Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30027800 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Homology
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: CU638714.1 (pep chromosome:GRCz11:24:19863246:19868789:1 gene:ENSDARG00000100303.2 transcript:ENSDART00000165242.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CU638714.1) HSP 1 Score: 98.9821 bits (245), Expect = 7.084e-20 Identity = 69/225 (30.67%), Postives = 114/225 (50.67%), Query Frame = 2 Query: 4646 EIMFQLKRADNTSPGIDGIQ---YRDXXXXXXXXXXXTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVL 5311 E M QL ++ SPGIDG+ YR FL K++P S + L PK G + +WRP++LL + YK+ + CLA+R+ + + L+ Q +++ +L ++ S + L + LD + AF V H Y++++L+ G GE+F S ++LLYS+ G L+ +PI +G++QGCP+S L++L I P+L Sbjct: 484 EAMQQL--SNGRSPGIDGLPVEFYRQFWNEIGMDLYEVFL--SCFKEKLLPLSCRRAVLSLLPKK---GDLCLLKNWRPVSLLCLDYKILSKCLANRIMHCLQF--LIENDQTYCVPDRSIIDNIFMLRDVVDFSHLTSK-DLGVLSLDQEKAFDRVDHGYLFNVLKNFGFGEEFLSYIKLLYSNVFIMVKAGGALSAQVPIGRGIRQGCPLSGQLYSLMIEPLL 698
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: CABZ01033394.1 (pep chromosome:GRCz11:13:6032844:6038477:-1 gene:ENSDARG00000101795.2 transcript:ENSDART00000166130.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CABZ01033394.1) HSP 1 Score: 95.5153 bits (236), Expect = 7.454e-19 Identity = 71/248 (28.63%), Postives = 121/248 (48.79%), Query Frame = 2 Query: 4634 FSNFEIMFQLKRAD-NTSPGIDG--IQYRDXXXXXXXXXXXTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVK 5368 S E++ LK +PGIDG I++ + L L N+ + +P S + L PK G ++ +WRP++LL +K+ + LA+RL I +++H Q +++ S++ L+ S Y N L + +D + AF V H Y+W+ L G G F ++++LY D + L+ I +G++QGC +S +L++LAI P+L + RS E FM+ V+ Sbjct: 478 LSELELLTALKAMQPGKAPGIDGLPIEFYKIFWDVLGEDFLAVL-NESLTEGSLPLSCRRAVVTLLPKK---GDLQEIKNWRPVSLLCSDFKILSKTLANRLKNVIG--HIIHPDQTYCVPGRSIMDNISLVRDILDLSSYF-NLDLGLISIDQEKAFDRVEHQYLWNTLEAFGFGSGFIGMIKVLYQDIESVLKINGGLSAPFKINRGIRQGCALSGMLYSLAIEPMLRKL-RSRIEGFMLANKSVQ 717
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: si:dkey-187k19.2 (si:dkey-187k19.2 [Source:ZFIN;Acc:ZDB-GENE-131121-68]) HSP 1 Score: 93.2041 bits (230), Expect = 1.810e-18 Identity = 66/209 (31.58%), Postives = 106/209 (50.72%), Query Frame = 2 Query: 4676 NTSPGIDGIQYRDXXXXXXXXXXXTF-LFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAI 5299 N SPG DG+ L + F ++ + I K +P S K L PKPNKD D +WRPI LL+V YK+ + A RL +N ++ Q G + ++ L++S ++ L + +LD AF ++ H +M+ L++ G G+ F SI++L + D ++ + P + PI +GV+QGCPI+ LF L + Sbjct: 185 NKSPGSDGLSVEFYLHFWNIIENPLFEMYKESIELKELPTSLKQGLITLLPKPNKDLMILD--NWRPITLLNVDYKLLSLIYAKRLKEGLN--EIISEYQTGFMAGRHISWNIRLILDLLDYSNLIESEALLL-FLDFHKAFDTIEHQFMFMALKYFGFGDRFISIMELFHRDINSSINLYPNTSKRFPICRGVRQGCPIAPFLFLLVV 388
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: BX323564.1 (pep chromosome:GRCz11:2:10597810:10600950:-1 gene:ENSDARG00000098557.2 transcript:ENSDART00000160216.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX323564.1) HSP 1 Score: 92.0485 bits (227), Expect = 6.827e-18 Identity = 66/209 (31.58%), Postives = 105/209 (50.24%), Query Frame = 2 Query: 4676 NTSPGIDGIQYRDXXXXXXXXXXXTF-LFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAI 5299 N SPG DG+ L + F ++ + I K +P S K L PKPNKD D +WRPI LL+V YK+ + A RL N ++ Q G + ++ L++S ++ L + +LD AF ++ H +M+ L++ G G+ F SI++L + D ++ + P + PI +GV+QGCPI+ LF L + Sbjct: 185 NKSPGSDGLSVEFYLHFWNIIENPLFEMYKESIELKELPTSLKQGLITLLPKPNKDLMILD--NWRPITLLNVDYKLLSLIYAKRLKE--GLNEIISEYQTGFMAGRHISWNIRLILDLLDYSNLIESEALLL-FLDFHKAFDTIEHQFMFMALKYFGFGDRFISIMELFHRDINSSINLYPNTSKRFPICRGVRQGCPIAPFLFLLVV 388
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: BX284696.1 (pep chromosome:GRCz11:7:42935126:42939263:1 gene:ENSDARG00000099710.2 transcript:ENSDART00000157747.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX284696.1) HSP 1 Score: 92.0485 bits (227), Expect = 9.751e-18 Identity = 90/322 (27.95%), Postives = 147/322 (45.65%), Query Frame = 2 Query: 4652 MFQLKRADNTSPGIDGIQYRDXXXX-XXXXXXXTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPV-LEAVSRSDCEPFMIGESPVKXXXXXXXXXXXXK-SVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGE 5608 +F +K+ N SPGIDG +L L+N+ I K + + K L PKP KD D +WRPI LL+V YK+ A ++RL +N L+ + G + + +N L L N I +LD AF ++ H ++ L+ G G F +++++ Y D S+ + +++GV+QGCPIS LF L + + ++ D + I E +KI ADD L K S + I +I + A G +KC L L + ++++N +KK + +YLG+ + + Sbjct: 466 LFSMKK--NKSPGIDGFSVEFYTHFWYLIQDILLILYNECIAEKEMSTTMKQGIISLIPKPEKDSLLID--NWRPITLLTVDYKILALVFSNRLKTKLN---LMITESQSGFLNGRHISNNIRLVLDLIDYADFINSKAIIFFLDFYKAFDTIEHKFLLHSLKKFGFGSTFINVIEMFYKDISSSIIINMFTSQRFTLERGVRQGCPISPFLFILVTELLSISLINNQDLKGINIFEREIKISQLADDTTLFLKDSYQINDAIKSIKTFSDAS-GLHLNLDKCEILTLYDCN---DLILNGIPVKKTV-----KYLGIYINK 771
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: ENSXETT00000002428.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:3:15907829:15913358:1 gene:ENSXETG00000006437.1 transcript:ENSXETT00000002428.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 99.3673 bits (246), Expect = 6.863e-20 Identity = 67/195 (34.36%), Postives = 101/195 (51.79%), Query Frame = 2 Query: 4748 TFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKG--GSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSR 5326 T ++ + I I+P+S +L PKP KD + S+RPI+LL+ K++A LA RL I T L++ Q G ++ L+ +L S AIA LDI AF +V Y+W +L+ +G G F +++QLLY + T N + +G +QGCP+S +LFALAI P +AV + Sbjct: 489 TKMYGEAISTGILPESMYEAAIILLPKPGKDPQL--CESFRPISLLTTDVKIYAKILARRLARVIKT--LVNPDQIGFIPTKTTALNTRRLYLNLSLTPSNTGNR---AIAALDIAKAFDTVEWSYLWCVLKQLGFGPTFINMVQLLYKSPRATLRINSLCTSNFTLSRGTRQGCPLSPLLFALAIEPFAQAVRK 676
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: rpl22l1 (ribosomal protein L22 like 1 [Source:Xenbase;Acc:XB-GENE-6073103]) HSP 1 Score: 91.2781 bits (225), Expect = 5.827e-19 Identity = 60/194 (30.93%), Postives = 98/194 (50.52%), Query Frame = 2 Query: 4754 LFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKG--GSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRS 5329 LFN + +PDS + ++ PKP KD + + +S+RPI+L++ K+ A LA RL I L+ I Q G +R + ++ H IA LD + AF SV Y+W+ L+ +G E+FT +Q LY D ++ +++G +QGCP+S +LFA+A+ P+ + +S Sbjct: 18 LFNDVREGAPLPDSMRRAMIIVLPKPGKDPR--ECASYRPISLMNCDAKILAKILARRLNQVIT--QLIEIDQSGFIPTRTTDINIRRLYTNLSVTHDNAGSRV---IATLDNEKAFDSVEWAYLWATLQSMGFKENFTKWIQALYRDPEATIRTNQNISLPFALQRGTRQGCPLSPLLFAIAMEPLATLIRQS 204
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: slc7a1 (solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 [Source:Xenbase;Acc:XB-GENE-984439]) HSP 1 Score: 92.8189 bits (229), Expect = 1.963e-18 Identity = 67/203 (33.00%), Postives = 96/203 (47.29%), Query Frame = 2 Query: 4754 LFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGC-VEHNSILSAALEHSKYSKNCPLA-----IAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPF 5344 +F + ++P S + +L+ KD DV +WRPIALL+ K+ A L SRL + T LL SR C V+ SI A L + + C + LD AF V H Y+W+ LR G+ + F L +LY + +F N ++ GV+QGCP+S +L+ AI+P L AV D E F Sbjct: 206 VFRDCLGGGVLPPSMR-LSSLVLLSKGKDPS--DVKNWRPIALLNTDRKLLAKVLFSRLILFSGT--LL-------SREQFCTVKGRSIFGALLSIREVLETCKAQSSRRYVVGLDQAKAFDRVDHQYLWATLRKYGIPDQFVEWLTVLYREGESFPLVNGWRGENFGVEAGVRQGCPLSPLLYVFAIDPFLRAVQALDLEGF 396
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: ENSXETT00000032317.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:1:130520927:130524992:-1 gene:ENSXETG00000008594.1 transcript:ENSXETT00000032317.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 93.5893 bits (231), Expect = 4.693e-18 Identity = 63/189 (33.33%), Postives = 92/189 (48.68%), Query Frame = 2 Query: 4754 LFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAV 5320 LF + + P+S +L PK KD S+RPI+LL+ K+FA LA RL+ I ++H Q G + L L H+ + AIA LDI AF +V Y+W +L G G+ + ++QLLY + TP + +G +QGCP+S +LFA+AI P +AV Sbjct: 491 LFKEAVQLGQFPESLYEAAIVLLPKQGKDPHL--CESFRPISLLTADVKIFAKVLARRLSRVIT--KIIHPDQIGFIPAKTAALNTRRLYLNLAHASAGQGAK-AIAALDITKAFDTVEWPYLWQVLTHFGFGKKYIQMVQLLYKYPVASIRINSLTTPAFALSRGTRQGCPLSPLLFAIAIEPFAQAV 674
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: ENSXETT00000040456.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:8:87387561:87390644:-1 gene:ENSXETG00000021299.1 transcript:ENSXETT00000040456.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 92.8189 bits (229), Expect = 5.092e-18 Identity = 63/189 (33.33%), Postives = 92/189 (48.68%), Query Frame = 2 Query: 4754 LFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAV 5320 LF + + P+S +L PK KD S+RPI+LL+ K+FA LA RL+ I ++H Q G + L L H+ + AIA LDI AF +V Y+W +L G G+ + ++QLLY + TP + +G +QGCP+S +LFA+AI P +AV Sbjct: 121 LFKEAVQLGQFPESLYEAAIVLLPKQGKDPHL--CESFRPISLLTADVKIFAKVLARRLSRVIT--KIIHPDQIGFIPAKTAALNTRRLYLNLAHASAGQGAK-AIAALDITKAFDTVEWPYLWQVLTHFGFGKKYIQMVQLLYKYPVASIRINSLTTPAFALSRGTRQGCPLSPLLFAIAIEPFAQAV 304
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|Q03278|PO21_NASVI (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Nasonia vitripennis OX=7425 PE=4 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 8.522e-18 Identity = 109/396 (27.53%), Postives = 178/396 (44.95%), Query Frame = 2 Query: 4754 LFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCE--PFMIGESPVKXXXXXXXXXXXXKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLP--------KVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSK-SNGNSNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATENGG 5908 LFN I+ + P + +T+L PK + G D + +RP+++ SV + F LA+R I + LL Q+ DG E+ S+LSA ++ ++ K L IA LD+K AF SV H + LR + + + + +Y ++ T I +GV+QG P+S +LF N V++AV R E F++G + L +ADD+ L+A++ E LQ + E G E P KC L L KV + N +I +L + ++YLGV P + D +++ + L Q++ +F+ R I L + SN + + I +R R L LP+ + + YF+ + GG Sbjct: 355 LFNMIMYHGQCPRRYLDSRTVLIPK--EPGTMDP-ACFRPLSIASVALRHFHRILANR----IGEHGLLDTRQRAFIVADGVAENTSLLSAMIKEARM-KIKGLYIAILDVKKAFDSVEHRSILDALRRKKLPLEMRNYIMWVYRNSKTRLEVVKTKGRWIRPARGVRQGDPLSPLLF----NCVMDAVLRRLPENTGFLMGAEKIGALVFADDLVLLAETREGLQASLSRIEAGLQEQGLEMMPRKCHTLALVPSGKEKKIKVETHKPFTVGNQEITQLGHADQWKYLGVVYN---SYGPIQVKINIAGDLQRVTAAPLKPQQRMAILGMFLIPRFIHKL--------VLGRTSNADVRKGDKI---IRKTVRGWLRLPHDTPIGYFHAPIKEGG 724
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|Q03274|PO22_POPJA (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.804e-15 Identity = 67/241 (27.80%), Postives = 114/241 (47.30%), Query Frame = 2 Query: 4646 EIMFQLKRADNTSPGIDGIQYRDXXXXXXXXXXXTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGP-ILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPV 5365 EI +K ++PG DG+ + + ++ +P W + +T L PK DG ++ S+WRPI + S + ++ LA RL + LH QKG +R DG + NS+L S+ + + LD++ AF +V H + L+ +G+ E ++ + SD++T GP T I I++GVKQG P+S LF ++ +L ++ + IGE + Sbjct: 10 EIQCAIKGWKPSAPGSDGLTVQAITRTRLPRN----FVQLHLLRGHVPTPWTAMRTTLIPK---DGDLENPSNWRPITIASALQRLLHRILAKRLEAAVE----LHPAQKGYARIDGTLV-NSLLLDTYISSRREQRKTYNVVSLDVRKAFDTVSHSSICRALQRLGIDEGTSNYITGSLSDSTTTIRVGPGSQTRKICIRRGVKQGDPLSPFLFNAVLDELLCSLQSTPGIGGTIGEEKI 238
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|P16423|POLR_DROME (Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 3.239e-12 Identity = 105/422 (24.88%), Postives = 185/422 (43.84%), Query Frame = 2 Query: 4676 NTSPGIDGIQYRDXXXXXXXXXXXTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHS-KYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKXXXXXXXXXXXXKSVEDLQKITNIAVRTAAEIGFEYRPEKC---GYLQLPK----VHIDSEILINNTKIKKLLSKEFYQYLGV---PVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNSNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATENGG 5908 ++SPG DGI + + L + N I+ +P S + +T+ PK + D +RPI++ SV+ + + LA+RL IN + Q+G DGC ++ +I+ L HS K+ ++C IA LD+ AF S+ H ++ LR G + F +Q Y T + + +GVKQG P+S ILF L ++ +L + +G + A+ADD+ L A++ LQ + + + + +G + +KC G PK V + +++I L + ++YLG+ G DI K ++L + L Q+L A + + +L + G L K++ +R R+ L LP +++ + ++GG Sbjct: 357 SSSPGPDGITPKSAREVPSGIMLR--IMNLILWCGNLPHSIRLARTVFIPKTVTAKRPQD---FRPISVPSVLVRQLNAILATRLNSSINWDPR----QRGFLPTDGCADNATIVDLVLRHSHKHFRSC--YIANLDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLLRTLPSEIGA--KVGNAITNAAAFADDLVLFAETRMGLQVLLDKTLDFLSIVGLKLNADKCFTVGIKGQPKQKCTVLEAQSFYVGSSEIPSLKRTDEWKYLGINFTATGRVRCNPAEDIGPK----LQRLTKAPLKPQQRLFALRTVLIPQLYHKLALGSVAIGVLRKTD----------KLIRYYVRRWLNLPLDVPIAFVHAPPKSGG 751
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|P14381|YTX2_XENLA (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 2.338e-10 Identity = 64/230 (27.83%), Postives = 96/230 (41.74%), Query Frame = 2 Query: 4676 NTSPGIDGIQYRDXXXXXXXXXXXTFLFNKIIVNKIIPDSWK----SFK----------TLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQK----GGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVL 5311 N SPG+DG+ T F + + + PD + +FK +L+ P K G + +WRP++LLS YK+ A ++ RL + ++H Q G + D N L L H LA LD + AF V H Y+ L+ G F L+ +Y+ LT + +GV+QGCP+S L++LAI P L Sbjct: 464 NKSPGLDGL---------------TIEFFQFFWDTLGPDFHRVLTEAFKKGELPLSCRRAVLSLLPKK-GDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLA--EVIHPDQSYTVPGRTIFD-----NVFLIRDLLHFARRTGLSLAFLSLDQEKAFDRVDHQYLIGTLQAYSFGPQFVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSGQLYSLAIEPFL 670
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|P08548|LIN1_NYCCO (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 8.984e-10 Identity = 53/209 (25.36%), Postives = 99/209 (47.37%), Query Frame = 2 Query: 4754 LFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKG---GSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDC-EPFMIGESPVK 5368 LF I I+P+++ L PKP KD + ++RPI+L+++ K+ L +R+ I ++H Q G GS+ G ++ ++H KN I +D + AF ++ H +M L+ IG+ F +++ +YS + + + P++ G +QGCP+S +LF + + + A+ + IG +K Sbjct: 494 LFQNIEKEGILPNTFYEANITLIPKPGKDPTRKE--NYRPISLMNIDAKILNKILTNRIQQHIK--KIIHHDQVGFIPGSQ--GWFNIRKSINV-IQHINKLKNKDHMILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAIREEKAIKGIHIGSEEIK 695
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: Q7YXU7 (ORF2 (Fragment) OS=Girardia tigrina OX=6162 PE=4 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 3.275e-63 Identity = 144/445 (32.36%), Postives = 231/445 (51.91%), Query Frame = 2 Query: 4646 EIMFQLKRADNTSPGIDGIQYRDXXXXXXXXXXXTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSK--------YSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAV-SRSDCEPFMIGESPVKXXXXXXXXXXXXKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDS-EILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREI---------KTGALSKSNGNSNRSVNI-----SSQLRGCFRKMLCLPNQSEVSYFYNATENGG 5908 +I +K A ++ G+D I Y D+ L DP G++L +F I+ N I P K+ +T++ PKP K Y D SSWRPI + S +Y++ L L WI N +L QK + +GC +HN++L+ ++ + +KN L I +LD +AFGSVP D + + + G+G ++++ LY D T +CG N+ + +GVKQGCP+SM+LF + IN ++ A+ + D + +G+ ++ILAYADDIALI+ S +DLQ++ A +G + P KC + +P + IL+N IK + + Y+YLG ++L + +T+ + S L QK+ AY+ F+HS+L F R I KT + ++ +S +S+ S QL F LP+ +FY + GG Sbjct: 285 QIAKYIKFASKSAAGLDWITYEDIKLGDPSGEILQPIFEYIVQNNICPSEGKASRTIMIPKPGK-SDYSDPSSWRPITITSAVYRLLMKYLTWELYNWILLNQMLSRSQKSLGKFEGCHDHNAMLNMLIQDVRRQTNPSNPINKNKRLYIVFLDFTNAFGSVPLDTLMYVPQRFGLGTSALTLIKNLYLDNYTNVTCGESKIENVKLNKGVKQGCPLSMLLFNIFINIIIRAIEAMPDVHGYPLGDMDIRILAYADDIALISDSHKDLQEMVYKAEYIGRILGLLFNPSKCALMDIPHDKKRTPPILVNGEMIKCVGKADPYKYLGTFRSWFRKLDIKELLQMMMDETKLITESNLHPHQKIHAYETFIHSQLPFHLRHSRIPFSDFITNRKTNKTTNNSNDSEKSIQKAYDPESGQL---FLNTFALPSGCAKDFFYITKDAGG 725 HSP 2 Score: 102.449 bits (254), Expect = 3.275e-63 Identity = 99/380 (26.05%), Postives = 166/380 (43.68%), Query Frame = 1 Query: 5926 LDEYHTQTITHFFRLLTSEC---------DYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGK-ESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCD----SYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLS--IFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHN----DCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRW 7005 LDEY Q+I + FRLL SE D +N+ G + +++ FN + H +R + AR+ +A + +++ V L +T ++ ++L K K +H +L ++L + +K S + SA +NK I + W FIHRAR L +F+ LCR C + ETMSHA+ +C + TL ERH+ +++++S +I +V L P+ IT S + +LV++KCP D+ +FE KY+ + ++ V P +V L T + G+LGS+ + S+ L +G + E+ + L NI S +W Sbjct: 732 LDEYLIQSIMYIFRLLGSEDPTLNSAIKHDLISHLNLK----------GFVNINFSQAISIFNSNFTDRTDHFSHLSRTEWARLQLARKKLKSTLAIQTNVCLINGHLVLTLSLENNVLLIDSKEKGDVKKIHASLMGFLRLAHLIRLQKHGWSKLLFSATTHHEILNKRILNGHVPYKIWYFIHRARLGLLPTKLFSV------SNLCRKCGGKKETMSHALVNCPMMQTLINERHDALEISLVQILSSKF--QGTVIRQKTYVNELRPD--------ITMESDTQYYLVEVKCPFDTKMSFELRTQQTTDKYNIIIEILEDVHPGKEVRLVTFIVGTLGSWGPQNSDFLRDLGFSKDEIDQVKTRLMLQNINSSCEQW 1085
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A4Y2Q0X5 (Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Araneus ventricosus OX=182803 GN=pol_1044 PE=4 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 1.767e-62 Identity = 144/424 (33.96%), Postives = 214/424 (50.47%), Query Frame = 2 Query: 4646 EIMFQLKRADNTSPGIDGIQYRDXXXXXXXXXXXTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKXXXXXXXXXXXXKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQL----PKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNSNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATENG 5905 E+ +L +A+N++PG D + Y L K L FN + + +P +WK T+L PK D D+ ++WRPIAL + IYK+F LA RL W N+L QKG + DG +EHN IL LE ++ K L +AWLD+ +AFG++PH ++ L+ G G+ F I++ +Y+D ST T I IK GVKQGCPIS +LF ++I+ +L V + ++ +ADD+ LI S EDLQ + ++ + IG P K L L P DS + IK +L EF ++LG PVG P S Y + +K+ +S+L WQK+ A K F IFP ++TG K + + +R +++L LP ++ Y Y T+ G Sbjct: 44 EVSKKLAKAENSAPGPDRLTYHHWRSLPQGHKFLATTFNVCLHFQKVPAAWKKTTTILIPKSLLD--LDNPANWRPIALSNTIYKIFTKVLAGRLQDWSTKFNVLSHCQKGFTPFDGVLEHNFILQTRLESARAHKK-DLCVAWLDVTNAFGALPHPLIYKALQAAGTGDQFIKIIKDIYTDCSTSILTNDSATSPISIKSGVKQGCPISGLLFNMSIDHILRRVQGDLTDHRILA--------FADDLCLIGDSREDLQDMLDVVFEEMSRIGLLLNPGKSFSLHLSASTPVNVPDSLFSLGPDTIKPILEFEFTKFLGKPVGFNP-VSDYSSFNNFADCAKKILDSQLSPWQKMDAMKSF-----IFPAMQFSMRTGQFKKEDWTL-----LDEAIRHAVKEILFLPERASNEYIYGHTKAG 445 HSP 2 Score: 74.3294 bits (181), Expect = 1.767e-62 Identity = 97/402 (24.13%), Postives = 170/402 (42.29%), Query Frame = 1 Query: 5908 ANCVDL---LDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNG-----KESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKP-----SLYITTAMRGTIILT--SDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCH-AEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDS-VNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSN--------IAHSARRWHFHKTGILVDP 7038 A CV L +E + F+LLTS + Q+ + +L+ R+ I P+ + D+ G ++ KPH + + AR+A + + ++ + P L I ++ R I+ T + LR+ S+VL +K ++ +A + S I ++ + SE+ FIHR R N L + G + CR C+ A ET+ H I C+VH RH+ + + + I+ ++ V R D+++ K++++D+ CP ++ ++ FE+ RKY L + + + E+ V G+LGS+ + L KI + R+ LK L K C N I H F + I+ DP Sbjct: 444 AGCVGLPISAEESDLNRVDSAFKLLTSHDEIVAQLALKNLRNSVAKRVRILNPTDDDMSDFMTGSLDIDEDDKPHSNPYSNIWTTARVA------SRRQKIQWLFSEGHPRLKFQDLIIKSSSRRKILFTIRNRLRQDRSQVLQ--------NKPDQGKAMECVAQSPISSHFIANGLY-TRFSEY--RFIHRTRLNLLPLNGLPWKDGPVKRCRRCNKANLETLPHVINHCEVHSRAWQLRHDSIQNRVVNAAENSKAEILSINK--KFVKEFNLRPDIILK--LDGKLYIIDIVCPFENRLDRFEKAKDEKRRKYQVLVDHFH--QQNITAEIIPIVVGALGSWDTENDRFLSKI-MSRSYLKKLSKLCVSDNIRWARDIYIEHVTGHRQFDVSAIIADP 821
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A4Y2XBD8 (Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Araneus ventricosus OX=182803 GN=pol_802 PE=4 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 2.773e-62 Identity = 142/424 (33.49%), Postives = 214/424 (50.47%), Query Frame = 2 Query: 4646 EIMFQLKRADNTSPGIDGIQYRDXXXXXXXXXXXTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKXXXXXXXXXXXXKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPK---VHIDSEIL-INNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNSNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATENG 5905 E+ +L RA+N++PG D + Y L K L FN + + +P W+ T+L PK D ++WRPIAL + IYK+F LA RL W ++L QKG + DG +EHN IL LE ++ K L +AWLD+ +AFG++PH ++ L G G+ F I+Q +Y+D ST T IPIK GVKQGCPIS +LF ++I+ +L + + ++ +ADD+ LI S EDLQ + ++ ++IG PEK L L V++ + + IK +L EF ++LG PVG P S Y + +K+ +S+L WQK+ A K F IFP ++TG K + + +R +++L LP ++ Y Y T+ G Sbjct: 1108 EVSKKLARAENSAPGPDRLTYHHWRSLPQGNKFLATSFNVCLHFQKVPAEWRKTTTILIPK--SLLNLDSPANWRPIALSNTIYKIFTKVLAGRLQDWSTKFDVLSHCQKGFTPFDGVLEHNFILQTRLESARAHKK-DLCVAWLDVTNAFGALPHPLIYKALHAAGTGDQFVKIIQDIYTDCSTSILTNDSSTGPIPIKSGVKQGCPISGLLFNMSIDHILRRIQGDFTDHRILA--------FADDLCLIGDSREDLQDMLDVVYDEMSKIGLLLNPEKSFSLHLSASTPVNVPGSLFSLGPDTIKPILEYEFTKFLGKPVGFNP-VSDYSSFNSFADCAKKILDSQLSPWQKMDAMKSF-----IFPATQFSMRTGQFKKEDWTL-----LDEAIRHAVKEILFLPERAANEYIYGHTKAG 1509 HSP 2 Score: 76.6406 bits (187), Expect = 2.773e-62 Identity = 99/402 (24.63%), Postives = 172/402 (42.79%), Query Frame = 1 Query: 5908 ANCVDL---LDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNG-----KESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSL-----YITTAMRGTIILT--SDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCH-AEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDS-VNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNI--------AHSARRWHFHKTGILVDP 7038 A CV L +E + F+LLTS + Q+ + +L+ R+ I P+ + D+ +G ++ KPH + + AR+A + + ++ + P L I ++ R I+ T + LR+ S+VL +K ++ +A + S I ++ + SE+ FIHRAR N L + G + CR C+ A ET+ H I C+VH RH+ + + I+ V+ V R D++I KI+++D+ CP ++ +++FE+ RKY L + + + E+ V G+LG++ + L KI + R+ LK + K C NI H F + I+ DP Sbjct: 1508 AGCVGLPISAEESDLNRVDSAFKLLTSHDEIVSQLALTNLRNSVAKRIRIPNPTDDDMSDFMSGSLDIDEDDKPHSNPYSNIWTTARVA------SRRQKIQWLFSEGHPQLKFQDLIIKSSSRRKILFTFRNRLRQDRSQVLQ--------NKPDQGKAMECVAQSPISSHFIANGLY-TRFSEY--RFIHRARLNLLPLNGLPWKDGPVKRCRRCNKANLETLPHVINHCEVHSRAWQLRHDSIQNRVVKAAEYSKAEILAVNR--KFVKEYNLRPDIIIK--LDGKIYIIDIVCPFENRLDSFEKAKDEKRRKYQVLVDHFH--QQNISAEIIPIVVGALGAWDTENDRFLSKI-MSRSYLKKMSKLCVSDNIRWARDIYVEHITGHRQFDVSAIIADP 1885
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A4Y2L367 (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 OS=Araneus ventricosus OX=182803 GN=PO21_39 PE=4 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 2.844e-61 Identity = 152/445 (34.16%), Postives = 231/445 (51.91%), Query Frame = 2 Query: 4598 CKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDXXXXXXXXXXXTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKXXXXXXXXXXXXKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYL----QLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNSNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATENGGQIAL 5920 C+ + L F+ E+ +L+ A NTSPG D I Y D + K L +FN + + IP SWK+ T+L PK G + ++WRPIAL S +YK+F CLA+RL+ W ++L QKG + HDG +EHN +L L+ ++ K + IAWLD+ +AFGS+PH+ ++ +L G G FT +++ +YS++ST LT +IPI GVKQGCPIS I+F + I+PV+ V + K+LA+ADD+ L+A S E+LQ + + +G P K L + P +S I+N +I+ + +F+++LG PVG P + D A+ TR L S L WQ++ A K F L FP R + + + I + +R + L LP ++ Y Y A+ G + L Sbjct: 58 CEDGRVPLLDTPFTVKEVKVKLQNAANTSPGPDRITYADWKTIPASVKFLVTVFNACVHFQRIPPSWKTSTTVLLPK---SGDPNIPNNWRPIALSSTMYKMFTKCLAARLSAWCERYDVLSKCQKGFTPHDGVIEHNYVLKNFLDSARRDKT-DVCIAWLDVTNAFGSIPHEAIFEMLSRSGAGLPFTELIRDIYSNSSTKILSDGGLTRDIPILSGVKQGCPISGIIFDMCIDPVIRGVQAEN--------QSHKVLAFADDLCLLANSPEELQLSLSFVNASLKRLGLALNPSKSVALYVSGRTPVGVRNSPFFIDNAQIRNIEEGDFHKFLGKPVGFNPCPDYKYLSDLAIIATR-LLESCLAPWQRIAALKTFFFPALQFPMRNAQF----------DKEKWAEIDAMIRPEIKNTLGLPERACNDYLY-ASRKVGAVGL 478 HSP 2 Score: 59.3066 bits (142), Expect = 2.844e-61 Identity = 87/368 (23.64%), Postives = 155/368 (42.12%), Query Frame = 1 Query: 5962 FRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRK----TTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFA-KHHNKGDKRLCRLCHAED-ETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSK------ERVDLMITDLSRKKIFLVDMKCPCDS-VNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGI 7026 F+LLTS+ + ++ + L RL +PS + D+ G+ R +F + + + + + D+ P L G + L S RK + L + DS L++ ++ V ++ + S + + + SE W F+H+ARTNTL + K +K CR C D ET++H + CK RHN S+ KN+ L C+L+ ++ +R DL+ R +++++D+ CP ++ + F + KY SL +++ K + + G+LGS+ K L K + ++ L L + C I S + H TG+ Sbjct: 494 FKLLTSKDPHVAELALAELLKTVKFRLRKPSPSDSDLGDFMTGE-------ARAAQFDNSNLWTCARRASARQGIRWEFVDNTPRLLF-----GDLTLKSANRKKLLFSLRDRLRLLRGDSLLARPDQGKVMEVVSQSAASSHFMANGDY-TRFSE--WRFVHKARTNTLPLNGNKPWDKTSNTACRGCDECDLETLAHVLNHCKGRSRGWQLRHNSI-----SDRVKNALLF----DGCTLISENQPIGPDGQRPDLVFR--KRNEVYIIDITCPFENRLEAFTAARNHKIEKYASLVPFFESM--GLKATIIPILVGALGSWDPKNDSFLRK-HMAKSFLHKLQRLCVSETIRWSRDIYVEHVTGV 832
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A4Y2WJK9 (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 OS=Araneus ventricosus OX=182803 GN=PO21_26 PE=4 SV=1) HSP 1 Score: 212.616 bits (540), Expect = 1.936e-60 Identity = 152/445 (34.16%), Postives = 231/445 (51.91%), Query Frame = 2 Query: 4598 CKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDXXXXXXXXXXXTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKXXXXXXXXXXXXKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQL----PKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNSNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATENGGQIAL 5920 C+ + L F+ E+ +L+ A NTSPG D I Y D + K L +FN + + IP SWK+ T+L PK G + ++WRPIAL S +YK+F CLA+RL+ W ++L QKG + HDG +EHN +L L+ ++ K + IAWLD+ +AFGS+PHD ++ +L G G FT +++ +YS+++T LT +IPI GVKQGCPIS I+F + I+PV+ V + K+LA+ADD+ L+A S E+LQ + + +G P K L + P +S I+N +I+ + +F+++LG PVG P + D A+ TR L S L WQ++ A K F L FP R + + + I + +R + L LP ++ Y Y A+ G + L Sbjct: 1077 CEEGRVPLLDTPFTVKEVKIKLQNAANTSPGPDRITYADWKTIPASVKFLVTVFNACVHFQRIPPSWKTSTTVLLPK---SGDANVPNNWRPIALSSTMYKMFTKCLAARLSAWCERYDVLSKCQKGFTPHDGVIEHNYVLKNFLDSARRDKT-DVCIAWLDVTNAFGSIPHDAIFEMLSRSGAGLPFTELIRDIYSNSTTKILSDGGLTRDIPILSGVKQGCPISGIIFDMCIDPVIRGVQAEN--------QSHKVLAFADDLCLLANSPEELQLSLSFVNASLKRLGLSLNPSKSVALHVSGRTPVGVRNSPFFIDNAQIRNIAEGDFHKFLGKPVGFNPCPEYKYLSDLAIIATR-LLESCLAPWQRIAALKTFFFPALQFPMRNAQF----------DKEKWAEIDAMIRPEIKNTLGLPERACNDYLY-ASRKVGAVGL 1497 HSP 2 Score: 53.9138 bits (128), Expect = 1.936e-60 Identity = 85/368 (23.10%), Postives = 154/368 (41.85%), Query Frame = 1 Query: 5962 FRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRK----TTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFA-KHHNKGDKRLCRLCHAED-ETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSK------ERVDLMITDLSRKKIFLVDMKCPCDS-VNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGI 7026 F+LLTS+ + + + L RL +PS + ++ +G+ R +F + + + + + D+ P L G + L S R+ + L + DS L++ ++ V ++ + S + + + SE W F+H+ARTNTL + K +K CR C D ET++H + CK RHN S+ KN+ L C+L+ ++ +R DL+ R +++++D+ CP ++ + F + KY SL + + K + + G+LGS+ K L K + ++ L L + C I S + H TG+ Sbjct: 1513 FKLLTSKDPHVADLALAELLKTVKFRLRKPSPSDSDLGEFMSGE-------ARAAQFDNSNLWTCARRASARQGIRWEFVDNSPRLLF-----GDLTLKSSNRRKLLFSLRDRLRLLRGDSLLARPDQGKVMEVVSQSAASSHFMANGDY-TRFSE--WRFVHKARTNTLPLNGNKPWDKTSNTACRGCDECDLETLAHVLNHCKGRSRGWQLRHNS-----ISDRVKNALLF----DGCTLISENQPIGPDGQRPDLVFR--KRNEVYIIDITCPFENRLEAFTAARNHKIEKYASLVPFFENM--GLKATIVPILVGALGSWDPKNDSFLRK-HMAKSFLHKLQRLCVSETIRWSRDIYVEHVTGV 1851
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000034831.1 (pep primary_assembly:Astyanax_mexicanus-2.0:3:16211297:16215948:1 gene:ENSAMXG00000034228.1 transcript:ENSAMXT00000034831.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 110.538 bits (275), Expect = 1.459e-23 Identity = 67/216 (31.02%), Postives = 111/216 (51.39%), Query Frame = 2 Query: 4676 NTSPGIDGIQYRDXXXXXXXXXXXTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIG-QKGG-SRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEA 5317 ++PG +G+ YR K L L + IIP W +L PK D +RPI+LL+V K+F S +A RL ++ NNL+ QK G + GC+EHNS++ ++ ++ K L + +LD+ +AFGSVPH +W F V E+ + +++ + D +S G +T ++ G+ GC IS++ F +A+ ++ A Sbjct: 387 GSAPGPNGVPYRSYKSAPDVLKFLWKLMAIVWKKGIIPKEWHRAGGVLIPKEKDSVAIDQ---FRPISLLNVEGKIFFSVVARRLATYLKRNNLIDTSVQKAGIAGFSGCIEHNSMIWHQIQTARAEKK-DLHVVFLDLANAFGSVPHALLWKAFNFFRVPEEISRLVKAYFEDIQFCFSVGECVTSWQRLEIGIMAGCTISLLAFTMAMEVIIRA 598
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000034560.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000712.1:195631:202616:-1 gene:ENSAMXG00000042811.1 transcript:ENSAMXT00000034560.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 104.375 bits (259), Expect = 1.397e-21 Identity = 113/427 (26.46%), Postives = 197/427 (46.14%), Query Frame = 2 Query: 4646 EIMFQLKRADNTSPGIDGIQYRDXXXXXXXXXXXTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKXXXXXXXXXXXXKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPK------VHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNSNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATENGG 5908 E + Q+KR NT+PG D I + L DP G+ L L+ +V ++P ++K +T L PK ++V +WRPI + S+I ++F+ +A RL N Q+G GC E+ +L + H K ++ LA+ ++D AF S+ H+++ S L + + ++Q Y D T +P+I +K GVKQG +S ILF LA++P+++++ + IG S V LA+ADD+ L++ S + ++ + G + KC + + V+ S + I + E +YLGV V + D+ + ++ + L +QK+ F RLI+ ++K L+ +G R+V + L LP + Y+ ++GG Sbjct: 433 ENLGQIKR--NTAPGPDRITRQMLSDWDPSGEKLERLYTAWMVAGVVPKAFKECRTTLIPKSTSKEALEEVGNWRPITIGSLILRLFSKIMAERLARACPINPR----QRGFISAPGCAENLKVLQGLIGHCKKERS-QLAVVFVDFARAFDSISHEHILSALGQRQLDQHVIKLIQSAYVDCVTRIIMDGAKSPDILMKVGVKQGDSMSPILFNLAMDPLIQSLENLG-SGYKIGGSSVTTLAFADDLVLLSSSWDGMRSNIALLDEFCERTGLRVQSRKCHGFLIRRGATSYTVNDCSPWDLGGEPIHLIEPHEVEKYLGVKVNPWVGITKPDLNSQLGEWVTRIGGAPLKPYQKVGLLNDFAIPRLIYLADHCDLKGVTLATLDGTIRRAV----------KGWLHLPLSTCGGLLYSRVQDGG 841
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000046127.1 (pep primary_assembly:Astyanax_mexicanus-2.0:7:16384999:16389616:1 gene:ENSAMXG00000035718.1 transcript:ENSAMXT00000046127.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 90.5077 bits (223), Expect = 7.436e-18 Identity = 55/169 (32.54%), Postives = 89/169 (52.66%), Query Frame = 2 Query: 4835 KDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWIN--TNNLLHIGQKGGSRHDG-CVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSD 5332 K G ++++WR + L+++ YK+FA L +RL ++ N G KG S D C+ I + L S + I LD K AF S+ +Y+W++L + F +++LLY ++ LT I I +GVKQGCP+S L+ LAINP+L ++ + + Sbjct: 144 KKGDEYELNNWRQVTLMNIEYKIFAKVLMNRLEKILDKIINEEQTCGIKGRSMWDNLCIIRELITNKHLNESGF------YILALDKKKAFDSISREYLWAVLERYNFPDVFIKMIKLLYLKSTVQVKVNGKLTEKIDICRGVKQGCPLSAALYVLAINPLLTSLKKEE 306
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000048276.1 (pep primary_assembly:Astyanax_mexicanus-2.0:17:7857318:7859867:1 gene:ENSAMXG00000040121.1 transcript:ENSAMXT00000048276.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 89.7373 bits (221), Expect = 2.685e-17 Identity = 57/165 (34.55%), Postives = 91/165 (55.15%), Query Frame = 2 Query: 4826 KPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAV 5320 KP KD + SS+RP++LL+ KVFA LA RL I +L+H Q G R ++ L LE + S+ A+ LD + AF + ++W++L+ G G F ++ LY++ S S G +++ +++G +QGCP+S LFALA+ P+ +AV Sbjct: 520 KPGKDST--ECSSYRPLSLLNTDVKVFAKVLAKRLDSVIP--DLIHSDQTGFIRSRLASDNLRRLFHILEFAP-SQMLGSAVLSLDAEKAFDRLEWPFLWAVLKRFGFGSAFIHMIFTLYTNPSACVSTGHMISAKFLLERGTRQGCPLSPFLFALAVEPLAQAV 679
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000039514.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02001049.1:157646:166348:-1 gene:ENSAMXG00000041595.1 transcript:ENSAMXT00000039514.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 88.9669 bits (219), Expect = 7.360e-17 Identity = 65/222 (29.28%), Postives = 112/222 (50.45%), Query Frame = 2 Query: 4682 SPGIDGIQYRDXXXXXXXXXXXTF-LFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPF 5344 +PGIDGI +F + + +P S S + +L+ P K G + +WRP++LL YK+ A CLA+RL ++T ++H Q +++ ++ ++ S C + + +D + AF V H Y++ L GV F S L +LYS+ S G L+ + +++G++QGCP+S L++LAI P+L + R+D + F Sbjct: 1223 APGIDGIPAEFFKSFWDFFGEDLLEVFRAVFIEGRLPVS--SSRAVLSLLPKK-GDLGLLKNWRPVSLLCTDYKILAKCLANRLKLCLHT--IIHPNQSYCIPSRTIMDNLFLVRDVIDLSNMDV-CEIGLLTIDQEKAFDRVDHLYLFKTLEAFGVQNVFLSWLNVLYSEASFILKVGGGLSEPLMMRRGIRQGCPLSGQLYSLAIEPLLSRL-RADMQGF 1437
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000036683.1 (pep primary_assembly:ASM223467v1:19:23029986:23032853:-1 gene:ENSORLG00000028041.1 transcript:ENSORLT00000036683.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 91.2781 bits (225), Expect = 1.140e-17 Identity = 65/219 (29.68%), Postives = 108/219 (49.32%), Query Frame = 2 Query: 4646 EIMFQLKRADN-TSPGIDGIQYRDXXXXXXXXXXXTF-LFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALA 5296 E++ LK+ +N SPG DG+ ++ + IV + + + K L PKPNKD + +WRPI LL+V YK+ A A RL N + ++ Q G ++ + ++ L++S++ + L I +LD AF +V H ++++ L+ G GE+F SI ++ Y D S+ P + I + V+QGCPIS F + Sbjct: 174 ELLNALKKMNNGKSPGNDGLSKEFYCHFWDVINPHLMEMYKECIVQQEMTATMKQGLITLIPKPNKDPVM--IENWRPITLLNVDYKILALVYAQRLKS--NLHEIISETQSGFMKNRHISNNIRLILDLLDYSEHIDSEAL-ILFLDFYKAFDTVEHPFLYNALKLFGFGENFISIAKMFYKDISSSILLYPNTSQRFSINRSVRQGCPISPFFFLIV 387
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000028058.1 (pep primary_assembly:ASM223467v1:18:21516917:21520645:1 gene:ENSORLG00000027382.1 transcript:ENSORLT00000028058.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 90.5077 bits (223), Expect = 1.989e-17 Identity = 65/219 (29.68%), Postives = 108/219 (49.32%), Query Frame = 2 Query: 4646 EIMFQLKRADN-TSPGIDGIQYRDXXXXXXXXXXXTF-LFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALA 5296 E++ LK+ +N SPG DG+ ++ + IV + + + K L PKPNKD + +WRPI LL+V YK+ A A RL N + ++ Q G ++ + ++ L++S++ + L I +LD AF +V H ++++ L+ G GE+F SI ++ Y D S+ P + I + V+QGCPIS F + Sbjct: 461 ELLNALKKMNNGKSPGNDGLSKEFYCHFWDVINPHLMEMYKECIVQQEMTATMKQGLITLIPKPNKDPVM--IENWRPITLLNVDYKILALVYAQRLKS--NLHEIISETQSGFMKNRHISNNIRLILDLLDYSEHIDSEAL-ILFLDFYKAFDTVEHPFLYNALKLFGFGENFISIAKMFYKDISSSILLYPNTSQRFSINRSVRQGCPISPFFFLIV 674
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000039015.1 (pep primary_assembly:ASM223467v1:1:17620203:17622875:-1 gene:ENSORLG00000024714.1 transcript:ENSORLT00000039015.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 88.1965 bits (217), Expect = 9.829e-17 Identity = 62/211 (29.38%), Postives = 102/211 (48.34%), Query Frame = 2 Query: 4682 SPGIDGIQYRDXXXXXXXXXXXTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKG--GSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPV 5308 SPG DG + ++N+ + +P++ L K +KD SS+RPI+LL+V +K+ + LASRL + + ++ + + G RH HN+ + HS P I LD + AF V +++ + G+G DF ++LLYS + L+P P+++G +QGCP+S LFA+AI P+ Sbjct: 174 SPGPDGFSVEYYKANSDLLAPVLEMYNEAFLKSSLPNTLSEATISLILKKDKDPLL--CSSYRPISLLNVDFKILSKVLASRLQHVLP--KIISLDKTGCMAGRHS---YHNTRRLLNIIHSPCCL-APEVIVSLDAEKAFDRVEWTFLYETMSRFGLGNDFIEWVKLLYSSPMASFRTNNTLSPPFPLRRGTRQGCPLSPALFAIAIEPL 376
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000034825.1 (pep primary_assembly:ASM223467v1:18:2674911:2678633:-1 gene:ENSORLG00000022021.1 transcript:ENSORLT00000034825.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 87.0409 bits (214), Expect = 2.458e-16 Identity = 95/365 (26.03%), Postives = 159/365 (43.56%), Query Frame = 2 Query: 4670 ADNTSPGIDGIQYRDXXXXXXXXXXXTFLFNKIIVN-KIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSK--NCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKXXXXXXXXXXXXKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEE----PDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFP 5743 A + SPG DG+ K L K I I+P + K L PKP KD + D + RPI+LL+ YK+ + ASRL N ++ Q G + G HN+I L+ Y++ I +LD AF +V H +M+ L G G +F S +Q +Y+DT++ ++P I +G+KQGCPIS +LF A + + S + + + ADD K + I + G + KC +L VH + +I+N ++ ++ +YLGV + ++ + + + L+K + + ++ ++ K+ SR I+P Sbjct: 467 ALDKSPGSDGLTINFYRHFWEHLKEQFLLVIKEISELNILPTTMKQGVITLIPKPGKDARLID--NLRPISLLNSDYKILTNIYASRLK--TGLNQIISDTQSGFLK--GRSIHNNI-RLVLDLIDYNQLIEDDGFILFLDFFKAFDTVEHKFMFQTLEIFGFGPNFISFVQTIYNDTNSVIILPNGISPRFLINKGIKQGCPISPLLFITATEMLSILIKNSGFSKLSVLGEQLLMTQLADDTPTFMKDSHQIPDIIQTVDFFSKASGLKLNLSKC---ELLPVHHSDQSVIHNISVRTVV-----KYLGVHITKDSKTMEEMNLWKTLEKCKVNLNMWSQRDISILGRVFLTKLECLSRFIYP 816
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000040357.1 (pep primary_assembly:ASM223467v1:14:28942701:28945517:1 gene:ENSORLG00000024817.1 transcript:ENSORLT00000040357.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 86.6557 bits (213), Expect = 2.569e-16 Identity = 62/210 (29.52%), Postives = 103/210 (49.05%), Query Frame = 2 Query: 4670 ADNTSPGIDGIQYRDXXXXXXXXXXXTF-LFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALA 5296 A SPG DGI + + + F FN+ I +++ + K L PKP KD D +WRPI LL YK+ A A+RL I+ ++ Q + H ++ L++++ L I +LD AF S+ H ++++ L+ G F +I+++ Y D S+ + + N P+ +GV+QGCPIS +LF ++ Sbjct: 477 ASGKSPGPDGITAEFYKHFWTDIREMLFEAFNECIDEQMLSPTMKRGIISLLPKPGKDVLLID--NWRPITLLCCDYKILAHIYANRLKSGIS--QIIDESQSAFIKGRHIHHHTRLILDILDYNQIIPQDSL-ILYLDFFKAFDSLEHAFLFNALKTFGFESKFCNIIKMFYKDISSNIAINRGFSNNFPVNRGVRQGCPISPLLFIIS 681
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000021486.1 (SMESG000021486.1) HSP 1 Score: 2693.69 bits (6981), Expect = 0.000e+0 Identity = 1371/1816 (75.50%), Postives = 1527/1816 (84.09%), Query Frame = 2 Query: 461 PKFENHKLSNIKLDNLNTTEKFSSVNFNKTDLKNSKTLRKLINSNSNIQRKDLPYFKSRNLEKTKINYQCFSRTLNKSEKLQLFRAFPNLNKKINTKESVENFQNLNNELIRINPSKNPLKIDGFVKFFYRNGNICVSINFSVNNKTEQLVKETILKTSIIDSNIITSYNNRLKLTGASTAIKSFLFVLSTKLSETATISNAKVRGEQINNCLNLLKKQKALPDYLMKSHIKYHNGDFVMLDLLSNSDLNVKKAILSSSELSRSQMRDLFKSFPELAELFFSESDCNTDKFKNLINNLKSEHGFPEQISFVGGKFIKTHIDKISEHLQTESESDIMFNLGLLDFIQMSKTDTLFHSLLTQPNSPSKLIDIIFYINYLNLKGTLAYISNATFDEYVKNYLRNCFLMHSITNIESSHSLGRDNIETWGPEMINMIPSSSYYFANCKERLLKLRQLNLSREIDKIHNIISPNTISEINNFLETVEVALPKKVDQLKALSKLGNKINEFSIESNFPDIDKAKRFLYFIIRDKKNLLVNNRFYFRISRNCSKICSANMSACITEIIDYLSPYITSVKDNQTVNTSVSATVENVSESVDPLLEVPSSPVTDTETFESPLKVDSETLKRKLSVDIDDNQSTTIVTNDIQQDVPQPKIIKKTRRNTVKPK*RCXXXXXXXXXXXXKETDADXXXXXXXXXXXXXXXXXHDPKIWFTDENIDKFLENHIRNSDFVSIKCFIVEILCANLEKDIFPIPENVFKAQVILCPLNINNAHWILFVYCKSSLMSYFVDPIFSNRHSFTNKTIALKITMALNELFDLKAAMTFHPHDDFKYQNNNYDCGPFICAYAMRISGEWQSFPESFVEIIRKEVHQFKLFPQQKDPKISGGGLPKFMEIIKRNGVKKISSASQAFLLKQNSCVSSLLIEWFKNKNNTTVLSPELTSKVIAQNNRYIRENVTFKQFSGIEHVISVIPNDMNWGLYLFSLVSGISYIFNFRNRTLTERLIGIGENMTDYLNKFFISDKKVTFNRDHNIDHISITLDDPHLFASAFIELVEMLIFENQISRTSISESLNSFKIQQANEICKNLNLLNFKITEEITSKYFKILKLDDNFMLLNATMCSAILDDCTQYLNEYLNYECVIKAQVIFAIVAPPKYREFLLIIDYNTDEYYILNPTTLSETENHLFICKSLRNKLNEIKETPGRVLNIGVFPHDIRGSGLVSKVLICAFIKHYVNDLPLVNLNLREIGNTISSLLPVINEYKKEQNSCKTKFNKINKGNLNLEMRXXXXXXXXXXVLNFNVNQIIDVINEQFPNRIKTTHKPYLGNKTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFHGNWNNPLKFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDXXXXXXXXXXXTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKXXXXXXXXXXXXKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNSNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATENGG 5908 P+FEN KLSNIKLDNLNTT+KFSSVNFNKTDLKNSKTLRKL N+NSNIQRK+ PYFKSRNLEKTK NYQCFSRTLNKSEKLQLFR+FPNLNKKI TKESVE FQNLNNELIRI PSKNPLKIDGF+KFFYRNGNICVSINFSVNNKTE LVK+TILKTSIIDSNIITSYNNRLK TGASTAIK FLFVLS KLSETATISNAKVRGEQINN LNLLKKQ+ALPDYLMKSHIKYH+GDFVMLDLLS+SDLNV A LSSSELSRSQMRDLFKSFPELAELFFSESDCNTDKFKNLINNLKSEHGFPEQISFVGGKFIK + K S+H Q E ESDIMFN+GLL+F +M DT SL +QP S K+IDIIF++NYL LKG L + SN ++ +YV NY+RNC ++SI++IE+ ++L D+IE W P ++ MIP SY+ ++CKERLL+LRQ LS EID++HNIISP TI IN+FL ++ P+K QLKAL L N IN ES+ I KAKRFL+F+IRDKK L+ +++ +RI +C KIC+ NM+ I II L +T Q + S S T+ N ++SV+ S + D E+ + +KR+L VDID+ +S I + + +I + ETDADST I N DP IWFTD++ID +L+NHI + +F SI CFIVEIL N +D+FPIPE VFKAQ+ILCPLNI+ HWILFVYCK+SL SYF+DPI RH F NKT AL++TMALN+LF+LKAAMTFHPH++F YQ N+YDCGP+ICAYAM ISG WQSFP+ F++IIRKEVHQ +LF QQKD K+SGGGLPKFMEIIKRNGV+K SSA+QAFLLKQNSC+SSLL E+FK + NTTVLSPELT ++AQN +IRENVTF+QF+GI+H+IS++PND NW L++FSLV G SYIFNF +R +TERLI IGENMT+YLNKF IS++KV F +HNI+H SIT DD LFASAFI L+E LIF Q+S T SE L S KI+QANEIC NLN +N KI EEIT+KYF LKL+ NFMLLN TMC+AILDDCT++L ++LNYE +IKAQVIFAI+APPK+RE LLIIDY TDEYYI+NPTTL TE+ +C+ RNK+NEIKETPGRV+N+G P+DIRGSGLVSK+LICAFIK+Y NDLPL+NLNLREIG ISSLLP+I+E KK S TK KI K NLNLE RK+KI L+ V + VN+IID+I QFP+R+K+ HKPYLGNKTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFHGNWNNPL FCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGN+NRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATE GG Sbjct: 4054 PEFENDKLSNIKLDNLNTTKKFSSVNFNKTDLKNSKTLRKLKNNNSNIQRKNSPYFKSRNLEKTKFNYQCFSRTLNKSEKLQLFRSFPNLNKKIKTKESVEKFQNLNNELIRITPSKNPLKIDGFLKFFYRNGNICVSINFSVNNKTEPLVKKTILKTSIIDSNIITSYNNRLKFTGASTAIKRFLFVLSNKLSETATISNAKVRGEQINNTLNLLKKQRALPDYLMKSHIKYHDGDFVMLDLLSDSDLNVGNATLSSSELSRSQMRDLFKSFPELAELFFSESDCNTDKFKNLINNLKSEHGFPEQISFVGGKFIKLNETKDSDHSQAEGESDIMFNIGLLNFHEMCLKDTTLRSLFSQPKSSEKIIDIIFHLNYLQLKGELKHTSNGSYGDYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSSEIDRLHNIISPETIKHINSFLSEIDKVYPQKATQLKALQNLSNNINAIKSESDDETIAKAKRFLFFVIRDKKKFLLGSKYSYRIPLHCRKICTTNMTTHIFSIIQSLLLTLTVSDSEQIADRSDSITLVNTTQSVEINPGTQSGSIVDISVVETG-STEHARVKRRLEVDIDEVESI------IHTTISKSALISE-------------------------ETDADSTIKIIEINKPLNESD-RDPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLFCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFVFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTESSQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIVRQFPDRVKSKHKPYLGNKTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFHGNWNNPLNFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNNNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATEKGG 5836 HSP 2 Score: 2615.11 bits (6777), Expect = 0.000e+0 Identity = 1345/1819 (73.94%), Postives = 1498/1819 (82.35%), Query Frame = 2 Query: 461 PKFENHKLSNIKLDNLNTTEKFSSVNFNKTDLKNSKTLRKLINSNSNIQRKDLPYFKSRNLEKTKINYQCFSRTLNKSEKLQLFRAFPNLNKKINTKESVENFQNLNNELIRINPSKNPLKIDGFVKFFYRNGNICVSINFSVNNKTEQLVKETILKTSIIDSNIITSYNNRLKLTGASTAIKSFLFVLSTKLSETATISNAKVRGEQINNCLNLLKKQKALPDYLMKSHIKYHNGDFVMLDLLSNSDLNVKKAILSSSELSRSQMRDLFKSFPELAELFFSESDCNTDKFKNLINNLKSEHGFPEQISFVGGKFIKTHIDKISEHLQTESESDIMFNLGLLDFIQMSKTDTLFHSLLTQPNSPSKLIDIIFYINYLNLKGTLAYISNATFDEYVKNYLRNCFLMHSITNIESSHSLGRDNIETWGPEMINMIPSSSYYFANCKERLLKLRQLNLSREIDKIHNIISPNTISEINNFLETVEVALPKKVDQLKALSKLGNKINEFSIESNFPDIDKAKRFLYFIIRDKKNLLVNNRFYFRISRNCSKICSANMSACITEIIDYLSPYITSVKDNQTVNTSVSATVENVSESVDPLLEVPSSPVTDTETFESPLKVDSETLKRKLSVDIDDNQSTTIVTNDIQQD-VPQPKIIKKTRRNTVKPK*RCXXXXXXXXXXXXKETDADXXXXXXXXXXXXXXXXXHDPKIWFTDENIDKFLENHIRNSDFVSIKCFIVEILCANLEKDIFPIPENVFKAQVILCPLNINNAHWILFVYCKSSLMSYFVDPIFSNRHSFTNKTIALKITMALNELFDLKAAMTFHPHDDFKYQNNNYDCGPFICAYAMRISGEWQSFPESFVEIIRKEVHQFKLFPQQKDPKISGGGLPKFMEIIKRNGVKKISSASQAFLLKQNSCVSSLLIEWFKNKNNTTVLSPELTSKVIAQNNRYIRENVTFKQFSGIEHVIS--VIPNDMNWGLYLFSLVSGISYIFNFRNRTLTERLIGIGENMTDYLNKFFISDKKVTFNRDHNIDHISITLDDPHLFASAFIELVEMLIFENQISRTSISESLNSFKIQQANEICKNLNLLNFKITEEITSKYFKILKLDDNFMLLNATMCSAILDDCTQYLNEYLNYECVIKAQVIFAIVAPPKYREFLLIIDYNTDEYYILNPTTLSETENHLFICKSLRNKLNEIKETPGRVLNIGVFPHDIRGSGLVSKVLICAFIKHYVNDLPLVNLNLREIGNTISSLLPVINEYKKEQNSCKTKFNKINKGNLNLEMRXXXXXXXXXXVLNFNVNQIIDVINEQFPNRIKTTHKPYLGNKTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFHGNWNNPLKFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDXXXXXXXXXXXTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKXXXXXXXXXXXXKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNSNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATENGG 5908 P+FEN KLSNIKLDNLNTT+KFSSVNFNKTDLKNSKTLRKL N+NSNIQRK+ PYFKSRNLEKTK NYQCFSRTLNKSEKLQLFR+FPNLNKKI TKESVE FQNLNNELIRI PSKNPLKIDGF+KFFYRNGNICVSINFSVNNK E LVK+TILKTSIIDSNIITSYNNRLK TGASTAIK FLFVLS KLSETATISNAK Q+ALPDYLMKSHIKYH+GDFVMLDLLS+SDLNV A LSSSELSRSQMRDLFKSFPELAELFFSESDCNTDKFKNLINNLKSEHGFPEQISFVGGKFIK + K S+H Q E ESDIMFN+GLL+F +M DT SL +QP S K+IDIIF++NYL LKG L + SN ++ +YV NY+RNC ++SI++IE+ ++L D+IE W P ++ MIP SY+ ++CKERLL+LRQ LS EID++HNIISP TI IN+FL ++ P+K QLKAL L N IN ES+ I KAKRFL+F+IRDKK L+ +++ +RI +C KIC+ NM+ I II L +T Q + S S T+ N ++SV+ S + D E+ + +KR+L VDID+ +S T+ QQ+ + + +I K ETDADST I N DP IWFTD++ID +L+NHI + +F SI CFIVEIL N +D+FPIPE VFKAQ+ILCPLNI+ HWILFVYCK+SL SYF+DPI RH F NKT AL++TMALN+LF+LKAAMTFHPH++F YQ N+YDCGP+ICAYAM ISG WQSFP+ F++IIRKEVHQ +LF QQKD K+SGGGLPKFMEIIKRNGV+K SSA+QAFLLKQNSC+SSLL E+FK + NTTVLSPELT ++AQ I H + ++PND NW L++FSLV G SYIFNF +R +TERLI IGENMT+YLNKF IS++KV F +HNI+H SIT DD LFASAFI L+E LIF Q+S T SE L S KI+QANEIC NLN +N KI EEIT+KYF LKL+ NFMLLN TMC+AILDDCT++L ++LNYE +IKAQVIFAI+APPK+RE LLIIDY TDEYYI+NPTTL TE+ +C+ RNK+NEIKETPGRV+N+G P+DIRGSGLVSK+LICAFIK+Y NDLPL+NLNLREIG ISSLLP+I+E KK S TK KI K NLNLE RK+KI L+ V + VN+IID+I QFP+R+K+ HKPYLGNKTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPF GNWNNPL FCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGN+NRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATE GG Sbjct: 1720 PEFENDKLSNIKLDNLNTTKKFSSVNFNKTDLKNSKTLRKLKNNNSNIQRKNSPYFKSRNLEKTKFNYQCFSRTLNKSEKLQLFRSFPNLNKKIKTKESVEKFQNLNNELIRITPSKNPLKIDGFLKFFYRNGNICVSINFSVNNKMEPLVKKTILKTSIIDSNIITSYNNRLKFTGASTAIKRFLFVLSNKLSETATISNAK---------------QRALPDYLMKSHIKYHDGDFVMLDLLSDSDLNVGNATLSSSELSRSQMRDLFKSFPELAELFFSESDCNTDKFKNLINNLKSEHGFPEQISFVGGKFIKLNETKDSDHSQAEGESDIMFNIGLLNFHEMCLKDTTLRSLFSQPKSSEKIIDIIFHLNYLQLKGELKHTSNGSYGDYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSSEIDRLHNIISPETIKHINSFLSEIDKVYPQKATQLKALQNLSNNINAIKSESDDETIAKAKRFLFFVIRDKKKFLLGSKYSYRIPLHCRKICTTNMTTHIFSIIQSLLLTLTVSDSEQIADRSDSITLVNTTQSVEINPGTQSGSIVDISVVETG-STEHARVKRRLEVDIDEVESIIHTTSGTQQNHISKSALISK-------------------------ETDADSTIKIIEINKPLNESD-RDPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLFCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQ----------------ISHSLEKIIVPNDSNWSLFVFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTESSQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIVRQFPDRVKSKHKPYLGNKTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFQGNWNNPLNFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNNNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATEKGG 3480 HSP 3 Score: 801.971 bits (2070), Expect = 0.000e+0 Identity = 385/385 (100.00%), Postives = 385/385 (100.00%), Query Frame = 1 Query: 5908 ANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEKMYLFKN 7062 ANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEKMYLFKN Sbjct: 5837 ANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEKMYLFKN 6221 HSP 4 Score: 792.341 bits (2045), Expect = 0.000e+0 Identity = 380/381 (99.74%), Postives = 381/381 (100.00%), Query Frame = 1 Query: 5908 ANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEKMY 7050 ANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEK+Y Sbjct: 3481 ANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEKIY 3861 HSP 5 Score: 442.195 bits (1136), Expect = 0.000e+0 Identity = 216/364 (59.34%), Postives = 269/364 (73.90%), Query Frame = 1 Query: 5908 ANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSAR 6999 A C+DLLDEYH QTI +FFRLLTS C Y++ IN SL VT PRLGIK P+L +S +W NGKESK +HSGRKTRF R R ++ +F + HNI + F + PS+ ITT++ GT I+ LRKT SK+LH AL DSYLSKWE S SN + SA+KL P +NK IFRS+L++F W FIHRARTNTLS FAK H G+ RLCR C +EDET+ H +Q+CK++ +L RHN CL I ++ K+ L+VVVDH CSLVP S ERVDL+IT+ +K I LVDMKCP DSV+NF+ VD LNL KY LK IQAVKPD+KVEL TC+ GSLGS KT ++L+K+GV+ + L+KECA+SNIAHSA+ Sbjct: 1162 AGCIDLLDEYHAQTIVYFFRLLTSTCGYSKTINTFSLLSVTSPRLGIKNPTLSQSFEWINGKESKLNHSGRKTRFHRLRTSIEYFSRVHNIKLLFEIFKQNPSIRITTSLTGTRIILPKLRKTLSKILHSALQDSYLSKWEMSNHSNLLVSAIKLCPLVNKLIFRSDLTDFEWKFIHRARTNTLSTFAKPHKAGEDRLCRRCKSEDETILHVLQTCKINQSLATNRHNACLIKIKDSI-KDPELLVVVDHKCSLVPTSSERVDLIITNTEKKTILLVDMKCPIDSVSNFQLVDNLNLEKYAKLKLDIQAVKPDYKVELHTCIMGSLGSIESKTEDLLLKMGVQPNRIIGLMKECAISNIAHSAK 1524 HSP 6 Score: 340.502 bits (872), Expect = 0.000e+0 Identity = 173/261 (66.28%), Postives = 212/261 (81.23%), Query Frame = 2 Query: 5126 SLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKXXXXXXXXXXXXKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNSNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATENGG 5908 +LL+ + V +F +ILQLLY+DTS+FY C + TP+IPIK+GVKQGCPISMILFA+AINPVLEA+S S+ PFMIG S V++LAYADDIALIA + DLQ + ++AV TA IGFEYRPEKC Y+Q PKV SEI++NN IKKL S EFYQYLGVP+G+ DQSPY+I+ K + DT+K+A+S L GWQKLKAYKIF+HSRLIFPFRTREIKT +L+ + NS +VN +SQLRG RK+L LPN SE+SYFYN+TENGG Sbjct: 901 TLLKHMNVSAEFVNILQLLYTDTSSFYQCNQMQTPDIPIKKGVKQGCPISMILFAIAINPVLEAISLSNTTPFMIGTSSVQVLAYADDIALIATNSSDLQTLFDLAVNTANMIGFEYRPEKCAYIQYPKVETVSEIIVNNVLIKKLASNEFYQYLGVPIGDNNDQSPYEIVSKVIEDTKKIAHSNLYGWQKLKAYKIFLHSRLIFPFRTREIKTSSLADPSRNSRINVNNTSQLRGHLRKILNLPNHSEISYFYNSTENGG 1161 HSP 7 Score: 598.201 bits (1541), Expect = 1.231e-172 Identity = 361/931 (38.78%), Postives = 546/931 (58.65%), Query Frame = 2 Query: 1964 INEFSIESNFPDIDKAKRFLYFIIRDKKNLLVNNRFYFRISRNCSKICSANMSACITEIIDYLSPYITSVKDNQTV--NTSVSATVENVSESVDPLLEVPSSPVTDTETFESPLKV---------DSETLKRKLSVDIDDNQSTTIVTND---IQQDVPQPKIIKKTRRNTVKPK*RCXXXXXXXXXXXXKETDADXXXXXXXXXXXXXXXXXHDPKIWFTDENIDKFLENHIRNSDFVSIKCFIVEILCANLEKDIFPIPENVFKAQVILCPLNINNAHWILFVYCKSSLMSYFVDPIFSNRHSFTNKTIALKITMALNELFDLKAAMTFHPHDDFKYQNNNYDCGPFICAYAMRISGEWQSFPESFVEIIRKEVHQFKLFPQQKDPKISG---GGLPKFMEIIKRNGVKKISSASQA--------FLLKQNSCVSSLLIEWFKNKNNTTVLSPELTSKVIAQNNRYIRENVTFKQFSGIEHVISVIPNDMNWGLYLFSLVSGISYIFNFRNRTLTERLIGIGENMTDYLNKFFISDKKVTFNRDHNIDHISITLDDPHLFASAFIELVEMLIFENQISRTSISESLNSFKIQQANEICKNLNLLNFKITEEITSKYFKILKLDDNFMLLNATMCSAILDDCTQYLNEYLNYECVIKAQVIFAIVAPPKYREFLLIIDYNTDEYYILNPTTLSETENHLFICKSLRNKLNEIKETPGRVLNIGVFPHDIRGSGLVSKVLICAFIKHYVNDLPLVNLNLREIGNTISSLLPVINEYKKEQNSCKTKFNKINKGNLNLEMRXXXXXXXXXXVLNFNVNQIIDVINEQFPN----RIKTTHKPYLG-NKTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFHGNWNNPLKFCKRSKQALNLELFSNFEIMFQLK 4666 IN+ I + D+ K+KRF+YF++RD K L+ N+ FR+ C+K C++ MS I+ II L P + +VKD + + + +EN+ + P++ + E + V ++ L V+ D N+S +N I +++ P + +RNTVK + K T + DP+IWF+D +ID +LE HI N IKCFIV ILC+N+++++ IP ++ A+++ CPLNINN+HWILFVYCK S SYF+DPI NR++ NK +ALKI +ALN F+LK A++++PH + +YQNNN+DCGPF CAYA+ IS + +FP+ F++ IR++VH+ ++ +I G GG M++ N K I+ + L Q CVSS++ ++++N +VLS ELT +IAQNN +I +NVTFKQF GI+H++ VIP +W L+++S+ S+IF+F RT+ +RLI IG +TDYLN+F + ++ V F +H+I H + D FAS FI L E L++E + + +SL+ K + EI LNL+N KIT++I +YF LKL D+++LLN T+C AI DDCTQY+ ++LN EC++KA VIFAI++PPK E LL+IDY+T+E+Y L+P T C ++ K+NE++E+ GR + G HDIRGSGL+SK+LICAFI++Y D L N+NL EIG ++SL+P+++ + + K N LNL+ RK KI L+ K+ + +V++II I P + K +PYLG N +P+K N +F+T+MK TV ++ N+ +V I P FQ+I+ NF W+N LKF K S + L L S+ EI+ L+ Sbjct: 4 INDEQIIDDTYDV-KSKRFIYFLLRDSKKYLIRNQ-TFRLFETCNKYCTSEMSQQISLIITKLKPIVINVKDVDLIEQDCDLDKPIENI-DITKPIVIEEIHCMKCNSILEKCILVREGMNVNICENCLLDAISVVEPDSNESNQTNSNHDSPITENIINPPTKRTGQRNTVKKQ-----------PSKPKSTICNKYLTIDN----------RDPEIWFSDNDIDWYLETHIDNPMHGYIKCFIVNILCSNIQEEVVAIPRSISNAEMVFCPLNINNSHWILFVYCKKSHSSYFIDPILKNRNNLINKQMALKINIALNRFFNLKIAVSYNPHKNLQYQNNNFDCGPFTCAYAVIISKDLDNFPDGFIDEIRRDVHRNQM-------EIVGNLIGGAKTKMDMSSFNFKKAIAKTKYSNNNPNTSNILKSQMPCVSSIICKYYENNCKVSVLSAELTLNLIAQNNSFIADNVTFKQFKGIDHILCVIPKFNDWCLFIYSIKLKHSHIFDFNYRTIDDRLIEIGVKITDYLNQFCL-NRNVKFLANHHISHSTFLSYDTQYFASHFIVLFEKLVYEIHLDCDKVYDSLSKIKTETCIEISPGLNLINGKITDKIIFEYFNKLKLSDDYILLNKTLCVAISDDCTQYMKDFLNIECMMKANVIFAIISPPKVHELLLVIDYSTEEHYYLSPVTTDLNVVSQHFCYNILIKINELRESKGRAMKTGHCRHDIRGSGLLSKILICAFIRNYALDYSLENINLHEIGKIVNSLVPIVDGSDNVKYEKREKLKAANTLKLNLKQRKEKINQLLIKLSDSDVDEIICTILTNIPRLENLQKKEFREPYLGKNHNKPKKFNNP---AEFLTNMKTTVYRILNDQSVKIEPPFQEIINNFTHPDVVPECWDNVLKFSKISDELLELTYISSEEILSNLQ 899 HSP 8 Score: 56.6102 bits (135), Expect = 3.539e-7 Identity = 41/73 (56.16%), Postives = 49/73 (67.12%), Query Frame = 3 Query: 192 NGNDFEYKLFILNEKSAEESIKYKDYXXXXXXXXXXXXXXXXXSEKSADTQGCDLEA*TYPQAVFWALDNGQS 410 NGND E K +N +ES YKD F N + IFI++NFSEKSAD QGCD EA T +AVFWA++NGQS Sbjct: 1631 NGNDLENKTPKMNGNRTKESFIYKD-FFNKNNLKNNIFIDKNFSEKSADMQGCDSEARTSSRAVFWAVNNGQS 1702 HSP 9 Score: 56.6102 bits (135), Expect = 3.539e-7 Identity = 41/73 (56.16%), Postives = 49/73 (67.12%), Query Frame = 3 Query: 192 NGNDFEYKLFILNEKSAEESIKYKDYXXXXXXXXXXXXXXXXXSEKSADTQGCDLEA*TYPQAVFWALDNGQS 410 NGND E K +N +ES YKD F N + IFI++NFSEKSAD QGCD EA T +AVFWA++NGQS Sbjct: 3965 NGNDLENKTPKMNGNRTKESFIYKD-FFNKNNLKNNIFIDKNFSEKSADMQGCDSEARTSSRAVFWAVNNGQS 4036
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000021486.1 (SMESG000021486.1) HSP 1 Score: 2575.05 bits (6673), Expect = 0.000e+0 Identity = 1331/1818 (73.21%), Postives = 1485/1818 (81.68%), Query Frame = 2 Query: 461 PKFENHKLSNIKLDNLNTTEKFSSVNFNKTDLKNSKTLRKLINSNSNIQRKDLPYFKSRNLEKTKINYQCFSRTLNKSEKLQLFRAFPNLNKKINTKESVENFQNLNNELIRINPSKNPLKIDGFVKFFYRNGNICVSINFSVNNKTEQLVKETILKTSIIDSNIITSYNNRLKLTGASTAIKSFLFVLSTKLSETATISNAKVRGEQINNCLNLLKKQKALPDYLMKSHIKYHNGDFVMLDLLSNSDLNVKKAILSSSELSRSQMRDLFKSFPELAELFFSESDCNTDKFKNLINNLKSEHGFPEQISFVGGKFIKTHIDKISEHLQTESESDIMFNLGLLDFIQMSKTDTLFHSLLTQPNSPSKLIDIIFYINYLNLKGTLAYISNATFDEYVKNYLRNCFLMHSITNIESSHSLGRDNIETWGPEMINMIPSSSYYFANCKERLLKLRQLNLSREIDKIHNIISPNTISEINNFLETVEVALPKKVDQLKALSKLGNKINEFSIESNFPDIDKAKRFLYFIIRDKKNLLVNNRFYFRISRNCSKICSANMSACITEIIDYLSPYITSVKDNQTVNTSVSATVENVSESVDPLLEVPSSPVTDTETFESPLKVDSETLKRKLSVDIDDNQSTTIVTNDIQQDVPQPKIIKKTRRNTVKPK*RCXXXXXXXXXXXXKETDADXXXXXXXXXXXXXXXXXHDPKIWFTDENIDKFLENHIRNSDFVSIKCFIVEILCANLEKDIFPIPENVFKAQVILCPLNINNAHWILFVYCKSSLMSYFVDPIFSNRHSFTNKTIALKITMALNELFDLKAAMTFHPHDDFKYQNNNYDCGPFICAYAMRISGEWQSFPESFVEIIRKEVHQFKLFPQQKDPKISGGGLPKFMEIIKRNGVKKISSASQAFLLKQNSCVSSLLIEWFKNKNNTTVLSPELTSKVIAQNNRYIRENVTFKQFSGIEHVIS--VIPNDMNWGLYLFSLVSGISYIFNFRNRTLTERLIGIGENMTDYLNKFFISDKKVTFNRDHNIDHISITLDDPHLFASAFIELVEMLIFENQISRTSISESLNSFKIQQANEICKNLNLLNFKITEEITSKYFKILKLDDNFMLLNATMCSAILDDCTQYLNEYLNYECVIKAQVIFAIVAPPKYREFLLIIDYNTDEYYILNPTTLSETENHLFICKSLRNKLNEIKETPGRVLNIGVFPHDIRGSGLVSKVLICAFIKHYVNDLPLVNLNLREIGNTISSLLPVINEYKKEQNSCKTKFNKINKGNLNLEMRXXXXXXXXXXVLNFNVNQIIDVINEQFPNRIKTTHKPYLGNKTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFHGNWNNPLKFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDXXXXXXXXXXXTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKXXXXXXXXXXXXKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNSNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATENGG 5908 P+FEN KLSNIKLDNLNTT+KFSSVNFNKTDLKNSKTLRKL N+NSNIQRK+ PYFKSRNLEKTK NYQCFSRTLNKSEKLQLFR+FPNLNKKI TKESVE FQNLNNELIRI PSKNPLKIDGF+KFFYRNGNICVSINFSVNNK E LVK+TILKTSIIDSNIITSYNNRLK TGASTAIK FLFVLS KLSETATISNAK Q+ALPDYLMKSHIKYH+GDFVMLDLLS+SDLNV A LSSSELSRSQMRDLFKSFPELAELFFSESDCNTDKFKNLINNLKSEHGFPEQISFVGGKFIK + K S+H Q E ESDIMFN+GLL+F +M DT SL +QP S K+IDIIF++NYL LKG L + SN ++ +YV NY+RNC ++SI++IE+ ++L D+IE W P ++ MIP SY+ ++CKERLL+LRQ LS EID++HNIISP TI IN+FL ++ P+K QLKAL L N IN ES+ I KAKRFL+F+IRDKK L+ +++ +RI +C KIC+ NM+ I II L +T Q + S S T+ N ++SV+ S + D E+ + +KR+L + D + + I+ ++ +P E+D DP IWFTD++ID +L+NHI + +F SI CFIVEIL N +D+FPIPE VFKAQ+ILCPLNI+ HWILFVYCK+SL SYF+DPI RH F NKT AL++TMALN+LF+LKAAMTFHPH++F YQ N+YDCGP+ICAYAM ISG WQSFP+ F++IIRKEVHQ +LF QQKD K+SGGGLPKFMEIIKRNGV+K SSA+QAFLLKQNSC+SSLL E+FK + NTTVLSPELT ++AQ I H + ++PND NW L++FSLV G SYIFNF +R +TERLI IGENMT+YLNKF IS++KV F +HNI+H SIT DD LFASAFI L+E LIF Q+S T SE L S KI+QANEIC NLN +N KI EEIT+KYF LKL+ NFMLLN TMC+AILDDCT++L ++LNYE +IKAQVIFAI+APPK+RE LLIIDY TDEYYI+NPTTL TE+ +C+ RNK+NEIKETPGRV+N+G P+DIRGSGLVSK+LICAFIK+Y NDLPL+NLNLREIG ISSLLP+I+E KK S TK KI K NLNLE RK+KI L+ V + VN+IID+I QFP+R+K+ HKPYLGNKTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPF GNWNNPL FCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGN+NRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATE GG Sbjct: 1720 PEFENDKLSNIKLDNLNTTKKFSSVNFNKTDLKNSKTLRKLKNNNSNIQRKNSPYFKSRNLEKTKFNYQCFSRTLNKSEKLQLFRSFPNLNKKIKTKESVEKFQNLNNELIRITPSKNPLKIDGFLKFFYRNGNICVSINFSVNNKMEPLVKKTILKTSIIDSNIITSYNNRLKFTGASTAIKRFLFVLSNKLSETATISNAK---------------QRALPDYLMKSHIKYHDGDFVMLDLLSDSDLNVGNATLSSSELSRSQMRDLFKSFPELAELFFSESDCNTDKFKNLINNLKSEHGFPEQISFVGGKFIKLNETKDSDHSQAEGESDIMFNIGLLNFHEMCLKDTTLRSLFSQPKSSEKIIDIIFHLNYLQLKGELKHTSNGSYGDYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSSEIDRLHNIISPETIKHINSFLSEIDKVYPQKATQLKALQNLSNNINAIKSESDDETIAKAKRFLFFVIRDKKKFLLGSKYSYRIPLHCRKICTTNMTTHIFSIIQSLLLTLTVSDSEQIADRSDSITLVNTTQSVEINPGTQSGSIVDISVVETG-STEHARVKRRLE-ETDADSTIKII------EINKP----------------------------LNESD-------------------RDPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLFCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQ----------------ISHSLEKIIVPNDSNWSLFVFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTESSQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIVRQFPDRVKSKHKPYLGNKTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFQGNWNNPLNFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNNNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATEKGG 3451 HSP 2 Score: 1855.49 bits (4805), Expect = 0.000e+0 Identity = 923/1115 (82.78%), Postives = 1007/1115 (90.31%), Query Frame = 2 Query: 2564 DPKIWFTDENIDKFLENHIRNSDFVSIKCFIVEILCANLEKDIFPIPENVFKAQVILCPLNINNAHWILFVYCKSSLMSYFVDPIFSNRHSFTNKTIALKITMALNELFDLKAAMTFHPHDDFKYQNNNYDCGPFICAYAMRISGEWQSFPESFVEIIRKEVHQFKLFPQQKDPKISGGGLPKFMEIIKRNGVKKISSASQAFLLKQNSCVSSLLIEWFKNKNNTTVLSPELTSKVIAQNNRYIRENVTFKQFSGIEHVISVIPNDMNWGLYLFSLVSGISYIFNFRNRTLTERLIGIGENMTDYLNKFFISDKKVTFNRDHNIDHISITLDDPHLFASAFIELVEMLIFENQISRTSISESLNSFKIQQANEICKNLNLLNFKITEEITSKYFKILKLDDNFMLLNATMCSAILDDCTQYLNEYLNYECVIKAQVIFAIVAPPKYREFLLIIDYNTDEYYILNPTTLSETENHLFICKSLRNKLNEIKETPGRVLNIGVFPHDIRGSGLVSKVLICAFIKHYVNDLPLVNLNLREIGNTISSLLPVINEYKKEQNSCKTKFNKINKGNLNLEMRXXXXXXXXXXVLNFNVNQIIDVINEQFPNRIKTTHKPYLGNKTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFHGNWNNPLKFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDXXXXXXXXXXXTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKXXXXXXXXXXXXKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNSNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATENGG 5908 DP IWFTD++ID +L+NHI + +F SI CFIVEIL N +D+FPIPE VFKAQ+ILCPLNI+ HWILFVYCK+SL SYF+DPI RH F NKT AL++TMALN+LF+LKAAMTFHPH++F YQ N+YDCGP+ICAYAM ISG WQSFP+ F++IIRKEVHQ +LF QQKD K+SGGGLPKFMEIIKRNGV+K SSA+QAFLLKQNSC+SSLL E+FK + NTTVLSPELT ++AQN +IRENVTF+QF+GI+H+IS++PND NW L++FSLV G SYIFNF +R +TERLI IGENMT+YLNKF IS++KV F +HNI+H SIT DD LFASAFI L+E LIF Q+S T SE L S KI+QANEIC NLN +N KI EEIT+KYF LKL+ NFMLLN TMC+AILDDCT++L ++LNYE +IKAQVIFAI+APPK+RE LLIIDY TDEYYI+NPTTL TE+ +C+ RNK+NEIKETPGRV+N+G P+DIRGSGLVSK+LICAFIK+Y NDLPL+NLNLREIG ISSLLP+I+E KK S TK KI K NLNLE RK+KI L+ V + VN+IID+I QFP+R+K+ HKPYLGNKTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFHGNWNNPL FCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGN+NRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATE GG Sbjct: 4664 DPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLFCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFVFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTESSQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIVRQFPDRVKSKHKPYLGNKTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFHGNWNNPLNFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNNNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATEKGG 5778 HSP 3 Score: 845.114 bits (2182), Expect = 0.000e+0 Identity = 439/639 (68.70%), Postives = 507/639 (79.34%), Query Frame = 2 Query: 461 PKFENHKLSNIKLDNLNTTEKFSSVNFNKTDLKNSKTLRKLINSNSNIQRKDLPYFKSRNLEKTKINYQCFSRTLNKSEKLQLFRAFPNLNKKINTKESVENFQNLNNELIRINPSKNPLKIDGFVKFFYRNGNICVSINFSVNNKTEQLVKETILKTSIIDSNIITSYNNRLKLTGASTAIKSFLFVLSTKLSETATISNAKVRGEQINNCLNLLKKQKALPDYLMKSHIKYHNGDFVMLDLLSNSDLNVKKAILSSSELSRSQMRDLFKSFPELAELFFSESDCNTDKFKNLINNLKSEHGFPEQISFVGGKFIKTHIDKISEHLQTESESDIMFNLGLLDFIQMSKTDTLFHSLLTQPNSPSKLIDIIFYINYLNLKGTLAYISNATFDEYVKNYLRNCFLMHSITNIESSHSLGRDNIETWGPEMINMIPSSSYYFANCKERLLKLRQLNLSREIDKIHNIISPNTISEINNFLETVEVALPKKVDQLKALSKLGNKINEFSIESNFPDIDKAKRFLYFIIRDKKNLLVNNRFYFRISRNCSKICSANMSACITEIIDYLSPYITSVKDNQTVNTSVSATVENVSESVDPLLEVPSSPVTDTETFESPLKVDSETLKRKLSVDIDDNQSTTIVTN 2377 P+FEN KLSNIKLDNLNTT+KFSSVNFNKTDLKNSKTLRKL N+NSNIQRK+ PYFKSRNLEKTK NYQCFSRTLNKSEKLQLFR+FPNLNKKI TKESVE FQNLNNELIRI PSKNPLKIDGF+KFFYRNGNICVSINFSVNNKTE LVK+TILKTSIIDSNIITSYNNRLK TGASTAIK FLFVLS KLSETATISNAKVRGEQINN LNLLKKQ+ALPDYLMKSHIKYH+GDFVMLDLLS+SDLNV A LSSSELSRSQMRDLFKSFPELAELFFSESDCNTDKFKNLINNLKSEHGFPEQISFVGGKFIK + K S+H Q E ESDIMFN+GLL+F +M DT SL +QP S K+IDIIF++NYL LKG L + SN ++ +YV NY+RNC ++SI++IE+ ++L D+IE W P ++ MIP SY+ ++CKERLL+LRQ LS EID++HNIISP TI IN+FL ++ P+K QLKAL L N IN ES+ I KAKRFL+F+IRDKK L+ +++ +RI +C KIC+ NM+ I II L +T Q + S S T+ N ++SV+ S + D E+ + +KR+L VDID+ +S TN Sbjct: 4025 PEFENDKLSNIKLDNLNTTKKFSSVNFNKTDLKNSKTLRKLKNNNSNIQRKNSPYFKSRNLEKTKFNYQCFSRTLNKSEKLQLFRSFPNLNKKIKTKESVEKFQNLNNELIRITPSKNPLKIDGFLKFFYRNGNICVSINFSVNNKTEPLVKKTILKTSIIDSNIITSYNNRLKFTGASTAIKRFLFVLSNKLSETATISNAKVRGEQINNTLNLLKKQRALPDYLMKSHIKYHDGDFVMLDLLSDSDLNVGNATLSSSELSRSQMRDLFKSFPELAELFFSESDCNTDKFKNLINNLKSEHGFPEQISFVGGKFIKLNETKDSDHSQAEGESDIMFNIGLLNFHEMCLKDTTLRSLFSQPKSSEKIIDIIFHLNYLQLKGELKHTSNGSYGDYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSSEIDRLHNIISPETIKHINSFLSEIDKVYPQKATQLKALQNLSNNINAIKSESDDETIAKAKRFLFFVIRDKKKFLLGSKYSYRIPLHCRKICTTNMTTHIFSIIQSLLLTLTVSDSEQIADRSDSITLVNTTQSVEINPGTQSGSIVDISVVETG-STEHARVKRRLEVDIDEVESIIHTTN 4662 HSP 4 Score: 801.971 bits (2070), Expect = 0.000e+0 Identity = 385/385 (100.00%), Postives = 385/385 (100.00%), Query Frame = 1 Query: 5908 ANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEKMYLFKN 7062 ANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEKMYLFKN Sbjct: 5779 ANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEKMYLFKN 6163 HSP 5 Score: 792.341 bits (2045), Expect = 0.000e+0 Identity = 380/381 (99.74%), Postives = 381/381 (100.00%), Query Frame = 1 Query: 5908 ANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEKMY 7050 ANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEK+Y Sbjct: 3452 ANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEKIY 3832 HSP 6 Score: 442.195 bits (1136), Expect = 0.000e+0 Identity = 216/364 (59.34%), Postives = 269/364 (73.90%), Query Frame = 1 Query: 5908 ANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSAR 6999 A C+DLLDEYH QTI +FFRLLTS C Y++ IN SL VT PRLGIK P+L +S +W NGKESK +HSGRKTRF R R ++ +F + HNI + F + PS+ ITT++ GT I+ LRKT SK+LH AL DSYLSKWE S SN + SA+KL P +NK IFRS+L++F W FIHRARTNTLS FAK H G+ RLCR C +EDET+ H +Q+CK++ +L RHN CL I ++ K+ L+VVVDH CSLVP S ERVDL+IT+ +K I LVDMKCP DSV+NF+ VD LNL KY LK IQAVKPD+KVEL TC+ GSLGS KT ++L+K+GV+ + L+KECA+SNIAHSA+ Sbjct: 1162 AGCIDLLDEYHAQTIVYFFRLLTSTCGYSKTINTFSLLSVTSPRLGIKNPTLSQSFEWINGKESKLNHSGRKTRFHRLRTSIEYFSRVHNIKLLFEIFKQNPSIRITTSLTGTRIILPKLRKTLSKILHSALQDSYLSKWEMSNHSNLLVSAIKLCPLVNKLIFRSDLTDFEWKFIHRARTNTLSTFAKPHKAGEDRLCRRCKSEDETILHVLQTCKINQSLATNRHNACLIKIKDSI-KDPELLVVVDHKCSLVPTSSERVDLIITNTEKKTILLVDMKCPIDSVSNFQLVDNLNLEKYAKLKLDIQAVKPDYKVELHTCIMGSLGSIESKTEDLLLKMGVQPNRIIGLMKECAISNIAHSAK 1524 HSP 7 Score: 338.576 bits (867), Expect = 0.000e+0 Identity = 173/261 (66.28%), Postives = 212/261 (81.23%), Query Frame = 2 Query: 5126 SLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKXXXXXXXXXXXXKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNSNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATENGG 5908 +LL+ + V +F +ILQLLY+DTS+FY C + TP+IPIK+GVKQGCPISMILFA+AINPVLEA+S S+ PFMIG S V++LAYADDIALIA + DLQ + ++AV TA IGFEYRPEKC Y+Q PKV SEI++NN IKKL S EFYQYLGVP+G+ DQSPY+I+ K + DT+K+A+S L GWQKLKAYKIF+HSRLIFPFRTREIKT +L+ + NS +VN +SQLRG RK+L LPN SE+SYFYN+TENGG Sbjct: 901 TLLKHMNVSAEFVNILQLLYTDTSSFYQCNQMQTPDIPIKKGVKQGCPISMILFAIAINPVLEAISLSNTTPFMIGTSSVQVLAYADDIALIATNSSDLQTLFDLAVNTANMIGFEYRPEKCAYIQYPKVETVSEIIVNNVLIKKLASNEFYQYLGVPIGDNNDQSPYEIVSKVIEDTKKIAHSNLYGWQKLKAYKIFLHSRLIFPFRTREIKTSSLADPSRNSRINVNNTSQLRGHLRKILNLPNHSEISYFYNSTENGG 1161 HSP 8 Score: 56.6102 bits (135), Expect = 0.000e+0 Identity = 41/73 (56.16%), Postives = 49/73 (67.12%), Query Frame = 3 Query: 192 NGNDFEYKLFILNEKSAEESIKYKDYXXXXXXXXXXXXXXXXXSEKSADTQGCDLEA*TYPQAVFWALDNGQS 410 NGND E K +N +ES YKD F N + IFI++NFSEKSAD QGCD EA T +AVFWA++NGQS Sbjct: 3936 NGNDLENKTPKMNGNRTKESFIYKD-FFNKNNLKNNIFIDKNFSEKSADMQGCDSEARTSSRAVFWAVNNGQS 4007 HSP 9 Score: 594.734 bits (1532), Expect = 1.448e-171 Identity = 361/931 (38.78%), Postives = 546/931 (58.65%), Query Frame = 2 Query: 1964 INEFSIESNFPDIDKAKRFLYFIIRDKKNLLVNNRFYFRISRNCSKICSANMSACITEIIDYLSPYITSVKDNQTV--NTSVSATVENVSESVDPLLEVPSSPVTDTETFESPLKV---------DSETLKRKLSVDIDDNQSTTIVTND---IQQDVPQPKIIKKTRRNTVKPK*RCXXXXXXXXXXXXKETDADXXXXXXXXXXXXXXXXXHDPKIWFTDENIDKFLENHIRNSDFVSIKCFIVEILCANLEKDIFPIPENVFKAQVILCPLNINNAHWILFVYCKSSLMSYFVDPIFSNRHSFTNKTIALKITMALNELFDLKAAMTFHPHDDFKYQNNNYDCGPFICAYAMRISGEWQSFPESFVEIIRKEVHQFKLFPQQKDPKISG---GGLPKFMEIIKRNGVKKISSA--------SQAFLLKQNSCVSSLLIEWFKNKNNTTVLSPELTSKVIAQNNRYIRENVTFKQFSGIEHVISVIPNDMNWGLYLFSLVSGISYIFNFRNRTLTERLIGIGENMTDYLNKFFISDKKVTFNRDHNIDHISITLDDPHLFASAFIELVEMLIFENQISRTSISESLNSFKIQQANEICKNLNLLNFKITEEITSKYFKILKLDDNFMLLNATMCSAILDDCTQYLNEYLNYECVIKAQVIFAIVAPPKYREFLLIIDYNTDEYYILNPTTLSETENHLFICKSLRNKLNEIKETPGRVLNIGVFPHDIRGSGLVSKVLICAFIKHYVNDLPLVNLNLREIGNTISSLLPVINEYKKEQNSCKTKFNKINKGNLNLEMRXXXXXXXXXXVLNFNVNQIIDVINEQFPN----RIKTTHKPYLG-NKTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFHGNWNNPLKFCKRSKQALNLELFSNFEIMFQLK 4666 IN+ I + D+ K+KRF+YF++RD K L+ N+ FR+ C+K C++ MS I+ II L P + +VKD + + + +EN+ + P++ + E + V ++ L V+ D N+S +N I +++ P + +RNTVK + K T + DP+IWF+D +ID +LE HI N IKCFIV ILC+N+++++ IP ++ A+++ CPLNINN+HWILFVYCK S SYF+DPI NR++ NK +ALKI +ALN F+LK A++++PH + +YQNNN+DCGPF CAYA+ IS + +FP+ F++ IR++VH+ ++ +I G GG M++ N K I+ + L Q CVSS++ ++++N +VLS ELT +IAQNN +I +NVTFKQF GI+H++ VIP +W L+++S+ S+IF+F RT+ +RLI IG +TDYLN+F + ++ V F +H+I H + D FAS FI L E L++E + + +SL+ K + EI LNL+N KIT++I +YF LKL D+++LLN T+C AI DDCTQY+ ++LN EC++KA VIFAI++PPK E LL+IDY+T+E+Y L+P T C ++ K+NE++E+ GR + G HDIRGSGL+SK+LICAFI++Y D L N+NL EIG ++SL+P+++ + + K N LNL+ RK KI L+ K+ + +V++II I P + K +PYLG N +P+K N +F+T+MK TV ++ N+ +V I P FQ+I+ NF W+N LKF K S + L L S+ EI+ L+ Sbjct: 4 INDEQIIDDTYDV-KSKRFIYFLLRDSKKYLIRNQ-TFRLFETCNKYCTSEMSQQISLIITKLKPIVINVKDVDLIEQDCDLDKPIENI-DITKPIVIEEIHCMKCNSILEKCILVREGMNVNICENCLLDAISVVEPDSNESNQTNSNHDSPITENIINPPTKRTGQRNTVKKQ-----------PSKPKSTICNKYLTIDN----------RDPEIWFSDNDIDWYLETHIDNPMHGYIKCFIVNILCSNIQEEVVAIPRSISNAEMVFCPLNINNSHWILFVYCKKSHSSYFIDPILKNRNNLINKQMALKINIALNRFFNLKIAVSYNPHKNLQYQNNNFDCGPFTCAYAVIISKDLDNFPDGFIDEIRRDVHRNQM-------EIVGNLIGGAKTKMDMSSFNFKKAIAKTKYSNNNPNTSNILKSQMPCVSSIICKYYENNCKVSVLSAELTLNLIAQNNSFIADNVTFKQFKGIDHILCVIPKFNDWCLFIYSIKLKHSHIFDFNYRTIDDRLIEIGVKITDYLNQFCL-NRNVKFLANHHISHSTFLSYDTQYFASHFIVLFEKLVYEIHLDCDKVYDSLSKIKTETCIEISPGLNLINGKITDKIIFEYFNKLKLSDDYILLNKTLCVAISDDCTQYMKDFLNIECMMKANVIFAIISPPKVHELLLVIDYSTEEHYYLSPVTTDLNVVSQHFCYNILIKINELRESKGRAMKTGHCRHDIRGSGLLSKILICAFIRNYALDYSLENINLHEIGKIVNSLVPIVDGSDNVKYEKREKLKAANTLKLNLKQRKEKINQLLIKLSDSDVDEIICTILTNIPRLENLQKKEFREPYLGKNHNKPKKFNNP---AEFLTNMKTTVYRILNDQSVKIEPPFQEIINNFTHPDVVPECWDNVLKFSKISDELLELTYISSEEILSNLQ 899 HSP 10 Score: 56.6102 bits (135), Expect = 3.598e-7 Identity = 41/73 (56.16%), Postives = 49/73 (67.12%), Query Frame = 3 Query: 192 NGNDFEYKLFILNEKSAEESIKYKDYXXXXXXXXXXXXXXXXXSEKSADTQGCDLEA*TYPQAVFWALDNGQS 410 NGND E K +N +ES YKD F N + IFI++NFSEKSAD QGCD EA T +AVFWA++NGQS Sbjct: 1631 NGNDLENKTPKMNGNRTKESFIYKD-FFNKNNLKNNIFIDKNFSEKSADMQGCDSEARTSSRAVFWAVNNGQS 1702
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000044750.1 (SMESG000044750.1) HSP 1 Score: 1354.35 bits (3504), Expect = 0.000e+0 Identity = 694/1119 (62.02%), Postives = 849/1119 (75.87%), Query Frame = 2 Query: 2564 DPKIWFTDENIDKFLENHIRNSDFVSIKCFIVEILCANLEKDIFPIPENVFKAQVILCPLNINNAHWILFVYCKSSLMSYFVDPIFSNRHSFTNKTIALKITMALNELFDLKAAMTFHPHDDFKYQNNNYDCGPFICAYAMRISGEWQSFPESFVEIIRKEVHQFKLFPQQKDPKISGGG---LPKFMEIIKRNGVKKISSASQAFLLKQNSCVSSLLIEWFKNKNNTTVLSPELTSKVIAQNNRYIRENVTFKQFSGIEHVISVIPNDMNWGLYLFSLVSGISYIFNFRNRTLTERLIGIGENMTDYLNKFFISDKKVTFNRDHNIDHISITLDDPHLFASAFIELVEMLIFENQISRTSISESLNSFKIQQANEICKNLNLLNFKITEEITSKYFKILKLDDNFMLLNATMCSAILDDCTQYLNEYLNYECVIKAQVIFAIVAPPKYREFLLIIDYNTDEYYILNPTTLSETENHLFICKSLRNKLNEIKETPGRVLNIGVFPHDIRGSGLVSKVLICAFIKHYVNDLPLVNLNLREIGNTISSLLPVINEYKKEQNSCKTKFNKINKGNLNLEMRXXXXXXXXXXVLNFNVNQIIDVINEQFPNRIKTTHKPYLGNKTRPQ-KINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFHGNWNNPLKFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDXXXXXXXXXXXTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKXXXXXXXXXXXXKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNSNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATENGG 5908 D KIWFTD++ID +LE+HI N +F +KCFIVEIL +N + +IFP+P+N+FKAQ+ILCPLNIN +HWILFVYCK + +SYFVDPI RH+ NK+ ALKITMALN LFDLKAA+TFHPHD+ YQ+NNYDCGP+ICAYAM IS EWQ+FP +F+E IRK VH+F+ Q PK+SGGG LP F K++ +A L +NSCV SL+ EWF NKN TVLSPELT +IA NN++IRENVTF+QF+ +++VI+VIPN+ +W LY+FS V SYI NF+ R L ERL+ IGE+MTDYLNKFFIS KV F +HN H S +DPH FASAFIE +E F N +S T I+E+L SFK+Q NEICKNLNL+NF I +EI +KYFK L L NF+ LN+ MC+AI+DDCT+YLN++LNY+ +IKAQVIFAIVAPPK+RE L IIDYNTDEYY+LNPTTL +N+L CK LRNK+NEI+E+P RVLN+G PHDIRGSGLVSK+L C+++ +Y NDLPLV LNLR+IGN +SS LP+ +E KK ++ N+ +K + NL+ RK KI L+ KV NV++I+DVI +Q + THKPYLGN R + +INK L++ F +DMK TV+ + N+ +V +RP ++ I+ NF K P W+ KFC RS + L L+ SN E++F+LK+ADNTSPG+DGI+YRD+++LDPEGKLLTFLFNKII K+IPDSWKSFKTLL PKP K KYD VSSWRPIALLSVIYK+FASCLA+RLT+WIN NNLLHIGQKGGSRHDGCVEHNSILS+ALEHSKYSKN LAIAWLDIKDAFGSVPH YMWSLLRF+G+ +F+ ++ C EPFMIGES VKILAYADDIAL++KS DLQ++TNIAV A+EIGFEYRPEKCGY++LP + +S+ILIN+ KIK+L S EFYQYLGVPVGEE DQSPYDIL K VSDTRK+A+S+LLGWQKLKAYKIF+HSRL+FPFRTREIKT AL+KSN N+N +VNI+SQLR CFRKM+ LPN SEV YFYN+TENGG Sbjct: 586 DSKIWFTDDDIDYYLESHIGNPNFAPVKCFIVEILSSNCKDEIFPMPDNLFKAQIILCPLNINESHWILFVYCKLTKISYFVDPILRKRHNLINKSSALKITMALNNLFDLKAAVTFHPHDNLVYQDNNYDCGPYICAYAMLISQEWQTFPNNFIETIRKNVHRFQTTKFQNPPKVSGGGITTLPIFKRFQNVTRPPKVALPYKASLQNENSCVPSLIKEWFSNKNYITVLSPELTLNLIAHNNQFIRENVTFRQFTRVKYVIAVIPNNPHWCLYIFSPVFERSYILNFQGRVLNERLVSIGESMTDYLNKFFISTAKVNFIVNHNQTHFSFRSEDPHFFASAFIEFLERFFFGNILSFTKINETLKSFKLQITNEICKNLNLINFSINDEIITKYFKNLNLPSNFIFLNSAMCTAIMDDCTRYLNDFLNYDNIIKAQVIFAIVAPPKFREILFIIDYNTDEYYLLNPTTLLGNDNYLSACKILRNKINEIRESPNRVLNLGECPHDIRGSGLVSKILFCSYMSNYANDLPLVGLNLRQIGNVVSSFLPIASEIKKVKSLENNIINENHKESENLKERKNKIDQLLIKVFKMNVDEIVDVILDQISIKTVPTHKPYLGNIERVESQINKSNLIKNFNSDMKTTVNTIINDVDVDVRPKYENIITNFEHKIPLDRTWDKVFKFCNRSDKKLKLKYLSNSEVLFELKKADNTSPGVDGIKYRDMVMLDPEGKLLTFLFNKIISKKVIPDSWKSFKTLLIPKPGKGDKYDSVSSWRPIALLSVIYKLFASCLANRLTFWINKNNLLHIGQKGGSRHDGCVEHNSILSSALEHSKYSKNSQLAIAWLDIKDAFGSVPHAYMWSLLRFVGLMRNFS-----------------------------IRSKC-----------------------EPFMIGESAVKILAYADDIALVSKSAYDLQRVTNIAVVIASEIGFEYRPEKCGYIELPLIETESQILINDIKIKRLASSEFYQYLGVPVGEETDQSPYDILKKVVSDTRKIADSDLLGWQKLKAYKIFLHSRLVFPFRTREIKTSALAKSNANNNLTVNITSQLRNCFRKMMSLPNHSEVCYFYNSTENGG 1652 HSP 2 Score: 564.688 bits (1454), Expect = 1.383e-163 Identity = 266/337 (78.93%), Postives = 299/337 (88.72%), Query Frame = 1 Query: 6037 RLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEKM 7047 RLGI P+LQE+ DW NGKE KP HSG+KTRFQRARIA+AFF+K H+I++ FIV +PSL+IT+ RGT ILT DLRKTTSKVLHMALCDSYLSKWEK C SNFIASA+KLSPKINKAI+R ++SEFAW+FIHRARTNTLSI AK HNKG+KRLCRLCH EDETMSH IQSCK+HLTLG+ERHNDCL LI+S+L+KNSNLIVVVDHVCSLVP SKERVDLMITD+ RKKIFLVDMKCPCD++NNF VDLLNL+KYDSLK QIQ KPDFKVELDTC+ GSLGSFP KT E+L+KIGV RT LK LLK+CALSNI+HSARRWH+HKTGILV+ EK Sbjct: 2052 RLGIINPTLQETFDWINGKEPKPWHSGKKTRFQRARIAIAFFKKEHDINIMFIVTKGQPSLFITSEKRGTFILTPDLRKTTSKVLHMALCDSYLSKWEKGCTSNFIASAIKLSPKINKAIYRGDISEFAWHFIHRARTNTLSINAKPHNKGNKRLCRLCHTEDETMSHIIQSCKIHLTLGSERHNDCLDLISSHLSKNSNLIVVVDHVCSLVPESKERVDLMITDMVRKKIFLVDMKCPCDTINNFALVDLLNLQKYDSLKMQIQDAKPDFKVELDTCIIGSLGSFPPKTPELLLKIGVDRTHLKGLLKDCALSNISHSARRWHYHKTGILVNLEKF 2388 HSP 3 Score: 559.681 bits (1441), Expect = 6.536e-162 Identity = 270/363 (74.38%), Postives = 305/363 (84.02%), Query Frame = 1 Query: 5908 ANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSA 6996 ANCVDLLDEYHTQTITHFFRL TS C++AR++N+DSL FV GPRLGI P+LQE+ DW NGKE K + + K H+I++ FIV +PSL+IT+ RGT ILT DLRKTTSKVLHMALCDSYLSKWEK C SNFIASA+KLSPKINKAI+R ++SEFAW+FIHRARTNTLSI AK HNKG+KRLCRLCH EDETMSH IQSCK+HLTLG+ERHNDCL LI+S+L+KNSNLIVVVDHVCSLVP SKERVDLMITD+ RKKIFLVDMKCPCD++NNF VDLLNL+KYDSLK QIQ KPDFKVELDTC+ GSLGSFP KT E+L+KIGV RT LK LLK+CALSNI+HSA Sbjct: 1653 ANCVDLLDEYHTQTITHFFRLFTSNCEFARKVNLDSLNFVAGPRLGIINPTLQETFDWINGKEPK--------------LGIL---KEHDINIMFIVTKGQPSLFITSEKRGTFILTPDLRKTTSKVLHMALCDSYLSKWEKGCTSNFIASAIKLSPKINKAIYRGDISEFAWHFIHRARTNTLSINAKPHNKGNKRLCRLCHTEDETMSHIIQSCKIHLTLGSERHNDCLDLISSHLSKNSNLIVVVDHVCSLVPESKERVDLMITDMVRKKIFLVDMKCPCDTINNFALVDLLNLQKYDSLKIQIQDAKPDFKVELDTCIIGSLGSFPPKTPELLLKIGVDRTHLKGLLKDCALSNISHSA 1998 HSP 4 Score: 305.834 bits (782), Expect = 6.728e-83 Identity = 193/384 (50.26%), Postives = 256/384 (66.67%), Query Frame = 2 Query: 1163 NGDFVMLDLLSNSDLNVKKAILSSSELSRSQMRDLFKSFPELAELFFSES---DCNTDKFKNLINNLKSEHGFPEQISFVGGKFIKTHIDKI--SEHLQTESESDIMFNLGLLDFIQMSKTDTLFHSLLTQPNSPSKLIDIIFYINYLNLKGTLAYISNATFDEYVKNYLRNCFLMHSITNIESSHSLGRDNIETWGPEMINMIPSSSYYFANCKERLLKLRQLNLSREIDKIHNIISPNTISEINNFLETVEVALPKKVDQLKALSKLGNKINEFSIESNFPDIDKAKRFLYFIIRDKKNLLVNNRFYFRISRNCSKICSANMSACITEII--DYLSPYITSVKDNQTVNTSVSATVENVSESVDPLLEVPSSPVTDTETFES 2293 +GDF+MLDLL++ ++ + +ELSRSQ+++LF SFPE+ ELFF E D N +K NLIN K E FP+QISFVGGKF+K IDK+ S+ Q ESESDIMFNLGL +S+ D + +SLL QP SP KL+DIIF++NYLNLKG +N T++ YV+NY+ NC LMHSI ++E+ L DNIE W P++I +IPSSS+Y ++CKE+LLKL+Q LS EID+IHNII P TI EINNFL ++ + K DQLK L+ LG KIN I+++ D+ KAKR LYFIIRDKK L + F + I NC KIC+ MS IT++I + L +V DN N VS +E+++ L+ P +P DT E+ Sbjct: 199 DGDFLMLDLLNSFEIEGELG-QKITELSRSQIKELFNSFPEIQELFFIEKKSIDENPEKLINLINKFKIEETFPQQISFVGGKFVK--IDKLNDSQFPQVESESDIMFNLGLFSLFGLSEYDNILNSLLCQPKSPEKLVDIIFHLNYLNLKGNFDTSTNGTYENYVQNYIVNCLLMHSILDLETCAFLNLDNIELWAPKLIELIPSSSHYSSSCKEKLLKLKQWKLSGEIDRIHNIICPETIIEINNFLGVIDQSYTTKSDQLKFLTCLGEKINNIEIDNDVDDLVKAKRMLYFIIRDKKRFLNKDNFNYHIPFNCRKICTLKMSDFITKLIQSNELFEEREAVVDN---NIDVSP-----NENLNILIVEPVNPTPDTVIVET 571
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000078596.1 (SMESG000078596.1) HSP 1 Score: 1135.55 bits (2936), Expect = 0.000e+0 Identity = 619/1119 (55.32%), Postives = 762/1119 (68.10%), Query Frame = 2 Query: 2561 HDPKIWFTDENIDKFLENHIRNSDFVSIKCFIVEILCANLEKDIFPIPENVFKAQVILCPLNINNAHWILFVYCKSSLMSYFVDPIFSNRHSFTNKTIALKITMALNELFDLKAAMTFHPHDDFKYQNNNYDCGPFICAYAMRISGEWQSFPESFVEIIRKEVHQFKLFPQQKDPKISGGG---LPKFMEIIKRNGVKKISSASQAFLLKQNSCVSSLLIEWFKNKNNTTVLSPELTSKVIAQNNRYIRENVTFKQFSGIEHVISVIPNDMNWGLYLFSLVSGISYIFNFRNRTLTERLIGIGENMTDYLNKFFISDKKVTFNRDHNIDHISITLDDPHLFASAFIELVEMLIFENQISRTSISESLNSFKIQQANEICKNLNLLNFKITEEITSKYFKILKLDDNFMLLNATMCSAILDDCTQYLNEYLNYECVIKAQVIFAIVAPPKYREFLLIIDYNTDEYYILNPTTLSETENHLFICKSLRNKLNEIKETPGRVLNIGVFPHDIRGSGLVSKVLICAFIKHYVNDLPLVNLNLREIGNTISSLLPVINEYKKEQNSCKTKFNKINKGNLNLEMRXXXXXXXXXXVLNFNVNQIIDVINEQFPNRIKTTHKPYLGNKTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFHGNWNNPLKFCKRSKQALNLE-LFSNFEIMFQLKRADNTSPGIDGIQYRDXXXXXXXXXXXTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKXXXXXXXXXXXXKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNSNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATENG 5905 DPKIWFTD++ID +LE+HI N +F +KCFIVEIL +N + +IFP+P+N+FKAQ+ILCPLNIN +HWILFVYCK + +SYFVDPIF H+ NK+ ALKITMALN LFDLKAA+TFHPHD+ YQ+NNYDCGP ICAYAM IS EWQ+FP +F+E IRK VH+F+ Q PK+SGGG LP F K++ +A L +NSCV SL+ E F NKN TVLSPELT IA NN++IRENVTF+QF+ +++VI+VIPN+ +W L ++L ERL+ IGE+MTDY NKFFIS KV F +HN H S +DPH FASAFIE +E F N +S T I+E+L SFK+Q NEICKNLNL+NF I +EI +KYFK L L NF+ LN+ MC+AI+DDCT+YLN++LNY+ +IKAQVIFAIVAPPK+RE L IIDYNTDE Y+LNPTTL +N+L CK LRNK+NEI+E+P RVLN+G P+DIRGSGLVSK+L C+++ +Y ND LP++ ++ +S + F I V++I +V + + N I HK K R KI++ +L++ F ++ VD +F+ ++ PT + P+ N +R + +N L NF +K NT + N + V+ +IPDSWKSFKTLL KP+K KYD VSSWRPIALLSVIYK+F SCLA+RLT+ IN NNLLHIGQKG SRHDGCVEHNSILS+ALEHSKY KN LAIAWLDIKDAFGSVPH YMWSLLRF+GV E+F +I++ + SD STFYSCGPILTPNI I+QGVKQGCPISMILFALAINPVLEA+SRS CEPFMIGES VKILAYADDIAL++KS DLQ++TNIAV A+EIGFEYR EKCGY++L LLSK+ K VSDTRK+A+S+LLGWQKLK YKIF+HSRL+FPFRTREIKT AL+KSN N+N +VNI+SQLR CFRKM+ LPN SEV YFYN+TENG Sbjct: 92 RDPKIWFTDDDIDYYLESHIGNPNFAPVKCFIVEILSSNCKDEIFPMPDNLFKAQIILCPLNINESHWILFVYCKLTKISYFVDPIFRKWHNLINKSSALKITMALNNLFDLKAAVTFHPHDNLVYQDNNYDCGPHICAYAMLISQEWQTFPNNFIETIRKNVHRFQTSKFQNPPKVSGGGITTLPIFKRFQNVTRPPKVALPYKASLQNENSCVPSLIKEGFSNKNYITVLSPELTLNFIAHNNQFIRENVTFRQFTRVKYVIAVIPNNPHWCL-----------------QSLNERLVSIGESMTDYPNKFFISTAKVNFIVNHNQIHFSFRSEDPHFFASAFIEFLEKFFFGNILSFTKINETLKSFKLQITNEICKNLNLINFSINDEIITKYFKNLNLPSNFIFLNSAMCTAIMDDCTRYLNDFLNYDNIIKAQVIFAIVAPPKFREILFIIDYNTDECYLLNPTTLLGNDNYLSTCKILRNKINEIRESPNRVLNLGECPYDIRGSGLVSKILFCSYMSNYAND------------------LPLVGLNLRQIDSVVSSFLPI-------------------------VSEIKNVKSLE-NNIINENHKESENLKERKNKIDQ-LLIKVFKMNVDEIVDVIFDQISIKTVPTHK----------PYLDNK-------ERVESQINKSNLIKNFNS--DMKTTVNT------------------------IINDVDVD-VIPDSWKSFKTLLIQKPSKGDKYDSVSSWRPIALLSVIYKLFTSCLANRLTFCINKNNLLHIGQKGDSRHDGCVEHNSILSSALEHSKYGKNSQLAIAWLDIKDAFGSVPHAYMWSLLRFVGVDEEFVTIIERMDSDKSTFYSCGPILTPNIAIRQGVKQGCPISMILFALAINPVLEAISRSKCEPFMIGESTVKILAYADDIALVSKSAYDLQRVTNIAVAIASEIGFEYRSEKCGYIEL------------------LLSKQ---------------------KKVVSDTRKIADSDLLGWQKLKTYKIFLHSRLVFPFRTREIKTSALAKSNANNNLTVNITSQLRNCFRKMMSLPNHSEVCYFYNSTENG 1065 HSP 2 Score: 261.922 bits (668), Expect = 2.031e-70 Identity = 122/164 (74.39%), Postives = 139/164 (84.76%), Query Frame = 1 Query: 5908 ANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIF 6399 ANCVDLLDEYHTQTITHFFRL TS C++AR++N+DSL FV GPRLGI P+LQE+ DW N KE KP HS +KTRFQRARIA+AFF+K H+I + FIV +PSL+IT+ RGT ILT DLRKTTSKVLHMALCDSYLSKWEK SNFIASA+KLSPKINKAI+ Sbjct: 1067 ANCVDLLDEYHTQTITHFFRLFTSSCEFARKVNLDSLNFVAGPRLGIINPTLQETFDWINVKELKPRHSCKKTRFQRARIAIAFFKKEHDIYIMFIVTKGQPSLFITSEKRGTFILTPDLRKTTSKVLHMALCDSYLSKWEKGRTSNFIASAIKLSPKINKAIY 1230
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000079542.1 (SMESG000079542.1) HSP 1 Score: 765.763 bits (1976), Expect = 0.000e+0 Identity = 417/784 (53.19%), Postives = 539/784 (68.75%), Query Frame = 2 Query: 3557 DDPHLFASAFIELVEMLIFENQISRTSISESLNSFKIQQANEICKNLNLLNFKITEEITSKYFKILKLDDNFMLLNATMCSAILDDCTQYLNEYLNYECVIKAQVIFAIVAPPKYREFLLIIDYNTDEYYILNPTTLSETENHLFICKSLRNKLNEIKETPGRVLNIGVFPHDIRGSGLVSKVLICAFIKHYVNDLPLVNLNLREIGNTISSLLPVINEYKKEQNSCKTKFNKINKGNLNLEMRXXXXXXXXXXVLNFNVNQIIDVINEQFPNRIKTTHKPYLGNKTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFHGNWNNPLKFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDXXXXXXXXXXXTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKXXXXXXXXXXXXKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNSNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATENGG 5908 DDP AS FI +E I N ++R + E L + + + +E+ NLNL N KITE++ + +F L L +NF+ LN TM +AIL+DCTQYLNE+LN E ++KA+++FAI+APPK R+ L+IIDY +DEYY+LNP++L +L SL K+NEIKETP +G PHDIRGSGLVS++LICAFIKHY DL L N+NLR+IGN I SLLP + + K+ S K + L L+ R + I + + N NVN++ R K + P+ K + F +MK TV K+ N ++ RPT + + NF + P +++N L F +S+ L L + E++F+LKRADNTSPGIDGI+Y D+ + D EGKLLT L+NKII +PD WKSFKTL+TPKP+K KY+ +SSWRPIALLSV+YK+FAS L+ RLT W+N NNLLHIGQKGGS HDGCVEHNS+LS+ LEHSKYSK+ P+ IA+LDIKDAFGSVPHDYMW +LR IGVGE FT+ L+LLY++TS++Y+CGPI+TPNIPIKQGVKQGCP+SMILFA+AINPVL+AV+ S +PF +GES +++LAYADDIALIA + DLQ I NIA A EIGFEYRP+KC Y+QLP V + E +QSPY+IL+K VSD +KLA+S+L GWQKLKAYK F+HSRL FPFRTR+ K ALS + N+ +++LR RKM+ LPN SE+SYFYN+ ENGG Sbjct: 4 DDPIHHASTFILFLEEFISGNVVNRDKVIEKLVNMQSKMCDEVVVNLNLKNCKITEKLLTNFFINLNLSENFIFLNNTMTTAILNDCTQYLNEFLNIENLMKAKIVFAIIAPPKARQILMIIDYTSDEYYLLNPSSLLPNFPYLCTANSLLTKINEIKETPELCKLLGNCPHDIRGSGLVSRILICAFIKHYALDLSLENINLRDIGNVIKSLLPTVQDIIKD--SIKNLSDNKTNVKLKLDQRILLINENLLTLQNANVNEM----------RNKISKVPHPKTKFKSS----------FNQNMKTTVYKILVNDEINERPTIKDHIGNFSHQDPLIKSYDNVLNFGLKSQNTLLLRPIIDKEVIFELKRADNTSPGIDGIKYNDIAIHDAEGKLLTLLYNKIITENTMPDVWKSFKTLMTPKPDKGDKYNLISSWRPIALLSVVYKIFASILSRRLTSWVNRNNLLHIGQKGGSVHDGCVEHNSVLSSCLEHSKYSKDTPIIIAFLDIKDAFGSVPHDYMWKILRHIGVGEKFTNTLKLLYTETSSYYTCGPIVTPNIPIKQGVKQGCPLSMILFAIAINPVLQAVTLSKVKPFKVGESSIQVLAYADDIALIANNTHDLQNILNIAFDVAREIGFEYRPKKCAYIQLPNVET--------------------------ISEHTNQSPYEILNKVVSDAKKLADSDLCGWQKLKAYKTFLHSRLTFPFRTRDFKISALSANVCNN------TTKLRSHLRKMMSLPNNSEISYFYNSVENGG 733 HSP 2 Score: 343.584 bits (880), Expect = 0.000e+0 Identity = 183/374 (48.93%), Postives = 234/374 (62.57%), Query Frame = 1 Query: 5908 ANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGIL 7029 A+C DLLDEYHTQTI++FFRL T+ C++ ++INIDSLKFVTGPRLG PSLQ+S +W N + HSG+K RF R R A+ FFEKTHNI++SF V D KP L +TTA++GTIILT R+ SKVLH+AL DSY +KW+ S N + RLCR CH +D+T+ H +Q+CKVHLTL RHNDCL+ I +L K+ +LIVVVDH CSLV NSKERVDL+IT+ +K I +VD+KCP DS+ FE V+ NL KYDSLK QIQA KP F V++ TC+ GS+GS+ ++L K+GV ++ ALS WH+H TG+L Sbjct: 734 ASCTDLLDEYHTQTISYFFRLFTANCEFTKRINIDSLKFVTGPRLGNNNPSLQDSFNWINKADIIQKHSGKKPRFFRPRTAIQFFEKTHNITISFEVLDDKPILRLTTALKGTIILTEFDRRLVSKVLHLALYDSYFTKWKNS------------------------------------------------NIIENRLCRRCHNQDKTLPHVLQNCKVHLTLALNRHNDCLQQIVHHL-KSPSLIVVVDHTCSLVSNSKERVDLIITNNEKKTILMVDIKCPFDSLVTFETVNKENLAKYDSLKKQIQAAKPSFTVDIFTCIIGSMGSY-----DLLGKMGVP-------FEKVALS--------WHYHVTGVL 1038 The following BLAST results are available for this feature:
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30027800 ID=SMED30027800|Name=Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2|organism=Schmidtea mediterranea sexual|type=transcript|length=7747bpback to top protein sequence of SMED30027800-orf-1 >SMED30027800-orf-1 ID=SMED30027800-orf-1|Name=SMED30027800-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=437bp MKSHIKYHNGDFVMLDLLSNSDLNVKKAILSSSELSRSQMRDLFKSFPELback to top protein sequence of SMED30027800-orf-2 >SMED30027800-orf-2 ID=SMED30027800-orf-2|Name=SMED30027800-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1060bp MSYFVDPIFSNRHSFTNKTIALKITMALNELFDLKAAMTFHPHDDFKYQNback to top protein sequence of SMED30027800-orf-3 >SMED30027800-orf-3 ID=SMED30027800-orf-3|Name=SMED30027800-orf-3|organism=Schmidtea mediterranea sexual|type=polypeptide|length=277bp MRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKIback to top Annotated Terms
The following terms have been associated with this transcript:
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