ATP dependent RNA helicase DDX5

Overview


Name	ATP dependent RNA helicase DDX5
Smed ID	SMED30027701
Length (bp)	2292

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of ATP dependent RNA helicase DDX5 (SMED30027701) t-SNE clustered cells

Violin plots show distribution of expression levels for ATP dependent RNA helicase DDX5 (SMED30027701) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of ATP dependent RNA helicase DDX5 (SMED30027701) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for ATP dependent RNA helicase DDX5 (SMED30027701) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30027701

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 17

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
nervous system	SMED30027701	h1SMcG0014927	dd_Smed_v4_747_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30027701	h1SMcG0014927	dd_Smed_v4_747_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30027701	h1SMcG0014927	dd_Smed_v4_747_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30027701	h1SMcG0014927	dd_Smed_v4_747_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30027701	h1SMcG0014927	dd_Smed_v4_747_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30027701	h1SMcG0014927	dd_Smed_v4_747_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30027701	h1SMcG0014927	Contig55289	newmark_ests	PMID:29674431 Fincher et al., 2018
pharynx	SMED30027701	h1SMcG0014927	dd_Smed_v4_3816_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30027701	h1SMcG0014927	dd_Smed_v4_3816_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30027701	h1SMcG0014927	dd_Smed_v4_3816_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30027701	h1SMcG0014927	dd_Smed_v4_3816_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30027701	h1SMcG0014927	dd_Smed_v4_3816_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30027701	h1SMcG0014927	dd_Smed_v4_3816_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30027701	h1SMcG0014927	dd_Smed_v6_747_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018
neoblast	SMED30027701	h1SMcG0014927	dd_Smed_v6_3816_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018
neoblast	SMED30027701	h1SMcG0014927	SMED_06736_V2_1	GPL14150	PMID:22385657 Wagner et al., 2012
neoblast	SMED30027701	h1SMcG0014927	SMED_06736_V2_1	GPL14150_gene_models	PMID:22385657 Wagner et al., 2012

Note: Hover over icons to view figure legend

Homology

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BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Human
Match: DDX17 (DEAD-box helicase 17 [Source:HGNC Symbol;Acc:HGNC:2740])

HSP 1 Score: 87.4261 bits (215), Expect = 5.004e-17
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASNR 666
            +D++D+++VINYDYP+  EDY+HRIGRTARS  KG AYTFF P   K  QA++LI +LEEA Q +  +L  +  +R
Sbjct:  482 LDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLK--QARELIKVLEEANQAINPKLMQLVDHR 555

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Human
Match: DDX17 (DEAD-box helicase 17 [Source:HGNC Symbol;Acc:HGNC:2740])

HSP 1 Score: 87.4261 bits (215), Expect = 5.017e-17
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASNR 666
            +D++D+++VINYDYP+  EDY+HRIGRTARS  KG AYTFF P   K  QA++LI +LEEA Q +  +L  +  +R
Sbjct:  482 LDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLK--QARELIKVLEEANQAINPKLMQLVDHR 555

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Human
Match: DDX17 (DEAD-box helicase 17 [Source:HGNC Symbol;Acc:HGNC:2740])

HSP 1 Score: 87.0409 bits (214), Expect = 5.091e-17
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASNR 666
            +D++D+++VINYDYP+  EDY+HRIGRTARS  KG AYTFF P   K  QA++LI +LEEA Q +  +L  +  +R
Sbjct:  482 LDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLK--QARELIKVLEEANQAINPKLMQLVDHR 555

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Human
Match: DDX17 (DEAD-box helicase 17 [Source:HGNC Symbol;Acc:HGNC:2740])

HSP 1 Score: 87.0409 bits (214), Expect = 5.105e-17
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASNR 666
            +D++D+++VINYDYP+  EDY+HRIGRTARS  KG AYTFF P   K  QA++LI +LEEA Q +  +L  +  +R
Sbjct:  482 LDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLK--QARELIKVLEEANQAINPKLMQLVDHR 555

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Human
Match: DDX5 (DEAD-box helicase 5 [Source:HGNC Symbol;Acc:HGNC:2746])

HSP 1 Score: 84.3445 bits (207), Expect = 2.368e-16
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTEL 645
            +D++D+++VINYDYP+  EDYIHRIGRTARS K G AYTFF P  +  +Q  DLI +L EA Q +  +L
Sbjct:  326 LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTP--NNIKQVSDLISVLREANQAINPKL 392

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BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Celegans
Match: ddx-17 (DEAD boX helicase homolog [Source:UniProtKB/TrEMBL;Acc:Q9XUW5])

HSP 1 Score: 95.5153 bits (236), Expect = 3.308e-20
Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVAS 660
            +D+DDI++VINYDYP+  EDY+HRIGRT RS KKG AYTFF        +A+DL+ +L+EAKQ VP  LRD+A+
Sbjct:  440 LDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFT--HTNASKAKDLLKVLDEAKQTVPQALRDMAN 511

[Close]

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVAS 660
            +D+DDI++VINYDYP+  EDY+HRIGRT RS KKG AYTFF        +A+DL+ +L+EAKQ VP  LRD+A+
Sbjct:  440 LDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFT--HTNASKAKDLLKVLDEAKQTVPQALRDMAN 511

[Close]

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVAS 660
            +D+DDI++VINYDYP+  EDY+HRIGRT RS KKG AYTFF        +A+DL+ +L+EAKQ VP  LRD+A+
Sbjct:  440 LDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFT--HTNASKAKDLLKVLDEAKQTVPQALRDMAN 511

[Close]

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVAS 660
            +D+DDI++VINYDYP+  EDY+HRIGRT RS KKG AYTFF        +A+DL+ +L+EAKQ VP  LRD+A+
Sbjct:  440 LDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFT--HTNASKAKDLLKVLDEAKQTVPQALRDMAN 511

[Close]

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVAS 660
            +D+DDI++VINYDYP+  EDY+HRIGRT RS KKG AYTFF        +A+DL+ +L+EAKQ VP  LRD+A+
Sbjct:  440 LDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFT--HTNASKAKDLLKVLDEAKQTVPQALRDMAN 511

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Fly
Match: mahe (gene:FBgn0029979 transcript:FBtr0071132)

HSP 1 Score: 85.5001 bits (210), Expect = 9.097e-17
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVA 657
            +D++D++YVINYDYP+  E+Y+HRIGRT R  + G AYTFF P  D  +QA++LI +LEEA Q     L D+A
Sbjct:  555 LDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTP--DNAKQARELISVLEEAGQTPSQALLDLA 625

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Fly
Match: mahe (gene:FBgn0029979 transcript:FBtr0344137)

HSP 1 Score: 85.5001 bits (210), Expect = 9.097e-17
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVA 657
            +D++D++YVINYDYP+  E+Y+HRIGRT R  + G AYTFF P  D  +QA++LI +LEEA Q     L D+A
Sbjct:  555 LDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTP--DNAKQARELISVLEEAGQTPSQALLDLA 625

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Fly
Match: CG10077 (gene:FBgn0035720 transcript:FBtr0333083)

HSP 1 Score: 82.8037 bits (203), Expect = 5.627e-16
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASN 663
            +D+DD+++VINYDYPS  EDY+HRIGRT RS   G AYT F        +A DLI +L EA Q +  +L ++A N
Sbjct:  468 LDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFT--HSNANKANDLIQVLREANQTINPKLMNMAMN 540

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Fly
Match: CG10077 (gene:FBgn0035720 transcript:FBtr0076940)

HSP 1 Score: 82.8037 bits (203), Expect = 5.627e-16
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASN 663
            +D+DD+++VINYDYPS  EDY+HRIGRT RS   G AYT F        +A DLI +L EA Q +  +L ++A N
Sbjct:  468 LDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFT--HSNANKANDLIQVLREANQTINPKLMNMAMN 540

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Fly
Match: Rm62 (gene:FBgn0003261 transcript:FBtr0302597)

HSP 1 Score: 82.4185 bits (202), Expect = 6.629e-16
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASN 663
            +D+D I+YVIN+DYP   EDYIHRIGRT RS  KG ++ FF   K+  +QA+ L+ +L EA QE+   L ++A N
Sbjct:  453 LDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFT--KNNAKQAKALVDVLREANQEINPALENLARN 525

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Zebrafish
Match: si:dkey-156n14.5 (si:dkey-156n14.5 [Source:ZFIN;Acc:ZDB-GENE-030131-18])

HSP 1 Score: 89.3521 bits (220), Expect = 6.762e-18
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTEL 645
            +D++D+++VINYDYP+  EDY+HRIGRTARS  KG AYTFF P     RQA+DL+ +LEEA+Q +  +L
Sbjct:  417 LDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTP--GNLRQARDLVRVLEEARQAINPKL 483

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Zebrafish
Match: DDX17 (si:dkey-156n14.5 [Source:ZFIN;Acc:ZDB-GENE-030131-18])

HSP 1 Score: 89.3521 bits (220), Expect = 7.159e-18
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTEL 645
            +D++D+++VINYDYP+  EDY+HRIGRTARS  KG AYTFF P     RQA+DL+ +LEEA+Q +  +L
Sbjct:  406 LDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTP--GNLRQARDLVRVLEEARQAINPKL 472

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Zebrafish
Match: ddx5 (DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925])

HSP 1 Score: 86.2705 bits (212), Expect = 3.328e-17
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASNR 666
            +D++D+++VIN+DYP+  EDYIHRIGRTARS K G AYTFF P  +  +QA DL+ +L EA Q +  +L  +A +R
Sbjct:  407 LDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTP--NNMKQAHDLVSVLREANQAINPKLIQMAEDR 480

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Zebrafish
Match: ddx5 (DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925])

HSP 1 Score: 84.3445 bits (207), Expect = 2.024e-16
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVA 657
            +D++D+++VIN+DYP+  EDYIHRIGRTARS K G AYTFF P  +  +QA DL+ +L EA Q +  +L  +A
Sbjct:  407 LDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTP--NNMKQAHDLVSVLREANQAINPKLIQMA 477

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Zebrafish
Match: ddx4 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Source:ZFIN;Acc:ZDB-GENE-990415-272])

HSP 1 Score: 78.5666 bits (192), Expect = 1.383e-14
Identity = 34/73 (46.58%), Postives = 51/73 (69.86%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVA 657
            +DI+ +++V+N+D PS +++Y+HRIGRT R G  G A +FFNP  D P  A+ L+ +L  A+Q VP  L +VA
Sbjct:  576 LDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFNPESDTPL-ARSLVKVLSGAQQVVPKWLEEVA 647

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Xenopus
Match: ddx17 (DEAD-box helicase 17 [Source:NCBI gene;Acc:549535])

HSP 1 Score: 89.3521 bits (220), Expect = 7.357e-18
Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 1

Query:  430 WEYVDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTEL 645
            W   D++DI++VINYDYP+  EDY+HRIGRTARS  KG AYTFF P   K  QA++L+ +LEEA Q +  +L
Sbjct:  372 WVLCDVEDIKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLK--QARELVKVLEEANQTINPKL 441

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Xenopus
Match: ddx5 (DEAD-box helicase 5 [Source:NCBI gene;Acc:394837])

HSP 1 Score: 86.2705 bits (212), Expect = 2.715e-17
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASNR 666
            +D++D+++VINYDYP+  EDYIHRIGRTARS K G AYTFF P   K  Q  DLI +L EA Q +  +L  +  +R
Sbjct:  300 LDVEDVKFVINYDYPNSSEDYIHRIGRTARSSKTGTAYTFFTPGNIK--QVNDLISVLREANQAINPKLLQLVEDR 373

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Xenopus
Match: ddx17 (DEAD-box helicase 17 [Source:NCBI gene;Acc:549535])

HSP 1 Score: 85.8853 bits (211), Expect = 5.182e-17
Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTEL 645
            +D++DI++VINYDYP+  EDY+HRIGRTARS  KG AYTFF P   K  QA++L+ +LEEA Q +  +L
Sbjct:  353 LDVEDIKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLK--QARELVKVLEEANQTINPKL 419

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Xenopus
Match: ddx17 (DEAD-box helicase 17 [Source:NCBI gene;Acc:549535])

HSP 1 Score: 85.8853 bits (211), Expect = 6.541e-17
Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTEL 645
            +D++DI++VINYDYP+  EDY+HRIGRTARS  KG AYTFF P   K  QA++L+ +LEEA Q +  +L
Sbjct:  380 LDVEDIKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLK--QARELVKVLEEANQTINPKL 446

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Xenopus
Match: ddx17 (DEAD-box helicase 17 [Source:NCBI gene;Acc:549535])

HSP 1 Score: 85.8853 bits (211), Expect = 7.944e-17
Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTEL 645
            +D++DI++VINYDYP+  EDY+HRIGRTARS  KG AYTFF P   K  QA++L+ +LEEA Q +  +L
Sbjct:  395 LDVEDIKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLK--QARELVKVLEEANQTINPKL 461

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Mouse
Match: Ddx17 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Source:MGI Symbol;Acc:MGI:1914290])

HSP 1 Score: 87.4261 bits (215), Expect = 2.953e-17
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASNR 666
            +D++D+++VINYDYP+  EDY+HRIGRTARS  KG AYTFF P   K  QA++LI +LEEA Q +  +L  +  +R
Sbjct:  403 LDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLK--QARELIKVLEEANQAINPKLMQLVDHR 476

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Mouse
Match: Ddx17 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Source:MGI Symbol;Acc:MGI:1914290])

HSP 1 Score: 87.4261 bits (215), Expect = 2.964e-17
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASNR 666
            +D++D+++VINYDYP+  EDY+HRIGRTARS  KG AYTFF P   K  QA++LI +LEEA Q +  +L  +  +R
Sbjct:  403 LDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLK--QARELIKVLEEANQAINPKLMQLVDHR 476

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Mouse
Match: Ddx5 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037])

HSP 1 Score: 84.7297 bits (208), Expect = 1.797e-16
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTEL 645
            +D++D+++VINYDYP+  EDYIHRIGRTARS K G AYTFF P  +  +Q  DLI +L EA Q +  +L
Sbjct:  405 LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTP--NNIKQVSDLISVLREANQAINPKL 471

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Mouse
Match: Ddx4 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Source:MGI Symbol;Acc:MGI:102670])

HSP 1 Score: 74.3294 bits (181), Expect = 3.959e-13
Identity = 34/79 (43.04%), Postives = 55/79 (69.62%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVA-SNRIP 672
            +DI+++++VIN+D PS +++Y+HRIGRT R G  G A +FF+   D    AQ L+ +L +A+Q+VP  L ++A S  +P
Sbjct:  577 LDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDSDN-HLAQPLVKVLSDAQQDVPAWLEEIAFSTYVP 654

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Mouse
Match: Ddx4 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Source:MGI Symbol;Acc:MGI:102670])

HSP 1 Score: 73.9442 bits (180), Expect = 4.546e-13
Identity = 34/79 (43.04%), Postives = 55/79 (69.62%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVA-SNRIP 672
            +DI+++++VIN+D PS +++Y+HRIGRT R G  G A +FF+   D    AQ L+ +L +A+Q+VP  L ++A S  +P
Sbjct:  603 LDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDSDN-HLAQPLVKVLSDAQQDVPAWLEEIAFSTYVP 680

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. UniProt/SwissProt
Match: sp|P46942|DB10_NICSY (ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.105e-19
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVAS 660
            +DI DI  VINYD+P+ +EDY+HRIGRT R+G  G+AYTFF+    K   A DL+ +LE A Q VPTELRD+AS
Sbjct:  453 LDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQDSK--HALDLVKVLEGANQCVPTELRDMAS 524

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. UniProt/SwissProt
Match: sp|Q5QMN3|RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0197200 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.627e-18
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASNRIP 672
            +D+ D++YVINYD+P  LEDY+HRIGRT R+G KG AYTFF       R A+DLI ILEEA Q+V  EL ++     P
Sbjct:  400 LDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT--AANARFAKDLINILEEAGQKVSPELANMGRGAPP 475

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. UniProt/SwissProt
Match: sp|Q4PHU9|DBP2_USTMA (ATP-dependent RNA helicase DBP2 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP2 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.845e-17
Identity = 38/72 (52.78%), Postives = 55/72 (76.39%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDV 654
            +D+ DI YVINYD+P+  EDY+H+IGRT R+G+ G AYT+F P  +  + A++LI IL EAKQE+P E+ ++
Sbjct:  440 LDVKDISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTP--ENSKSARELIGILREAKQEIPREIEEM 509

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. UniProt/SwissProt
Match: sp|Q5JKF2|RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.901e-17
Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVAS 660
            +DI DI  VINYD+P+ +EDY+HRIGRT R+G  G+AYTFF     K   A DLI ILE A Q VP +L D+AS
Sbjct:  458 LDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSK--YAADLIKILEGANQRVPRDLADMAS 529

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. UniProt/SwissProt
Match: sp|Q9LYJ9|RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana OX=3702 GN=RH46 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 7.029e-17
Identity = 39/74 (52.70%), Postives = 54/74 (72.97%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVAS 660
            +D+ DI  V+NYD+P+ +EDY+HRIGRT R+G  G+AYTFF     K   A DLI ILE A Q+VP ++R++A+
Sbjct:  469 LDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAK--HASDLIKILEGANQKVPPQVREMAT 540

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. TrEMBL
Match: A4V6K6 (Probable ATP-dependent RNA helicase (Fragment) OS=Dugesia japonica OX=6161 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.686e-39
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASNR 666
            +DIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNP KDKPRQAQDLIMILEEAKQEVP+ELRDVA NR
Sbjct:   20 LDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPTKDKPRQAQDLIMILEEAKQEVPSELRDVACNR 95

HSP 2 Score: 62.003 bits (149), Expect = 2.737e-6
Identity = 44/91 (48.35%), Postives = 59/91 (64.84%), Query Frame = 1

Query: 1198 KLHDELSSENREPLDIQLTVNENEFEIEMSKSRLKKD-----IGEERNKENKVYENC-MWQNNXXXXXXXXXXXXXXXXXDMDIDEYRKSF 1452
            K  DE++ EN+EPLDIQLT+NEN+F++E+SKSR K D     +  + N++N++ E   MWQNN         P    HEVDMDI+EY  SF
Sbjct:  277 KSQDEVNLENKEPLDIQLTINENDFDMEISKSRSKVDADLAPMEIDENRKNEINEKISMWQNN--FSEEVSEPPAIRHEVDMDIEEYNYSF 365

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. TrEMBL
Match: A0A0N4XLP7 (Helicase C-terminal domain-containing protein OS=Nippostrongylus brasiliensis OX=27835 GN=NBR_LOCUS3449 PE=4 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.223e-20
Identity = 45/72 (62.50%), Postives = 54/72 (75.00%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDV 654
            +D+DDI+YVINYDYP+  EDY+HRIGRT R  KKG AYTFF P      +A+DLI +LEEA Q VP  LRD+
Sbjct:   14 IDVDDIKYVINYDYPNNSEDYVHRIGRTGRRDKKGTAYTFFTPQ--NAAKARDLIKVLEEAGQNVPQPLRDL 83

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. TrEMBL
Match: A9V234 (p68DDX5 RNA helicase OS=Monosiga brevicollis OX=81824 GN=p68DDX5 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.521e-19
Identity = 47/74 (63.51%), Postives = 60/74 (81.08%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVAS 660
            +D+ DI+YVIN+DYP+  EDY+HRIGRTAR G +G AYTFF+      RQA+DL+ +LEEAKQE+P ELRD+AS
Sbjct:  373 LDVKDIKYVINFDYPNNSEDYVHRIGRTARGGGEGTAYTFFS--SKNARQAKDLVSVLEEAKQEIPRELRDMAS 444

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. TrEMBL
Match: A0A0X3PLA0 (Putative ATP-dependent RNA helicase DDX17 (Fragment) OS=Schistocephalus solidus OX=70667 GN=DDX17 PE=4 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.342e-19
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASN 663
            +DIDDIEYV+NYD+P++ EDYIHRIGRTARS KKG A+TFF   +   +QA DL+ ILEEA QEV  +L  +A  
Sbjct:   57 LDIDDIEYVVNYDFPNQTEDYIHRIGRTARSNKKGTAFTFFT--RKNSKQAADLVEILEEANQEVNPQLLRMAGG 129

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. TrEMBL
Match: F1L4E6 (ATP-dependent RNA helicase DDX17 OS=Ascaris suum OX=6253 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.526e-19
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVA 657
            VD+DDI++VINYDYP+  EDY+HRIGRTAR  KKG AYTFF P  + P+ A+DLI ++EEA Q VP EL ++A
Sbjct:   20 VDVDDIKFVINYDYPNNSEDYVHRIGRTARCEKKGTAYTFFTP-SNAPK-ARDLIKVMEEANQVVPPELVELA 90

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Cavefish
Match: ENSAMXT00000041608.1 (pep primary_assembly:Astyanax_mexicanus-2.0:13:19468841:19478026:-1 gene:ENSAMXG00000042015.1 transcript:ENSAMXT00000041608.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 91.6633 bits (226), Expect = 5.141e-20
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEV-PTELRDVASNR 666
            +D++D+++VINYDYP+  EDY+HRIGRTARS  KG AYTFF P     RQA+DL+ +LEEA+Q + P  L+ V S R
Sbjct:  189 LDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTP--GNLRQARDLVRVLEEARQAINPKLLQLVDSGR 263

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Cavefish
Match: ENSAMXT00000034258.1 (pep primary_assembly:Astyanax_mexicanus-2.0:13:19468841:19479029:-1 gene:ENSAMXG00000042015.1 transcript:ENSAMXT00000034258.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 91.2781 bits (225), Expect = 6.356e-20
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEV-PTELRDVASNR 666
            +D++D+++VINYDYP+  EDY+HRIGRTARS  KG AYTFF P     RQA+DL+ +LEEA+Q + P  L+ V S R
Sbjct:  197 LDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTP--GNLRQARDLVRVLEEARQAINPKLLQLVDSGR 271

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Cavefish
Match: ENSAMXT00000004594.2 (pep primary_assembly:Astyanax_mexicanus-2.0:13:19468841:19477092:-1 gene:ENSAMXG00000042015.1 transcript:ENSAMXT00000004594.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 91.2781 bits (225), Expect = 1.253e-19
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEV-PTELRDVASNR 666
            +D++D+++VINYDYP+  EDY+HRIGRTARS  KG AYTFF P     RQA+DL+ +LEEA+Q + P  L+ V S R
Sbjct:  237 LDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTP--GNLRQARDLVRVLEEARQAINPKLLQLVDSGR 311

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Cavefish
Match: DDX5 (probable ATP-dependent RNA helicase DDX5 [Source:NCBI gene;Acc:103046784])

HSP 1 Score: 86.6557 bits (213), Expect = 3.879e-17
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVA 657
            +D++D+++VINYDYP+  EDYIHRIGRTARS K G AYTFF P  +  +QA DLI +L EA Q +  +L  +A
Sbjct:  405 LDVEDVKFVINYDYPNSSEDYIHRIGRTARSQKTGTAYTFFTP--NNMKQANDLISVLREANQAINPKLLQMA 475

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Cavefish
Match: ddx5 (probable ATP-dependent RNA helicase DDX5 [Source:NCBI gene;Acc:103024726])

HSP 1 Score: 84.7297 bits (208), Expect = 1.377e-16
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVA 657
            +D++D+++VIN+DYP+  EDYIHRIGRTARS K G AYTFF P  +  +QA DL+ +L EA Q +  +L  +A
Sbjct:  407 LDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTP--NNMKQAHDLVSVLREANQAINPKLIQMA 477

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Sea Lamprey
Match: DDX41 (DEAD-box helicase 41 [Source:HGNC Symbol;Acc:HGNC:18674])

HSP 1 Score: 74.7146 bits (182), Expect = 1.270e-15
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELR 648
            +D  +I++VINYD P ++E+Y+HRIGRT RSGK GIA TF N   D+     DL  +L EAKQ+VP  L+
Sbjct:  110 LDFPNIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKSCDES-VLMDLKALLMEAKQKVPPVLQ 178

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000003898.1 (pep scaffold:Pmarinus_7.0:GL481305:13824:21767:-1 gene:ENSPMAG00000003524.1 transcript:ENSPMAT00000003898.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 67.3958 bits (163), Expect = 5.860e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVA 657
            +DI ++++VIN+D PS +E+Y+HRIGRT R G  G A +F+N   +     ++L+ +L EA QEVP+ L  +A
Sbjct:  387 LDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGQATSFYNEKNEN--MTRELLHLLVEAHQEVPSWLETMA 457

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Sea Lamprey
Match: ddx46 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Source:NCBI gene;Acc:321948])

HSP 1 Score: 62.3882 bits (150), Expect = 3.522e-10
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTEL 645
            +D+  +  V+NYD P+  EDY+HR+GRT R+G KG +YTF     ++ R + D+I  LE +   +P +L
Sbjct:  680 LDVKHLIMVVNYDCPNHYEDYVHRVGRTGRAGNKGYSYTFITS--EQERYSGDIIKALELSGTPLPPDL 746

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Sea Lamprey
Match: ddx23 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:ZFIN;Acc:ZDB-GENE-030131-6215])

HSP 1 Score: 57.7658 bits (138), Expect = 8.186e-9
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFN 564
            +DI D+  V+NYD    +EDY HRIGRT R+GK G++ TF  
Sbjct:  657 IDIHDVSMVLNYDMAKNIEDYTHRIGRTGRAGKSGVSVTFLT 698

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Sea Lamprey
Match: ddx42 (DEAD (Asp-Glu-Ala-Asp) box helicase 42 [Source:ZFIN;Acc:ZDB-GENE-050706-53])

HSP 1 Score: 57.7658 bits (138), Expect = 8.564e-9
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVA 657
            +DI  I+ V+NYD    ++ + HR+GRT R+G+KG A+T     KD    A DL+  LE A Q V  EL D+A
Sbjct:  558 LDIPSIKTVVNYDVARDIDTHTHRVGRTGRAGEKGTAFTLMT-HKDM-NFAGDLVRNLEGANQHVHKELMDLA 628

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Yeast
Match: DBP1 (Putative ATP-dependent RNA helicase of the DEAD-box protein family; mutants show reduced stability of the 40S ribosomal subunit scanning through 5' untranslated regions of mRNAs; protein abundance increases in response to DNA replication stress; DBP1 has a paralog, DED1, that arose from the whole genome duplication [Source:SGD;Acc:S000006040])

HSP 1 Score: 78.5666 bits (192), Expect = 1.380e-15
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVA 657
            +DI ++ +VINYD PS ++DY+HRIGRT R+G  G+A +FFN   +     + L+ IL EA QEVPT L D++
Sbjct:  475 LDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFN--SNNQNIVKGLMEILNEANQEVPTFLSDLS 545

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Yeast
Match: DED1 (ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase; required for translation initiation of all yeast mRNAs; binds to mRNA cap-associated factors, and binding stimulates Ded1p RNA-dependent ATPase activity; mutation in human homolog DBY is associated with male infertility; human homolog DDX3X complements ded1 null mutation; DED1 has a paralog, DBP1, that arose from the whole genome duplication [Source:SGD;Acc:S000005730])

HSP 1 Score: 74.3294 bits (181), Expect = 2.871e-14
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDV 654
            +DI ++ +VINYD PS ++DY+HRIGRT R+G  G+A  FFN   +     + L  IL EA QEVP+ L+D 
Sbjct:  463 LDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFN--SENSNIVKGLHEILTEANQEVPSFLKDA 532

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Yeast
Match: DBP2 (ATP-dependent RNA helicase of the DEAD-box protein family; has strong preference for dsRNA; interacts with YRA1; required for assembly of Yra1p, Nab2p and Mex67p onto mRNA and formation of nuclear mRNP; involved in mRNA decay and rRNA processing; may be involved in suppression of transcription from cryptic initiation sites [Source:SGD;Acc:S000005056])

HSP 1 Score: 72.4034 bits (176), Expect = 1.005e-13
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTEL 645
            +D+  I YVINYD P  +EDY+HRIGRT R+G  G A +FF   ++K   A+ LI I+ EA Q +P EL
Sbjct:  424 IDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTE-QNKGLGAK-LISIMREANQNIPPEL 490

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Yeast
Match: DBP3 (RNA-Dependent ATPase, member of DExD/H-box family; involved in cleavage of site A3 within the ITS1 spacer during rRNA processing; not essential for growth, but deletion causes severe slow-growth phenotype [Source:SGD;Acc:S000003046])

HSP 1 Score: 62.7734 bits (151), Expect = 1.103e-10
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTEL 645
            +DI +++ VIN  +P  +EDY+HRIGRT R+G+ G A+T F   + +   A  L+ +L  A Q VP +L
Sbjct:  423 LDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFT--EQEKHLAGGLVNVLNGANQPVPEDL 489

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Yeast
Match: DBP9 (DEAD-box protein required for 27S rRNA processing; exhibits DNA, RNA and DNA/RNA helicase activities; ATPase activity shows preference for DNA over RNA; DNA helicase activity abolished by mutation in RNA-binding domain [Source:SGD;Acc:S000004266])

HSP 1 Score: 56.6102 bits (135), Expect = 9.306e-9
Identity = 21/46 (45.65%), Postives = 32/46 (69.57%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKD 576
            VD  ++  V+N+D P+  + Y+HR+GRTAR GK G A +F  P+K+
Sbjct:  387 VDFKNVACVLNFDLPTTAKSYVHRVGRTARGGKTGTAISFVVPLKE 432

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Nematostella
Match: EDO38061 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SDX5])

HSP 1 Score: 81.6481 bits (200), Expect = 2.405e-16
Identity = 39/78 (50.00%), Postives = 58/78 (74.36%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTE---LRDVASN 663
            +DI DI++VIN+D+P+  EDY+HRIGRTARS + G +YTFF    +  +QA++L+ +L+EAKQ V  +   L+D+A N
Sbjct:  369 LDISDIKFVINFDFPNCTEDYVHRIGRTARSDRTGTSYTFFT--VNNAKQAKELVSVLQEAKQHVNPKLLNLQDMARN 444

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Nematostella
Match: EDO27708 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T8H9])

HSP 1 Score: 79.7221 bits (195), Expect = 1.839e-15
Identity = 38/77 (49.35%), Postives = 54/77 (70.13%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASNRI 669
            +DIDD+++VIN+D PS +++Y+HRIGRT R G KG A TFF   +D  + A+ L+ +L EA QEVP  L ++A   I
Sbjct:  532 LDIDDVKHVINFDLPSDIDEYVHRIGRTGRIGNKGKATTFFLRGRDD-KVARGLVKVLSEANQEVPEWLEEIAEGAI 607

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Nematostella
Match: EDO42894 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S034])

HSP 1 Score: 75.8702 bits (185), Expect = 3.402e-14
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASNRI 669
            +D+  +  V+NYD P+  EDY+HR+GRT R+G KG AYTF  P  ++ R A D+I  LE A+  VP ++R++A+  I
Sbjct:  448 LDVKHLNLVVNYDCPNHYEDYVHRVGRTGRAGNKGTAYTFLTP--EQGRFAIDVIKALEMAENPVPEDVRNLANTYI 522

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Nematostella
Match: PL10 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SM49])

HSP 1 Score: 74.7146 bits (182), Expect = 6.862e-14
Identity = 36/73 (49.32%), Postives = 56/73 (76.71%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVA 657
            +DI ++++VIN+D P+ +E+Y+HRIGRT R G  G+A +FFN  K+K   A++L+ ILEE+KQE+P+ L  +A
Sbjct:  513 LDIPNVKHVINFDLPTDIEEYVHRIGRTGRVGHTGLATSFFN-HKNK-NVAKELMDILEESKQEIPSWLESMA 583

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Nematostella
Match: VAS1 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SJG3])

HSP 1 Score: 69.707 bits (169), Expect = 1.018e-12
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVA 657
            +DI ++++VINYD P  +E+Y+HR+GRT R G +G A  F+   +D  R A+ L+ +L EA QEVP  L + A
Sbjct:  272 LDIPNVKHVINYDLPQDIEEYVHRVGRTGRIGNEGKATAFYEVGRDD-RLARSLVKVLSEALQEVPAWLDEAA 343

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Medaka
Match: si:dkey-156n14.5 (probable ATP-dependent RNA helicase DDX17 [Source:NCBI gene;Acc:101158507])

HSP 1 Score: 90.8929 bits (224), Expect = 1.739e-18
Identity = 41/69 (59.42%), Postives = 54/69 (78.26%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTEL 645
            +D++D+++VINYDYPS  EDY+HRIGRTARS  KG AYTFF P     RQA+DL+ +LEEA+Q +  +L
Sbjct:  407 LDVEDVKFVINYDYPSSSEDYVHRIGRTARSTNKGTAYTFFTP--GNLRQARDLVRVLEEARQAINPKL 473

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Medaka
Match: ENSORLT00000018170.2 (probable ATP-dependent RNA helicase DDX17 [Source:NCBI gene;Acc:101171584])

HSP 1 Score: 88.5817 bits (218), Expect = 4.999e-18
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTEL 645
            +D++D+++VINYDYP+  EDYIHRIGRTARS  KG AYTFF P     RQA++L+ +LEEA+Q +  +L
Sbjct:  399 LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTNKGTAYTFFTP--GNVRQARELVRVLEEARQAINPKL 465

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Medaka
Match: ENSORLT00000031911.1 (probable ATP-dependent RNA helicase DDX17 [Source:NCBI gene;Acc:101171584])

HSP 1 Score: 88.1965 bits (217), Expect = 9.949e-18
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTEL 645
            +D++D+++VINYDYP+  EDYIHRIGRTARS  KG AYTFF P     RQA++L+ +LEEA+Q +  +L
Sbjct:  404 LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTNKGTAYTFFTP--GNVRQARELVRVLEEARQAINPKL 470

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Medaka
Match: ddx5 (probable ATP-dependent RNA helicase DDX5 [Source:NCBI gene;Acc:101160075])

HSP 1 Score: 87.0409 bits (214), Expect = 2.887e-17
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVA 657
            +D++D+++VINYDYP+  EDYIHRIGRTARS K G AYTFF    +  RQA DLI +L EA Q +  +L  +A
Sbjct:  413 LDVEDVKFVINYDYPNNSEDYIHRIGRTARSSKTGTAYTFFT--ANNMRQASDLIAVLREANQAINPKLLQMA 483

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Medaka
Match: DDX5 (probable ATP-dependent RNA helicase DDX5 [Source:NCBI gene;Acc:101167926])

HSP 1 Score: 86.2705 bits (212), Expect = 4.220e-17
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVA 657
            +D++D+++VINYDYP+  EDYIHRIGRTARS K G AYTFF P  +  +QA DLI +L EA Q +  +L  +A
Sbjct:  411 LDVEDVKFVINYDYPNSSEDYIHRIGRTARSQKTGTAYTFFTP--NNMKQAGDLISVLREANQAINPKLIQMA 481

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Planmine SMEST
Match: SMESG000012031.1 (SMESG000012031.1)

HSP 1 Score: 556.599 bits (1433), Expect = 0.000e+0
Identity = 316/328 (96.34%), Postives = 317/328 (96.65%), Query Frame = 1

Query: 1120 IKREALADKIPNIANEKETHQNELESKLHDELSSENREPLDIQLTVNENEFEIEMSKSRLKKDIGEERNKENKVYENCMWQNNXXXXXXXXXXXXXXXXXDMDIDEYRKSFDALNQTRQKEKLFDSIRXXXXXXXXXXQRPIEVMTNEEIDIITTVEQPPVKMTAEKSVQYEEPELDNIAMKESIKSDVEVLLEKSTEKDQKVKVLESDEEPKTSNKSNLDEKCKSRNKSDNQHSSRDDRDEKFKKSKNESDKSKRTEDKSDSRVDNRKESKRDSKGEPRVSRWEIHSSNKNEEIKAMGKWETKSELNQDKCEAEKTFDSKEEKPCNM 2103
            IKREALADKIPNIANEKETHQNELESKLHDELSSENREPLDIQLTVNENEFEIEMSKSRLKKDIGEERNKENKVYENCMWQNNFAEEVFEVP VVAHHEVDMDIDEYRKSFDALNQTRQKEKLFDSIRKIIKIDDAAKQRPIEV+TNEEIDIITTVEQPPVKMTAEKSVQYEEPELDNIAMKESIKSDVEVLLEKSTEKDQKVKVLESDEEPKTSNKSN DEKCKSRNKSDNQHSSRDDRDEKFKKSKN        EDKSDSRVDNRKESKRDSKGEPRVSRWEIHSSNKNEEIKAMGKWETKSELNQDKCEAEKTFDSKEEK CNM
Sbjct:  245 IKREALADKIPNIANEKETHQNELESKLHDELSSENREPLDIQLTVNENEFEIEMSKSRLKKDIGEERNKENKVYENCMWQNNFAEEVFEVPLVVAHHEVDMDIDEYRKSFDALNQTRQKEKLFDSIRKIIKIDDAAKQRPIEVITNEEIDIITTVEQPPVKMTAEKSVQYEEPELDNIAMKESIKSDVEVLLEKSTEKDQKVKVLESDEEPKTSNKSNSDEKCKSRNKSDNQHSSRDDRDEKFKKSKN--------EDKSDSRVDNRKESKRDSKGEPRVSRWEIHSSNKNEEIKAMGKWETKSELNQDKCEAEKTFDSKEEKSCNM 564

HSP 2 Score: 216.468 bits (550), Expect = 5.572e-59
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1

Query:  388 MTHRKTHRQLSGLLWEYVDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASNRIP 672
            MTHRKTHRQLSGLLWEYVDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASNRIP
Sbjct:    1 MTHRKTHRQLSGLLWEYVDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASNRIP 95

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Planmine SMEST
Match: SMESG000012031.1 (SMESG000012031.1)

HSP 1 Score: 553.132 bits (1424), Expect = 0.000e+0
Identity = 316/328 (96.34%), Postives = 317/328 (96.65%), Query Frame = 1

Query: 1120 IKREALADKIPNIANEKETHQNELESKLHDELSSENREPLDIQLTVNENEFEIEMSKSRLKKDIGEERNKENKVYENCMWQNNXXXXXXXXXXXXXXXXXDMDIDEYRKSFDALNQTRQKEKLFDSIRXXXXXXXXXXQRPIEVMTNEEIDIITTVEQPPVKMTAEKSVQYEEPELDNIAMKESIKSDVEVLLEKSTEKDQKVKVLESDEEPKTSNKSNLDEKCKSRNKSDNQHSSRDDRDEKFKKSKNESDKSKRTEDKSDSRVDNRKESKRDSKGEPRVSRWEIHSSNKNEEIKAMGKWETKSELNQDKCEAEKTFDSKEEKPCNM 2103
            IKREALADKIPNIANEKETHQNELESKLHDELSSENREPLDIQLTVNENEFEIEMSKSRLKKDIGEERNKENKVYENCMWQNNFAEEVFEVP VVAHHEVDMDIDEYRKSFDALNQTRQKEKLFDSIRKIIKIDDAAKQRPIEV+TNEEIDIITTVEQPPVKMTAEKSVQYEEPELDNIAMKESIKSDVEVLLEKSTEKDQKVKVLESDEEPKTSNKSN DEKCKSRNKSDNQHSSRDDRDEKFKKSKN        EDKSDSRVDNRKESKRDSKGEPRVSRWEIHSSNKNEEIKAMGKWETKSELNQDKCEAEKTFDSKEEK CNM
Sbjct:  612 IKREALADKIPNIANEKETHQNELESKLHDELSSENREPLDIQLTVNENEFEIEMSKSRLKKDIGEERNKENKVYENCMWQNNFAEEVFEVPLVVAHHEVDMDIDEYRKSFDALNQTRQKEKLFDSIRKIIKIDDAAKQRPIEVITNEEIDIITTVEQPPVKMTAEKSVQYEEPELDNIAMKESIKSDVEVLLEKSTEKDQKVKVLESDEEPKTSNKSNSDEKCKSRNKSDNQHSSRDDRDEKFKKSKN--------EDKSDSRVDNRKESKRDSKGEPRVSRWEIHSSNKNEEIKAMGKWETKSELNQDKCEAEKTFDSKEEKSCNM 931

HSP 2 Score: 170.244 bits (430), Expect = 2.060e-43
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASNRIP 672
            +DIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASNRIP
Sbjct:  385 LDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASNRIP 462

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Planmine SMEST
Match: SMESG000033349.1 (SMESG000033349.1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.085e-19
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVAS 660
            +D+DDI+ VINYD+P++ EDYIHRIGRTARSGK G++YTFFN      + A  LI I+EEAKQ VP  L  +A 
Sbjct:  464 LDVDDIKMVINYDFPNQFEDYIHRIGRTARSGKSGMSYTFFN--NKSAKSASSLIKIMEEAKQIVPDSLYKMAC 535

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Planmine SMEST
Match: SMESG000033349.1 (SMESG000033349.1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.392e-19
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 1

Query:  439 VDIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVAS 660
            +D+DDI+ VINYD+P++ EDYIHRIGRTARSGK G++YTFFN      + A  LI I+EEAKQ VP  L  +A 
Sbjct:  464 LDVDDIKMVINYDFPNQFEDYIHRIGRTARSGKSGMSYTFFN--NKSAKSASSLIKIMEEAKQIVPDSLYKMAC 535

[Close]

BLAST of ATP dependent RNA helicase DDX5 vs. Planmine SMEST
Match: SMESG000033907.1 (SMESG000033907.1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.977e-18
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 1

Query:  433 EYV--DIDDIEYVINYDYPSKLEDYIHRIGRTARSGKKGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVA 657
            EY+  D+DDI+ VINYD+P + EDYIHRIGRT R GK G++YTFFN  +   + A+ L+ ++EEA Q V   L D+A
Sbjct:  405 EYILNDVDDIKVVINYDFPIQFEDYIHRIGRTGRRGKSGVSYTFFN--RKNSKSARQLVKVMEEANQSVSDSLYDLA 479

The following BLAST results are available for this feature:

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Human
BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Celegans
BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Fly
BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Zebrafish
BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Xenopus
BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Mouse
BLAST of ATP dependent RNA helicase DDX5 vs. UniProt/SwissProt
BLAST of ATP dependent RNA helicase DDX5 vs. TrEMBL
BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Cavefish
BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Sea Lamprey
BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Yeast
BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Nematostella
BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Medaka
BLAST of ATP dependent RNA helicase DDX5 vs. Planmine SMEST

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
DDX17	5.004e-17	53.95	DEAD-box helicase 17 [Source:HGNC Symbol;Acc:HGNC:...	[more]
DDX17	5.017e-17	53.95	DEAD-box helicase 17 [Source:HGNC Symbol;Acc:HGNC:...	[more]
DDX17	5.091e-17	53.95	DEAD-box helicase 17 [Source:HGNC Symbol;Acc:HGNC:...	[more]
DDX17	5.105e-17	53.95	DEAD-box helicase 17 [Source:HGNC Symbol;Acc:HGNC:...	[more]
DDX5	2.368e-16	56.52	DEAD-box helicase 5 [Source:HGNC Symbol;Acc:HGNC:2...	[more]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ddx-17	3.308e-20	59.46	DEAD boX helicase homolog [Source:UniProtKB/TrEMB...	[more]
ddx-17	3.308e-20	59.46	DEAD boX helicase homolog [Source:UniProtKB/TrEMB...	[more]
ddx-17	3.308e-20	59.46	DEAD boX helicase homolog [Source:UniProtKB/TrEMB...	[more]
ddx-17	3.308e-20	59.46	DEAD boX helicase homolog [Source:UniProtKB/TrEMB...	[more]
ddx-17	3.308e-20	59.46	DEAD boX helicase homolog [Source:UniProtKB/TrEMB...	[more]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
mahe	9.097e-17	53.42	gene:FBgn0029979 transcript:FBtr0071132	[more]
mahe	9.097e-17	53.42	gene:FBgn0029979 transcript:FBtr0344137	[more]
CG10077	5.627e-16	50.67	gene:FBgn0035720 transcript:FBtr0333083	[more]
CG10077	5.627e-16	50.67	gene:FBgn0035720 transcript:FBtr0076940	[more]
Rm62	6.629e-16	50.67	gene:FBgn0003261 transcript:FBtr0302597	[more]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
si:dkey-156n14.5	6.762e-18	57.97	si:dkey-156n14.5 [Source:ZFIN;Acc:ZDB-GENE-030131-...	[more]
DDX17	7.159e-18	57.97	si:dkey-156n14.5 [Source:ZFIN;Acc:ZDB-GENE-030131-...	[more]
ddx5	3.328e-17	52.63	DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN...	[more]
ddx5	2.024e-16	53.42	DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN...	[more]
ddx4	1.383e-14	46.58	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Source:Z...	[more]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ddx17	7.357e-18	56.94	DEAD-box helicase 17 [Source:NCBI gene;Acc:549535]	[more]
ddx5	2.715e-17	53.95	DEAD-box helicase 5 [Source:NCBI gene;Acc:394837]	[more]
ddx17	5.182e-17	57.97	DEAD-box helicase 17 [Source:NCBI gene;Acc:549535]	[more]
ddx17	6.541e-17	57.97	DEAD-box helicase 17 [Source:NCBI gene;Acc:549535]	[more]
ddx17	7.944e-17	57.97	DEAD-box helicase 17 [Source:NCBI gene;Acc:549535]	[more]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Ddx17	2.953e-17	53.95	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Source:...	[more]
Ddx17	2.964e-17	53.95	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Source:...	[more]
Ddx5	1.797e-16	56.52	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:M...	[more]
Ddx4	3.959e-13	43.04	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Source:M...	[more]
Ddx4	4.546e-13	43.04	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Source:M...	[more]

BLAST of ATP dependent RNA helicase DDX5 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P46942\|DB10_NICSY	4.105e-19	59.46	ATP-dependent RNA helicase-like protein DB10 OS=Ni...	[more]
sp\|Q5QMN3\|RH20_ORYSJ	6.627e-18	55.13	DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sa...	[more]
sp\|Q4PHU9\|DBP2_USTMA	2.845e-17	52.78	ATP-dependent RNA helicase DBP2 OS=Ustilago maydis...	[more]
sp\|Q5JKF2\|RH40_ORYSJ	4.901e-17	58.11	DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sa...	[more]
sp\|Q9LYJ9\|RH46_ARATH	7.029e-17	52.70	DEAD-box ATP-dependent RNA helicase 46 OS=Arabidop...	[more]

BLAST of ATP dependent RNA helicase DDX5 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A4V6K6	5.686e-39	94.74	Probable ATP-dependent RNA helicase (Fragment) OS=...	[more]
A0A0N4XLP7	8.223e-20	62.50	Helicase C-terminal domain-containing protein OS=N...	[more]
A9V234	1.521e-19	63.51	p68DDX5 RNA helicase OS=Monosiga brevicollis OX=81...	[more]
A0A0X3PLA0	3.342e-19	61.33	Putative ATP-dependent RNA helicase DDX17 (Fragmen...	[more]
F1L4E6	4.526e-19	63.01	ATP-dependent RNA helicase DDX17 OS=Ascaris suum O...	[more]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSAMXT00000041608.1	5.141e-20	57.14	pep primary_assembly:Astyanax_mexicanus-2.0:13:194...	[more]
ENSAMXT00000034258.1	6.356e-20	57.14	pep primary_assembly:Astyanax_mexicanus-2.0:13:194...	[more]
ENSAMXT00000004594.2	1.253e-19	57.14	pep primary_assembly:Astyanax_mexicanus-2.0:13:194...	[more]
DDX5	3.879e-17	56.16	probable ATP-dependent RNA helicase DDX5 [Source:N...	[more]
ddx5	1.377e-16	53.42	probable ATP-dependent RNA helicase DDX5 [Source:N...	[more]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
DDX41	1.270e-15	52.86	DEAD-box helicase 41 [Source:HGNC Symbol;Acc:HGNC:...	[more]
ENSPMAT00000003898.1	5.860e-12	43.84	pep scaffold:Pmarinus_7.0:GL481305:13824:21767:-1 ...	[more]
ddx46	3.522e-10	40.58	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Source:...	[more]
ddx23	8.186e-9	52.38	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:...	[more]
ddx42	8.564e-9	43.84	DEAD (Asp-Glu-Ala-Asp) box helicase 42 [Source:ZFI...	[more]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 5


Match Name	E-value	Identity	Description
DBP1	1.380e-15	49.32	Putative ATP-dependent RNA helicase of the DEAD-bo...	[more]
DED1	2.871e-14	48.61	ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helic...	[more]
DBP2	1.005e-13	50.72	ATP-dependent RNA helicase of the DEAD-box protein...	[more]
DBP3	1.103e-10	42.03	RNA-Dependent ATPase, member of DExD/H-box family;...	[more]
DBP9	9.306e-9	45.65	DEAD-box protein required for 27S rRNA processing;...	[more]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO38061	2.405e-16	50.00	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO27708	1.839e-15	49.35	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO42894	3.402e-14	45.45	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
PL10	6.862e-14	49.32	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
VAS1	1.018e-12	45.21	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of ATP dependent RNA helicase DDX5 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
si:dkey-156n14.5	1.739e-18	59.42	probable ATP-dependent RNA helicase DDX17 [Source:...	[more]
ENSORLT00000018170.2	4.999e-18	57.97	probable ATP-dependent RNA helicase DDX17 [Source:...	[more]
ENSORLT00000031911.1	9.949e-18	57.97	probable ATP-dependent RNA helicase DDX17 [Source:...	[more]
ddx5	2.887e-17	56.16	probable ATP-dependent RNA helicase DDX5 [Source:N...	[more]
DDX5	4.220e-17	56.16	probable ATP-dependent RNA helicase DDX5 [Source:N...	[more]

BLAST of ATP dependent RNA helicase DDX5 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000012031.1	5.572e-59	96.34	SMESG000012031.1	[more]
SMESG000012031.1	2.060e-43	96.34	SMESG000012031.1	[more]
SMESG000033349.1	2.085e-19	59.46	SMESG000033349.1	[more]
SMESG000033349.1	2.392e-19	59.46	SMESG000033349.1	[more]
SMESG000033907.1	5.977e-18	53.25	SMESG000033907.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence
protein sequence

transcript sequence

>SMED30027701 ID=SMED30027701|Name=ATP dependent RNA helicase DDX5|organism=Schmidtea mediterranea sexual|type=transcript|length=2292bp
ATAATAATAATTGTTGTTATTATTTGATGAAACAATGAAGAATAGTGTCG
ATGTTTACTAGACATACAAGCCGTTACAACAAAGCGGCACATTTACGGGA
CTAAGCTGACATGTCCATAAATGGTCTATGTTAGCCGTGTGGGCGCATAT
CTGTGTGCATCAACACGGTAATTTCTCACACGAGCCGGTGGAGTGGTCTC
GTTCATCGTGTTGCTGATAACCACCGAATGATGGTTTGCTGTTGCCAAAT
AGCTCATCAGCCTCAGAGATTTGTGTCGTCGACCGGGGTGGTCGATGGAG
CCACAGGTTTTGTCACTGGTTTCCCACCAAGAAAGCCCGTGACACGACAT
CGCTTCGTGGTTCTGGTGATCACTCGGCGCGACTTCAATGACACACAGAA
AGACACATAGACAACTGTCCGGTCTCTTATGGGAGTACGTGGATATTGAT
GATATTGAATATGTCATCAATTATGATTATCCGAGCAAGTTAGAGGATTA
TATACATAGAATTGGCAGAACAGCTAGAAGCGGCAAAAAGGGAATCGCGT
ATACATTTTTCAATCCCATGAAAGATAAGCCTAGACAAGCACAAGATCTA
ATTATGATTCTGGAAGAAGCAAAGCAAGAAGTTCCAACGGAATTAAGAGA
CGTTGCTTCAAATCGAATACCTAGCAAACGATTTAAAAGTAAAAGAAATC
GATCTCGTAGTAAACAGCGATCAAATAGTCCTAAAAGGTCAAGAAGTCGA
AGAAGTAGAAGAAGATCAAAGAGTTCCAAAAAATCGAGAAGTCGTAGTCG
TAGACGATCTCGCAGTCCAAAACGTCGATCGAGAAGTAATCGTAGAAGGC
GCTCACGTAGTGTAAGAAGAAGATCTCGGAGTATTCGAAGATCAAGAAGT
AGAAGACGTCGATCTAGAAGTAATCCAAGAAGATCAATAAATAGACGTCG
AAGAGCAGAAAGTAGAAGAAGAAGCAGAAGTCGGAATGATAGAAGATTGG
CTGTTCCTAGACGACGACGCGTTTCACCTACTCCACCAAGGTTACGTAGA
AGAAAAAGCAGTTCCAGCAGTATATCAGGAAGTCAGTCTAGTGATTCTCG
TTCCAATAGTAGCGTCTCAATAAAACGGGAAGCACTAGCCGATAAGATTC
CAAATATAGCCAATGAAAAAGAAACTCATCAAAATGAACTGGAATCAAAA
CTTCATGACGAATTGAGTTCGGAAAATAGAGAGCCATTGGATATCCAATT
GACAGTTAATGAAAATGAATTTGAAATCGAAATGTCGAAATCAAGATTGA
AAAAAGATATTGGGGAAGAGAGAAATAAAGAAAACAAAGTATACGAAAAT
TGCATGTGGCAAAATAACTTTGCGGAAGAGGTTTTTGAAGTGCCTCCCGT
TGTTGCACACCACGAGGTCGATATGGATATTGATGAATATCGAAAGTCAT
TTGATGCATTGAATCAAACAAGGCAAAAGGAGAAATTATTCGATTCTATT
CGGAAAATAATAAAAATCGATGACGCTGCAAAACAGCGACCGATAGAAGT
TATGACTAATGAAGAAATCGATATTATAACAACTGTTGAGCAGCCACCTG
TTAAAATGACGGCAGAGAAATCTGTCCAATACGAAGAACCGGAATTGGAT
AATATTGCAATGAAGGAATCAATCAAATCAGATGTTGAAGTACTTTTGGA
AAAATCCACTGAAAAGGATCAAAAAGTCAAAGTTCTGGAGTCTGACGAGG
AACCTAAAACCTCCAATAAATCTAATTTGGATGAAAAATGTAAAAGTCGA
AATAAATCCGATAATCAACATAGTTCAAGAGATGATCGTGATGAGAAATT
TAAAAAAAGCAAAAATGAAAGCGATAAATCCAAGCGCACCGAAGACAAAA
GCGATTCTAGAGTGGATAATAGAAAAGAGAGCAAACGTGACTCGAAAGGT
GAACCACGTGTTTCTCGTTGGGAGATTCATTCATCGAATAAAAATGAAGA
AATCAAAGCGATGGGAAAGTGGGAAACTAAATCTGAGCTTAATCAAGATA
AATGTGAAGCTGAAAAAACGTTTGATAGTAAAGAGGAAAAACCTTGTAAT
ATGCTCGAAGAAAAAAAGTTGGAAAAGAAGCATGAGCCGAAAGATGACAA
GAAGCGGGATCATAAAGATGAAAAGAAACACGAACAGAGAGAAGATAAAA
AACGTGATCATAAAGAGGATAAAAAACACGAAACGAAAGACGATAAGAAA
CATGAAGTGAAAGAAGAAAAGAAACATGAAACGAAAGACGAC

protein sequence of SMED30027701-orf-1

>SMED30027701-orf-1 ID=SMED30027701-orf-1|Name=SMED30027701-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=114bp
MTYSISSISTYSHKRPDSCLCVFLCVIEVAPSDHQNHEAMSCHGLSWWET
SDKTCGSIDHPGRRHKSLRLMSYLATANHHSVVISNTMNETTPPARVRNY
RVDAHRYAPTRLT*

protein sequence of SMED30027701-orf-2

>SMED30027701-orf-2 ID=SMED30027701-orf-2|Name=SMED30027701-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=635bp
MTHRKTHRQLSGLLWEYVDIDDIEYVINYDYPSKLEDYIHRIGRTARSGK
KGIAYTFFNPMKDKPRQAQDLIMILEEAKQEVPTELRDVASNRIPSKRFK
SKRNRSRSKQRSNSPKRSRSRRSRRRSKSSKKSRSRSRRRSRSPKRRSRS
NRRRRSRSVRRRSRSIRRSRSRRRRSRSNPRRSINRRRRAESRRRSRSRN
DRRLAVPRRRRVSPTPPRLRRRKSSSSSISGSQSSDSRSNSSVSIKREAL
ADKIPNIANEKETHQNELESKLHDELSSENREPLDIQLTVNENEFEIEMS
KSRLKKDIGEERNKENKVYENCMWQNNFAEEVFEVPPVVAHHEVDMDIDE
YRKSFDALNQTRQKEKLFDSIRKIIKIDDAAKQRPIEVMTNEEIDIITTV
EQPPVKMTAEKSVQYEEPELDNIAMKESIKSDVEVLLEKSTEKDQKVKVL
ESDEEPKTSNKSNLDEKCKSRNKSDNQHSSRDDRDEKFKKSKNESDKSKR
TEDKSDSRVDNRKESKRDSKGEPRVSRWEIHSSNKNEEIKAMGKWETKSE
LNQDKCEAEKTFDSKEEKPCNMLEEKKLEKKHEPKDDKKRDHKDEKKHEQ
REDKKRDHKEDKKHETKDDKKHEVKEEKKHETKDD

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000429	neoblast

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C
IPR027417	P-loop_NTPase

Vocabulary: **molecular function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding
GO:0003723	RNA binding
GO:0004004	ATP-dependent RNA helicase activity
GO:0004386	helicase activity
GO:0005524	ATP binding
GO:0008186	RNA-dependent ATPase activity
GO:0016787	hydrolase activity

Vocabulary: **biological process**
Term	Definition
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0006364	rRNA processing
GO:0010501	RNA secondary structure unwinding
GO:0042254	ribosome biogenesis
GO:0071042	nuclear polyadenylation-dependent mRNA catabolic process
GO:1990120	messenger ribonucleoprotein complex assembly

Vocabulary: **cellular component**
Term	Definition
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005829	cytosol

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 247..267
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 14..94 e-value: 9.9E-21 score: 75.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..280
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 253..280
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 447..627
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 219..246
None	No IPR available	PANTHER	PTHR24031	RNA HELICASE	coord: 19..76
None	No IPR available	PANTHER	PTHR24031:SF25	ATP-DEPENDENT RNA HELICASE DDX46-RELATED	coord: 19..76
None	No IPR available	CDD	cd18787	SF2_C_DEAD	coord: 19..58 e-value: 2.9064E-19 score: 82.17
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 18..49 e-value: 1.2E-7 score: 32.1
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 1..90 score: 11.565
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 18..92