RRM domain-containing protein

Overview


Name	RRM domain-containing protein
Smed ID	SMED30027687
Length (bp)	2110

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of RRM domain-containing protein (SMED30027687) t-SNE clustered cells

Violin plots show distribution of expression levels for RRM domain-containing protein (SMED30027687) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RRM domain-containing protein (SMED30027687) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RRM domain-containing protein (SMED30027687) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30027687

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 13

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
intestinal phagocyte	SMED30027687	SMESG000038824.1	Contig430	newmark_ests	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30027687	SMESG000038824.1	Contig430	uc_Smed_v2	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30027687	SMESG000038824.1	Contig429	newmark_ests	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30027687	SMESG000038824.1	Contig429	uc_Smed_v2	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30027687	SMESG000067788.1	Contig430	newmark_ests	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30027687	SMESG000067788.1	Contig430	uc_Smed_v2	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30027687	SMESG000068628.1	Contig429	newmark_ests	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30027687	SMESG000068628.1	Contig429	uc_Smed_v2	PMID:23079596 Forsthoefel et al., 2012
X1 cell	SMED30027687	SMESG000038824.1	SmedASXL_011756	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
pharynx	SMED30027687	SMESG000038824.1	dd_Smed_v4_3002_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30027687	SMESG000038824.1	dd_Smed_v4_3002_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30027687	SMESG000038824.1	dd_Smed_v4_3002_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30027687	SMESG000038824.1	dd_Smed_v4_3002_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: Y57G11C.9 (pep chromosome:WBcel235:IV:14787168:14790843:1 gene:WBGene00013307.1 transcript:Y57G11C.9b.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y57G11C.9)

HSP 1 Score: 70.8626 bits (172), Expect = 1.614e-12
Identity = 31/93 (33.33%), Postives = 56/93 (60.22%), Query Frame = 3

Query:  102 RVNPKYVPPSRHAIFIRGFANDVDTHKIRDFFQEASKSNCGVDFTSYNDEQRKLSIALRFESHDIAKDMLLRFNNTEIFGYRVEVTWFKDLKK 380
            R+N   VP S+H IFIRG   D+ T +I+++  E        DF     ++ K+ +A+RFE+ D AK+ +  +++ E  G R +++WF+D+++
Sbjct:   39 RINETQVPQSKHTIFIRGLHGDISTEEIKEYIGEKV-GKISFDFVKVAQDKSKIFVAVRFENRDEAKEFMETYSDREFMGCRCDLSWFRDIRR 130

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BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: Y57G11C.9 (pep chromosome:WBcel235:IV:14787168:14790843:1 gene:WBGene00013307.1 transcript:Y57G11C.9a.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y57G11C.9)

HSP 1 Score: 70.8626 bits (172), Expect = 1.624e-12
Identity = 31/93 (33.33%), Postives = 56/93 (60.22%), Query Frame = 3

Query:  102 RVNPKYVPPSRHAIFIRGFANDVDTHKIRDFFQEASKSNCGVDFTSYNDEQRKLSIALRFESHDIAKDMLLRFNNTEIFGYRVEVTWFKDLKK 380
            R+N   VP S+H IFIRG   D+ T +I+++  E        DF     ++ K+ +A+RFE+ D AK+ +  +++ E  G R +++WF+D+++
Sbjct:   39 RINETQVPQSKHTIFIRGLHGDISTEEIKEYIGEKV-GKISFDFVKVAQDKSKIFVAVRFENRDEAKEFMETYSDREFMGCRCDLSWFRDIRR 130

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BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: pphln1 (periphilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1873])

HSP 1 Score: 53.5286 bits (127), Expect = 4.590e-7
Identity = 21/60 (35.00%), Postives = 39/60 (65.00%), Query Frame = 3

Query: 1509 KVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYILHL 1688
            K   IEK Y++D ET+  V+ +L+ K P L+  L++ LK+ LI++  +C++ ++ +I  L
Sbjct:  280 KAREIEKVYRQDCETFGMVVKMLVSKEPSLEKHLQNPLKENLIEIRERCLEDLQHFIAEL 339

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: pphln1 (periphilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1873])

HSP 1 Score: 53.5286 bits (127), Expect = 4.886e-7
Identity = 21/60 (35.00%), Postives = 39/60 (65.00%), Query Frame = 3

Query: 1509 KVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYILHL 1688
            K   IEK Y++D ET+  V+ +L+ K P L+  L++ LK+ LI++  +C++ ++ +I  L
Sbjct:  292 KAREIEKVYRQDCETFGMVVKMLVSKEPSLEKHLQNPLKENLIEIRERCLEDLQHFIAEL 351

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: pphln1 (periphilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1873])

HSP 1 Score: 53.5286 bits (127), Expect = 4.886e-7
Identity = 21/60 (35.00%), Postives = 39/60 (65.00%), Query Frame = 3

Query: 1509 KVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYILHL 1688
            K   IEK Y++D ET+  V+ +L+ K P L+  L++ LK+ LI++  +C++ ++ +I  L
Sbjct:  292 KAREIEKVYRQDCETFGMVVKMLVSKEPSLEKHLQNPLKENLIEIRERCLEDLQHFIAEL 351

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: pphln1 (periphilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1873])

HSP 1 Score: 50.8322 bits (120), Expect = 5.476e-7
Identity = 21/60 (35.00%), Postives = 39/60 (65.00%), Query Frame = 3

Query: 1509 KVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYILHL 1688
            K   IEK Y++D ET+  V+ +L+ K P L+  L++ LK+ LI++  +C++ ++ +I  L
Sbjct:   94 KAREIEKVYRQDCETFGMVVKMLVSKEPSLEKHLQNPLKENLIEIRERCLEDLQHFIAEL 153

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BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Pphln1 (periphilin 1 [Source:MGI Symbol;Acc:MGI:1917029])

HSP 1 Score: 49.2914 bits (116), Expect = 9.599e-6
Identity = 19/66 (28.79%), Postives = 41/66 (62.12%), Query Frame = 3

Query: 1509 KVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYILHLSDNNQN 1706
            K + IE+ Y++D ET+  V+ +LI K P L+  ++  L+  L ++G +C++ ++ +I    ++ Q+
Sbjct:  223 KTKEIEQVYRQDCETFGMVVKMLIEKDPSLEKSVQFALRQNLHEIGERCVEELKRFITEYDNSAQD 288

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Query: 1509 KVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYILHLSDNNQN 1706
            K + IE+ Y++D ET+  V+ +LI K P L+  ++  L+  L ++G +C++ ++ +I    ++ Q+
Sbjct:  223 KTKEIEQVYRQDCETFGMVVKMLIEKDPSLEKSVQFALRQNLHEIGERCVEELKRFITEYDNSAQD 288

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Query: 1509 KVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYILHLSDNNQN 1706
            K + IE+ Y++D ET+  V+ +LI K P L+  ++  L+  L ++G +C++ ++ +I    ++ Q+
Sbjct:  223 KTKEIEQVYRQDCETFGMVVKMLIEKDPSLEKSVQFALRQNLHEIGERCVEELKRFITEYDNSAQD 288

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BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Pphln1 (periphilin 1 [Source:MGI Symbol;Acc:MGI:1917029])

HSP 1 Score: 49.2914 bits (116), Expect = 9.989e-6
Identity = 19/66 (28.79%), Postives = 41/66 (62.12%), Query Frame = 3

Query: 1509 KVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYILHLSDNNQN 1706
            K + IE+ Y++D ET+  V+ +LI K P L+  ++  L+  L ++G +C++ ++ +I    ++ Q+
Sbjct:  242 KTKEIEQVYRQDCETFGMVVKMLIEKDPSLEKSVQFALRQNLHEIGERCVEELKRFITEYDNSAQD 307

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BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A4S2MHK0 (RRM domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_001232 PE=4 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.783e-26
Identity = 57/124 (45.97%), Postives = 84/124 (67.74%), Query Frame = 3

Query:   87 RNSFERVNPKYVPPSRHAIFIRGFANDVDTHKIRDFFQEASKSNCGVDFTSYNDEQRKLSIALRFESHDIAKDMLLRFNNTEIFGYRVEVTWFKDLKKARDRSRVLILSYQEHNLVRSSDKFGF 458
            R  F+RVNP+ V PSRH +FIRG     D  K++DFF E + S C VDF S ++++++LS+A+RF+SHD+AK++L ++NN  + G+ VE++WFKDLKKA    R  +   Q  +  RS  + GF
Sbjct:    4 RQQFDRVNPRNVAPSRHTLFIRGLPGATDVTKVKDFFSEETNSKCSVDFFSTSEDKKRLSVAIRFKSHDLAKEILAKYNNKHLMGFPVELSWFKDLKKA----RAKMFEEQRQSGGRSFQRQGF 123

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BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A5K3FIE9 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.839e-26
Identity = 56/117 (47.86%), Postives = 79/117 (67.52%), Query Frame = 3

Query:   87 RNSFERVNPKYVPPSRHAIFIRGFANDVDTHKIRDFFQEASKSNCGVDFTSYNDEQRKLSIALRFESHDIAKDMLLRFNNTEIFGYRVEVTWFKDLKKARDRSRVLILSYQEHNLVR 437
            R   +RVNP+YVPPSRH IFIRG     +   +++ F E SKS C V+F S ++++ + S+A+RF+SH+ A++ML ++N  E+ G+ VEVTWFKDLKKAR R    +   Q HN  R
Sbjct:    5 RQPMDRVNPRYVPPSRHTIFIRGLPGSTNVDSVKNHFSEESKSKCTVEFFSTSEDKVRFSVAIRFKSHETAREMLEKYNGKELMGHPVEVTWFKDLKKARAR----VYEEQRHNRFR 117

[Close]

BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A4S2MFS8 (RRM domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_001232 PE=4 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.010e-26
Identity = 57/124 (45.97%), Postives = 84/124 (67.74%), Query Frame = 3

Query:   87 RNSFERVNPKYVPPSRHAIFIRGFANDVDTHKIRDFFQEASKSNCGVDFTSYNDEQRKLSIALRFESHDIAKDMLLRFNNTEIFGYRVEVTWFKDLKKARDRSRVLILSYQEHNLVRSSDKFGF 458
            R  F+RVNP+ V PSRH +FIRG     D  K++DFF E + S C VDF S ++++++LS+A+RF+SHD+AK++L ++NN  + G+ VE++WFKDLKKA    R  +   Q  +  RS  + GF
Sbjct:    4 RQQFDRVNPRNVAPSRHTLFIRGLPGATDVTKVKDFFSEETNSKCSVDFFSTSEDKKRLSVAIRFKSHDLAKEILAKYNNKHLMGFPVELSWFKDLKKA----RAKMFEEQRQSGGRSFQRQGF 123

[Close]

BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A4S2MBI5 (RRM domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_001232 PE=4 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.916e-26
Identity = 57/124 (45.97%), Postives = 84/124 (67.74%), Query Frame = 3

Query:   87 RNSFERVNPKYVPPSRHAIFIRGFANDVDTHKIRDFFQEASKSNCGVDFTSYNDEQRKLSIALRFESHDIAKDMLLRFNNTEIFGYRVEVTWFKDLKKARDRSRVLILSYQEHNLVRSSDKFGF 458
            R  F+RVNP+ V PSRH +FIRG     D  K++DFF E + S C VDF S ++++++LS+A+RF+SHD+AK++L ++NN  + G+ VE++WFKDLKKA    R  +   Q  +  RS  + GF
Sbjct:    4 RQQFDRVNPRNVAPSRHTLFIRGLPGATDVTKVKDFFSEETNSKCSVDFFSTSEDKKRLSVAIRFKSHDLAKEILAKYNNKHLMGFPVELSWFKDLKKA----RAKMFEEQRQSGGRSFQRQGF 123

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BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A5J4N6Y9 (RRM domain-containing protein (Fragment) OS=Paragonimus westermani OX=34504 GN=DEA37_0012066 PE=4 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 8.781e-26
Identity = 51/100 (51.00%), Postives = 75/100 (75.00%), Query Frame = 3

Query:   87 RNSFERVNPKYVPPSRHAIFIRGFANDVDTHKIRDFFQEASKSNCGVDFTSYNDEQRKLSIALRFESHDIAKDMLLRFNNTEIFGYRVEVTWFKDLKKAR 386
            R  F++VNP+ V PSRH +FIRG     D  K+++FF   + S C VDF S +D++++LS+A+RF+SHD+A++ML ++NN  + G+ VE+TWFKDLKKAR
Sbjct:    4 RQPFDKVNPRNVVPSRHTVFIRGLPGPTDVTKVKEFFSTETGSKCSVDFFSTSDDKKRLSVAIRFKSHDVAREMLTKYNNKLLMGFPVELTWFKDLKKAR 103

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BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000015142.2 (periphilin-1-like [Source:NCBI gene;Acc:103022647])

HSP 1 Score: 55.0694 bits (131), Expect = 1.178e-7
Identity = 20/53 (37.74%), Postives = 39/53 (73.58%), Query Frame = 3

Query: 1521 IEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYI 1679
            IEK Y++D ET+  V+ +L+ K P L+ +LE+ LK+ L+++  +C++ +R++I
Sbjct:  274 IEKLYRQDCETFGMVVKMLVAKQPTLEKQLETALKENLVEIKERCLEDLRQFI 326

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BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: pphln1 (periphilin 1 [Source:NCBI gene;Acc:103022650])

HSP 1 Score: 52.7582 bits (125), Expect = 6.919e-7
Identity = 28/107 (26.17%), Postives = 53/107 (49.53%), Query Frame = 3

Query: 1368 LNNWKQTASDSDDFLSKNSQNIKSKTKISVSAXXXXXXXXXXXXXXMKVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYILHL 1688
            L   ++ ++ SD+F  + SQ I +K +                        IEK Y++D ET+  V+ +L+ K P L+  L++ LK+ L ++  +C++ +R +I  L
Sbjct:  237 LPATEEVSTVSDEFHERRSQAIAAKAR-----------------------EIEKVYRQDCETFGMVVKMLVAKEPSLEKHLQTPLKENLSEIRERCLEDLRHFISEL 320

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: pphln1 (periphilin 1 [Source:NCBI gene;Acc:103022650])

HSP 1 Score: 52.7582 bits (125), Expect = 7.480e-7
Identity = 28/107 (26.17%), Postives = 53/107 (49.53%), Query Frame = 3

Query: 1368 LNNWKQTASDSDDFLSKNSQNIKSKTKISVSAXXXXXXXXXXXXXXMKVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYILHL 1688
            L   ++ ++ SD+F  + SQ I +K +                        IEK Y++D ET+  V+ +L+ K P L+  L++ LK+ L ++  +C++ +R +I  L
Sbjct:  256 LPATEEVSTVSDEFHERRSQAIAAKAR-----------------------EIEKVYRQDCETFGMVVKMLVAKEPSLEKHLQTPLKENLSEIRERCLEDLRHFISEL 339

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: pphln1 (periphilin 1 [Source:NCBI gene;Acc:103022650])

HSP 1 Score: 51.2174 bits (121), Expect = 2.019e-6
Identity = 28/107 (26.17%), Postives = 53/107 (49.53%), Query Frame = 3

Query: 1368 LNNWKQTASDSDDFLSKNSQNIKSKTKISVSAXXXXXXXXXXXXXXMKVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYILHL 1688
            L   ++ ++ SD+F  + SQ I +K +                        IEK Y++D ET+  V+ +L+ K P L+  L++ LK+ L ++  +C++ +R +I  L
Sbjct:  243 LPATEEVSTVSDEFHERRSQAIAAKAR-----------------------EIEKVYRQDCETFGMVVKMLVAKEPSLEKHLQTPLKENLSEIRERCLEDLRHFISEL 326

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000035861.1 (periphilin-1 [Source:NCBI gene;Acc:101159097])

HSP 1 Score: 51.6026 bits (122), Expect = 1.549e-6
Identity = 23/60 (38.33%), Postives = 38/60 (63.33%), Query Frame = 3

Query: 1509 KVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYILHL 1688
            K   IEK YK+D ET+ +V+ +LI K P L+  LE+ L   L+++   C+D+++ +I  L
Sbjct:  254 KAVEIEKHYKQDCETFRTVVKMLIDKEPGLENSLEAPLAKNLVEIKQHCLDALKGFISEL 313

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000004039.2 (periphilin-1 [Source:NCBI gene;Acc:101159097])

HSP 1 Score: 51.6026 bits (122), Expect = 1.655e-6
Identity = 23/60 (38.33%), Postives = 38/60 (63.33%), Query Frame = 3

Query: 1509 KVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYILHL 1688
            K   IEK YK+D ET+ +V+ +LI K P L+  LE+ L   L+++   C+D+++ +I  L
Sbjct:  257 KAVEIEKHYKQDCETFRTVVKMLIDKEPGLENSLEAPLAKNLVEIKQHCLDALKGFISEL 316

[Close]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000038824.1 (SMESG000038824.1)

HSP 1 Score: 522.702 bits (1345), Expect = 0.000e+0
Identity = 322/339 (94.99%), Postives = 324/339 (95.58%), Query Frame = 3

Query:  699 VLDERRVPFDEHRMNFKNNRFDYERRDNREWSDARKKFSQNNNKHSKSVERSDVNSEASYGXXXXXXXXXXXXXXXXXXXXXXXXXGSDSRSILISKIEGDIRSKSPSVREVKDKNDLVAMSDKPAAYNVDLDENFNENLPQIKAPLQKEESISSIPDNYKVDNVTNHKHDSEDXXXXXXXXXXXXVEHSGSADSFGESSKIAKYNPATDQNENLQFSAIAGDLNNWKQTASDSDDFLSKNSQNIKSKTKISVSAXXXXXXXXXXXXXXMKVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYILHLSDNNQNHLE 1715
            +LDERRVPFDEHRMNFKNNRFDYERRDNREWSDARKKFSQNNNKHSKSVERSDVNSEASYGHKRKHSSEYEKSRSHSSNRSEKSYSGSDSRSILISKIEGDIR               +AMSDKPAAYNVDLDENFNENLPQIKAPLQKEESISSIPDNYKVDNVTNHKHDSEDKKKKKKKRKRRRVEHSGSADSFGESSKIAKYNPATDQNENLQFSAIAGDLNNWKQTASDSDDFLSKNSQNIKSKTKISVSASEKLNNEKSLKLLKMKVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYILHLSDNNQNHLE
Sbjct:  120 MLDERRVPFDEHRMNFKNNRFDYERRDNREWSDARKKFSQNNNKHSKSVERSDVNSEASYGHKRKHSSEYEKSRSHSSNRSEKSYSGSDSRSILISKIEGDIR---------------IAMSDKPAAYNVDLDENFNENLPQIKAPLQKEESISSIPDNYKVDNVTNHKHDSEDKKKKKKKRKRRRVEHSGSADSFGESSKIAKYNPATDQNENLQFSAIAGDLNNWKQTASDSDDFLSKNSQNIKSKTKISVSASEKLNNEKSLKLLKMKVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYILHLSDNNQNHLE 443

HSP 2 Score: 265.774 bits (678), Expect = 3.385e-81
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 3

Query:   36 MSGPVARKFFGGRNAPNRNSFERVNPKYVPPSRHAIFIRGFANDVDTHKIRDFFQEASKSNCGVDFTSYNDEQRKLSIALRFESHDIAKDMLLRFNNTEIFGYRVEVTWFKDLKKARDR 392
            MSGPVARKFFGGRNAPNRNSFERVNPKYVPPSRHAIFIRGFANDVDTHKIRDFFQEASKSNCGVDFTSYNDEQRKLSIALRFESHDIAKDMLLRFNNTEIFGYRVEVTWFKDLKKARDR
Sbjct:    1 MSGPVARKFFGGRNAPNRNSFERVNPKYVPPSRHAIFIRGFANDVDTHKIRDFFQEASKSNCGVDFTSYNDEQRKLSIALRFESHDIAKDMLLRFNNTEIFGYRVEVTWFKDLKKARDR 119

[Close]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000038824.1 (SMESG000038824.1)

HSP 1 Score: 520.005 bits (1338), Expect = 1.066e-179
Identity = 321/339 (94.69%), Postives = 323/339 (95.28%), Query Frame = 3

Query:  699 VLDERRVPFDEHRMNFKNNRFDYERRDNREWSDARKKFSQNNNKHSKSVERSDVNSEASYGXXXXXXXXXXXXXXXXXXXXXXXXXGSDSRSILISKIEGDIRSKSPSVREVKDKNDLVAMSDKPAAYNVDLDENFNENLPQIKAPLQKEESISSIPDNYKVDNVTNHKHDSEDXXXXXXXXXXXXVEHSGSADSFGESSKIAKYNPATDQNENLQFSAIAGDLNNWKQTASDSDDFLSKNSQNIKSKTKISVSAXXXXXXXXXXXXXXMKVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYILHLSDNNQNHLE 1715
            +LDERRVPFDEHRMNFKNNRFDYERRDNREWSDARKKFSQNNNKHSKSVERSDVNSEASYGHKRKHSSEYEKSRSHSSNRSEKSYSGSDSRSILISKIEGDIR+                MSDKPAAYNVDLDENFNENLPQIKAPLQKEESISSIPDNYKVDNVTNHKHDSEDKKKKKKKRKRRRVEHSGSADSFGESSKIAKYNPATDQNENLQFSAIAGDLNNWKQTASDSDDFLSKNSQNIKSKTKISVSASEKLNNEKSLKLLKMKVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYILHLSDNNQNHLE
Sbjct:  120 MLDERRVPFDEHRMNFKNNRFDYERRDNREWSDARKKFSQNNNKHSKSVERSDVNSEASYGHKRKHSSEYEKSRSHSSNRSEKSYSGSDSRSILISKIEGDIRT----------------MSDKPAAYNVDLDENFNENLPQIKAPLQKEESISSIPDNYKVDNVTNHKHDSEDKKKKKKKRKRRRVEHSGSADSFGESSKIAKYNPATDQNENLQFSAIAGDLNNWKQTASDSDDFLSKNSQNIKSKTKISVSASEKLNNEKSLKLLKMKVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYILHLSDNNQNHLE 442

HSP 2 Score: 265.774 bits (678), Expect = 3.223e-81
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 3

Query:   36 MSGPVARKFFGGRNAPNRNSFERVNPKYVPPSRHAIFIRGFANDVDTHKIRDFFQEASKSNCGVDFTSYNDEQRKLSIALRFESHDIAKDMLLRFNNTEIFGYRVEVTWFKDLKKARDR 392
            MSGPVARKFFGGRNAPNRNSFERVNPKYVPPSRHAIFIRGFANDVDTHKIRDFFQEASKSNCGVDFTSYNDEQRKLSIALRFESHDIAKDMLLRFNNTEIFGYRVEVTWFKDLKKARDR
Sbjct:    1 MSGPVARKFFGGRNAPNRNSFERVNPKYVPPSRHAIFIRGFANDVDTHKIRDFFQEASKSNCGVDFTSYNDEQRKLSIALRFESHDIAKDMLLRFNNTEIFGYRVEVTWFKDLKKARDR 119

[Close]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000038824.1 (SMESG000038824.1)

HSP 1 Score: 431.795 bits (1109), Expect = 5.833e-146
Identity = 278/295 (94.24%), Postives = 280/295 (94.92%), Query Frame = 3

Query:  699 VLDERRVPFDEHRMNFKNNRFDYERRDNREWSDARKKFSQNNNKHSKSVERSDVNSEASYGXXXXXXXXXXXXXXXXXXXXXXXXXGSDSRSILISKIEGDIRSKSPSVREVKDKNDLVAMSDKPAAYNVDLDENFNENLPQIKAPLQKEESISSIPDNYKVDNVTNHKHDSEDXXXXXXXXXXXXVEHSGSADSFGESSKIAKYNPATDQNENLQFSAIAGDLNNWKQTASDSDDFLSKNSQNIKSKTKISVSAXXXXXXXXXXXXXXMKVENIEKAYKKDSETYSSVISVLIR 1583
            +LDERRVPFDEHRMNFKNNRFDYERRDNREWSDARKKFSQNNNKHSKSVERSDVNSEASYGHKRKHSSEYEKSRSHSSNRSEKSYSGSDSRSILISKIEGDIR               +AMSDKPAAYNVDLDENFNENLPQIKAPLQKEESISSIPDNYKVDNVTNHKHDSEDKKKKKKKRKRRRVEHSGSADSFGESSKIAKYNPATDQNENLQFSAIAGDLNNWKQTASDSDDFLSKNSQNIKSKTKISVSASEKLNNEKSLKLLKMKVENIEKAYKKDSETYSSVISVLIR
Sbjct:  120 MLDERRVPFDEHRMNFKNNRFDYERRDNREWSDARKKFSQNNNKHSKSVERSDVNSEASYGHKRKHSSEYEKSRSHSSNRSEKSYSGSDSRSILISKIEGDIR---------------IAMSDKPAAYNVDLDENFNENLPQIKAPLQKEESISSIPDNYKVDNVTNHKHDSEDKKKKKKKRKRRRVEHSGSADSFGESSKIAKYNPATDQNENLQFSAIAGDLNNWKQTASDSDDFLSKNSQNIKSKTKISVSASEKLNNEKSLKLLKMKVENIEKAYKKDSETYSSVISVLIR 399

HSP 2 Score: 265.003 bits (676), Expect = 1.485e-81
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 3

Query:   36 MSGPVARKFFGGRNAPNRNSFERVNPKYVPPSRHAIFIRGFANDVDTHKIRDFFQEASKSNCGVDFTSYNDEQRKLSIALRFESHDIAKDMLLRFNNTEIFGYRVEVTWFKDLKKARDR 392
            MSGPVARKFFGGRNAPNRNSFERVNPKYVPPSRHAIFIRGFANDVDTHKIRDFFQEASKSNCGVDFTSYNDEQRKLSIALRFESHDIAKDMLLRFNNTEIFGYRVEVTWFKDLKKARDR
Sbjct:    1 MSGPVARKFFGGRNAPNRNSFERVNPKYVPPSRHAIFIRGFANDVDTHKIRDFFQEASKSNCGVDFTSYNDEQRKLSIALRFESHDIAKDMLLRFNNTEIFGYRVEVTWFKDLKKARDR 119

[Close]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000002926.1 (SMESG000002926.1)

HSP 1 Score: 120.168 bits (300), Expect = 1.983e-28
Identity = 53/99 (53.54%), Postives = 77/99 (77.78%), Query Frame = 3

Query:   90 NSFERVNPKYVPPSRHAIFIRGFANDVDTHKIRDFFQEASKSNCGVDFTSYNDEQRKLSIALRFESHDIAKDMLLRFNNTEIFGYRVEVTWFKDLKKAR 386
            NS +RV+PK V PSRH+IFIRGF +++    +R FF+  SK NC +DF SY+++++KL IALRFESH+ A D++  F++ E+ G+ +EV+WFKDL+KAR
Sbjct:    9 NSSDRVDPKMVTPSRHSIFIRGFPSNMSMENVRSFFKTESKENCKIDFFSYSEDRKKLFIALRFESHEKAVDIIENFDSKEVLGHSIEVSWFKDLRKAR 107

HSP 2 Score: 54.6842 bits (130), Expect = 1.793e-7
Identity = 26/68 (38.24%), Postives = 44/68 (64.71%), Query Frame = 3

Query: 1509 KVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYILHLSDNNQNHL 1712
            K E++EK YKKD ET +SV  ++I K+P ++  +  ILK I  D+G + ++ +R YI +L++ N   +
Sbjct:  435 KKESLEKTYKKDCETVASVAKLMISKNPTIEESILIILKSIFTDIGEKYIEELRSYINYLANINSQQI 502

[Close]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000002926.1 (SMESG000002926.1)

HSP 1 Score: 108.612 bits (270), Expect = 1.128e-24
Identity = 47/89 (52.81%), Postives = 69/89 (77.53%), Query Frame = 3

Query:  120 VPPSRHAIFIRGFANDVDTHKIRDFFQEASKSNCGVDFTSYNDEQRKLSIALRFESHDIAKDMLLRFNNTEIFGYRVEVTWFKDLKKAR 386
            V PSRH+IFIRGF +++    +R FF+  SK NC +DF SY+++++KL IALRFESH+ A D++  F++ E+ G+ +EV+WFKDL+KAR
Sbjct:    2 VTPSRHSIFIRGFPSNMSMENVRSFFKTESKENCKIDFFSYSEDRKKLFIALRFESHEKAVDIIENFDSKEVLGHSIEVSWFKDLRKAR 90

HSP 2 Score: 54.6842 bits (130), Expect = 1.809e-7
Identity = 26/68 (38.24%), Postives = 44/68 (64.71%), Query Frame = 3

Query: 1509 KVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILIDVGNQCMDSMREYILHLSDNNQNHL 1712
            K E++EK YKKD ET +SV  ++I K+P ++  +  ILK I  D+G + ++ +R YI +L++ N   +
Sbjct:  418 KKESLEKTYKKDCETVASVAKLMISKNPTIEESILIILKSIFTDIGEKYIEELRSYINYLANINSQQI 485

The following BLAST results are available for this feature:

BLAST of RRM domain-containing protein vs. Ensembl Human
BLAST of RRM domain-containing protein vs. Ensembl Celegans
BLAST of RRM domain-containing protein vs. Ensembl Fly
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
BLAST of RRM domain-containing protein vs. Ensembl Mouse
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
BLAST of RRM domain-containing protein vs. TrEMBL
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
BLAST of RRM domain-containing protein vs. Ensembl Yeast
BLAST of RRM domain-containing protein vs. Ensembl Nematostella
BLAST of RRM domain-containing protein vs. Ensembl Medaka
BLAST of RRM domain-containing protein vs. Planmine SMEST

BLAST of RRM domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of RRM domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2


Match Name	E-value	Identity	Description
Y57G11C.9	1.614e-12	33.33	pep chromosome:WBcel235:IV:14787168:14790843:1 gen...	[more]
Y57G11C.9	1.624e-12	33.33	pep chromosome:WBcel235:IV:14787168:14790843:1 gen...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 4


Match Name	E-value	Identity	Description
pphln1	4.590e-7	35.00	periphilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1873...	[more]
pphln1	4.886e-7	35.00	periphilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1873...	[more]
pphln1	4.886e-7	35.00	periphilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1873...	[more]
pphln1	5.476e-7	35.00	periphilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1873...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of RRM domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4


Match Name	E-value	Identity	Description
Pphln1	9.599e-6	28.79	periphilin 1 [Source:MGI Symbol;Acc:MGI:1917029]	[more]
Pphln1	9.599e-6	28.79	periphilin 1 [Source:MGI Symbol;Acc:MGI:1917029]	[more]
Pphln1	9.599e-6	28.79	periphilin 1 [Source:MGI Symbol;Acc:MGI:1917029]	[more]
Pphln1	9.989e-6	28.79	periphilin 1 [Source:MGI Symbol;Acc:MGI:1917029]	[more]

BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of RRM domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A4S2MHK0	3.783e-26	45.97	RRM domain-containing protein OS=Opisthorchis feli...	[more]
A0A5K3FIE9	3.839e-26	47.86	Uncharacterized protein OS=Mesocestoides corti OX=...	[more]
A0A4S2MFS8	4.010e-26	45.97	RRM domain-containing protein OS=Opisthorchis feli...	[more]
A0A4S2MBI5	4.916e-26	45.97	RRM domain-containing protein OS=Opisthorchis feli...	[more]
A0A5J4N6Y9	8.781e-26	51.00	RRM domain-containing protein (Fragment) OS=Parago...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4


Match Name	E-value	Identity	Description
ENSAMXT00000015142.2	1.178e-7	37.74	periphilin-1-like [Source:NCBI gene;Acc:103022647]	[more]
pphln1	6.919e-7	26.17	periphilin 1 [Source:NCBI gene;Acc:103022650]	[more]
pphln1	7.480e-7	26.17	periphilin 1 [Source:NCBI gene;Acc:103022650]	[more]
pphln1	2.019e-6	26.17	periphilin 1 [Source:NCBI gene;Acc:103022650]	[more]

BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of RRM domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of RRM domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2


Match Name	E-value	Identity	Description
ENSORLT00000035861.1	1.549e-6	38.33	periphilin-1 [Source:NCBI gene;Acc:101159097]	[more]
ENSORLT00000004039.2	1.655e-6	38.33	periphilin-1 [Source:NCBI gene;Acc:101159097]	[more]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000038824.1	3.385e-81	94.99	SMESG000038824.1	[more]
SMESG000038824.1	1.066e-179	94.69	SMESG000038824.1	[more]
SMESG000038824.1	5.833e-146	94.24	SMESG000038824.1	[more]
SMESG000002926.1	1.983e-28	53.54	SMESG000002926.1	[more]
SMESG000002926.1	1.128e-24	52.81	SMESG000002926.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence
protein sequence

transcript sequence

>SMED30027687 ID=SMED30027687|Name=RRM domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2110bp
GAAAATTATTCTATTTATTAAAATTAAATTATATCATGTCGGGCCCCGTT
GCACGAAAATTTTTCGGGGGTAGGAATGCTCCAAATAGAAATTCATTTGA
AAGAGTTAATCCTAAATATGTTCCACCTAGCAGACATGCAATTTTTATTC
GAGGATTTGCTAATGATGTAGATACGCATAAAATCAGAGATTTTTTTCAA
GAAGCTTCTAAAAGCAATTGTGGTGTTGATTTTACTAGTTATAATGATGA
ACAACGTAAATTAAGCATTGCATTACGATTTGAATCACATGATATTGCTA
AAGATATGTTATTGAGATTCAATAATACTGAAATATTTGGATATCGAGTT
GAAGTGACATGGTTTAAAGATTTGAAGAAAGCTCGTGATAGAAGTAGAGT
GTTAATATTATCTTATCAAGAACACAATTTAGTTAGATCCAGTGATAAAT
TTGGTTTTTTCAATGTTTAAAGTTCTTATTTGGCAATATTTCAAAATTTA
ATTAATGAAAAATAATTTCAAAAACTTTTTGAAAATCATATTTTGTTTCA
ACATATAATTTGGGGTAGTCTAACTAAATTATTATGCGATATCATTTTAT
TATTGAAATTATTTATAATTTTCTAAATTGTTCACTGTAAGACTATTTTC
TTGATAAGGAAGATCAATGCATAACATTTTATAATTAATAATATTACAGT
GCTGGATGAAAGAAGAGTTCCATTTGATGAGCATCGAATGAATTTCAAAA
ATAATCGTTTTGACTATGAAAGGCGTGACAATCGCGAATGGTCTGATGCA
CGTAAAAAATTTTCACAGAATAATAACAAACACAGTAAATCAGTGGAACG
AAGTGATGTTAATAGTGAAGCTTCGTATGGTCATAAACGAAAACATTCCA
GTGAGTATGAGAAAAGCAGATCTCATTCGTCAAATCGATCGGAGAAATCT
TATTCAGGATCAGATTCTCGTTCAATTTTAATAAGTAAAATAGAGGGAGA
TATTCGCAGTAAGAGTCCATCTGTTAGAGAAGTGAAAGATAAAAACGATC
TAGTAGCAATGTCAGACAAACCCGCCGCATATAACGTGGATTTAGATGAA
AATTTCAATGAAAATCTACCACAAATTAAAGCTCCTCTTCAGAAAGAAGA
GAGTATTTCTTCTATCCCAGACAATTACAAGGTTGATAATGTAACTAATC
ATAAACATGATTCCGAAGATAAAAAGAAAAAAAAGAAAAAGCGAAAGCGT
CGACGTGTTGAGCATAGTGGTAGCGCGGATTCCTTTGGAGAATCATCTAA
GATAGCCAAATATAATCCAGCTACTGATCAGAATGAAAATCTTCAGTTTT
CAGCCATTGCCGGGGATTTAAATAATTGGAAACAAACCGCTTCTGACTCT
GATGACTTCCTCAGCAAAAATAGTCAAAATATAAAATCGAAAACAAAAAT
CTCTGTATCTGCATCAGAAAAGTTAAATAATGAAAAAAGTCTCAAACTTT
TAAAAATGAAAGTTGAAAATATTGAAAAAGCTTATAAAAAGGACAGTGAA
ACGTATTCTAGTGTTATCAGTGTTTTAATTCGAAAATCGCCAGAATTAAA
AGTGAAATTAGAATCAATTTTGAAAGATATATTAATAGATGTTGGGAATC
AATGCATGGATTCAATGCGCGAATATATACTGCATTTATCCGATAACAAT
CAAAATCACCTTGAACCGAGCGCTTCACCTGCATCGAGCATGTAAAATTC
CTGTTAATAAATATATATTAGTTGTTTTTGTCTATTTTATATACCAATTC
TCCAAATAAGATGTTTTAGAACATTTTGTTAGAAAATCAATTGTGAGAAA
GTTCAATATTATTGAACCGTGTCATTAAAGATGCGTGTGGATGAAATCCA
AGCTTGCAATCAGTTTCACCCTACATATTGATTATATAGCACTGGCTAGA
AGAAACCCGGTTTGGGACAGTGCAAGATAGATAATTCGAAATGTTTTTAT
CGATTTTAGTGGATTTATAGTTAAAAGAAAAATTAATTGACTTCTTTATA
AATCAATACAAAAAAATAAGTGTTAAAAAATGAATATGTTAAATAAATGC
TAAAAAGAAG

protein sequence of SMED30027687-orf-1

>SMED30027687-orf-1 ID=SMED30027687-orf-1|Name=SMED30027687-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=336bp
MNFKNNRFDYERRDNREWSDARKKFSQNNNKHSKSVERSDVNSEASYGHK
RKHSSEYEKSRSHSSNRSEKSYSGSDSRSILISKIEGDIRSKSPSVREVK
DKNDLVAMSDKPAAYNVDLDENFNENLPQIKAPLQKEESISSIPDNYKVD
NVTNHKHDSEDKKKKKKKRKRRRVEHSGSADSFGESSKIAKYNPATDQNE
NLQFSAIAGDLNNWKQTASDSDDFLSKNSQNIKSKTKISVSASEKLNNEK
SLKLLKMKVENIEKAYKKDSETYSSVISVLIRKSPELKVKLESILKDILI
DVGNQCMDSMREYILHLSDNNQNHLEPSASPASSM*

protein sequence of SMED30027687-orf-2

>SMED30027687-orf-2 ID=SMED30027687-orf-2|Name=SMED30027687-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=156bp
KLFYLLKLNYIMSGPVARKFFGGRNAPNRNSFERVNPKYVPPSRHAIFIR
GFANDVDTHKIRDFFQEASKSNCGVDFTSYNDEQRKLSIALRFESHDIAK
DMLLRFNNTEIFGYRVEVTWFKDLKKARDRSRVLILSYQEHNLVRSSDKF
GFFNV*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **molecular function**
Term	Definition
GO:0003723	RNA binding
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000016	pharynx
PLANA:0000070	intestinal phagocyte
PLANA:0000099	neuron
PLANA:0002109	X1 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR028851	Pphln1
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **biological process**
Term	Definition
GO:0045892	negative regulation of transcription, DNA-templated

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..107
IPR028851	Periphilin-1	PANTHER	PTHR15836	PERIPHILIN 1	coord: 219..323

Main menu

RRM domain-containing protein

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 13

Owlery

blazegraph-runner