Si:ch211-163l21.7

Overview


Name	Si:ch211-163l21.7
Smed ID	SMED30027818
Length (bp)	700

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Si:ch211-163l21.7 (SMED30027818) t-SNE clustered cells

Violin plots show distribution of expression levels for Si:ch211-163l21.7 (SMED30027818) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Si:ch211-163l21.7 (SMED30027818) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Si:ch211-163l21.7 (SMED30027818) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30027818

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 15

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
head region	SMED30027818	SMESG000026490.1	SmedASXL_019201	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
pharynx	SMED30027818	SMESG000026490.1	dd_Smed_v4_3833_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
protonephridia	SMED30027818	SMESG000026490.1	dd_Smed_v4_3833_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30027818	SMESG000026490.1	dd_Smed_v4_3833_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30027818	SMESG000026490.1	dd_Smed_v4_3833_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30027818	SMESG000026490.1	dd_Smed_v4_3833_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neuron	SMED30027818	SMESG000026490.1	dd_Smed_v4_3833_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cilated neuron	SMED30027818	SMESG000026490.1	dd_Smed_v4_3833_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30027818	SMESG000026490.1	Contig50846	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30027818	SMESG000026490.1	Contig50846	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
head region	SMED30027818	SMESG000026490.1	dd_Smed_v6_3833_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
head region	SMED30027818	SMESG000026490.1	OX_Smed_1.0.21621	ox_Smed_v2	PMID:24238224 Kao et al., 2013
epidermis	SMED30027818	SMESG000026490.1	dd_Smed_v4_3833_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017
ventral epidermis	SMED30027818	SMESG000026490.1	dd_Smed_v4_3833_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017
ciliated epithelial cell	SMED30027818	SMESG000026490.1	dd_Smed_v4_3833_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Homology

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BLAST of Si:ch211-163l21.7 vs. Ensembl Human
Match: C1orf194 (chromosome 1 open reading frame 194 [Source:HGNC Symbol;Acc:HGNC:32331])

HSP 1 Score: 103.219 bits (256), Expect = 5.824e-27
Identity = 63/170 (37.06%), Postives = 94/170 (55.29%), Query Frame = 3

Query:   81 RDPFPLEKFENDKAFTGALQEQKK-NFSKPTHLAQNEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPET---LYPEQC---GRVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVFTS 569
            RDPF     +ND ++ G L+  KK  +  PTHLAQ ++PW+RL    T++S+R +A  +DP  P D+LDF+L  LYN H+  FK++++I+   +T    Y  +    G  L     P+          +R     KKES  +++  I S HT  TN G+SRK DGG F++
Sbjct:    5 RDPFQQPTLDNDDSYLGELRASKKLPYKNPTHLAQQQEPWSRLNSTPTITSMRRDAYYFDPEIPKDDLDFRLAALYNHHTGTFKNKSEILLNQKTTQDTYRTKIQFPGEFLTPPTPPI-----TFLANIRHWINPKKESIHSIQGSIVSPHTAATNGGYSRKKDGGFFST 169

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BLAST of Si:ch211-163l21.7 vs. Ensembl Human
Match: C1orf194 (chromosome 1 open reading frame 194 [Source:HGNC Symbol;Acc:HGNC:32331])

HSP 1 Score: 89.3521 bits (220), Expect = 7.344e-22
Identity = 53/144 (36.81%), Postives = 80/144 (55.56%), Query Frame = 3

Query:  156 FSKPTHLAQNEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPET---LYPEQC---GRVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVFTS 569
            +  PTHLAQ ++PW+RL    T++S+R +A  +DP  P D+LDF+L  LYN H+  FK++++I+   +T    Y  +    G  L     P+          +R     KKES  +++  I S HT  TN G+SRK DGG F++
Sbjct:   19 YKNPTHLAQQQEPWSRLNSTPTITSMRRDAYYFDPEIPKDDLDFRLAALYNHHTGTFKNKSEILLNQKTTQDTYRTKIQFPGEFLTPPTPPI-----TFLANIRHWINPKKESIHSIQGSIVSPHTAATNGGYSRKKDGGFFST 157

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BLAST of Si:ch211-163l21.7 vs. Ensembl Human
Match: C1orf194 (chromosome 1 open reading frame 194 [Source:HGNC Symbol;Acc:HGNC:32331])

HSP 1 Score: 54.299 bits (129), Expect = 5.421e-9
Identity = 37/107 (34.58%), Postives = 55/107 (51.40%), Query Frame = 3

Query:  267 PSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETL---YPEQC---GRVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVFTS 569
            P D+LDF+L  LYN H+  FK++++I+   +T    Y  +    G  L     P+          +R     KKES  +++  I S HT  TN G+SRK DGG F++
Sbjct:   29 PKDDLDFRLAALYNHHTGTFKNKSEILLNQKTTQDTYRTKIQFPGEFLTPPTPPI-----TFLANIRHWINPKKESIHSIQGSIVSPHTAATNGGYSRKKDGGFFST 130

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BLAST of Si:ch211-163l21.7 vs. Ensembl Fly
Match: CG5435 (gene:FBgn0032431 transcript:FBtr0345613)

HSP 1 Score: 60.077 bits (144), Expect = 6.007e-11
Identity = 46/151 (30.46%), Postives = 69/151 (45.70%), Query Frame = 3

Query:  162 KPTHLAQNEDPWNRLAYDGTLSSIRHEAT-QYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETL----------YPEQCG------RVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVF 563
            KP     + +P+ RL Y  T++S+R     + +P  P D LDF L++ Y+     F D+   + Q ET             ++ G      RVL+N     ++++  L HPLRI    +K  P +VK      H Q  N GFSR+   G F
Sbjct:   39 KPGTWHGHLEPYQRLFYHQTMNSVRSSKRYRANPNIPKDTLDFSLQSRYDHTREAFPDKVDYVMQRETCRAISSWSAPGAAKEIGSQLKSFRVLRNTRFIRRKQEDVLGHPLRIGGCKEKIHPHSVKLICSGVHNQLVNNGFSRQTSDGNF 189

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BLAST of Si:ch211-163l21.7 vs. Ensembl Fly
Match: CG5435 (gene:FBgn0032431 transcript:FBtr0080387)

HSP 1 Score: 60.077 bits (144), Expect = 6.007e-11
Identity = 46/151 (30.46%), Postives = 69/151 (45.70%), Query Frame = 3

Query:  162 KPTHLAQNEDPWNRLAYDGTLSSIRHEAT-QYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETL----------YPEQCG------RVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVF 563
            KP     + +P+ RL Y  T++S+R     + +P  P D LDF L++ Y+     F D+   + Q ET             ++ G      RVL+N     ++++  L HPLRI    +K  P +VK      H Q  N GFSR+   G F
Sbjct:   39 KPGTWHGHLEPYQRLFYHQTMNSVRSSKRYRANPNIPKDTLDFSLQSRYDHTREAFPDKVDYVMQRETCRAISSWSAPGAAKEIGSQLKSFRVLRNTRFIRRKQEDVLGHPLRIGGCKEKIHPHSVKLICSGVHNQLVNNGFSRQTSDGNF 189

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BLAST of Si:ch211-163l21.7 vs. Ensembl Zebrafish
Match: si:ch211-163l21.7 (si:ch211-163l21.7 [Source:NCBI gene;Acc:567726])

HSP 1 Score: 121.709 bits (304), Expect = 2.202e-34
Identity = 65/163 (39.88%), Postives = 95/163 (58.28%), Query Frame = 3

Query:   81 RDPFPLEKFENDKAFTGALQEQKKNFSKPTHLAQNEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETLYPEQCGRVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVFTS 569
            RDPFP  ++END   TG  + QK +  KPTHLAQN++PW RL    T +S R     YD   P D+LD  LK  Y+ H  LF++++Q + Q ET+  +   +  K     V +   A N  +++   ++K S +++K  I SHHT  TNRG+SRK DGG +++
Sbjct:    5 RDPFPFPRYENDFTLTGRKEIQKLSDDKPTHLAQNDEPWRRLHNTTTEASSRRTVFHYDTTTPKDSLDIHLKAAYDHHLGLFQNKSQTVMQMETVGADNGTKKNKELEDSVCD---AENKGIKVWVDTQKASLYSIKGSIESHHTASTNRGYSRKHDGGFYST 164

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BLAST of Si:ch211-163l21.7 vs. Ensembl Xenopus
Match: naxd (NAD(P)HX dehydratase [Source:Xenbase;Acc:XB-GENE-982726])

HSP 1 Score: 138.658 bits (348), Expect = 8.294e-41
Identity = 74/164 (45.12%), Postives = 103/164 (62.80%), Query Frame = 3

Query:   81 RDPFPLEKFENDKAFTGALQEQKKNFSKPTHLAQNEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETLYPEQCGRVLKNRYK--PVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVFT 566
            RDP+P  ++END  F G  + Q+    K  +L Q EDPW RL    TLSS R     YDP APSD+LDF LK+LY+ H+ L KD+N+ ++QPETL  E  GR+LKNR K  PV +E+    H ++   + ++ + +++   I SHH   TNRG+SRK DGG ++
Sbjct:    5 RDPYPFTRYENDDTFQGK-EIQRTTGRKSHNLPQKEDPWYRLNSTATLSSDRRAVYYYDPEAPSDSLDFTLKSLYDHHNGLLKDRNETLYQPETL-TESHGRILKNRVKEIPVSQEEI---HSVKQWVSPQRANMYSINGAIVSHHAAATNRGYSRKQDGGYYS 163

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BLAST of Si:ch211-163l21.7 vs. Ensembl Mouse
Match: 1700013F07Rik (RIKEN cDNA 1700013F07 gene [Source:MGI Symbol;Acc:MGI:1922754])

HSP 1 Score: 90.1225 bits (222), Expect = 4.525e-22
Identity = 60/174 (34.48%), Postives = 87/174 (50.00%), Query Frame = 3

Query:   93 PLEKFEN------DKAFTGALQEQKKNFSKPTHLAQNEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETL---------YPEQCGRVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVFTS 569
            P E F N      DK        +K  +  P HLAQ +DPW+RL+   T +S R   T +D   P D+LDF+L TLYN H+  FK++ +I+   ET+         +P +C         P+   +  + H +      KKES  +++  I S HT  TN G+SRK DGG F++
Sbjct:    4 PQETFSNPALRDEDKHLGNLWASKKSLYKNPAHLAQQQDPWSRLSSTPTATS-RSRDTFFDSKIPKDDLDFRLATLYNHHTGAFKNKTEILLHQETIEDIQGTKIQFPGEC---FHAPSAPIT-SRTTIRHWIN----PKKESIHSIQGSIVSPHTAATNGGYSRKNDGGFFST 168

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BLAST of Si:ch211-163l21.7 vs. UniProt/SwissProt
Match: sp|A8Y5T1|CA194_DANRE (Uncharacterized protein C1orf194 homolog OS=Danio rerio OX=7955 GN=si:ch211-163l21.7 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.662e-33
Identity = 65/163 (39.88%), Postives = 95/163 (58.28%), Query Frame = 3

Query:   81 RDPFPLEKFENDKAFTGALQEQKKNFSKPTHLAQNEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETLYPEQCGRVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVFTS 569
            RDPFP  ++END   TG  + QK +  KPTHLAQN++PW RL    T +S R     YD   P D+LD  LK  Y+ H  LF++++Q + Q ET+  +   +  K     V +   A N  +++   ++K S +++K  I SHHT  TNRG+SRK DGG +++
Sbjct:    5 RDPFPFPRYENDFTLTGRKEIQKLSDDKPTHLAQNDEPWRRLHNTTTEASSRRTVFHYDTTTPKDSLDIHLKAAYDHHLGLFQNKSQTVMQMETVGADNGTKKNKELEDSVCD---AENKGIKVWVDTQKASLYSIKGSIESHHTASTNRGYSRKHDGGFYST 164

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BLAST of Si:ch211-163l21.7 vs. UniProt/SwissProt
Match: sp|Q5T5A4|CA194_HUMAN (Protein C1orf194 OS=Homo sapiens OX=9606 GN=C1orf194 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.797e-26
Identity = 63/170 (37.06%), Postives = 94/170 (55.29%), Query Frame = 3

Query:   81 RDPFPLEKFENDKAFTGALQEQKK-NFSKPTHLAQNEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPET---LYPEQC---GRVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVFTS 569
            RDPF     +ND ++ G L+  KK  +  PTHLAQ ++PW+RL    T++S+R +A  +DP  P D+LDF+L  LYN H+  FK++++I+   +T    Y  +    G  L     P+          +R     KKES  +++  I S HT  TN G+SRK DGG F++
Sbjct:    5 RDPFQQPTLDNDDSYLGELRASKKLPYKNPTHLAQQQEPWSRLNSTPTITSMRRDAYYFDPEIPKDDLDFRLAALYNHHTGTFKNKSEILLNQKTTQDTYRTKIQFPGEFLTPPTPPI-----TFLANIRHWINPKKESIHSIQGSIVSPHTAATNGGYSRKKDGGFFST 169

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BLAST of Si:ch211-163l21.7 vs. UniProt/SwissProt
Match: sp|Q9DAD0|CA194_MOUSE (Protein C1orf194 homolog OS=Mus musculus OX=10090 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.165e-21
Identity = 60/174 (34.48%), Postives = 87/174 (50.00%), Query Frame = 3

Query:   93 PLEKFEN------DKAFTGALQEQKKNFSKPTHLAQNEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETL---------YPEQCGRVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVFTS 569
            P E F N      DK        +K  +  P HLAQ +DPW+RL+   T +S R   T +D   P D+LDF+L TLYN H+  FK++ +I+   ET+         +P +C         P+   +  + H +      KKES  +++  I S HT  TN G+SRK DGG F++
Sbjct:    4 PQETFSNPALRDEDKHLGNLWASKKSLYKNPAHLAQQQDPWSRLSSTPTATS-RSRDTFFDSKIPKDDLDFRLATLYNHHTGAFKNKTEILLHQETIEDIQGTKIQFPGEC---FHAPSAPIT-SRTTIRHWIN----PKKESIHSIQGSIVSPHTAATNGGYSRKNDGGFFST 168

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BLAST of Si:ch211-163l21.7 vs. TrEMBL
Match: A0A1I8GH79 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig028779g1 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.718e-54
Identity = 89/168 (52.98%), Postives = 118/168 (70.24%), Query Frame = 3

Query:   66 MSTSLRDPFPLEKFENDKAFTGALQEQKKNFSKPTHLAQNEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETLYPEQCGRVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVFTS 569
            MST+ RDP+P  ++E+D+   G    +K  +SKPTHLAQ +DPW+RL    TL+S RH+A  YDP AP+D+LDF LKT Y+QH +LFK ++Q++ Q ET Y E  GRVLKNR + V++  P L HPLR  +  ++E   ++K  I  HHTQ TNRG+SRKPDGG FTS
Sbjct:    1 MSTAHRDPYPYPRYESDQTLAGLKPTEKATYSKPTHLAQQDDPWSRLNLSQTLTSTRHQAFYYDPQAPNDSLDFVLKTEYDQHRDLFKGKSQVLLQTETCYDEH-GRVLKNRIRQVQQVPPKLGHPLRQWQQPRREDVNSIKNAIEGHHTQATNRGYSRKPDGGHFTS 167

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BLAST of Si:ch211-163l21.7 vs. TrEMBL
Match: A0A1I8HAG6 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig028779g3 PE=4 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.534e-53
Identity = 89/168 (52.98%), Postives = 116/168 (69.05%), Query Frame = 3

Query:   66 MSTSLRDPFPLEKFENDKAFTGALQEQKKNFSKPTHLAQNEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETLYPEQCGRVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVFTS 569
            MST+ RDP+P  ++E+D+   G    +K  +SKPTHLAQ +DPW+RL    TL+S RH+A  YDP AP+D+LDF LKT Y+QH  LFK +NQ++ Q ET   E  GRVLKNR + V++  P L HPLR  +  ++E   ++K  I  HHTQ TNRG+SRKPDGG FTS
Sbjct:    1 MSTAHRDPYPYPRYESDQTLAGLKPTEKATYSKPTHLAQQDDPWSRLNLSQTLTSTRHQAFYYDPQAPNDSLDFVLKTEYDQHRELFKGKNQVLLQTETCSDEH-GRVLKNRIRQVQQVPPKLGHPLRQWQQPRREDVNSIKNAIEGHHTQATNRGYSRKPDGGHFTS 167

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BLAST of Si:ch211-163l21.7 vs. TrEMBL
Match: A0A3S1BHU0 (Uncharacterized protein OS=Elysia chlorotica OX=188477 GN=EGW08_003639 PE=4 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 3.799e-52
Identity = 88/165 (53.33%), Postives = 113/165 (68.48%), Query Frame = 3

Query:   75 SLRDPFPLEKFENDKAFTGALQEQKKNFSKPTHLAQNEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETLYPEQCGRVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVFTS 569
            S RDP+P  + +ND  F G    +   +S PTHLAQ + PW RL+   TLSS RHE   +DP+AP+D+LDF LK+ YNQH  L +++N++++QPET   +  GRVLKNR  PV E+K ALNHPL I   +KKE+  +VK  I SHHT+ TN GFSRKPDGG F S
Sbjct:    6 SSRDPYPFPQRQNDDNFMGKRDPEAICYSVPTHLAQRQQPWERLSCQHTLSSARHEVYHHDPIAPNDDLDFVLKSTYNQHEELLRNKNEVVYQPET-KGQHHGRVLKNRVIPVPEKKMALNHPLIITSQTKKENINSVKSAIESHHTETTNMGFSRKPDGGFFCS 169

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BLAST of Si:ch211-163l21.7 vs. TrEMBL
Match: A0A1S3JNJ5 (uncharacterized protein C1orf194 homolog OS=Lingula unguis OX=7574 GN=LOC106174790 PE=4 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.061e-50
Identity = 89/163 (54.60%), Postives = 107/163 (65.64%), Query Frame = 3

Query:   81 RDPFPLEKFENDKAFTGALQEQKKNFSKPTHLAQNEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETLYPEQCGRVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVFTS 569
            RD +P  +FEND  F G     K  ++ PTHLAQ  DPW RL    TL+S R E   YDPLAP D+LDF LK+ YN H  LFK++N  ++QPET+  E  GRVLKNR K +K E   LNHPL I E +KKES  +VK  I  +HTQ TN G+SRKPDGG FT+
Sbjct:    5 RDCYPFPRFENDDQFVGQRSSLKLPYTLPTHLAQTFDPWRRLNSTATLTSARREVYYYDPLAPVDSLDFILKSQYNHHDELFKNRNHTLFQPETIGMEH-GRVLKNRVKVIKVEPKPLNHPLEIAEWTKKESIHSVKNAIDGNHTQTTNIGYSRKPDGGFFTT 166

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BLAST of Si:ch211-163l21.7 vs. TrEMBL
Match: A0A2C9JH05 (Uncharacterized protein OS=Biomphalaria glabrata OX=6526 GN=106067389 PE=4 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.189e-49
Identity = 86/179 (48.04%), Postives = 117/179 (65.36%), Query Frame = 3

Query:   75 SLRDPFPLEKFENDKAFTGALQEQKKNFSKPTHLAQNEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETLYPEQCGRVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVFTS*RNSEILTIFAKFN 611
            S R+P+P  +F+ND  F G  + +   +  PTHLAQ + PW+RL+   TLSS RHEA  +DP AP+D+LDF LK  YN H  L  ++N++++QPET + ++ GRVLKNR KP+ E+K  LNHPL I    KKE+  +VK  I SHH + TN+G+SRKPDGG F       +  +F  FN
Sbjct:    6 STRNPYPFPQFQNDDNFQGQREPEIICYPVPTHLAQRQLPWHRLSTHHTLSSARHEAYHFDPAAPNDDLDFVLKATYNHHEALLNNKNEVVFQPET-FTDEHGRVLKNRVKPLPEKKMPLNHPLIITGQEKKENLNSVKNAIASHHIETTNKGYSRKPDGGFFV------LKIVFIMFN 177

[Close]

BLAST of Si:ch211-163l21.7 vs. Ensembl Cavefish
Match: si:ch211-163l21.7 (uncharacterized protein C1orf194 homolog [Source:NCBI gene;Acc:103046376])

HSP 1 Score: 123.635 bits (309), Expect = 2.437e-35
Identity = 66/163 (40.49%), Postives = 98/163 (60.12%), Query Frame = 3

Query:   81 RDPFPLEKFENDKAFTGALQEQKKNFSKPTHLAQNEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETLYPEQCGRVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVFTS 569
            RDP+   ++END  FTG  + QK  F KPTHLAQN++PW+RL    T SS+R     +D  AP D+LD  L+++Y+ H++L  ++NQ + Q ETL        +  R K  + ++P    PLR+    +K S F+++  I S H   TNRG+SRK DGG +++
Sbjct:    5 RDPYQFPRYENDLNFTGIKESQKPPFKKPTHLAQNDEPWSRLNDTATFSSMRRSVLHHDEFAPKDSLDLHLRSVYDNHADLLLNKNQTVLQRETL--------MDRRGKHNESDEPE-KEPLRVWVNPQKASIFSIEGSIESPHKAATNRGYSRKHDGGFYSA 158

[Close]

BLAST of Si:ch211-163l21.7 vs. Ensembl Cavefish
Match: si:ch211-163l21.7 (uncharacterized protein C1orf194 homolog [Source:NCBI gene;Acc:103046376])

HSP 1 Score: 98.9821 bits (245), Expect = 2.055e-25
Identity = 54/140 (38.57%), Postives = 82/140 (58.57%), Query Frame = 3

Query:   81 RDPFPLEKFENDKAFTGALQEQKKNFSKPTHLAQNEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETLYPEQCGRVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGI 500
            RDP+   ++END  FTG  + QK  F KPTHLAQN++PW+RL    T SS+R     +D  AP D+LD  L+++Y+ H++L  ++NQ + Q ETL        +  R K  + ++P    PLR+    +K S F+++  I
Sbjct:    5 RDPYQFPRYENDLNFTGIKESQKPPFKKPTHLAQNDEPWSRLNDTATFSSMRRSVLHHDEFAPKDSLDLHLRSVYDNHADLLLNKNQTVLQRETL--------MDRRGKHNESDEPE-KEPLRVWVNPQKASIFSIEGSI 135

[Close]

BLAST of Si:ch211-163l21.7 vs. Ensembl Cavefish
Match: ENSAMXT00000055353.1 (pep primary_assembly:Astyanax_mexicanus-2.0:13:2365608:2367882:1 gene:ENSAMXG00000030701.1 transcript:ENSAMXT00000055353.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 49.2914 bits (116), Expect = 2.260e-7
Identity = 42/138 (30.43%), Postives = 63/138 (45.65%), Query Frame = 3

Query:  111 NDKAFTGALQEQKKN---FSKPTHLAQ----NEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETL--YPEQCGRVLKNRYKPVK-------EEKPALNHPLRIVEASKKES 476
            +DK  T A +  K       KP   A      EDPW+RL+   T SS R      D   P D+LD KL ++Y+Q  +    +N+++ Q ETL   PE+       + +P +         KP + H L+ +  S+K S
Sbjct:    2 SDKGITYAFKRYKGEPSFLMKPIKYAVLQTPKEDPWSRLSETPTFSSKRRSVYSDD--NPIDSLDLKLTSVYDQSKDFLSSKNKVVLQSETLGIKPEELQEPEALQEEPCRLPRCTTGSVKPQMLHSLKSLSMSQKSS 137

[Close]

BLAST of Si:ch211-163l21.7 vs. Ensembl Nematostella
Match: EDO45338 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RT80])

HSP 1 Score: 107.071 bits (266), Expect = 3.050e-29
Identity = 66/166 (39.76%), Postives = 90/166 (54.22%), Query Frame = 3

Query:   81 RDPFPLEKFENDKAFTGALQEQ----KKNFSKPTHLAQNEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETLYPEQCGRVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVFT 566
            RDP+P  + +ND  FTG+  +Q     KN ++      N    +RL    TLSS R E   +DP AP D+LDF +K+ Y+ H+   +   + + QPET+   Q GRVLKNR  P   E      PL    A KKE+  ++   I SHH+  TN G+SRK DGG +T
Sbjct:    3 RDPYPFPRLQNDTDFTGSPAKQVGVTTKNHTRSKSAEGNA--HDRLYQTATLSSSRREVFYFDPQAPQDSLDFVIKSTYDNHNEFLRSAAETLVQPETIGLTQ-GRVLKNRPPPPDPEIDMYKLPLTRSTAIKKENINSINGAIESHHSAATNGGYSRKHDGGFYT 165

[Close]

BLAST of Si:ch211-163l21.7 vs. Planmine SMEST
Match: SMESG000026490.1 (SMESG000026490.1)

HSP 1 Score: 350.903 bits (899), Expect = 7.762e-125
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 3

Query:   66 MSTSLRDPFPLEKFENDKAFTGALQEQKKNFSKPTHLAQNEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETLYPEQCGRVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVFTS 569
            MSTSLRDPFPLEKFENDKAFTG LQEQKKNFSKPTHLAQNEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETLYPEQCGRVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVFTS
Sbjct:    1 MSTSLRDPFPLEKFENDKAFTGVLQEQKKNFSKPTHLAQNEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETLYPEQCGRVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVFTS 168

[Close]

BLAST of Si:ch211-163l21.7 vs. Planmine SMEST
Match: SMESG000069016.1 (SMESG000069016.1)

HSP 1 Score: 113.62 bits (283), Expect = 1.012e-31
Identity = 60/134 (44.78%), Postives = 80/134 (59.70%), Query Frame = 3

Query:  165 PTHLAQNEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETLYPEQCGRVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVFT 566
            P  L Q +DPWNRL    TL+S RH    +DPL P D+LDF LK  Y+ H + +K + +   Q E+ +    GR++KNR +P   + P   HPL I E+  KES  +VK  I   H+Q TN G+SR PDGG+FT
Sbjct:    9 PVILHQEKDPWNRLYNARTLTSTRHRYNYFDPLVPKDSLDFILKEEYDHHRDWWKTRAEERVQIES-FTGSHGRIMKNRIRPYNFKSPKTKHPLVIAESPVKESIHSVKNAIEGCHSQITNAGYSRMPDGGIFT 141

[Close]

BLAST of Si:ch211-163l21.7 vs. Planmine SMEST
Match: SMESG000065614.1 (SMESG000065614.1)

HSP 1 Score: 104.76 bits (260), Expect = 2.075e-28
Identity = 59/137 (43.07%), Postives = 81/137 (59.12%), Query Frame = 3

Query:  162 KPTHLAQNEDPWNRLAYDGTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETLYPEQCGRVLKNRYKPVKEEKPALNHPLRI-VEASKKESPFNVKCGIPSHHTQETNRGFSRKPDGGVFTS 569
            +PT LAQN DP+NRL +  TL+S R      DPL P D LD  LK  Y+QH + +K++ +      TL  E  GR+ KN+   VK++ P L HPL+I     +KE+ F++K  I   H Q TN G+SRK DG +F +
Sbjct:    4 QPTKLAQNRDPYNRLFFTHTLASTRRRYAYLDPLVPKDCLDLILKEEYDQHRDWWKNRAEQRISFNTL-SESHGRIFKNKLTGVKKKLPKLIHPLKIRAPGYRKENVFSIKNAIEGCHLQATNAGYSRKRDGCIFCN 139

The following BLAST results are available for this feature:

BLAST of Si:ch211-163l21.7 vs. Ensembl Human
BLAST of Si:ch211-163l21.7 vs. Ensembl Celegans
BLAST of Si:ch211-163l21.7 vs. Ensembl Fly
BLAST of Si:ch211-163l21.7 vs. Ensembl Zebrafish
BLAST of Si:ch211-163l21.7 vs. Ensembl Xenopus
BLAST of Si:ch211-163l21.7 vs. Ensembl Mouse
BLAST of Si:ch211-163l21.7 vs. UniProt/SwissProt
BLAST of Si:ch211-163l21.7 vs. TrEMBL
BLAST of Si:ch211-163l21.7 vs. Ensembl Cavefish
BLAST of Si:ch211-163l21.7 vs. Ensembl Sea Lamprey
BLAST of Si:ch211-163l21.7 vs. Ensembl Yeast
BLAST of Si:ch211-163l21.7 vs. Ensembl Nematostella
BLAST of Si:ch211-163l21.7 vs. Ensembl Medaka
BLAST of Si:ch211-163l21.7 vs. Planmine SMEST

BLAST of Si:ch211-163l21.7 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3


Match Name	E-value	Identity	Description
C1orf194	5.824e-27	37.06	chromosome 1 open reading frame 194 [Source:HGNC S...	[more]
C1orf194	7.344e-22	36.81	chromosome 1 open reading frame 194 [Source:HGNC S...	[more]
C1orf194	5.421e-9	34.58	chromosome 1 open reading frame 194 [Source:HGNC S...	[more]

BLAST of Si:ch211-163l21.7 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Si:ch211-163l21.7 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2


Match Name	E-value	Identity	Description
CG5435	6.007e-11	30.46	gene:FBgn0032431 transcript:FBtr0345613	[more]
CG5435	6.007e-11	30.46	gene:FBgn0032431 transcript:FBtr0080387	[more]

BLAST of Si:ch211-163l21.7 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1


Match Name	E-value	Identity	Description
si:ch211-163l21.7	2.202e-34	39.88	si:ch211-163l21.7 [Source:NCBI gene;Acc:567726]	[more]

BLAST of Si:ch211-163l21.7 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1


Match Name	E-value	Identity	Description
naxd	8.294e-41	45.12	NAD(P)HX dehydratase [Source:Xenbase;Acc:XB-GENE-9...	[more]

BLAST of Si:ch211-163l21.7 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1


Match Name	E-value	Identity	Description
1700013F07Rik	4.525e-22	34.48	RIKEN cDNA 1700013F07 gene [Source:MGI Symbol;Acc:...	[more]

BLAST of Si:ch211-163l21.7 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 3


Match Name	E-value	Identity	Description
sp\|A8Y5T1\|CA194_DANRE	1.662e-33	39.88	Uncharacterized protein C1orf194 homolog OS=Danio ...	[more]
sp\|Q5T5A4\|CA194_HUMAN	2.797e-26	37.06	Protein C1orf194 OS=Homo sapiens OX=9606 GN=C1orf1...	[more]
sp\|Q9DAD0\|CA194_MOUSE	3.165e-21	34.48	Protein C1orf194 homolog OS=Mus musculus OX=10090 ...	[more]

BLAST of Si:ch211-163l21.7 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A1I8GH79	1.718e-54	52.98	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]
A0A1I8HAG6	1.534e-53	52.98	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]
A0A3S1BHU0	3.799e-52	53.33	Uncharacterized protein OS=Elysia chlorotica OX=18...	[more]
A0A1S3JNJ5	3.061e-50	54.60	uncharacterized protein C1orf194 homolog OS=Lingul...	[more]
A0A2C9JH05	5.189e-49	48.04	Uncharacterized protein OS=Biomphalaria glabrata O...	[more]

BLAST of Si:ch211-163l21.7 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3


Match Name	E-value	Identity	Description
si:ch211-163l21.7	2.437e-35	40.49	uncharacterized protein C1orf194 homolog [Source:N...	[more]
si:ch211-163l21.7	2.055e-25	38.57	uncharacterized protein C1orf194 homolog [Source:N...	[more]
ENSAMXT00000055353.1	2.260e-7	30.43	pep primary_assembly:Astyanax_mexicanus-2.0:13:236...	[more]

BLAST of Si:ch211-163l21.7 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Si:ch211-163l21.7 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Si:ch211-163l21.7 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO45338	3.050e-29	39.76	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of Si:ch211-163l21.7 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Si:ch211-163l21.7 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3


Match Name	E-value	Identity	Description
SMESG000026490.1	7.762e-125	99.40	SMESG000026490.1	[more]
SMESG000069016.1	1.012e-31	44.78	SMESG000069016.1	[more]
SMESG000065614.1	2.075e-28	43.07	SMESG000065614.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30027818 ID=SMED30027818|Name=Si:ch211-163l21.7|organism=Schmidtea mediterranea sexual|type=transcript|length=700bp
AGTGATAGTTGCAGTTATTATCTTGAAAATATTAATAATTTAAAATAATT
AAGATATAATTCAAAATGAGCACATCACTAAGAGATCCATTTCCATTAGA
GAAATTTGAAAATGATAAGGCATTCACTGGAGCACTCCAAGAACAAAAAA
AGAATTTCTCAAAGCCGACACATTTAGCGCAAAATGAAGATCCATGGAAT
CGACTGGCATATGATGGAACCCTGTCAAGCATTCGTCATGAGGCAACTCA
ATATGATCCGTTAGCTCCATCTGACAATCTTGATTTCAAACTGAAAACAT
TATACAACCAACACTCGAATCTGTTCAAGGACCAGAATCAAATAATGTGG
CAACCAGAAACATTATATCCAGAACAGTGCGGTCGGGTTTTAAAGAATCG
ATACAAACCAGTCAAAGAGGAGAAGCCTGCTCTGAACCATCCATTGAGGA
TTGTTGAGGCATCCAAGAAGGAAAGTCCATTTAATGTGAAATGCGGAATA
CCAAGCCACCACACACAGGAAACTAACAGAGGATTTTCCAGGAAGCCTGA
TGGGGGAGTGTTCACCTCCTAAAGAAACAGTGAAATCCTGACAATTTTTG
CTAAATTTAACTAGAGATTTTCACACGAAATATCCTTTCCTAGCAATTTG
TTGTTGTGTTCGTACCTTTCTGTTCAAATATATTTCAATGTCAAAAAAAA

protein sequence of SMED30027818-orf-1

>SMED30027818-orf-1 ID=SMED30027818-orf-1|Name=SMED30027818-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=169bp
MSTSLRDPFPLEKFENDKAFTGALQEQKKNFSKPTHLAQNEDPWNRLAYD
GTLSSIRHEATQYDPLAPSDNLDFKLKTLYNQHSNLFKDQNQIMWQPETL
YPEQCGRVLKNRYKPVKEEKPALNHPLRIVEASKKESPFNVKCGIPSHHT
QETNRGFSRKPDGGVFTS*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **biological process**
Term	Definition
GO:0051181	cofactor transport

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000016	pharynx
PLANA:0000020	protonephridia
PLANA:0000034	epidermis
PLANA:0000096	ventral epidermis
PLANA:0000099	neuron
PLANA:0000106	ciliated epithelial cell
PLANA:0000418	head
PLANA:0002032	epidermal cell

Vocabulary: **INTERPRO**
Term	Definition
IPR022179	DUF3695

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022179	Protein of unknown function DUF3695	PFAM	PF12494	DUF3695	coord: 30..127 e-value: 9.0E-26 score: 89.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..168

Main menu

Si:ch211-163l21.7

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 15

Owlery

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