SMED30027788
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30027788 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 12
Alignments
SMED30027788 aligns in the following genomic locations:
Homology
BLAST of SMED30027788 vs. Ensembl Celegans
Match: pap-1 (Poly-A Polymerase [Source:UniProtKB/TrEMBL;Acc:Q9U2P3]) HSP 1 Score: 53.9138 bits (128), Expect = 2.962e-7 Identity = 75/300 (25.00%), Postives = 123/300 (41.00%), Query Frame = 1 Query: 214 RKIFEWMKGFLKDIELNSE--NMYFYLFPVGS--ITYHKSYPDNPKDFVLCLPGIIKLNKVYESLVPFLNKNGNFQVVANLSSRSIPVLELTISNNSFDFLLCFLPSQYCMSKKPIFDLRNPSENLLEQMDFKSILALNSLRNSLLIRDYLGDLFSIYQE---TLFHLKKWAIFKLIYFKSTSNFLNGTSLAIMLASIFHKCQ----QKSSNVIGYLYAFFRHYAELNWSTQTI--NIGNEK-FIDNVREIVKRNSYFLTHKNAIVTILTPAMPQQNCARNINKLSLDRIVHYFREAYFI 1071 R + EW+K N E N LF GS + H S D D + +P I + + S LN + N + + +PV++L S D L L + + + D +NLL +D +S+ +LN R + + L L +E TL +K WA IY S F G + AI++A CQ S ++ ++ F + W + + N++ I + E+V T + ++ I+TPA P+QN N+ + + I + EA I Sbjct: 62 RLVKEWVKNVTAMKIPNGEGVNAGGKLFTFGSYRLGVHSSGAD--IDTLAVVPRHIDRSDFFTSFKEMLNNDPNVTELHGVEEAFVPVMKLKYSGVELDILFARLALKEVPDTQELSD-----DNLLRNLDQESVRSLNGCR----VAEQLLKLVPRQKEFCVTLRAIKLWAKNHGIYSNSMG-FFGGITWAILVA---RACQLYPNASPSRLVHRMFFIFSTWT---WPHPVVLNEMNNDRNDIPTLCELVWDPRRKNTDRFHVMPIITPAFPEQNSTHNVTRSTATVIKNEICEALEI 343
BLAST of SMED30027788 vs. Ensembl Celegans
Match: pap-1 (Poly-A Polymerase [Source:UniProtKB/TrEMBL;Acc:Q9U2P3]) HSP 1 Score: 53.9138 bits (128), Expect = 2.962e-7 Identity = 75/300 (25.00%), Postives = 123/300 (41.00%), Query Frame = 1 Query: 214 RKIFEWMKGFLKDIELNSE--NMYFYLFPVGS--ITYHKSYPDNPKDFVLCLPGIIKLNKVYESLVPFLNKNGNFQVVANLSSRSIPVLELTISNNSFDFLLCFLPSQYCMSKKPIFDLRNPSENLLEQMDFKSILALNSLRNSLLIRDYLGDLFSIYQE---TLFHLKKWAIFKLIYFKSTSNFLNGTSLAIMLASIFHKCQ----QKSSNVIGYLYAFFRHYAELNWSTQTI--NIGNEK-FIDNVREIVKRNSYFLTHKNAIVTILTPAMPQQNCARNINKLSLDRIVHYFREAYFI 1071 R + EW+K N E N LF GS + H S D D + +P I + + S LN + N + + +PV++L S D L L + + + D +NLL +D +S+ +LN R + + L L +E TL +K WA IY S F G + AI++A CQ S ++ ++ F + W + + N++ I + E+V T + ++ I+TPA P+QN N+ + + I + EA I Sbjct: 62 RLVKEWVKNVTAMKIPNGEGVNAGGKLFTFGSYRLGVHSSGAD--IDTLAVVPRHIDRSDFFTSFKEMLNNDPNVTELHGVEEAFVPVMKLKYSGVELDILFARLALKEVPDTQELSD-----DNLLRNLDQESVRSLNGCR----VAEQLLKLVPRQKEFCVTLRAIKLWAKNHGIYSNSMG-FFGGITWAILVA---RACQLYPNASPSRLVHRMFFIFSTWT---WPHPVVLNEMNNDRNDIPTLCELVWDPRRKNTDRFHVMPIITPAFPEQNSTHNVTRSTATVIKNEICEALEI 343
BLAST of SMED30027788 vs. Ensembl Celegans
Match: T15H9.6 (pep chromosome:WBcel235:II:9607533:9609396:-1 gene:WBGene00011791.1 transcript:T15H9.6.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:T15H9.6) HSP 1 Score: 50.447 bits (119), Expect = 3.451e-6 Identity = 72/285 (25.26%), Postives = 117/285 (41.05%), Query Frame = 1 Query: 271 NMYFYLFPVGS--ITYHKSYPDNPKDFVLCLPGIIKLNKVYESLVPFLNKNGNFQVVANLSSRSIPVLELTISNNSFDFLLCFLPSQYCMSKKPIFDLRNPSENLLEQMDFKSILALNSLRNSLLIRDYLGDLFSIYQE---TLFHLKKWAIFKLIYFKSTSNFLNGTSLAIMLASIFHKCQ----QKSSNVIGYLYAFFRHYAELNWSTQT----INIGNEKFIDNVREIV---KRNSYFLTHKNAIVTILTPAMPQQNCARNINKLSLDRIVHYFREAYFILE 1077 N L P GS + H S D D ++ P I + + S L KN + + +P++ L S D L L + I D ++LL+ +D +S+ +LN R + + L L + TL +K WA IY S F G + AI++A I CQ S +I ++ F + NW IN + + + ++V +RN H ++ I+TPA PQQN N+++ S+ I ++A I + Sbjct: 85 NAGGKLIPFGSYRLGVHSSGAD--IDSIVVAPRHITRSDFFNSFKDILAKNPEVTELCAVEKAFVPIMTLKYSGVDIDILFARLALKSVPEDLNILD-----DSLLKNLDEESVRSLNGCR----VAEQLLKLVPHQKNFCITLRAIKLWAKNHGIYSNSMG-FFGGITWAILVARI---CQLYPNAAPSRLIQKVFFIFSTW---NWPAPVLLDYINC-DRTDLAQLNQLVWDPRRNHADRYH---LMPIITPAFPQQNSTHNVSRSSMKVIQDEMKKALIICD 347
BLAST of SMED30027788 vs. UniProt/SwissProt
Match: sp|Q51D88|PAP_ENTHI (Poly(A) polymerase OS=Entamoeba histolytica OX=5759 GN=16.t00038 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.493e-11 Identity = 86/338 (25.44%), Postives = 142/338 (42.01%), Query Frame = 1 Query: 157 QEEYFPLN---ENGTAALSYTVRKIFEWMK-------GFLKDIELNSENMYFYLFPVGSITYHKSYPDNPKDFVLCL--PGIIKLNKVYESLVPFLNKNGNFQVVANLSSRSIPVLELTISNNSFDFLLCFLPSQYCMSKKPIFDLRNPSENLLEQMDFKSILALNSLRNSLLIRDYLG----DLFSIYQETL-FHLKKWAIFKLIYFKSTSNFLNGTSLAIMLASIFHKCQQKSSNVIGYLYAFFRHYAELNWSTQTINIG-NEKFIDNVREIVKRNSYFLTHKNAIVTILTPAMPQQNCARNINKLSLDRIVHYFREAYFILEN------NDWKFL 1098 + + +P+ E A+S I +W K G D ++ + +Y Y GS Y + N D C+ I + Y+ L L N + + + + S+ P L + N FD L F + Y S D+ N EN+L+ MD A+N +RN+ +I ++ + F + T+ KK I+ +Y FLNG S+ I++A + + Q + + L FF+ Y+ +W + +G N+ F D +E ++ ILTPA P +N A +I K SL+ I + I+ NDW L Sbjct: 11 KNDMYPMGDQVEKKRKAISKMTEYIQQWGKKIYIESAGVADDTDVKAATIYVY----GS--YRLNVYGNNSDIDACIVSNSTITRDDFYDGLYAELLNNPDVKELKQIPSKRSPHLSMIYLNIEFD--LNFSRTAYT-SLPDNLDILN--ENILKNMDELDTRAINGVRNTDIIDAFVPNHSEEAFRVMVRTIKLWTKKRGIYGYVYC-----FLNGISIEILVAQVISENYQLDN--VRLLEKFFQVYSSWDWLRTPVMLGTNDDFNDKKKE-------------GVIQILTPASPSENAAFSITKFSLEMIKRELKRGQEIVHEFSSEGVNDWAKL 317
BLAST of SMED30027788 vs. TrEMBL
Match: A0A1W0WT02 (Poly(A) polymerase gamma OS=Hypsibius dujardini OX=232323 GN=BV898_07700 PE=4 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 5.139e-10 Identity = 70/260 (26.92%), Postives = 117/260 (45.00%), Query Frame = 1 Query: 298 GSITYHKSYPDNPKDFVLCLPGIIKLNKVYESLVPFLNKNGNFQVVANLSSRS---IPVLELTISNNSFDFLLCFLPSQ-YCMSKKPIFDLRNPSENLLEQMDFKSILALNSLRNSLLIRDYLGDLFSIYQETLFHLKKWAIFKLIYFKSTSNFLNGTSLAIMLASIFHKCQQKSS-NVIGYLYAFFRHYAELNWSTQTINIGNEKFIDNVREIVKRNSYFLTHKNAIVTILTPAMPQQNCARNINKLSLDRIVHYFREA 1062 GS PD+ D VL P ++ + + V L+ +F+++ N+ +PV++LT D L Q Y S++ D + LL MD KS +LN R I Y+ ++ I++ TL +K+WA +LIY S +L G S AI++A H C + S V G ++ FF +A +W + + +++ ++ I+TP P QN + NI + + + +V FRE Sbjct: 186 GSYGLGVCGPDSDLDVVLVAPCYVRREDFFSTFV--LHLRSHFEMITNVEPVEGAFVPVVKLTCDGVDVDLTFARLDKQLYVPSEEDGEDSLLVDDALL-GMDDKSTRSLNGWRVCRFIVKYVPNV-QIFRLTLMVVKEWAKARLIYSNSYC-YLGGVSWAILVA---HACHNRPSKTVFGQVHNFFTAFAAWDWKEPVCIAPLQLPSCQCFPSAPKFDPVALYEHHLMPIMTPCYPYQNSSFNITRTTFNCVVTAFREG 437
BLAST of SMED30027788 vs. TrEMBL
Match: K2HQM4 (Poly(A) polymerase, putative OS=Entamoeba nuttalli (strain P19) OX=1076696 GN=ENU1_172570 PE=4 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 3.258e-9 Identity = 87/338 (25.74%), Postives = 142/338 (42.01%), Query Frame = 1 Query: 157 QEEYFPLN---ENGTAALSYTVRKIFEWMK-------GFLKDIELNSENMYFYLFPVGSITYHKSYPDNPKDFVLCL--PGIIKLNKVYESLVPFLNKNGNFQVVANLSSRSIPVLELTISNNSFDFLLCFLPSQYCMSKKPIFDLRNPSENLLEQMDFKSILALNSLRNSLLIRDYLG----DLFSIYQETL-FHLKKWAIFKLIYFKSTSNFLNGTSLAIMLASIFHKCQQKSSNVIGYLYAFFRHYAELNWSTQTINIG-NEKFIDNVREIVKRNSYFLTHKNAIVTILTPAMPQQNCARNINKLSLDRIVHYFREAYFILEN------NDWKFL 1098 + + +P+ E A+S I +W K G D ++ + +Y Y GS Y + N D C+ I + Y+ L L N + + + + S+ P L + N FD L F + Y S D+ N EN+L+ MD A+N +RN+ +I ++ + F + T+ KK I+ +Y FLNG S+ I++A + + Q + + L FF+ Y+ +W + +G N+ F D +E I+ ILTPA P +N A +I K SL+ I + I+ NDW L Sbjct: 11 KNDMYPMGDQVEKKRKAISKMTEYIQQWGKKIYIESAGVADDTDVKAATIYVY----GS--YRLNVYGNNSDIDACIVSNSTITRDDFYDGLYAELLNNPDVKELKQIPSKRSPHLSMIYLNIEFD--LNFSRTAYT-SLPDNLDILN--ENILKNMDELDTRAINGVRNTDIIDAFVPNHSEEAFRVMVRTIKLWTKKRGIYGYVYC-----FLNGISIEILVAQVISENYQLDN--VRLLEKFFQVYSSWDWLRTPVMLGTNDDFNDKKKE-------------GIIQILTPASPSENAAFSITKFSLEMIKRELKRGQEIVHEFSSEGVNDWAKL 317
BLAST of SMED30027788 vs. TrEMBL
Match: M7WDW2 (Poly(A) polymerase OS=Entamoeba histolytica HM-3:IMSS OX=885315 GN=KM1_264350 PE=4 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 4.425e-9 Identity = 86/338 (25.44%), Postives = 142/338 (42.01%), Query Frame = 1 Query: 157 QEEYFPLN---ENGTAALSYTVRKIFEWMK-------GFLKDIELNSENMYFYLFPVGSITYHKSYPDNPKDFVLCL--PGIIKLNKVYESLVPFLNKNGNFQVVANLSSRSIPVLELTISNNSFDFLLCFLPSQYCMSKKPIFDLRNPSENLLEQMDFKSILALNSLRNSLLIRDYLG----DLFSIYQETL-FHLKKWAIFKLIYFKSTSNFLNGTSLAIMLASIFHKCQQKSSNVIGYLYAFFRHYAELNWSTQTINIG-NEKFIDNVREIVKRNSYFLTHKNAIVTILTPAMPQQNCARNINKLSLDRIVHYFREAYFILEN------NDWKFL 1098 + + +P+ E A+S I +W K G D ++ + +Y Y GS Y + N D C+ I + Y+ L L N + + + + S+ P L + N FD L F + Y S D+ N EN+L+ MD A+N +RN+ +I ++ + F + T+ KK I+ +Y FLNG S+ I++A + + Q + + L FF+ Y+ +W + +G N+ F D +E ++ ILTPA P +N A +I K SL+ I + I+ NDW L Sbjct: 11 KNDMYPMGDQVEKKRKAISKMTEYIQQWGKKIYIESAGVADDTDVKAATIYVY----GS--YRLNVYGNNSDIDACIVSNSTITRDDFYDGLYAELLNNPDVKELKQIPSKRSPHLSMIYLNIEFD--LNFSRTAYT-SLPDNLDILN--ENILKNMDELDTRAINGVRNTDIIDAFVPNHSEEAFRVMVRTIKLWTKKRGIYGYVYC-----FLNGISIEILVAQVISENYQLDN--VRLLEKFFQVYSSWDWLRTPVMLGTNDDFNDKKKE-------------GVIQILTPASPSENAAFSITKFSLEMIKRELKRGQEIVHEFSSEGVNDWAKL 317
BLAST of SMED30027788 vs. TrEMBL
Match: M2SDB9 (Poly(A) polymerase, putative OS=Entamoeba histolytica KU27 OX=885311 GN=EHI5A_207940 PE=4 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 4.425e-9 Identity = 86/338 (25.44%), Postives = 142/338 (42.01%), Query Frame = 1 Query: 157 QEEYFPLN---ENGTAALSYTVRKIFEWMK-------GFLKDIELNSENMYFYLFPVGSITYHKSYPDNPKDFVLCL--PGIIKLNKVYESLVPFLNKNGNFQVVANLSSRSIPVLELTISNNSFDFLLCFLPSQYCMSKKPIFDLRNPSENLLEQMDFKSILALNSLRNSLLIRDYLG----DLFSIYQETL-FHLKKWAIFKLIYFKSTSNFLNGTSLAIMLASIFHKCQQKSSNVIGYLYAFFRHYAELNWSTQTINIG-NEKFIDNVREIVKRNSYFLTHKNAIVTILTPAMPQQNCARNINKLSLDRIVHYFREAYFILEN------NDWKFL 1098 + + +P+ E A+S I +W K G D ++ + +Y Y GS Y + N D C+ I + Y+ L L N + + + + S+ P L + N FD L F + Y S D+ N EN+L+ MD A+N +RN+ +I ++ + F + T+ KK I+ +Y FLNG S+ I++A + + Q + + L FF+ Y+ +W + +G N+ F D +E ++ ILTPA P +N A +I K SL+ I + I+ NDW L Sbjct: 11 KNDMYPMGDQVEKKRKAISKMTEYIQQWGKKIYIESAGVADDTDVKAATIYVY----GS--YRLNVYGNNSDIDACIVSNSTITRDDFYDGLYAELLNNPDVKELKQIPSKRSPHLSMIYLNIEFD--LNFSRTAYT-SLPDNLDILN--ENILKNMDELDTRAINGVRNTDIIDAFVPNHSEEAFRVMVRTIKLWTKKRGIYGYVYC-----FLNGISIEILVAQVISENYQLDN--VRLLEKFFQVYSSWDWLRTPVMLGTNDDFNDKKKE-------------GVIQILTPASPSENAAFSITKFSLEMIKRELKRGQEIVHEFSSEGVNDWAKL 317
BLAST of SMED30027788 vs. TrEMBL
Match: A0A175JE12 (Poly polymerase putative OS=Entamoeba histolytica OX=5759 GN=CL6EHI_012040 PE=4 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 4.425e-9 Identity = 86/338 (25.44%), Postives = 142/338 (42.01%), Query Frame = 1 Query: 157 QEEYFPLN---ENGTAALSYTVRKIFEWMK-------GFLKDIELNSENMYFYLFPVGSITYHKSYPDNPKDFVLCL--PGIIKLNKVYESLVPFLNKNGNFQVVANLSSRSIPVLELTISNNSFDFLLCFLPSQYCMSKKPIFDLRNPSENLLEQMDFKSILALNSLRNSLLIRDYLG----DLFSIYQETL-FHLKKWAIFKLIYFKSTSNFLNGTSLAIMLASIFHKCQQKSSNVIGYLYAFFRHYAELNWSTQTINIG-NEKFIDNVREIVKRNSYFLTHKNAIVTILTPAMPQQNCARNINKLSLDRIVHYFREAYFILEN------NDWKFL 1098 + + +P+ E A+S I +W K G D ++ + +Y Y GS Y + N D C+ I + Y+ L L N + + + + S+ P L + N FD L F + Y S D+ N EN+L+ MD A+N +RN+ +I ++ + F + T+ KK I+ +Y FLNG S+ I++A + + Q + + L FF+ Y+ +W + +G N+ F D +E ++ ILTPA P +N A +I K SL+ I + I+ NDW L Sbjct: 11 KNDMYPMGDQVEKKRKAISKMTEYIQQWGKKIYIESAGVADDTDVKAATIYVY----GS--YRLNVYGNNSDIDACIVSNSTITRDDFYDGLYAELLNNPDVKELKQIPSKRSPHLSMIYLNIEFD--LNFSRTAYT-SLPDNLDILN--ENILKNMDELDTRAINGVRNTDIIDAFVPNHSEEAFRVMVRTIKLWTKKRGIYGYVYC-----FLNGISIEILVAQVISENYQLDN--VRLLEKFFQVYSSWDWLRTPVMLGTNDDFNDKKKE-------------GVIQILTPASPSENAAFSITKFSLEMIKRELKRGQEIVHEFSSEGVNDWAKL 317
BLAST of SMED30027788 vs. Ensembl Cavefish
Match: papola (poly(A) polymerase alpha [Source:NCBI gene;Acc:103028065]) HSP 1 Score: 50.0618 bits (118), Expect = 6.453e-6 Identity = 58/223 (26.01%), Postives = 102/223 (45.74%), Query Frame = 1 Query: 457 IPVLELTISNNSFDFLLCFLPSQYCMSKKPIFDLRNPSENLLEQMDFKSILALNSLRNSLLIRDYLGDLFSIYQETLFHLKKWAIFKLIYFKSTSNFLNGTSLAIMLASIFHKCQQKSSNVIGYL-YAFFRHYAELNWSTQTINIGNEKFIDNVREIVKRNSYFLTHKNAIVTILTPAMPQQNCARNINKLSLDRIVHYFREAYF----ILENN-DWKFLIDS 1107 +PV++L+ D L L Q DLR+ + LL+ +D + I +LN R + I + ++ + ++ TL +K WA IY + FL G S A+++A CQ + V L + FF +++ W + E N+ V + + ++ I+TPA PQQN N++ + + +V F++ IL+N DW L ++ Sbjct: 155 VPVIKLSFDGIEIDILFARLALQTIPEN---LDLRD--DGLLKNLDIRCIRSLNGCRVTDEILHLVPNIEN-FRLTLRAIKLWAKRHNIY-SNILGFLGGVSWAMLVA---RTCQLYPNAVASTLVHKFFLVFSKWEWPNPVLLKQPEDC--NLNLPVWDPRVTPSDRYHLMPIITPAYPQQNSTYNVSVSTRNIMVEEFKQGLAITDEILQNKADWSKLFEA 365
BLAST of SMED30027788 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000005362.1 (pep scaffold:Pmarinus_7.0:GL481270:231683:246917:-1 gene:ENSPMAG00000004864.1 transcript:ENSPMAT00000005362.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 48.9062 bits (115), Expect = 2.363e-6 Identity = 63/302 (20.86%), Postives = 116/302 (38.41%), Query Frame = 1 Query: 181 ENGTAALSYTVRKIFEWMKGFLKDIELNS---ENMYFYLFPVGSITYHKSYPDNPKDFVLCLPGIIKLNKVYESLVPFLNKNGNFQVVANLSSRSIPVLELTISNNSFDFLLCFLPSQYCMSKKPIFDLRNPSENLLEQMDFKSILALNSLRNSLLIRDYLGDLFSIYQETLFHLKKWAIFKLIYFKSTSNFLNGTSLAIMLASI--FHKCQQKSSNVIGYLYAFFRHYAELNWSTQTINIGNEKFIDNVREIVKRNSYFLTHKNAIVTILTPAMPQQNCARNINKLSLDRIVHYFREAYFI 1071 E A L + W++ F + +L+ EN+ + GS D D + P + + S L + + + +P++ D L L Q K DLRN +N+L +D + I +LN R + I + ++ ++ L +K WA +Y + FL G S ++++A I + C S+ L+ FF +++ W + + +F + V T + ++ I+TP+ PQQN N+ S + R + Sbjct: 61 EQRLAVLGKLNHMVNRWVRDFAEAKDLSPSIIENISAKICTFGSFRLGVHNKDADIDALCVAPQHVDRTDFFTSFCELLKETNGVTSIRAVEDAFVPLIRFKFDGIEIDLLFARLNMQSIPKK---LDLRN--DNILRNLDIRCIRSLNGCRVTDEILHLVPNV-ETFRLALHAVKLWAKHHGLY-SNILGFLGGVSWSMLVARICQLYPCATAST----LLHKFFLVFSQWEWPKPVL-LKQPEF-SRLNLPVWDPRVNPTDRCHLMPIITPSYPQQNSTYNVTVSSRAIVTAALRPGLVV 349
BLAST of SMED30027788 vs. Planmine SMEST
Match: SMESG000015274.1 (SMESG000015274.1) HSP 1 Score: 943.34 bits (2437), Expect = 0.000e+0 Identity = 470/474 (99.16%), Postives = 471/474 (99.37%), Query Frame = 1 Query: 121 MNAHSDHVCIVEQEEYFPLNENGTAALSYTVRKIFEWMKGFLKDIELNSENMYFYLFPVGSITYHKSYPDNPKDFVLCLPGIIKLNKVYESLVPFLNKNGNFQVVANLSSRSIPVLELTISNNSFDFLLCFLPSQYCMSKKPIFDLRNPSENLLEQMDFKSILALNSLRNSLLIRDYLGDLFSIYQETLFHLKKWAIFKLIYFKSTSNFLNGTSLAIMLASIFHKCQQKSSNVIGYLYAFFRHYAELNWSTQTINIGNEKFIDNVREIVKRNSYFLTHKNAIVTILTPAMPQQNCARNINKLSLDRIVHYFREAYFILENNDWKFLIDSYLMNSLTLLDFVHYAKSIKSAELPQIVLLSITEEKSLDNGAVFVEFEELIKLKLKTDCCHETVLHCPLVIRNVIVDSTEXXXXXXXXXXHYVLFNFNSQIQLSKSNIIRIADKDLPFGIKYSVETVQFDDYRIISLNFDSMEKVV 1542 MNAHSDHVCIVEQEEYFPLNENGTAALSYTVRKIFEWMKGFLKDIELNSEN+YFYLFPVGSITYHKSYPDNPKDFVLCLPGIIKLNKVYESLVPFLNKNGNFQVVANLSSRSIPVLELTISNNSFDFLLCFLPSQYCMSKKPIFDLRNPSENLLEQMDFKSILALNSLRNSLLIRDYLGDLFSIYQETLFHLKKWAIFKLIYFKSTSNFLNGTSLAIMLASIFHKCQQKSS VIGYLYAFFRHYAELNWSTQTINIGNEKFIDNVREI KRNSYFLTHKNAIVTILTPAMPQQNCARNINKLSLDRIVHYFREAYFILENNDWKFLIDSYLMNSLTLLDFVHYA SIKSAELPQIVLLSITEEKSLDNGAVFVEFEELIKLKLKTDCCHETVLHCPLVIRNVIVDSTERRQQRQRRNRHYVLFNFNSQIQLSKSNIIRIADKDLPFGIKYSVETVQFDDYRIISLNFDSMEKVV Sbjct: 1 MNAHSDHVCIVEQEEYFPLNENGTAALSYTVRKIFEWMKGFLKDIELNSENIYFYLFPVGSITYHKSYPDNPKDFVLCLPGIIKLNKVYESLVPFLNKNGNFQVVANLSSRSIPVLELTISNNSFDFLLCFLPSQYCMSKKPIFDLRNPSENLLEQMDFKSILALNSLRNSLLIRDYLGDLFSIYQETLFHLKKWAIFKLIYFKSTSNFLNGTSLAIMLASIFHKCQQKSSTVIGYLYAFFRHYAELNWSTQTINIGNEKFIDNVREIAKRNSYFLTHKNAIVTILTPAMPQQNCARNINKLSLDRIVHYFREAYFILENNDWKFLIDSYLMNSLTLLDFVHYAISIKSAELPQIVLLSITEEKSLDNGAVFVEFEELIKLKLKTDCCHETVLHCPLVIRNVIVDSTERRQQRQRRNRHYVLFNFNSQIQLSKSNIIRIADKDLPFGIKYSVETVQFDDYRIISLNFDSMEKVV 474
BLAST of SMED30027788 vs. Planmine SMEST
Match: SMESG000072012.1 (SMESG000072012.1) HSP 1 Score: 61.6178 bits (148), Expect = 1.290e-9 Identity = 69/296 (23.31%), Postives = 131/296 (44.26%), Query Frame = 1 Query: 286 LFPVGSITYHKSYPDNPKDFVLCLPGIIKLNKVYESLVPFLNKNGNFQVVANLSSRSIPVLELTISNNSFDFL-----LCFLPSQYCMSKKPIFDLRNPSENLLEQMDFKSILALNSLRNSLLIRDYLGDLFSIYQETLFHLKKWAIFKLIYFKSTSNFLNGTSLAIMLASIFHKCQ-QKSSNVIGYLYAFFRHYA-ELNWSTQTINIGNEKFIDNVREIVKRNSYF-LTHKNAIVTILTPAMPQQNCARNINKLSLDRIVHYFREAYFILENNDWKFLIDSYLMNSLTLLDFVHY 1149 +F GS ++ D +L P I + ++ V FL +N Q + ++ +PVL++ N D L L +P +C+S+ S+ LL MD + + ++N +R + I + D I++ L ++ WA + IY + F G S AI++A + CQ ++V + FF+ Y + W + + E+ +V +++ + + +N ++ ILTP+ P QN N+ + +V ++A+ I++ K L L + HY Sbjct: 90 IFTFGSYRLGVNFSGADIDALLVGPKFISREEFFDDFVTFLLENPQAQEIHSVPKAFVPVLKMKFCNVEIDLLFASVDLMSIPHDFCLSEN--------SDQLLRNMDERDVRSVNGVRVTDDILRLVYDK-KIFKSALKIIRIWAKRRCIY-SNAMGFCGGVSWAILVARV---CQLWPLASVSTIVINFFKFYGTKWRWPSPVVLKDVEE--SSVLHLMQWDPRINPSDQNHVMPILTPSYPSQNSTYNVCESHKKFMVDQMQKAFRIIQQISLKEKTFQDLFKPLFFFTYRHY 370
BLAST of SMED30027788 vs. Planmine SMEST
Match: SMESG000072012.1 (SMESG000072012.1) HSP 1 Score: 61.6178 bits (148), Expect = 1.336e-9 Identity = 69/296 (23.31%), Postives = 131/296 (44.26%), Query Frame = 1 Query: 286 LFPVGSITYHKSYPDNPKDFVLCLPGIIKLNKVYESLVPFLNKNGNFQVVANLSSRSIPVLELTISNNSFDFL-----LCFLPSQYCMSKKPIFDLRNPSENLLEQMDFKSILALNSLRNSLLIRDYLGDLFSIYQETLFHLKKWAIFKLIYFKSTSNFLNGTSLAIMLASIFHKCQ-QKSSNVIGYLYAFFRHYA-ELNWSTQTINIGNEKFIDNVREIVKRNSYF-LTHKNAIVTILTPAMPQQNCARNINKLSLDRIVHYFREAYFILENNDWKFLIDSYLMNSLTLLDFVHY 1149 +F GS ++ D +L P I + ++ V FL +N Q + ++ +PVL++ N D L L +P +C+S+ S+ LL MD + + ++N +R + I + D I++ L ++ WA + IY + F G S AI++A + CQ ++V + FF+ Y + W + + E+ +V +++ + + +N ++ ILTP+ P QN N+ + +V ++A+ I++ K L L + HY Sbjct: 91 IFTFGSYRLGVNFSGADIDALLVGPKFISREEFFDDFVTFLLENPQAQEIHSVPKAFVPVLKMKFCNVEIDLLFASVDLMSIPHDFCLSEN--------SDQLLRNMDERDVRSVNGVRVTDDILRLVYDK-KIFKSALKIIRIWAKRRCIY-SNAMGFCGGVSWAILVARV---CQLWPLASVSTIVINFFKFYGTKWRWPSPVVLKDVEE--SSVLHLMQWDPRINPSDQNHVMPILTPSYPSQNSTYNVCESHKKFMVDQMQKAFRIIQQISLKEKTFQDLFKPLFFFTYRHY 371 The following BLAST results are available for this feature:
BLAST of SMED30027788 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30027788 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 3
BLAST of SMED30027788 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30027788 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30027788 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30027788 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30027788 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 1
BLAST of SMED30027788 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30027788 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of SMED30027788 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of SMED30027788 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30027788 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30027788 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30027788 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30027788 ID=SMED30027788|Name=SMED30027788|organism=Schmidtea mediterranea sexual|type=transcript|length=1820bpback to top protein sequence of SMED30027788-orf-1 >SMED30027788-orf-1 ID=SMED30027788-orf-1|Name=SMED30027788-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=482bp MNAHSDHVCIVEQEEYFPLNENGTAALSYTVRKIFEWMKGFLKDIELNSEback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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