gene;Acc:103046684]) HSP 1 Score: 130.183 bits (326), Expect = 1.564e-40 Identity = 62/84 (73.81%), Postives = 70/84 (83.33%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLA D LHP + E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 1 MPLAKDLLHPPPEEERRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
BLAST of 40S ribosomal protein S27 vs. Ensembl Cavefish
Match: ENSAMXT00000052931.1 (40S ribosomal protein S27-like [Source:NCBI gene;Acc:103044954]) HSP 1 Score: 130.954 bits (328), Expect = 1.744e-40 Identity = 61/86 (70.93%), Postives = 71/86 (82.56%), Query Frame = 3 Query: 54 IIMPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLA D+LHP+ + E ++ K KRLV PNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 16 FTMPLAKDFLHPTPEEERRRHKKKRLVQCPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 101
BLAST of 40S ribosomal protein S27 vs. Ensembl Cavefish
Match: ENSAMXT00000037048.1 (40S ribosomal protein S27 [Source:NCBI gene;Acc:103046684]) HSP 1 Score: 117.857 bits (294), Expect = 1.766e-35 Identity = 56/76 (73.68%), Postives = 62/76 (81.58%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEG 287 MPLA D LHP + E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEG Sbjct: 1 MPLAKDLLHPPPEEERRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEG 76
BLAST of 40S ribosomal protein S27 vs. Ensembl Sea Lamprey
Match: rps27l (ribosomal protein S27 like [Source:ZFIN;Acc:ZDB-GENE-060331-65]) HSP 1 Score: 130.568 bits (327), Expect = 2.412e-41 Identity = 63/84 (75.00%), Postives = 71/84 (84.52%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLA D LHPS ++E + K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 1 MPLAKDLLHPSLEAERRCHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
BLAST of 40S ribosomal protein S27 vs. Ensembl Sea Lamprey
Match: RPS27L (ribosomal protein S27 like [Source:HGNC Symbol;Acc:HGNC:18476]) HSP 1 Score: 122.479 bits (306), Expect = 4.102e-38 Identity = 64/84 (76.19%), Postives = 70/84 (83.33%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLA D LHPS E +K K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 1 MPLAKDLLHPSLVEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
BLAST of 40S ribosomal protein S27 vs. Ensembl Yeast
Match: RPS27B (Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S27, no bacterial homolog; RPS27B has a paralog, RPS27A, that arose from the whole genome duplication [Source:SGD;Acc:S000001063]) HSP 1 Score: 111.309 bits (277), Expect = 5.437e-34 Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKK 305 M L D LHP+ SE +K KLK LV P SYF+DVKCPGCL I T+FSHAQ+ V C CS LC PTGGKA+L+EG SFR+K Sbjct: 1 MVLVQDLLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTPTGGKAKLSEGTSFRRK 82
BLAST of 40S ribosomal protein S27 vs. Ensembl Yeast
Match: RPS27A (Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S27, no bacterial homolog; RPS27A has a paralog, RPS27B, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000001639]) HSP 1 Score: 111.309 bits (277), Expect = 6.478e-34 Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKK 305 M L D LHP+ SE +K KLK LV P SYF+DVKCPGCL I T+FSHAQ+ V C CS LC PTGGKA+L+EG SFR+K Sbjct: 1 MVLVQDLLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTILCTPTGGKAKLSEGTSFRRK 82
BLAST of 40S ribosomal protein S27 vs. Ensembl Nematostella
Match: EDO41437 (40S ribosomal protein S27 [Source:UniProtKB/TrEMBL;Acc:A7S494]) HSP 1 Score: 123.635 bits (309), Expect = 2.416e-38 Identity = 59/84 (70.24%), Postives = 68/84 (80.95%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPL D L+ + E ++ KLKRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C CS LCQPTGG+ARLTEGCSFR+KQN Sbjct: 1 MPLFKDLLNVNPIEEKRRHKLKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVACSMVLCQPTGGRARLTEGCSFRRKQN 84
BLAST of 40S ribosomal protein S27 vs. Ensembl Medaka
Match: ENSORLT00000012528.2 (40S ribosomal protein S27 [Source:NCBI gene;Acc:101156845]) HSP 1 Score: 131.339 bits (329), Expect = 5.991e-41 Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLA D LHP+ + E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 1 MPLAKDLLHPTPEVERRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
BLAST of 40S ribosomal protein S27 vs. Ensembl Medaka
Match: ENSORLT00000000731.2 (pep primary_assembly:ASM223467v1:11:1273496:1274162:-1 gene:ENSORLG00000000594.2 transcript:ENSORLT00000000731.2 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 129.028 bits (323), Expect = 5.601e-40 Identity = 62/83 (74.70%), Postives = 70/83 (84.34%), Query Frame = 3 Query: 63 PLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 PLA D LHPS + E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEGCSFR+KQ+ Sbjct: 5 PLAKDLLHPSPEEEKRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 87
BLAST of 40S ribosomal protein S27 vs. Ensembl Medaka
Match: ENSORLT00000038315.1 (40S ribosomal protein S27 [Source:NCBI gene;Acc:101156845]) HSP 1 Score: 118.242 bits (295), Expect = 8.805e-36 Identity = 56/76 (73.68%), Postives = 63/76 (82.89%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEG 287 MPLA D LHP+ + E ++ K KRLV SPNSYFMDVKCPGC KI T+FSHAQ+VV+C GCS LCQPTGGKARLTEG Sbjct: 1 MPLAKDLLHPTPEVERRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEG 76
BLAST of 40S ribosomal protein S27 vs. Ensembl Medaka
Match: ENSORLT00000034180.1 (40S ribosomal protein S27-like [Source:NCBI gene;Acc:101161046]) HSP 1 Score: 99.7525 bits (247), Expect = 3.477e-28 Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEG 287 M LA D +HPS E+++ K KRLV SPNS+FMDVKC GC +I T+FSHAQ+ V+C GCS LC P+GGK R+T G Sbjct: 1 MSLAKDLMHPSLAEEMRRHKKKRLVQSPNSFFMDVKCLGCYRITTVFSHAQTAVVCPGCSVVLCSPSGGKCRVTSG 76
BLAST of 40S ribosomal protein S27 vs. Planmine SMEST
Match: SMESG000052687.1 (SMESG000052687.1) HSP 1 Score: 174.096 bits (440), Expect = 5.121e-58 Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 3 Query: 60 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 311 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN Sbjct: 1 MPLAIDYLHPSKKSELQKCKLKRLVPSPNSYFMDVKCPGCLKINTIFSHAQSVVMCSGCSRPLCQPTGGKARLTEGCSFRKKQN 84 The following BLAST results are available for this feature:
BLAST of 40S ribosomal protein S27 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of 40S ribosomal protein S27 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 2
BLAST of 40S ribosomal protein S27 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of 40S ribosomal protein S27 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 4
BLAST of 40S ribosomal protein S27 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of 40S ribosomal protein S27 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of 40S ribosomal protein S27 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of 40S ribosomal protein S27 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of 40S ribosomal protein S27 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 4
BLAST of 40S ribosomal protein S27 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of 40S ribosomal protein S27 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 2
BLAST of 40S ribosomal protein S27 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of 40S ribosomal protein S27 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 4
BLAST of 40S ribosomal protein S27 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30027979 ID=SMED30027979|Name=40S ribosomal protein S27|organism=Schmidtea mediterranea sexual|type=transcript|length=362bpback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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