Tubulin alpha chain

Overview
NameTubulin alpha chain
Smed IDSMED30027808
Length (bp)342
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Tubulin alpha chain (SMED30027808) t-SNE clustered cells

Violin plots show distribution of expression levels for Tubulin alpha chain (SMED30027808) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30027808

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30027808 dd_Smed_v4_26952_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30027808 dd_Smed_v4_26952_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30027808 dd_Smed_v4_26952_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30027808 dd_Smed_v4_26952_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Human
Match: TUBA8 (tubulin alpha 8 [Source:HGNC Symbol;Acc:HGNC:12410])

HSP 1 Score: 95.1301 bits (235), Expect = 7.374e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  277 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 369
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Human
Match: TUBA8 (tubulin alpha 8 [Source:HGNC Symbol;Acc:HGNC:12410])

HSP 1 Score: 95.5153 bits (236), Expect = 9.984e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  367 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 459
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Human
Match: TUBA3C (tubulin alpha 3c [Source:HGNC Symbol;Acc:HGNC:12408])

HSP 1 Score: 95.1301 bits (235), Expect = 1.070e-23
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Human
Match: TUBA3D (tubulin alpha 3d [Source:HGNC Symbol;Acc:HGNC:24071])

HSP 1 Score: 95.1301 bits (235), Expect = 1.070e-23
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Human
Match: TUBA4A (tubulin alpha 4a [Source:HGNC Symbol;Acc:HGNC:12407])

HSP 1 Score: 95.1301 bits (235), Expect = 1.102e-23
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Celegans
Match: tba-5 (Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:Q19490])

HSP 1 Score: 96.6709 bits (239), Expect = 1.123e-24
Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    MA    +V +L N   I++    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDMAKLQRAVCMLSNTTAIQEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Celegans
Match: tba-9 (Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:Q20221])

HSP 1 Score: 94.3597 bits (233), Expect = 1.013e-23
Identity = 39/93 (41.94%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V  + ++    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  348 FVDWCPTGFKVGINYQPPTVVPGADLSKLQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 440
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Celegans
Match: mec-12 (Tubulin alpha-3 chain Detyrosinated tubulin alpha-3 chain [Source:UniProtKB/Swiss-Prot;Acc:P91910])

HSP 1 Score: 93.9745 bits (232), Expect = 1.077e-23
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Celegans
Match: tba-6 (Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:P91873])

HSP 1 Score: 93.9745 bits (232), Expect = 1.159e-23
Identity = 38/93 (40.86%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +     SV ++ N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+E+
Sbjct:  349 FVEWCPTGFKVGINYQPPTVVPGGDLGKQTRSVCMISNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEI 441
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Celegans
Match: tba-7 (Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:O18154])

HSP 1 Score: 93.2041 bits (230), Expect = 2.400e-23
Identity = 39/93 (41.94%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+G+N+Q P+ +    MA    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  338 FVDWCPTGFKVGLNYQPPTVIPGGDMAKVPRAVCMLSNTTAIAEAWQRLDYKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 430
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Fly
Match: alphaTub84B (gene:FBgn0003884 transcript:FBtr0081639)

HSP 1 Score: 95.1301 bits (235), Expect = 5.283e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Fly
Match: alphaTub84D (gene:FBgn0003885 transcript:FBtr0081538)

HSP 1 Score: 94.3597 bits (233), Expect = 1.044e-23
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Fly
Match: alphaTub85E (gene:FBgn0003886 transcript:FBtr0082087)

HSP 1 Score: 93.5893 bits (231), Expect = 2.134e-23
Identity = 40/93 (43.01%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFAEAREDLAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Fly
Match: alphaTub67C (gene:FBgn0087040 transcript:FBtr0076393)

HSP 1 Score: 93.2041 bits (230), Expect = 3.079e-23
Identity = 40/93 (43.01%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFKIGIN++ P++V    +A ++ +  +L N   I     +L  +F+++F KR F HW++G+ ME GEF EAR+ IA +  D++EV
Sbjct:  354 FVDWCPTGFKIGINYEKPAFVPDGDLAKTSRACCMLSNTTAISVAFSNLSYKFDLMFKKRAFVHWYVGEGMEEGEFTEARENIAVLERDFEEV 446
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Fly
Match: CG7794 (gene:FBgn0038565 transcript:FBtr0083540)

HSP 1 Score: 72.0182 bits (175), Expect = 1.054e-15
Identity = 34/93 (36.56%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV   PTGFKIG++   P YV    +A +N +   + N+  I+     LV++F+ L+ +R F + ++G+ +E G FNEA + I  ++ DY EV
Sbjct:  344 FVDWSPTGFKIGVSPMPPYYVPGGDLAPTNRACVAISNNTNIRIAWCRLVNKFDKLYQRRAFVYHYVGEGLEEGNFNEASENICQLVHDYLEV 436
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Zebrafish
Match: tuba8l4 (tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860])

HSP 1 Score: 95.5153 bits (236), Expect = 1.340e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  190 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEV 282
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Zebrafish
Match: tuba8l (tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167])

HSP 1 Score: 95.1301 bits (235), Expect = 6.979e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Zebrafish
Match: tuba1b (tubulin, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030822-1])

HSP 1 Score: 95.1301 bits (235), Expect = 6.979e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Zebrafish
Match: tuba1b (tubulin, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030822-1])

HSP 1 Score: 95.1301 bits (235), Expect = 6.979e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Zebrafish
Match: si:ch73-199e17.1 (si:ch73-199e17.1 [Source:ZFIN;Acc:ZDB-GENE-100921-8])

HSP 1 Score: 95.1301 bits (235), Expect = 7.049e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Xenopus
Match: tubal3.1 (tubulin, alpha 4 [Source:NCBI gene;Acc:407878])

HSP 1 Score: 96.6709 bits (239), Expect = 3.156e-24
Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L ++F++++SKR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDNKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Xenopus
Match: jmjd8 (jumonji domain containing 8 [Source:Xenbase;Acc:XB-GENE-6070939])

HSP 1 Score: 95.9005 bits (237), Expect = 3.583e-24
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++F+KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  292 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 384
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Xenopus
Match: tuba3e (tubulin alpha 3e [Source:NCBI gene;Acc:548558])

HSP 1 Score: 96.2857 bits (238), Expect = 4.688e-24
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F++++SKR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  342 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEV 434
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Xenopus
Match: tuba3e (tubulin alpha 3e [Source:NCBI gene;Acc:548558])

HSP 1 Score: 95.9005 bits (237), Expect = 4.985e-24
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F++++SKR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  346 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEV 438
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Xenopus
Match: hspb1 (heat shock protein family B (small) member 1 [Source:Xenbase;Acc:XB-GENE-480320])

HSP 1 Score: 95.9005 bits (237), Expect = 5.025e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DYDE+
Sbjct:  342 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYDEI 434
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Mouse
Match: Tuba3a (tubulin, alpha 3A [Source:MGI Symbol;Acc:MGI:1095406])

HSP 1 Score: 95.1301 bits (235), Expect = 7.346e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Mouse
Match: Tuba3b (tubulin, alpha 3B [Source:MGI Symbol;Acc:MGI:1095408])

HSP 1 Score: 95.1301 bits (235), Expect = 7.346e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Mouse
Match: Tuba1c (tubulin, alpha 1C [Source:MGI Symbol;Acc:MGI:1095409])

HSP 1 Score: 95.1301 bits (235), Expect = 7.456e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Mouse
Match: Tuba4a (tubulin, alpha 4A [Source:MGI Symbol;Acc:MGI:1095410])

HSP 1 Score: 95.1301 bits (235), Expect = 7.567e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Mouse
Match: Tuba8 (tubulin, alpha 8 [Source:MGI Symbol;Acc:MGI:1858225])

HSP 1 Score: 95.1301 bits (235), Expect = 7.684e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. UniProt/SwissProt
Match: sp|P02553|TBA_LYTPI (Tubulin alpha chain (Fragment) OS=Lytechinus pictus OX=7653 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.275e-25
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:   53 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 145
[Close]
BLAST of Tubulin alpha chain vs. UniProt/SwissProt
Match: sp|P24634|TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=tubB PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.420e-24
Identity = 42/93 (45.16%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
             V  CPTGFK+GIN+Q P+ V  S++A  + SV++L N   I +    L  +F++++SKR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  345 LVEWCPTGFKVGINYQKPARVPGSELAPVDRSVSMLSNTTAISEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 437
[Close]
BLAST of Tubulin alpha chain vs. UniProt/SwissProt
Match: sp|P24635|TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris OX=6645 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.625e-24
Identity = 39/93 (41.94%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   + +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  132 FVDWCPTGFKVGINYQPPTVVLGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 224
[Close]
BLAST of Tubulin alpha chain vs. UniProt/SwissProt
Match: sp|P53372|TBA1_PNECA (Tubulin alpha chain OS=Pneumocystis carinii OX=4754 GN=TUB1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.489e-23
Identity = 41/93 (44.09%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+G+ +Q P YV +  +A  N +V +L N  +I +    L  +F++++SKR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKLGVCYQPPQYVPNGDLAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. UniProt/SwissProt
Match: sp|P09645|TBA8_CHICK (Tubulin alpha-8 chain (Fragment) OS=Gallus gallus OX=9031 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.610e-23
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  218 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 310
[Close]
BLAST of Tubulin alpha chain vs. TrEMBL
Match: A0A1Y2HXP4 (Alpha tubulin OS=Catenaria anguillulae PL171 OX=765915 GN=BCR44DRAFT_1458910 PE=4 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.723e-24
Identity = 41/93 (44.09%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q+P+ V  ++MA    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:   62 FVDWCPTGFKVGINYQAPTVVPGAEMARVGRAVCMLSNTTAIAEAWARLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 154
[Close]
BLAST of Tubulin alpha chain vs. TrEMBL
Match: A0A0R3R844 (Tubulin_C domain-containing protein OS=Brugia timori OX=42155 GN=BTMF_LOCUS14180 PE=4 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.271e-24
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEVCY 285
            FV  CPTGFKIGIN+Q P+ V    +A +  +V++L N   I +    L  +F+++++KR F HW++G+ ME GEF EAR+++A +  DYDEV +
Sbjct:   31 FVDWCPTGFKIGINYQPPTVVPGGDVAKAPRAVSMLANTTAIAEAWARLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALERDYDEVGF 125
[Close]
BLAST of Tubulin alpha chain vs. TrEMBL
Match: A0A3P7KBW5 (Tubulin_C domain-containing protein (Fragment) OS=Onchocerca ochengi OX=42157 GN=NOO_LOCUS11179 PE=4 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.913e-24
Identity = 40/89 (44.94%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:   13 CPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            CPTGFK+GIN+Q P+ V+   +A  + +V +L N   I +    L  +F++++SKR F HW++G+ ME GEF+EAR+++A +  DYDEV
Sbjct:    1 CPTGFKVGINYQPPTVVQGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEV 89
[Close]
BLAST of Tubulin alpha chain vs. TrEMBL
Match: A0A182ESQ9 (Tubulin_C domain-containing protein OS=Onchocerca ochengi OX=42157 PE=4 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.138e-24
Identity = 40/89 (44.94%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:   13 CPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            CPTGFK+GIN+Q P+ V+   +A  + +V +L N   I +    L  +F++++SKR F HW++G+ ME GEF+EAR+++A +  DYDEV
Sbjct:    2 CPTGFKVGINYQPPTVVQGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEV 90
[Close]
BLAST of Tubulin alpha chain vs. TrEMBL
Match: A0A086QEX9 (Putative alpha-tubulin I (Fragment) OS=Toxoplasma gondii VAND OX=933077 GN=TGVAND_231770B PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.883e-24
Identity = 42/94 (44.68%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEVC 282
            FV  CPTGFK G+N+Q P++V  S +A +  SV ++ N   IK+ +  +  +F+ ++SKR F HWF+G+ ME G+  EARD++A +  DYDEV 
Sbjct:   23 FVDWCPTGFKTGLNYQPPTFVPDSHLAAAPRSVCMMSNSTAIKEVIQRIDIKFDKMYSKRAFVHWFVGEGMEEGQLTEARDDLAALERDYDEVA 116
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Cavefish
Match: ENSAMXT00000005818.2 (pep primary_assembly:Astyanax_mexicanus-2.0:22:14648029:14650102:-1 gene:ENSAMXG00000008652.2 transcript:ENSAMXT00000005818.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 95.1301 bits (235), Expect = 6.014e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  328 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEV 420
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Cavefish
Match: ENSAMXT00000019222.2 (tubulin alpha-1 chain [Source:NCBI gene;Acc:103031418])

HSP 1 Score: 95.1301 bits (235), Expect = 6.472e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Cavefish
Match: si:ch211-114n24.6 (tubulin alpha-1A chain-like [Source:NCBI gene;Acc:103034569])

HSP 1 Score: 95.1301 bits (235), Expect = 6.539e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Cavefish
Match: ENSAMXT00000019223.2 (tubulin alpha-1 chain [Source:NCBI gene;Acc:103031418])

HSP 1 Score: 95.1301 bits (235), Expect = 6.637e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  344 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 436
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Cavefish
Match: ENSAMXT00000042562.1 (tubulin alpha chain [Source:NCBI gene;Acc:103038315])

HSP 1 Score: 95.1301 bits (235), Expect = 6.637e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Yeast
Match: TUB1 (Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules; relative distribution to nuclear foci increases upon DNA replication stress; TUB1 has a paralog, TUB3, that arose from the whole genome duplication [Source:SGD;Acc:S000004550])

HSP 1 Score: 88.9669 bits (219), Expect = 1.551e-22
Identity = 38/93 (40.86%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
             V  CPTGFKIGI ++ P+   +S++AT + +V +L N  +I +    +  +F+++++KR F HW++G+ ME GEF EAR+++A +  DY EV
Sbjct:  344 LVDWCPTGFKIGICYEPPTATPNSQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALERDYIEV 436
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Yeast
Match: TUB3 (Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules; expressed at lower level than Tub1p; TUB3 has a paralog, TUB1, that arose from the whole genome duplication [Source:SGD;Acc:S000004593])

HSP 1 Score: 88.5817 bits (218), Expect = 1.734e-22
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
             V  CPTGFKIGI ++ PS + SS++A  + +V +L N   I      +  +F+++++KR F HW++G+ ME GEF EAR+++A +  DY EV
Sbjct:  344 MVDWCPTGFKIGICYEPPSVIPSSELANVDRAVCMLSNTTAIADAWKRIDQKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALERDYIEV 436
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Nematostella
Match: EDO29379 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T3T4])

HSP 1 Score: 95.5153 bits (236), Expect = 3.850e-25
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  190 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 282
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Nematostella
Match: EDO29378 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T3T3])

HSP 1 Score: 95.1301 bits (235), Expect = 7.388e-25
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  223 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 315
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Nematostella
Match: EDO44766 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUX0])

HSP 1 Score: 95.5153 bits (236), Expect = 1.330e-24
Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    SV +L N   I      L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  308 FVDWCPTGFKVGINYQQPTAVPGGDLAKVQRSVCMLSNTTAIADAWARLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 400
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Nematostella
Match: EDO38064 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SDX8])

HSP 1 Score: 95.5153 bits (236), Expect = 1.709e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  333 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 425
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Nematostella
Match: EDO40779 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S698])

HSP 1 Score: 95.5153 bits (236), Expect = 1.974e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Medaka
Match: tuba1c (tubulin alpha-1B chain-like [Source:NCBI gene;Acc:101167538])

HSP 1 Score: 95.5153 bits (236), Expect = 1.611e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  218 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEV 310
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Medaka
Match: ENSORLT00000028969.1 (tubulin alpha-1C chain-like [Source:NCBI gene;Acc:101160296])

HSP 1 Score: 95.1301 bits (235), Expect = 6.057e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Medaka
Match: ENSORLT00000020157.2 (tubulin alpha-1A chain-like [Source:NCBI gene;Acc:101166346])

HSP 1 Score: 94.7449 bits (234), Expect = 6.120e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  308 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 400
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Medaka
Match: ENSORLT00000037900.1 (tubulin alpha-1A chain [Source:NCBI gene;Acc:105354455])

HSP 1 Score: 95.1301 bits (235), Expect = 6.369e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Ensembl Medaka
Match: tuba8l3 (tubulin alpha chain [Source:NCBI gene;Acc:101168255])

HSP 1 Score: 95.1301 bits (235), Expect = 6.401e-24
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN+Q P+ V    +A    +V +L N   I +    L  +F+++++KR F HW++G+ ME GEF+EAR+++A +  DY+EV
Sbjct:  343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEV 435
[Close]
BLAST of Tubulin alpha chain vs. Planmine SMEST
Match: SMESG000081292.1 (SMESG000081292.1)

HSP 1 Score: 160.614 bits (405), Expect = 3.254e-48
Identity = 76/97 (78.35%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEVCYIP 291
            FV  CPTGFKIGIN Q PSYVK S+MATSN S TLL N  TIKQPLLDL+SRF+ILFSKR F HWF+G+ ME GEFNEARDEI+TIIIDY+EVCYIP
Sbjct:  342 FVDWCPTGFKIGINCQPPSYVKGSEMATSNKSATLLANGSTIKQPLLDLLSRFDILFSKRSFVHWFVGEGMEEGEFNEARDEISTIIIDYEEVCYIP 438
[Close]
BLAST of Tubulin alpha chain vs. Planmine SMEST
Match: SMESG000016878.1 (SMESG000016878.1)

HSP 1 Score: 105.916 bits (263), Expect = 2.694e-28
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV+ CPTGFK+GIN Q P+ V SS+MA ++ +VTL+ N   I+Q       +F++LFSKR F HW++G+ ME GEFNEA+DE+  +I DY ++
Sbjct:  201 FVNWCPTGFKLGINSQPPTIVPSSEMAPTSRNVTLITNSTAIEQVWQGFCQKFDVLFSKRSFVHWYVGEGMEEGEFNEAKDEVNALIQDYADI 293
[Close]
BLAST of Tubulin alpha chain vs. Planmine SMEST
Match: SMESG000010593.1 (SMESG000010593.1)

HSP 1 Score: 105.531 bits (262), Expect = 1.007e-27
Identity = 50/93 (53.76%), Postives = 66/93 (70.97%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEV 279
            FV  CPTGFK+GIN Q P     S++A S+ SVT+L N  +IK     ++S+F+ILFSKR F HW++G+ ME GEFNEARDE+  I +DY E+
Sbjct:  342 FVDWCPTGFKLGINNQPPIMAPGSEIAPSDKSVTMLANSTSIKDIWEKIMSKFDILFSKRSFVHWYVGEGMEEGEFNEARDELNGIYLDYCEL 434
[Close]
BLAST of Tubulin alpha chain vs. Planmine SMEST
Match: SMESG000009421.1 (SMESG000009421.1)

HSP 1 Score: 105.531 bits (262), Expect = 1.264e-27
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEVC 282
            FV  CPTGFK+GIN Q P+ V  S++A +  SVT+L N   + Q   ++  +F++LFSKR F HW++G+ ME GEFNEA+DE+ ++I DY+E+ 
Sbjct:  342 FVEWCPTGFKLGINCQPPTAVPGSELAQTIRSVTMLSNTTAVSQIWGNIGRKFDVLFSKRSFVHWYVGEGMEEGEFNEAKDEMTSLIQDYEEIA 435
[Close]
BLAST of Tubulin alpha chain vs. Planmine SMEST
Match: SMESG000057667.1 (SMESG000057667.1)

HSP 1 Score: 104.375 bits (259), Expect = 2.858e-27
Identity = 50/98 (51.02%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    1 FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLVSRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEVCYIPE 294
            FV  CPTGFK+GIN   P+ V  S +A ++ SVT+L N   I Q  + L  +F++LF+KR F HWF+G+ ME GEFNEARD + +II DY+EV    E
Sbjct:  342 FVDWCPTGFKVGINSFPPTTVPGSGLAQTSRSVTMLSNSTAICQMWVKLNKKFDLLFAKRSFVHWFVGEGMEEGEFNEARDNLDSIIKDYEEVALTEE 439
The following BLAST results are available for this feature:
BLAST of Tubulin alpha chain vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
TUBA87.374e-2443.01tubulin alpha 8 [Source:HGNC Symbol;Acc:HGNC:12410... [more]
TUBA89.984e-2443.01tubulin alpha 8 [Source:HGNC Symbol;Acc:HGNC:12410... [more]
TUBA3C1.070e-2343.01tubulin alpha 3c [Source:HGNC Symbol;Acc:HGNC:1240... [more]
TUBA3D1.070e-2343.01tubulin alpha 3d [Source:HGNC Symbol;Acc:HGNC:2407... [more]
TUBA4A1.102e-2343.01tubulin alpha 4a [Source:HGNC Symbol;Acc:HGNC:1240... [more]
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BLAST of Tubulin alpha chain vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
tba-51.123e-2444.09Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:... [more]
tba-91.013e-2341.94Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:... [more]
mec-121.077e-2343.01Tubulin alpha-3 chain Detyrosinated tubulin alpha-... [more]
tba-61.159e-2340.86Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:... [more]
tba-72.400e-2341.94Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:... [more]
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BLAST of Tubulin alpha chain vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
alphaTub84B5.283e-2443.01gene:FBgn0003884 transcript:FBtr0081639[more]
alphaTub84D1.044e-2343.01gene:FBgn0003885 transcript:FBtr0081538[more]
alphaTub85E2.134e-2343.01gene:FBgn0003886 transcript:FBtr0082087[more]
alphaTub67C3.079e-2343.01gene:FBgn0087040 transcript:FBtr0076393[more]
CG77941.054e-1536.56gene:FBgn0038565 transcript:FBtr0083540[more]
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BLAST of Tubulin alpha chain vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
tuba8l41.340e-2443.01tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-... [more]
tuba8l6.979e-2443.01tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-03... [more]
tuba1b6.979e-2443.01tubulin, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030822... [more]
tuba1b6.979e-2443.01tubulin, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030822... [more]
si:ch73-199e17.17.049e-2443.01si:ch73-199e17.1 [Source:ZFIN;Acc:ZDB-GENE-100921-... [more]
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BLAST of Tubulin alpha chain vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
tubal3.13.156e-2444.09tubulin, alpha 4 [Source:NCBI gene;Acc:407878][more]
jmjd83.583e-2444.09jumonji domain containing 8 [Source:Xenbase;Acc:XB... [more]
tuba3e4.688e-2444.09tubulin alpha 3e [Source:NCBI gene;Acc:548558][more]
tuba3e4.985e-2444.09tubulin alpha 3e [Source:NCBI gene;Acc:548558][more]
hspb15.025e-2443.01heat shock protein family B (small) member 1 [Sour... [more]
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BLAST of Tubulin alpha chain vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Tuba3a7.346e-2443.01tubulin, alpha 3A [Source:MGI Symbol;Acc:MGI:10954... [more]
Tuba3b7.346e-2443.01tubulin, alpha 3B [Source:MGI Symbol;Acc:MGI:10954... [more]
Tuba1c7.456e-2443.01tubulin, alpha 1C [Source:MGI Symbol;Acc:MGI:10954... [more]
Tuba4a7.567e-2443.01tubulin, alpha 4A [Source:MGI Symbol;Acc:MGI:10954... [more]
Tuba87.684e-2443.01tubulin, alpha 8 [Source:MGI Symbol;Acc:MGI:185822... [more]
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BLAST of Tubulin alpha chain vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P02553|TBA_LYTPI3.275e-2543.01Tubulin alpha chain (Fragment) OS=Lytechinus pictu... [more]
sp|P24634|TBA2_EMENI4.420e-2445.16Tubulin alpha-2 chain OS=Emericella nidulans (stra... [more]
sp|P24635|TBA_OCTVU8.625e-2441.94Tubulin alpha chain (Fragment) OS=Octopus vulgaris... [more]
sp|P53372|TBA1_PNECA1.489e-2344.09Tubulin alpha chain OS=Pneumocystis carinii OX=475... [more]
sp|P09645|TBA8_CHICK1.610e-2343.01Tubulin alpha-8 chain (Fragment) OS=Gallus gallus ... [more]
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BLAST of Tubulin alpha chain vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1Y2HXP42.723e-2444.09Alpha tubulin OS=Catenaria anguillulae PL171 OX=76... [more]
A0A0R3R8446.271e-2444.21Tubulin_C domain-containing protein OS=Brugia timo... [more]
A0A3P7KBW57.913e-2444.94Tubulin_C domain-containing protein (Fragment) OS=... [more]
A0A182ESQ98.138e-2444.94Tubulin_C domain-containing protein OS=Onchocerca ... [more]
A0A086QEX98.883e-2444.68Putative alpha-tubulin I (Fragment) OS=Toxoplasma ... [more]
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BLAST of Tubulin alpha chain vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSAMXT00000005818.26.014e-2443.01pep primary_assembly:Astyanax_mexicanus-2.0:22:146... [more]
ENSAMXT00000019222.26.472e-2443.01tubulin alpha-1 chain [Source:NCBI gene;Acc:103031... [more]
si:ch211-114n24.66.539e-2443.01tubulin alpha-1A chain-like [Source:NCBI gene;Acc:... [more]
ENSAMXT00000019223.26.637e-2443.01tubulin alpha-1 chain [Source:NCBI gene;Acc:103031... [more]
ENSAMXT00000042562.16.637e-2443.01tubulin alpha chain [Source:NCBI gene;Acc:10303831... [more]
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BLAST of Tubulin alpha chain vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tubulin alpha chain vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
TUB11.551e-2240.86Alpha-tubulin; associates with beta-tubulin (Tub2p... [more]
TUB31.734e-2241.94Alpha-tubulin; associates with beta-tubulin (Tub2p... [more]
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BLAST of Tubulin alpha chain vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO293793.850e-2543.01Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO293787.388e-2543.01Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO447661.330e-2444.09Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO380641.709e-2443.01Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO407791.974e-2443.01Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Tubulin alpha chain vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
tuba1c1.611e-2443.01tubulin alpha-1B chain-like [Source:NCBI gene;Acc:... [more]
ENSORLT00000028969.16.057e-2443.01tubulin alpha-1C chain-like [Source:NCBI gene;Acc:... [more]
ENSORLT00000020157.26.120e-2443.01tubulin alpha-1A chain-like [Source:NCBI gene;Acc:... [more]
ENSORLT00000037900.16.369e-2443.01tubulin alpha-1A chain [Source:NCBI gene;Acc:10535... [more]
tuba8l36.401e-2443.01tubulin alpha chain [Source:NCBI gene;Acc:10116825... [more]
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BLAST of Tubulin alpha chain vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000081292.13.254e-4878.35SMESG000081292.1[more]
SMESG000016878.12.694e-2850.54SMESG000016878.1[more]
SMESG000010593.11.007e-2753.76SMESG000010593.1[more]
SMESG000009421.11.264e-2748.94SMESG000009421.1[more]
SMESG000057667.12.858e-2751.02SMESG000057667.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30027808 ID=SMED30027808|Name=Tubulin alpha chain|organism=Schmidtea mediterranea sexual|type=transcript|length=342bp
TTTGTCCATTTGTGTCCTACGGGATTTAAAATAGGCATCAACTTTCAGTC
ACCCTCGTATGTTAAAAGTTCTAAAATGGCTACTTCCAATACAAGTGTAA
CCTTACTTGGGAATGATATCACAATCAAACAACCGTTATTGGATTTGGTA
TCAAGATTTAATATTTTATTTTCAAAACGTTATTTTGATCATTGGTTTAT
CGGAAAATACATGGAGGTAGGAGAATTTAATGAAGCGAGAGATGAGATAG
CCACTATAATAATTGATTATGATGAAGTGTGTTACATTCCTGAAATTCGA
AAAGCCAAAAGAACAAGATGCAGCAAAAAGACGAAAACTTGA
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protein sequence of SMED30027808-orf-1

>SMED30027808-orf-1 ID=SMED30027808-orf-1|Name=SMED30027808-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=114bp
FVHLCPTGFKIGINFQSPSYVKSSKMATSNTSVTLLGNDITIKQPLLDLV
SRFNILFSKRYFDHWFIGKYMEVGEFNEARDEIATIIIDYDEVCYIPEIR
KAKRTRCSKKTKT*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002452Alpha_tubulin
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR023123Tubulin_C
IPR008280Tub_FtsZ_C
Vocabulary: cellular component
TermDefinition
GO:0005874microtubule
GO:0005737cytoplasm
GO:0005856cytoskeleton
Vocabulary: molecular function
TermDefinition
GO:0005200structural constituent of cytoskeleton
GO:0005525GTP binding
GO:0000166nucleotide binding
GO:0003924GTPase activity
Vocabulary: biological process
TermDefinition
GO:0007017microtubule-based process
GO:0007010cytoskeleton organization
GO:0007126meiotic nuclear division
GO:0030437ascospore formation