DNA-directed RNA polymerases I, II, and III subunit RPABC2
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30027916 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Homology
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Human
Match: POLR2F (RNA polymerase II subunit F [Source:HGNC Symbol;Acc:HGNC:9193]) HSP 1 Score: 128.257 bits (321), Expect = 3.577e-38 Identity = 65/115 (56.52%), Postives = 80/115 (69.57%), Query Frame = 2 Query: 137 LSDDEKMDTAEQDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 L D E + Q+N ++ SG + KR TTPY+TKYERARVLGTRALQI++CAP+MVEL+ E DPL IA KEL+A KIP IIRR+LP G+YEDW V+ELI+ D Sbjct: 17 LDDLENAEEEGQENVEILPSGE---------RPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 122
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Human
Match: POLR2F (RNA polymerase II subunit F [Source:HGNC Symbol;Acc:HGNC:9193]) HSP 1 Score: 128.257 bits (321), Expect = 4.533e-38 Identity = 65/115 (56.52%), Postives = 80/115 (69.57%), Query Frame = 2 Query: 137 LSDDEKMDTAEQDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 L D E + Q+N ++ SG + KR TTPY+TKYERARVLGTRALQI++CAP+MVEL+ E DPL IA KEL+A KIP IIRR+LP G+YEDW V+ELI+ D Sbjct: 22 LDDLENAEEEGQENVEILPSGE---------RPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Human
Match: POLR2F (RNA polymerase II subunit F [Source:HGNC Symbol;Acc:HGNC:9193]) HSP 1 Score: 118.627 bits (296), Expect = 1.906e-34 Identity = 58/98 (59.18%), Postives = 71/98 (72.45%), Query Frame = 2 Query: 170 QDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVE 463 Q+N ++ SG + KR TTPY+TKYERARVLGTRALQI++CAP+MVEL+ E DPL IA KEL+A KIP IIRR+LP G+YEDW V+ Sbjct: 24 QENVEILPSGE---------RPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVD 112
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Human
Match: POLR2F (RNA polymerase II subunit F [Source:HGNC Symbol;Acc:HGNC:9193]) HSP 1 Score: 85.1149 bits (209), Expect = 1.262e-21 Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 2 Query: 137 LSDDEKMDTAEQDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELR 394 L D E + Q+N ++ SG + KR TTPY+TKYERARVLGTRALQI++CAP+MVEL+ E DPL IA KEL+ Sbjct: 22 LDDLENAEEEGQENVEILPSGE---------RPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELK 98
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Human
Match: POLR2F (RNA polymerase II subunit F [Source:HGNC Symbol;Acc:HGNC:9193]) HSP 1 Score: 85.5001 bits (210), Expect = 1.959e-21 Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 2 Query: 137 LSDDEKMDTAEQDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELR 394 L D E + Q+N ++ SG + KR TTPY+TKYERARVLGTRALQI++CAP+MVEL+ E DPL IA KEL+ Sbjct: 22 LDDLENAEEEGQENVEILPSGE---------RPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELK 98
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Celegans
Match: rpb-6 (Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Source:UniProtKB/Swiss-Prot;Acc:Q17684]) HSP 1 Score: 116.701 bits (291), Expect = 6.156e-34 Identity = 54/88 (61.36%), Postives = 69/88 (78.41%), Query Frame = 2 Query: 218 ISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 Q KAV S+ TTP++TKYERARVLGTRALQI++ AP+MVEL+ E DPL+IA KEL+ +IP I+RR+LP G+YEDW ++L L D Sbjct: 49 FDQGKAVPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIVRRYLPDGSYEDWPTDQLQLAD 136
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Fly
Match: RpII18 (gene:FBgn0003275 transcript:FBtr0078787) HSP 1 Score: 126.716 bits (317), Expect = 9.445e-38 Identity = 58/82 (70.73%), Postives = 69/82 (84.15%), Query Frame = 2 Query: 236 VEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 V SKR TT Y+TKYERARVLGTRALQI++CAPIMVELD E DPL+IA KEL+ KIP IIRR+LP +YEDW ++ELI++D Sbjct: 49 VPKSKRITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDWSIDELIMVD 130
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Zebrafish
Match: polr2f (polymerase (RNA) II (DNA directed) polypeptide F [Source:ZFIN;Acc:ZDB-GENE-040718-279]) HSP 1 Score: 126.331 bits (316), Expect = 1.597e-37 Identity = 62/115 (53.91%), Postives = 82/115 (71.30%), Query Frame = 2 Query: 137 LSDDEKMDTAEQDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 L D E ++ +Q+N ++ +G Q + KR TT Y+TKYERARVLGTRALQI++CAP+MVEL+ E DPL+IA KEL++ KIP IIRR+LP G+YEDW +ELI+ D Sbjct: 29 LDDLENVEDEDQENVQILPAGEGQQAN---------QKRITTQYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYLPDGSYEDWGCDELIITD 134
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Zebrafish
Match: polr2f (polymerase (RNA) II (DNA directed) polypeptide F [Source:ZFIN;Acc:ZDB-GENE-040718-279]) HSP 1 Score: 126.331 bits (316), Expect = 1.612e-37 Identity = 62/115 (53.91%), Postives = 82/115 (71.30%), Query Frame = 2 Query: 137 LSDDEKMDTAEQDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 L D E ++ +Q+N ++ +G Q + KR TT Y+TKYERARVLGTRALQI++CAP+MVEL+ E DPL+IA KEL++ KIP IIRR+LP G+YEDW +ELI+ D Sbjct: 22 LDDLENVEDEDQENVQILPAGEGQQAN---------QKRITTQYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYLPDGSYEDWGCDELIITD 127
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Xenopus
Match: polr2f (polymerase (RNA) II subunit F [Source:NCBI gene;Acc:448728]) HSP 1 Score: 125.946 bits (315), Expect = 3.513e-37 Identity = 65/112 (58.04%), Postives = 82/112 (73.21%), Query Frame = 2 Query: 149 EKMDTAEQ-DNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 + +D AE+ D NV + A + + +Q KR TT Y+TKYERARVLGTRALQI++CAP+MVEL+ E DPL IA KEL+A KIP IIRR+LP G+YEDW V+ELI+ D Sbjct: 23 DDLDNAEEEDQENVAILPAGEGQQANQ-------KRITTNYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Mouse
Match: Polr2f (polymerase (RNA) II (DNA directed) polypeptide F [Source:MGI Symbol;Acc:MGI:1349393]) HSP 1 Score: 127.487 bits (319), Expect = 5.983e-38 Identity = 65/115 (56.52%), Postives = 80/115 (69.57%), Query Frame = 2 Query: 137 LSDDEKMDTAEQDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 L D E + Q+N ++ SG + KR TTPY+TKYERARVLGTRALQI++CAP+MVEL+ E DPL IA KEL+A KIP IIRR+LP G+YEDW V+ELI+ D Sbjct: 22 LDDLENAEEEGQENVEILPSGE---------RPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Mouse
Match: Polr2f (polymerase (RNA) II (DNA directed) polypeptide F [Source:MGI Symbol;Acc:MGI:1349393]) HSP 1 Score: 88.9669 bits (219), Expect = 4.091e-23 Identity = 51/115 (44.35%), Postives = 65/115 (56.52%), Query Frame = 2 Query: 137 LSDDEKMDTAEQDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 L D E + Q+N ++ SG + KR TTPY+TK +CAP+MVEL+ E DPL IA KEL+A KIP IIRR+LP G+YEDW V+ELI+ D Sbjct: 22 LDDLENAEEEGQENVEILPSGE---------RPQANQKRITTPYMTK---------------MCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 112
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Mouse
Match: Polr2f (polymerase (RNA) II (DNA directed) polypeptide F [Source:MGI Symbol;Acc:MGI:1349393]) HSP 1 Score: 85.1149 bits (209), Expect = 8.665e-22 Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 2 Query: 137 LSDDEKMDTAEQDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELR 394 L D E + Q+N ++ SG + KR TTPY+TKYERARVLGTRALQI++CAP+MVEL+ E DPL IA KEL+ Sbjct: 22 LDDLENAEEEGQENVEILPSGE---------RPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELK 98
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. UniProt/SwissProt
Match: sp|Q5R592|RPAB2_PONAB (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Pongo abelii OX=9601 GN=POLR2F PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 2.177e-37 Identity = 65/115 (56.52%), Postives = 80/115 (69.57%), Query Frame = 2 Query: 137 LSDDEKMDTAEQDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 L D E + Q+N ++ SG + KR TTPY+TKYERARVLGTRALQI++CAP+MVEL+ E DPL IA KEL+A KIP IIRR+LP G+YEDW V+ELI+ D Sbjct: 22 LDDLENAEEEGQENVEILPSGE---------RPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. UniProt/SwissProt
Match: sp|P61218|RPAB2_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Homo sapiens OX=9606 GN=POLR2F PE=1 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 2.177e-37 Identity = 65/115 (56.52%), Postives = 80/115 (69.57%), Query Frame = 2 Query: 137 LSDDEKMDTAEQDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 L D E + Q+N ++ SG + KR TTPY+TKYERARVLGTRALQI++CAP+MVEL+ E DPL IA KEL+A KIP IIRR+LP G+YEDW V+ELI+ D Sbjct: 22 LDDLENAEEEGQENVEILPSGE---------RPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. UniProt/SwissProt
Match: sp|P61217|RPAB2_CRIGR (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Cricetulus griseus OX=10029 GN=POLR2F PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 2.177e-37 Identity = 65/115 (56.52%), Postives = 80/115 (69.57%), Query Frame = 2 Query: 137 LSDDEKMDTAEQDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 L D E + Q+N ++ SG + KR TTPY+TKYERARVLGTRALQI++CAP+MVEL+ E DPL IA KEL+A KIP IIRR+LP G+YEDW V+ELI+ D Sbjct: 22 LDDLENAEEEGQENVEILPSGE---------RPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. UniProt/SwissProt
Match: sp|O88828|RPAB2_RAT (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus OX=10116 GN=Polr2f PE=1 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 4.185e-37 Identity = 65/115 (56.52%), Postives = 80/115 (69.57%), Query Frame = 2 Query: 137 LSDDEKMDTAEQDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 L D E + Q+N ++ SG + KR TTPY+TKYERARVLGTRALQI++CAP+MVEL+ E DPL IA KEL+A KIP IIRR+LP G+YEDW V+ELI+ D Sbjct: 22 LDDLENAEEEGQENVEILPSGE---------RPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. UniProt/SwissProt
Match: sp|P61219|RPAB2_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus musculus OX=10090 GN=Polr2f PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 4.185e-37 Identity = 65/115 (56.52%), Postives = 80/115 (69.57%), Query Frame = 2 Query: 137 LSDDEKMDTAEQDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 L D E + Q+N ++ SG + KR TTPY+TKYERARVLGTRALQI++CAP+MVEL+ E DPL IA KEL+A KIP IIRR+LP G+YEDW V+ELI+ D Sbjct: 22 LDDLENAEEEGQENVEILPSGE---------RPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. TrEMBL
Match: Q5D946 (SJCHGC05009 protein OS=Schistosoma japonicum OX=6182 PE=2 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 3.704e-39 Identity = 72/121 (59.50%), Postives = 88/121 (72.73%), Query Frame = 2 Query: 140 SDDEKMDTAEQDNSNVIMSGATQV--KDISQLKA-------VEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELIL 475 SD+E +D D+ + G T + ++ +L + VE SKR TTPYLTKYERARVLG RALQ+S+ AP+MVELD ERDPLKIAEKELRA KIP IIRRFLP G++EDW ++ELIL Sbjct: 13 SDEEPLDEVPDDDLDTKPDGVTYITTDEVPRLSSGQSLAAPVEKSKRITTPYLTKYERARVLGARALQLSMSAPVMVELDGERDPLKIAEKELRANKIPIIIRRFLPDGSFEDWSLDELIL 133
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. TrEMBL
Match: A0A183S126 (Uncharacterized protein OS=Schistosoma rodhaini OX=6188 PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 4.372e-39 Identity = 68/112 (60.71%), Postives = 84/112 (75.00%), Query Frame = 2 Query: 146 DEKMDTAEQDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 +E +DT + + + A ++ + VE SKR TTPYLTKYERARVLG RALQ+S+ AP+MVELD ERDPLKIAEKELRA KIP IIRRFLP G++EDW ++ELIL + Sbjct: 23 EEDLDTKPEGVTYITADEAPRLSGQNMAAPVEKSKRVTTPYLTKYERARVLGARALQLSMSAPVMVELDGERDPLKIAEKELRANKIPIIIRRFLPDGSFEDWSLDELILTE 134
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. TrEMBL
Match: A0A183MM82 (Uncharacterized protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS17157 PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 6.988e-39 Identity = 68/112 (60.71%), Postives = 84/112 (75.00%), Query Frame = 2 Query: 146 DEKMDTAEQDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 +E +DT + + + A ++ + VE SKR TTPYLTKYERARVLG RALQ+S+ AP+MVELD ERDPLKIAEKELRA KIP IIRRFLP G++EDW ++ELIL + Sbjct: 23 EEDLDTKPEGVTYITADEAPRLSGQNMAAPVEKSKRITTPYLTKYERARVLGARALQLSMSAPVMVELDGERDPLKIAEKELRANKIPIIIRRFLPDGSFEDWSLDELILTE 134
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. TrEMBL
Match: A0A430QPC4 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Schistosoma bovis OX=6184 GN=DC041_0005789 PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.954e-38 Identity = 64/82 (78.05%), Postives = 72/82 (87.80%), Query Frame = 2 Query: 236 VEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 VE SKR TTPYLTKYERARVLG RALQ+S+ AP+MVELD ERDPLKIAEKELRA KIP IIRRFLP G++EDW ++ELIL + Sbjct: 5 VEKSKRITTPYLTKYERARVLGARALQLSMSAPVMVELDGERDPLKIAEKELRANKIPIIIRRFLPDGSFEDWSLDELILTE 86
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. TrEMBL
Match: G4V787 (Putative DNA-directed rna polymerase subunit rpb6 OS=Schistosoma mansoni OX=6183 GN=Smp_073570 PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 2.079e-38 Identity = 67/112 (59.82%), Postives = 83/112 (74.11%), Query Frame = 2 Query: 146 DEKMDTAEQDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 +E +DT + + + ++ + VE SKR TTPYLTKYERARVLG RALQ+S+ AP+MVELD ERDPLKIAEKELRA KIP IIRRFLP G++EDW ++ELIL + Sbjct: 23 EEDLDTKPEGVTYITADETPRLSGQNMAAPVEKSKRVTTPYLTKYERARVLGARALQLSMSAPVMVELDGERDPLKIAEKELRANKIPIIIRRFLPDGSFEDWSLDELILTE 134
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Cavefish
Match: POLR2F (RNA polymerase II subunit F [Source:NCBI gene;Acc:103036223]) HSP 1 Score: 129.413 bits (324), Expect = 9.166e-39 Identity = 63/115 (54.78%), Postives = 83/115 (72.17%), Query Frame = 2 Query: 137 LSDDEKMDTAEQDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 L D E ++ +Q+N ++ +G Q + KR TTPY+TKYERARVLGTRALQI++CAP+MVEL+ E DPL+IA KEL++ KIP IIRR+LP G+YEDW +ELI+ D Sbjct: 22 LDDLENVEDEDQENVQILPAGEGQQAN---------QKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYLPDGSYEDWGCDELIISD 127
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Yeast
Match: RPO26 (RNA polymerase subunit ABC23; common to RNA polymerases I, II, and III; part of central core; similar to bacterial omega subunit [Source:SGD;Acc:S000006391]) HSP 1 Score: 122.094 bits (305), Expect = 1.700e-36 Identity = 58/110 (52.73%), Postives = 76/110 (69.09%), Query Frame = 2 Query: 176 NSNVIMSGATQVKDISQL----------KAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELIL 475 N I++G +D Q KA+ +R+TTPY+TKYERAR+LGTRALQIS+ AP+ V+L+ E DPL+IA KEL KIP +IRR+LP G++EDW VEELI+ Sbjct: 44 NGKTIVTGGNGPEDFQQHEQIRRKTLKEKAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIV 153
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Nematostella
Match: EDO31295 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SYA5]) HSP 1 Score: 108.612 bits (270), Expect = 8.908e-32 Identity = 50/71 (70.42%), Postives = 62/71 (87.32%), Query Frame = 2 Query: 269 LTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 +TKYERARVLGTRALQIS+ AP+MVEL+ E DPL+IA KEL+A KIP IIRR+LP G++EDW ++ELI+ D Sbjct: 1 MTKYERARVLGTRALQISMGAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDGSHEDWGIDELIVTD 71
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Medaka
Match: polr2f (RNA polymerase II subunit F [Source:NCBI gene;Acc:101154870]) HSP 1 Score: 127.872 bits (320), Expect = 3.634e-38 Identity = 62/115 (53.91%), Postives = 83/115 (72.17%), Query Frame = 2 Query: 137 LSDDEKMDTAEQDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 L D E ++ +Q+N ++ +G Q + KR TTP++TKYERARVLGTRALQI++CAP+MVEL+ E DPL+IA KEL++ KIP IIRR+LP G+YEDW +ELI+ D Sbjct: 22 LDDLENVEDEDQENVQILPAGEGQQAN---------QKRITTPHMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYLPDGSYEDWGCDELIITD 127
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Planmine SMEST
Match: SMESG000043360.1 (SMESG000043360.1) HSP 1 Score: 233.417 bits (594), Expect = 5.790e-80 Identity = 113/115 (98.26%), Postives = 115/115 (100.00%), Query Frame = 2 Query: 137 LSDDEKMDTAEQDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 LSDDEKMDTA+QDNSNVIMSGATQVKD+SQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID Sbjct: 16 LSDDEKMDTADQDNSNVIMSGATQVKDVSQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 130
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Planmine SMEST
Match: SMESG000043366.1 (SMESG000043366.1) HSP 1 Score: 226.868 bits (577), Expect = 2.063e-77 Identity = 108/115 (93.91%), Postives = 113/115 (98.26%), Query Frame = 2 Query: 137 LSDDEKMDTAEQDNSNVIMSGATQVKDISQLKAVEGSKRSTTPYLTKYERARVLGTRALQISLCAPIMVELDSERDPLKIAEKELRAGKIPFIIRRFLPGGTYEDWKVEELILID 481 LSDDEKMDTA+ DNSN+IMSGATQVKD+SQLKAVEGSKRSTTPY+TKYERARVLGTRALQISLCAPIMVELD ERDPLKIAEKELRAGKIPFIIRR+LPGGTYEDWKVEELILID Sbjct: 16 LSDDEKMDTADHDNSNLIMSGATQVKDVSQLKAVEGSKRSTTPYMTKYERARVLGTRALQISLCAPIMVELDGERDPLKIAEKELRAGKIPFIIRRYLPGGTYEDWKVEELILID 130 The following BLAST results are available for this feature:
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 3
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of DNA-directed RNA polymerases I, II, and III subunit RPABC2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30027916 ID=SMED30027916|Name=DNA-directed RNA polymerases I, II, and III subunit RPABC2|organism=Schmidtea mediterranea sexual|type=transcript|length=510bpback to top protein sequence of SMED30027916-orf-1 >SMED30027916-orf-1 ID=SMED30027916-orf-1|Name=SMED30027916-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=131bp MDYEVYDEYEENNCELSDDEKMDTAEQDNSNVIMSGATQVKDISQLKAVEback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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