Ig-like domain-containing protein

Overview
NameIg-like domain-containing protein
Smed IDSMED30027614
Length (bp)1597
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Ig-like domain-containing protein (SMED30027614) t-SNE clustered cells

Violin plots show distribution of expression levels for Ig-like domain-containing protein (SMED30027614) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Ig-like domain-containing protein (SMED30027614) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Ig-like domain-containing protein (SMED30027614) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30027614

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30027614SMESG000027905.1 SmedASXL_011318SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30027614SMESG000027905.1 dd_Smed_v4_21969_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30027614SMESG000027905.1 dd_Smed_v4_21969_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30027614SMESG000027905.1 dd_Smed_v4_21969_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30027614SMESG000027905.1 dd_Smed_v6_21969_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Ig-like domain-containing protein vs. Ensembl Celegans
Match: unc-89 (Muscle M-line assembly protein unc-89 [Source:UniProtKB/Swiss-Prot;Acc:O01761])

HSP 1 Score: 52.7582 bits (125), Expect = 7.809e-7
Identity = 63/278 (22.66%), Postives = 119/278 (42.81%), Query Frame = 3 
Query:  192 HIMIAMSHSEKVCHDMK-----LCKVSFVSVKEGEDIELKCSISPAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNLKIKNCQKSDQGMYYCSDSISNEIMLYYNVSVEKHDQPISTDAEKVFRTGAPGKMKIKGPNVAFV-GEPVHIQCRIDLAHVELPPYPFSSFRWFHNGKIQHSNSISDLTITQSWESTLILESEV-----IVKHVDTKHSGSWVCLYALDGSKFTQKNTATASIYLTVLGSPKSSSEDHYSNGNTNLKPKILK 992
            H+ +A+  +EK   D       + ++S +SV  G  I+L+C ++      + W+K+G   PL    +  + NE      +    + L+IKN    D+G Y C    +NE       S  + D  + +    V     P +  +K  +V    G+P+ ++C++D +       P     W+ +G I   +    ++++    +TL++ S V     I + + T  SG+     A D      K TAT        G+ +S+  D +   + N  PK+++
Sbjct: 4936 HVQMALGKTEKPKMDEGKPPKFILELSDMSVSLGNVIDLECKVTGLPNPSVKWSKDGG--PLIEDSRFEWSNE------ASKGVYQLRIKNATVHDEGTYRC--VATNENGSATTKSFVRMDDGLGSG---VVTASQPPRFTLKMGDVRTTEGQPLKLECKVDAS-------PLPEMVWYKDGAIVTPSDRIQISLSPDGVATLLIPSCVYDDDGIYRVIATNPSGT-----AQD------KGTATVKKLPRDSGARRSADRDVF---DANKAPKLME 5179
[Close]
BLAST of Ig-like domain-containing protein vs. Ensembl Celegans
Match: unc-89 (Muscle M-line assembly protein unc-89 [Source:UniProtKB/Swiss-Prot;Acc:O01761])

HSP 1 Score: 52.373 bits (124), Expect = 9.581e-7
Identity = 63/278 (22.66%), Postives = 119/278 (42.81%), Query Frame = 3 
Query:  192 HIMIAMSHSEKVCHDMK-----LCKVSFVSVKEGEDIELKCSISPAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNLKIKNCQKSDQGMYYCSDSISNEIMLYYNVSVEKHDQPISTDAEKVFRTGAPGKMKIKGPNVAFV-GEPVHIQCRIDLAHVELPPYPFSSFRWFHNGKIQHSNSISDLTITQSWESTLILESEV-----IVKHVDTKHSGSWVCLYALDGSKFTQKNTATASIYLTVLGSPKSSSEDHYSNGNTNLKPKILK 992
            H+ +A+  +EK   D       + ++S +SV  G  I+L+C ++      + W+K+G   PL    +  + NE      +    + L+IKN    D+G Y C    +NE       S  + D  + +    V     P +  +K  +V    G+P+ ++C++D +       P     W+ +G I   +    ++++    +TL++ S V     I + + T  SG+     A D      K TAT        G+ +S+  D +   + N  PK+++
Sbjct: 4856 HVQMALGKTEKPKMDEGKPPKFILELSDMSVSLGNVIDLECKVTGLPNPSVKWSKDGG--PLIEDSRFEWSNE------ASKGVYQLRIKNATVHDEGTYRC--VATNENGSATTKSFVRMDDGLGSG---VVTASQPPRFTLKMGDVRTTEGQPLKLECKVDAS-------PLPEMVWYKDGAIVTPSDRIQISLSPDGVATLLIPSCVYDDDGIYRVIATNPSGT-----AQD------KGTATVKKLPRDSGARRSADRDVF---DANKAPKLME 5099
[Close]
BLAST of Ig-like domain-containing protein vs. Ensembl Celegans
Match: unc-89 (Muscle M-line assembly protein unc-89 [Source:UniProtKB/Swiss-Prot;Acc:O01761])

HSP 1 Score: 52.373 bits (124), Expect = 9.769e-7
Identity = 63/278 (22.66%), Postives = 119/278 (42.81%), Query Frame = 3 
Query:  192 HIMIAMSHSEKVCHDMK-----LCKVSFVSVKEGEDIELKCSISPAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNLKIKNCQKSDQGMYYCSDSISNEIMLYYNVSVEKHDQPISTDAEKVFRTGAPGKMKIKGPNVAFV-GEPVHIQCRIDLAHVELPPYPFSSFRWFHNGKIQHSNSISDLTITQSWESTLILESEV-----IVKHVDTKHSGSWVCLYALDGSKFTQKNTATASIYLTVLGSPKSSSEDHYSNGNTNLKPKILK 992
            H+ +A+  +EK   D       + ++S +SV  G  I+L+C ++      + W+K+G   PL    +  + NE      +    + L+IKN    D+G Y C    +NE       S  + D  + +    V     P +  +K  +V    G+P+ ++C++D +       P     W+ +G I   +    ++++    +TL++ S V     I + + T  SG+     A D      K TAT        G+ +S+  D +   + N  PK+++
Sbjct: 5554 HVQMALGKTEKPKMDEGKPPKFILELSDMSVSLGNVIDLECKVTGLPNPSVKWSKDGG--PLIEDSRFEWSNE------ASKGVYQLRIKNATVHDEGTYRC--VATNENGSATTKSFVRMDDGLGSG---VVTASQPPRFTLKMGDVRTTEGQPLKLECKVDAS-------PLPEMVWYKDGAIVTPSDRIQISLSPDGVATLLIPSCVYDDDGIYRVIATNPSGT-----AQD------KGTATVKKLPRDSGARRSADRDVF---DANKAPKLME 5797
[Close]
BLAST of Ig-like domain-containing protein vs. Ensembl Celegans
Match: unc-89 (Muscle M-line assembly protein unc-89 [Source:UniProtKB/Swiss-Prot;Acc:O01761])

HSP 1 Score: 52.373 bits (124), Expect = 9.835e-7
Identity = 63/278 (22.66%), Postives = 119/278 (42.81%), Query Frame = 3 
Query:  192 HIMIAMSHSEKVCHDMK-----LCKVSFVSVKEGEDIELKCSISPAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNLKIKNCQKSDQGMYYCSDSISNEIMLYYNVSVEKHDQPISTDAEKVFRTGAPGKMKIKGPNVAFV-GEPVHIQCRIDLAHVELPPYPFSSFRWFHNGKIQHSNSISDLTITQSWESTLILESEV-----IVKHVDTKHSGSWVCLYALDGSKFTQKNTATASIYLTVLGSPKSSSEDHYSNGNTNLKPKILK 992
            H+ +A+  +EK   D       + ++S +SV  G  I+L+C ++      + W+K+G   PL    +  + NE      +    + L+IKN    D+G Y C    +NE       S  + D  + +    V     P +  +K  +V    G+P+ ++C++D +       P     W+ +G I   +    ++++    +TL++ S V     I + + T  SG+     A D      K TAT        G+ +S+  D +   + N  PK+++
Sbjct: 5003 HVQMALGKTEKPKMDEGKPPKFILELSDMSVSLGNVIDLECKVTGLPNPSVKWSKDGG--PLIEDSRFEWSNE------ASKGVYQLRIKNATVHDEGTYRC--VATNENGSATTKSFVRMDDGLGSG---VVTASQPPRFTLKMGDVRTTEGQPLKLECKVDAS-------PLPEMVWYKDGAIVTPSDRIQISLSPDGVATLLIPSCVYDDDGIYRVIATNPSGT-----AQD------KGTATVKKLPRDSGARRSADRDVF---DANKAPKLME 5246
[Close]
BLAST of Ig-like domain-containing protein vs. Ensembl Celegans
Match: unc-89 (Muscle M-line assembly protein unc-89 [Source:UniProtKB/Swiss-Prot;Acc:O01761])

HSP 1 Score: 52.373 bits (124), Expect = 9.854e-7
Identity = 63/278 (22.66%), Postives = 119/278 (42.81%), Query Frame = 3 
Query:  192 HIMIAMSHSEKVCHDMK-----LCKVSFVSVKEGEDIELKCSISPAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNLKIKNCQKSDQGMYYCSDSISNEIMLYYNVSVEKHDQPISTDAEKVFRTGAPGKMKIKGPNVAFV-GEPVHIQCRIDLAHVELPPYPFSSFRWFHNGKIQHSNSISDLTITQSWESTLILESEV-----IVKHVDTKHSGSWVCLYALDGSKFTQKNTATASIYLTVLGSPKSSSEDHYSNGNTNLKPKILK 992
            H+ +A+  +EK   D       + ++S +SV  G  I+L+C ++      + W+K+G   PL    +  + NE      +    + L+IKN    D+G Y C    +NE       S  + D  + +    V     P +  +K  +V    G+P+ ++C++D +       P     W+ +G I   +    ++++    +TL++ S V     I + + T  SG+     A D      K TAT        G+ +S+  D +   + N  PK+++
Sbjct: 5576 HVQMALGKTEKPKMDEGKPPKFILELSDMSVSLGNVIDLECKVTGLPNPSVKWSKDGG--PLIEDSRFEWSNE------ASKGVYQLRIKNATVHDEGTYRC--VATNENGSATTKSFVRMDDGLGSG---VVTASQPPRFTLKMGDVRTTEGQPLKLECKVDAS-------PLPEMVWYKDGAIVTPSDRIQISLSPDGVATLLIPSCVYDDDGIYRVIATNPSGT-----AQD------KGTATVKKLPRDSGARRSADRDVF---DANKAPKLME 5819
[Close]
BLAST of Ig-like domain-containing protein vs. Ensembl Fly
Match: dpr13 (gene:FBgn0034286 transcript:FBtr0300215)

HSP 1 Score: 58.9214 bits (141), Expect = 5.417e-9
Identity = 48/205 (23.41%), Postives = 94/205 (45.85%), Query Frame = 3 
Query:  255 SFVSVKEGEDIELKCSISPAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAA----YSSDPNTWNLKIKNCQKSDQGMYYCSDSISNEIMLYYNVSVEKHDQPISTDAEKVFRTGAPGKMKIKGPNVAFV--GEPVHIQCRIDLAHVELPPYPFSSFRWFHNGKIQHSNSISDLTITQSWESTLILESEVIVKHVDTKHSGSWVCL 851
            + V+ + G    + C++    +G++ W ++ + + LT+G   +  +ER +A    +S D   W L+IK  Q  D G+Y C  S      ++ ++SV +                   + +I GP + ++  G  + +QCR+ + + E   Y F    W+H+ ++   N   D  I  S E      SE+ ++    +HSG++ C+
Sbjct:  183 TVVTTQIGATAHVPCTVHHIGEGVVSWIRKKDYHLLTVGLTTYSSDERFSATHLKHSED---WTLQIKFVQLRDAGVYECQVSTHPPTSIFLHLSVVE------------------ARAEITGPPIRYLTPGSTLRLQCRV-VQNTEASEYIF----WYHDNRM--INYDIDRGINVSTEPDF-QSSELTIQRTRREHSGNFTCV 358
[Close]
BLAST of Ig-like domain-containing protein vs. Ensembl Fly
Match: dpr13 (gene:FBgn0034286 transcript:FBtr0340286)

HSP 1 Score: 58.151 bits (139), Expect = 9.491e-9
Identity = 48/205 (23.41%), Postives = 93/205 (45.37%), Query Frame = 3 
Query:  255 SFVSVKEGEDIELKCSISPAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAA----YSSDPNTWNLKIKNCQKSDQGMYYCSDSISNEIMLYYNVSVEKHDQPISTDAEKVFRTGAPGKMKIKGPNVAFV--GEPVHIQCRIDLAHVELPPYPFSSFRWFHNGKIQHSNSISDLTITQSWESTLILESEVIVKHVDTKHSGSWVCL 851
            + V+ + G    + C++    +G++ W ++ + + LT+G   +  +ER +A    +S D   W L+IK  Q  D G+Y C  S      ++ ++SV                     + +I GP + ++  G  + +QCR+ + + E   Y F    W+H+ ++   N   D  I  S E      SE+ ++    +HSG++ C+
Sbjct:  183 TVVTTQIGATAHVPCTVHHIGEGVVSWIRKKDYHLLTVGLTTYSSDERFSATHLKHSED---WTLQIKFVQLRDAGVYECQVSTHPPTSIFLHLSVV-------------------ARAEITGPPIRYLTPGSTLRLQCRV-VQNTEASEYIF----WYHDNRM--INYDIDRGINVSTEPDF-QSSELTIQRTRREHSGNFTCV 357
[Close]
BLAST of Ig-like domain-containing protein vs. Ensembl Fly
Match: dpr12 (gene:FBgn0085414 transcript:FBtr0335272)

HSP 1 Score: 52.373 bits (124), Expect = 5.580e-7
Identity = 57/222 (25.68%), Postives = 97/222 (43.69%), Query Frame = 3 
Query:  264 SVKEGEDIELKCSISPAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAA-YSSDPNTWNLKIKNCQKSDQGMYYCSDSISNEIMLYY-NVSVEKHDQPISTDAEKVFRTGAPGKMKIKGPNVAFVGEPVHIQCRIDLAHVELPPYPFSSFRWFHNGK-IQHSNSISDLTI-TQSWESTLILESEVIVKHVDTKHSGSWVCLYALDGSKFTQKNTATASIYLTV 917
            +V+ G    L C +S   +  I W +  + + L+ G + +  +ER A  ++   N W L+IK  Q+ D GMY C  S    I+ ++ N+ V            + F  G+ G++ +       +G  +++ C I     E  P P     W  N + I + +S  D+TI T     T   +S +I++      SG++ C         +  NT  ASIY+ V
Sbjct:   88 TVQLGGTAFLVCKVSGVDRNQISWIRRRDWHILSSGAQLYTNDERFAILHTPGSNMWTLQIKFVQRRDHGMYECQVSTPTGIISHFVNLQVV---------VPEAFILGS-GELHVD------MGSTINLVCII-----EKSPTPPQYVYWQKNDRLINYVDSRRDITIETTPGPRT---QSRLIIREPQVTDSGNYTC---------SASNTEPASIYVFV 276
[Close]
BLAST of Ig-like domain-containing protein vs. Ensembl Fly
Match: dpr8 (gene:FBgn0052600 transcript:FBtr0343518)

HSP 1 Score: 49.2914 bits (116), Expect = 5.871e-6
Identity = 46/195 (23.59%), Postives = 85/195 (43.59%), Query Frame = 3 
Query:  276 GEDIELKCSISPAWKGLIIWTKEGNNYPLTLGPKRFYPNERI-AAYSSDPNTWNLKIKNCQKSDQGMYYCSDSISNEI--MLYYNVSVEKHDQPISTDAEKVFRTGAPGKMKIKGPNVAF-VGEPVHIQCRIDLAHVELPPYPFSSFRWFHNGKIQHSNSISDLTITQSWESTLILESEVIVKHVDTKHSGSWVC 848
            G+ ++L C +       + W +  + + LT+G   +  ++R  A +S     W L+I+  Q+ D G+Y C  S +  I   +Y N+      +P+ TD              I GP +    G  +++ C +  A     P P  +  W HN +I + +S     I+   E  ++  S ++V+   T+ SG + C
Sbjct:   57 GKTVKLTCRVKNLGNRTVSWVRHRDIHLLTVGRYTYTSDQRFEAMHSPHAEDWTLRIRYAQRKDSGIYECQISTTPPIGHSVYLNIV-----EPV-TDI-------------IGGPELHINRGSTINLTCIVKFA-----PEPPPTVIWSHNREIINFDSPRG-GISLVTEKGVLTTSRLLVQKAITQDSGLYTC 226
[Close]
BLAST of Ig-like domain-containing protein vs. Ensembl Fly
Match: dpr8 (gene:FBgn0052600 transcript:FBtr0073913)

HSP 1 Score: 49.2914 bits (116), Expect = 5.871e-6
Identity = 46/195 (23.59%), Postives = 85/195 (43.59%), Query Frame = 3 
Query:  276 GEDIELKCSISPAWKGLIIWTKEGNNYPLTLGPKRFYPNERI-AAYSSDPNTWNLKIKNCQKSDQGMYYCSDSISNEI--MLYYNVSVEKHDQPISTDAEKVFRTGAPGKMKIKGPNVAF-VGEPVHIQCRIDLAHVELPPYPFSSFRWFHNGKIQHSNSISDLTITQSWESTLILESEVIVKHVDTKHSGSWVC 848
            G+ ++L C +       + W +  + + LT+G   +  ++R  A +S     W L+I+  Q+ D G+Y C  S +  I   +Y N+      +P+ TD              I GP +    G  +++ C +  A     P P  +  W HN +I + +S     I+   E  ++  S ++V+   T+ SG + C
Sbjct:   57 GKTVKLTCRVKNLGNRTVSWVRHRDIHLLTVGRYTYTSDQRFEAMHSPHAEDWTLRIRYAQRKDSGIYECQISTTPPIGHSVYLNIV-----EPV-TDI-------------IGGPELHINRGSTINLTCIVKFA-----PEPPPTVIWSHNREIINFDSPRG-GISLVTEKGVLTTSRLLVQKAITQDSGLYTC 226
[Close]
BLAST of Ig-like domain-containing protein vs. TrEMBL
Match: A0A3P8AFL9 (Uncharacterized protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS4082 PE=4 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.638e-21
Identity = 71/247 (28.74%), Postives = 102/247 (41.30%), Query Frame = 3 
Query:  252 VSFVSVKEGEDIELKCSISPAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNLKIKNCQKSDQGMYYCS--DSISNEIMLYYNVSVEKHDQPISTDAEK-----------------------------------VFRTGAP--------GKMKIKGPNVAFVGEPVHIQCRIDLAHVELPPYPFSSFRWFHNG--KIQHSNSISDLTITQSWESTLILESEVIVKHVDTKHSGSWVCL 851
            + F+    G+ I+LKC I P    L++W K G +YPLT+G  RF P+ER       PN WNL I N Q +D G+Y CS    ISN      N S  +H Q     +EK                                    ++   P          + + GPN+ F G P+ + CR      E    P  S  W+H G  ++ H      + IT  W  + +LES + +  V+   +G W+CL
Sbjct:   82 IKFMRYNTGDTIQLKCRI-PKGPYLVLWNKLGLDYPLTIGKNRFIPDERFEIQYKPPNRWNLIISNAQLNDTGVYSCSSGSGISNSHSDVNNKSHLRHYQEYQPQSEKNRYKTHTAVTDATTTKKQSKGREYYVSVVEPLPSERYQVDVPFNKIGMKNKTITVTGPNLVFYGTPLELICRASFPSSEAKLDPTISLEWYHRGVRRLSHPFRSGGVYITMQWLDSHLLESRLYIAWVNESEAGQWICL 327
[Close]
BLAST of Ig-like domain-containing protein vs. TrEMBL
Match: A0A183LJV7 (Uncharacterized protein OS=Schistosoma margrebowiei OX=48269 PE=4 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.653e-21
Identity = 71/247 (28.74%), Postives = 102/247 (41.30%), Query Frame = 3 
Query:  252 VSFVSVKEGEDIELKCSISPAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNLKIKNCQKSDQGMYYCS--DSISNEIMLYYNVSVEKHDQPISTDAEK-----------------------------------VFRTGAP--------GKMKIKGPNVAFVGEPVHIQCRIDLAHVELPPYPFSSFRWFHNG--KIQHSNSISDLTITQSWESTLILESEVIVKHVDTKHSGSWVCL 851
            + F+    G+ I+LKC I P    L++W K G +YPLT+G  RF P+ER       PN WNL I N Q +D G+Y CS    ISN      N S  +H Q     +EK                                    ++   P          + + GPN+ F G P+ + CR      E    P  S  W+H G  ++ H      + IT  W  + +LES + +  V+   +G W+CL
Sbjct:   82 IKFMRYNTGDTIQLKCRI-PKGPYLVLWNKLGLDYPLTIGKNRFIPDERFEIQYKPPNRWNLIISNAQLNDTGVYSCSSGSGISNSHSDVNNKSHLRHYQEYQPQSEKNRYKTHTAVTDATTTKKQSKGREYYVSVVEPLPSERYQVDVPFNKIGMKNKTITVTGPNLVFYGTPLELICRASFPSSEAKLDPTISLEWYHRGVRRLSHPFRSGGVYITMQWLDSHLLESRLYIAWVNESEAGQWICL 327
[Close]
BLAST of Ig-like domain-containing protein vs. TrEMBL
Match: A0A430Q275 (Uncharacterized protein OS=Schistosoma bovis OX=6184 GN=DC041_0012929 PE=4 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.985e-21
Identity = 74/247 (29.96%), Postives = 105/247 (42.51%), Query Frame = 3 
Query:  252 VSFVSVKEGEDIELKCSISPAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNLKIKNCQKSDQGMYYCS--DSISNEIMLYYNVSVEKH---DQPIS-----------TDAEKV---------------------FRTGAP--------GKMKIKGPNVAFVGEPVHIQCRIDLAHVELPPYPFSSFRWFHNG--KIQHSNSISDLTITQSWESTLILESEVIVKHVDTKHSGSWVCL 851
            + F+    G+ I+LKC I P    L++W K G +YPLT+G  RF P+ER       PN WNL I N Q +D G+Y C+    ISN      N S  +H    QP S           TDA K                      ++   P          + + GPN+ F G P+ + CR      E    P  S  W+H G  ++ H      + IT  W  + +LES + +  V+   +G W+CL
Sbjct:  115 IKFMRYNTGDTIQLKCRI-PKGPYLVLWNKLGLDYPLTIGKNRFIPDERFEIQYKPPNRWNLIISNAQLNDTGVYSCTSGSGISNSHSNVNNKSDLRHYQEYQPQSEKNRYRIHTAVTDATKTKKQSKGREYYVSVVEPLPSERYQVDVPFNKIGMKNKTITVTGPNLVFYGTPLELICRASFPSSEAKLDPTISLEWYHRGVRRLSHPFRSGGVYITMQWLDSHLLESRLYIAWVNESEAGQWICL 360
[Close]
BLAST of Ig-like domain-containing protein vs. TrEMBL
Match: A0A4E0RKF0 (Uncharacterized protein OS=Fasciola hepatica OX=6192 GN=D915_000306 PE=4 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.519e-20
Identity = 75/279 (26.88%), Postives = 119/279 (42.65%), Query Frame = 3 
Query:  216 SEKVCHDMKLCKVSFVSVKEGEDIELKCSISPAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNLKIKNCQKSDQGMYYCS--------DSISNEI---------------MLYYN--VSVEKHDQPISTDAE----------------KVFRTGAPGKMK---------IKGPNVAFVGEPVHIQCRIDLAHVELPPYPFSSFRWFHNGKIQHSNSI--SDLTITQSWESTLILESEVIVKHVDTKHSGSWVCLYALDGSKFTQKNTAT 896
            ++K  +D     ++FV  + GE I LKC I P    L++W K G +YPL++G +RF P++RI      P+ W L I N + SD G+Y C+        +S +N+                + Y N   SV  H + +S   +                  F+  AP   +         + GP + F G P+ + CR   A  E    P  S  W+H G  +  +      + I+Q W  + +LES ++V       +G W+C   LD S F   + +T
Sbjct:  101 TQKTSNDQMPRSMTFVKFEIGETIRLKCHI-PNGPYLVMWNKVGVDYPLSIGTRRFVPDDRITVRFKSPDKWRLTITNAKLSDSGVYTCTTSEQKSEQNSPANKQASSDHREKWPGQVAHLTYRNDASSVIGHKEELSGSKDFENKDYYVTVVEPNPSDRFQVDAPATERVIKQNKSIVVTGPKIVFYGTPLELICRASFASSEAKLNPAISLEWYHRGVRRRPSRTRSGGVYISQRWLESNLLESRLLVAWASEADAGQWIC---LDRSNFPSSSRST 375
[Close]
BLAST of Ig-like domain-containing protein vs. TrEMBL
Match: A0A4Z2DEW7 (Immunoglobulin V-set domain-containing-like protein isoform 2 OS=Schistosoma japonicum OX=6182 GN=EWB00_001923 PE=4 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.676e-19
Identity = 71/240 (29.58%), Postives = 104/240 (43.33%), Query Frame = 3 
Query:  276 GEDIELKCSISPAWKG--LIIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNLKIKNCQKSDQGMYYCSDSIS--------------NEIMLYYNVSVEKHDQP--ISTD--------------------AEKVFRTGAPG-KMKIK-------GPNVAFVGEPVHIQCRIDLAHVELPPYPFSSFRWFHNGKIQHSNSI--SDLTITQSWESTLILESEVIVKHVDTKHSGSWVCL 851
            G+ I LKC I+   KG  L++W K G +YPLT+G  RF P+ER       PN WNL I N Q +D G+Y C+  +                E   Y++ S E   Q    +TD                      + ++  AP  K++I+       GPN+ F G P+ + CR      E    P  S  W+H G  + SN +    + IT  W  + +LES + +       +G W+CL
Sbjct:    6 GDTIHLKCRIA---KGSYLVLWNKLGLDYPLTIGKNRFIPDERFQIQHKPPNRWNLIISNAQLNDTGVYSCTPGVGISTSQTDISKKSDFKEYQEYHSKSRENSQQTHMKATDDTTRRKNNGREYYVSVVEPLPSERYQVDAPANKIRIRNKTITLTGPNLVFYGTPLELICRASFPSYEAKLDPTISLEWYHRGIRRLSNPLKSGGVYITMHWLDSHLLESRLFIAWASEADAGQWICL 242
[Close]
BLAST of Ig-like domain-containing protein vs. Planmine SMEST
Match: SMESG000027905.1 (SMESG000027905.1)

HSP 1 Score: 696.812 bits (1797), Expect = 0.000e+0
Identity = 334/337 (99.11%), Postives = 335/337 (99.41%), Query Frame = 3 
Query:  138 MNLPDFIAKFTTLASFLIHIMIAMSHSEKVCHDMKLCKVSFVSVKEGEDIELKCSISPAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNLKIKNCQKSDQGMYYCSDSISNEIMLYYNVSVEKHDQPISTDAEKVFRTGAPGKMKIKGPNVAFVGEPVHIQCRIDLAHVELPPYPFSSFRWFHNGKIQHSNSISDLTITQSWESTLILESEVIVKHVDTKHSGSWVCLYALDGSKFTQKNTATASIYLTVLGSPKSSSEDHYSNGNTNLKPKILKFKDSDYLNDHESKTSSEKKNHSQTSQRYQHNLINAILWKIILWRTFYFIFNQ 1148
            MNLPDFIAKFTTLASFLIHIMIAMSHSEKVCHDMKLCKVSFVSVKEGEDIELKCSI PAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNLKIKNCQKSDQGMYYCSDSISNEIMLYYNVSVEKHDQPISTDAEKVFRTGAPGKMKIKGPNVAFVGEPVHIQCRIDLAHVELPPYPFSSFRWFHNGKIQHSNSISDLTITQSWESTLILESEVIVKHVDTKHSGSWVCLYALDGSKFTQKNTATASIYLTVL SPKSSSEDHYSNGN+NLKPKILKFKDSDYLNDHESKTSSEKKNHSQTSQRYQHNLINAILWKIILWRTFYFIFNQ
Sbjct:    1 MNLPDFIAKFTTLASFLIHIMIAMSHSEKVCHDMKLCKVSFVSVKEGEDIELKCSIFPAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNLKIKNCQKSDQGMYYCSDSISNEIMLYYNVSVEKHDQPISTDAEKVFRTGAPGKMKIKGPNVAFVGEPVHIQCRIDLAHVELPPYPFSSFRWFHNGKIQHSNSISDLTITQSWESTLILESEVIVKHVDTKHSGSWVCLYALDGSKFTQKNTATASIYLTVLASPKSSSEDHYSNGNSNLKPKILKFKDSDYLNDHESKTSSEKKNHSQTSQRYQHNLINAILWKIILWRTFYFIFNQ 337
[Close]
BLAST of Ig-like domain-containing protein vs. Planmine SMEST
Match: SMESG000027905.1 (SMESG000027905.1)

HSP 1 Score: 654.825 bits (1688), Expect = 0.000e+0
Identity = 314/317 (99.05%), Postives = 315/317 (99.37%), Query Frame = 3 
Query:  198 MIAMSHSEKVCHDMKLCKVSFVSVKEGEDIELKCSISPAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNLKIKNCQKSDQGMYYCSDSISNEIMLYYNVSVEKHDQPISTDAEKVFRTGAPGKMKIKGPNVAFVGEPVHIQCRIDLAHVELPPYPFSSFRWFHNGKIQHSNSISDLTITQSWESTLILESEVIVKHVDTKHSGSWVCLYALDGSKFTQKNTATASIYLTVLGSPKSSSEDHYSNGNTNLKPKILKFKDSDYLNDHESKTSSEKKNHSQTSQRYQHNLINAILWKIILWRTFYFIFNQ 1148
            MIAMSHSEKVCHDMKLCKVSFVSVKEGEDIELKCSI PAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNLKIKNCQKSDQGMYYCSDSISNEIMLYYNVSVEKHDQPISTDAEKVFRTGAPGKMKIKGPNVAFVGEPVHIQCRIDLAHVELPPYPFSSFRWFHNGKIQHSNSISDLTITQSWESTLILESEVIVKHVDTKHSGSWVCLYALDGSKFTQKNTATASIYLTVL SPKSSSEDHYSNGN+NLKPKILKFKDSDYLNDHESKTSSEKKNHSQTSQRYQHNLINAILWKIILWRTFYFIFNQ
Sbjct:    1 MIAMSHSEKVCHDMKLCKVSFVSVKEGEDIELKCSIFPAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNLKIKNCQKSDQGMYYCSDSISNEIMLYYNVSVEKHDQPISTDAEKVFRTGAPGKMKIKGPNVAFVGEPVHIQCRIDLAHVELPPYPFSSFRWFHNGKIQHSNSISDLTITQSWESTLILESEVIVKHVDTKHSGSWVCLYALDGSKFTQKNTATASIYLTVLASPKSSSEDHYSNGNSNLKPKILKFKDSDYLNDHESKTSSEKKNHSQTSQRYQHNLINAILWKIILWRTFYFIFNQ 317
[Close]
BLAST of Ig-like domain-containing protein vs. Planmine SMEST
Match: SMESG000027905.1 (SMESG000027905.1)

HSP 1 Score: 649.047 bits (1673), Expect = 0.000e+0
Identity = 311/314 (99.04%), Postives = 312/314 (99.36%), Query Frame = 3 
Query:  207 MSHSEKVCHDMKLCKVSFVSVKEGEDIELKCSISPAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNLKIKNCQKSDQGMYYCSDSISNEIMLYYNVSVEKHDQPISTDAEKVFRTGAPGKMKIKGPNVAFVGEPVHIQCRIDLAHVELPPYPFSSFRWFHNGKIQHSNSISDLTITQSWESTLILESEVIVKHVDTKHSGSWVCLYALDGSKFTQKNTATASIYLTVLGSPKSSSEDHYSNGNTNLKPKILKFKDSDYLNDHESKTSSEKKNHSQTSQRYQHNLINAILWKIILWRTFYFIFNQ 1148
            MSHSEKVCHDMKLCKVSFVSVKEGEDIELKCSI PAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNLKIKNCQKSDQGMYYCSDSISNEIMLYYNVSVEKHDQPISTDAEKVFRTGAPGKMKIKGPNVAFVGEPVHIQCRIDLAHVELPPYPFSSFRWFHNGKIQHSNSISDLTITQSWESTLILESEVIVKHVDTKHSGSWVCLYALDGSKFTQKNTATASIYLTVL SPKSSSEDHYSNGN+NLKPKILKFKDSDYLNDHESKTSSEKKNHSQTSQRYQHNLINAILWKIILWRTFYFIFNQ
Sbjct:    1 MSHSEKVCHDMKLCKVSFVSVKEGEDIELKCSIFPAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNLKIKNCQKSDQGMYYCSDSISNEIMLYYNVSVEKHDQPISTDAEKVFRTGAPGKMKIKGPNVAFVGEPVHIQCRIDLAHVELPPYPFSSFRWFHNGKIQHSNSISDLTITQSWESTLILESEVIVKHVDTKHSGSWVCLYALDGSKFTQKNTATASIYLTVLASPKSSSEDHYSNGNSNLKPKILKFKDSDYLNDHESKTSSEKKNHSQTSQRYQHNLINAILWKIILWRTFYFIFNQ 314
[Close]
BLAST of Ig-like domain-containing protein vs. Planmine SMEST
Match: SMESG000067734.1 (SMESG000067734.1)

HSP 1 Score: 60.4622 bits (145), Expect = 9.895e-10
Identity = 56/197 (28.43%), Postives = 86/197 (43.65%), Query Frame = 3 
Query:  327 IIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNLKIKNCQKSDQGMYYCSDSISNEIMLYYNVSVEKHDQPISTDAEKVFRTGAPGKMKI-KGPNVAFVGEPVHIQCRIDLAHVELPPYPFSSFRWFHNGK-IQHSNSI-SDLTITQSWESTLILESEVIVKHVDTKHSGSWVCLYAL-DGSKFTQKNTATASI 905
            I W KEG+   LTLG      N R        N W+L+I N    D G+Y C  ++   +   +++ +E       T  +   R      M I +GP++  + EP H+ C+I  + +    Y   S  W  N K IQ SNS  +++ IT  W+    L S + ++    +H G W C     D  +F +   A  SI
Sbjct:   70 ISWWKEGDLTELTLG--EMVINNRYKINRKLYNHWSLEIDNITSLDSGVYICQINLKKVLENVFHLYIETRT---ITQNDDFPRPKQYIAMPILRGPSMVTIDEPFHLICQI--SPIPKTRYGDVSIEWKQNKKLIQPSNSRKNNIQITMQWKPNSTLVSYIYIQRATIRHQGIWSCNIVFPDYVQFWELEMAKTSI 259
[Close]
BLAST of Ig-like domain-containing protein vs. Planmine SMEST
Match: SMESG000067734.1 (SMESG000067734.1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.947e-9
Identity = 54/202 (26.73%), Postives = 87/202 (43.07%), Query Frame = 3 
Query:  327 IIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNLKIKNCQKSDQGMYYCSDSISNEIMLYYNVSVEKH------DQPISTDAEKVFRTGAPGKMKIKGPNVAFVGEPVHIQCRIDLAHVELPPYPFSSFRWFHNGK-IQHSNSI-SDLTITQSWESTLILESEVIVKHVDTKHSGSWVCLYAL-DGSKFTQKNTATASI 905
            I W KEG+   LTLG      N R        N W+L+I N    D G+Y C  ++   +   +++ +E        D P       +  +     + ++GP++  + EP H+ C+I  + +    Y   S  W  N K IQ SNS  +++ IT  W+    L S + ++    +H G W C     D  +F +   A  SI
Sbjct:   70 ISWWKEGDLTELTLG--EMVINNRYKINRKLYNHWSLEIDNITSLDSGVYICQINLKKVLENVFHLYIETRTITQNDDFPRPKQYIAMPSSLPLTSVVLRGPSMVTIDEPFHLICQI--SPIPKTRYGDVSIEWKQNKKLIQPSNSRKNNIQITMQWKPNSTLVSYIYIQRATIRHQGIWSCNIVFPDYVQFWELEMAKTSI 267
The following BLAST results are available for this feature:
BLAST of Ig-like domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Ig-like domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
unc-897.809e-722.66Muscle M-line assembly protein unc-89 [Source:Uni... [more]
unc-899.581e-722.66Muscle M-line assembly protein unc-89 [Source:Uni... [more]
unc-899.769e-722.66Muscle M-line assembly protein unc-89 [Source:Uni... [more]
unc-899.835e-722.66Muscle M-line assembly protein unc-89 [Source:Uni... [more]
unc-899.854e-722.66Muscle M-line assembly protein unc-89 [Source:Uni... [more]
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BLAST of Ig-like domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
dpr135.417e-923.41gene:FBgn0034286 transcript:FBtr0300215[more]
dpr139.491e-923.41gene:FBgn0034286 transcript:FBtr0340286[more]
dpr125.580e-725.68gene:FBgn0085414 transcript:FBtr0335272[more]
dpr85.871e-623.59gene:FBgn0052600 transcript:FBtr0343518[more]
dpr85.871e-623.59gene:FBgn0052600 transcript:FBtr0073913[more]
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BLAST of Ig-like domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Ig-like domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Ig-like domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Ig-like domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Ig-like domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3P8AFL91.638e-2128.74Uncharacterized protein OS=Schistosoma margrebowie... [more]
A0A183LJV71.653e-2128.74Uncharacterized protein OS=Schistosoma margrebowie... [more]
A0A430Q2755.985e-2129.96Uncharacterized protein OS=Schistosoma bovis OX=61... [more]
A0A4E0RKF05.519e-2026.88Uncharacterized protein OS=Fasciola hepatica OX=61... [more]
A0A4Z2DEW71.676e-1929.58Immunoglobulin V-set domain-containing-like protei... [more]
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BLAST of Ig-like domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Ig-like domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Ig-like domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Ig-like domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Ig-like domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Ig-like domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000027905.10.000e+099.11SMESG000027905.1[more]
SMESG000027905.10.000e+099.05SMESG000027905.1[more]
SMESG000027905.10.000e+099.04SMESG000027905.1[more]
SMESG000067734.19.895e-1028.43SMESG000067734.1[more]
SMESG000067734.11.947e-926.73SMESG000067734.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30027614 ID=SMED30027614|Name=Ig-like domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1597bp
GTTGAATTCGCATGGCGATTTTTCGCATTTTGATTATAATAATCGCCAAA
TAAATCTCATTATTCCGGAATGAAAATGAATTCTAAACAGTTTCCTTCCT
CAATCGGTTTTGTTTTTAATTCTGTGCTATTTTTAATATGAATTTACCGG
ATTTTATCGCCAAATTTACAACTTTAGCGAGCTTCCTAATTCATATTATG
ATCGCTATGTCTCACTCGGAAAAAGTATGCCATGACATGAAACTTTGTAA
GGTTTCCTTTGTATCTGTCAAAGAAGGAGAAGATATTGAATTGAAATGTT
CAATATCTCCCGCTTGGAAAGGACTCATAATTTGGACGAAGGAAGGAAAT
AATTACCCTCTGACTTTGGGACCGAAGCGATTCTATCCCAACGAAAGAAT
AGCTGCCTACTCCTCCGATCCCAATACATGGAATTTGAAAATAAAAAACT
GTCAAAAATCAGATCAAGGAATGTATTATTGTTCCGATTCGATCAGCAAT
GAAATTATGCTATATTACAATGTTTCTGTTGAAAAGCATGATCAACCTAT
ATCAACAGACGCCGAAAAAGTATTTAGAACTGGAGCTCCTGGAAAAATGA
AAATCAAAGGTCCAAATGTCGCGTTTGTCGGTGAGCCAGTTCATATTCAG
TGTCGGATTGACTTAGCACATGTTGAACTGCCACCGTATCCATTTTCATC
TTTTCGTTGGTTTCACAATGGAAAGATTCAACATTCAAATAGCATATCAG
ATTTAACAATCACACAAAGTTGGGAATCCACGTTAATTCTTGAGTCAGAA
GTTATTGTTAAACATGTCGATACAAAACATTCCGGTTCATGGGTCTGCCT
TTATGCGCTAGATGGGTCGAAATTTACTCAAAAAAACACGGCAACCGCAT
CAATTTATTTAACTGTATTAGGTTCACCAAAGTCATCGAGTGAAGATCAT
TACTCCAACGGCAATACAAATTTAAAACCAAAAATATTGAAATTTAAAGA
TTCTGATTACCTAAATGACCACGAATCGAAGACCTCGAGTGAGAAGAAAA
ACCATAGTCAAACCAGCCAAAGATATCAGCACAACTTAATTAATGCAATT
TTATGGAAAATAATATTATGGCGGACATTTTATTTTATTTTTAACCAATG
ATAACAATCAAGATTGTTTAAATATTCAAAAAACTGGTCTTTACTCAAGC
TGAAGCATGTAAAAAATCAAGCACAAAACCTGAAATCAATTTAGTTGGCA
CAATCTTACCAAATATACTGTACAAACAAACTACCATTCTCCATATCCGT
ACCCTCCCCACTCCCCAATTCTTAATAATGTCAACACATATTCTCATCCA
AAACCGCCGAAAGCGAGGAATCAAATCAACCATCACTTTTTCTCGAATCG
CTGATTTACGAGTGCATTTTTATTTATTAACAAATCGCTGTGAAAATCTC
ATGAAGCAGGTGGCGGTTTTATGAAAACGACAAAACAAAAATAATTCGAT
AGATAAAAATATCCTTTTTCTTTAGTTTTATTTCAAACAAATTGCAAACA
AAAAAGTCACATGATTCAAAAAAAATTTTTCTCAAATTTATTTTCGT
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protein sequence of SMED30027614-orf-1

>SMED30027614-orf-1 ID=SMED30027614-orf-1|Name=SMED30027614-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=338bp
MNLPDFIAKFTTLASFLIHIMIAMSHSEKVCHDMKLCKVSFVSVKEGEDI
ELKCSISPAWKGLIIWTKEGNNYPLTLGPKRFYPNERIAAYSSDPNTWNL
KIKNCQKSDQGMYYCSDSISNEIMLYYNVSVEKHDQPISTDAEKVFRTGA
PGKMKIKGPNVAFVGEPVHIQCRIDLAHVELPPYPFSSFRWFHNGKIQHS
NSISDLTITQSWESTLILESEVIVKHVDTKHSGSWVCLYALDGSKFTQKN
TATASIYLTVLGSPKSSSEDHYSNGNTNLKPKILKFKDSDYLNDHESKTS
SEKKNHSQTSQRYQHNLINAILWKIILWRTFYFIFNQ*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR013098Ig_I-set
IPR037448Zig-8
IPR036179Ig-like_dom_sf
IPR003599Ig_sub
IPR003598Ig_sub2
IPR013783Ig-like_fold
IPR007110Ig-like_dom
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003598Immunoglobulin subtype 2SMARTSM00408igc2_5coord: 45..122
e-value: 0.0013
score: 28.0
IPR003599Immunoglobulin subtypeSMARTSM00409IG_3ccoord: 157..261
e-value: 2.1
score: 17.3
coord: 39..132
e-value: 6.5E-6
score: 35.6
IPR013098Immunoglobulin I-setPFAMPF07679I-setcoord: 41..116
e-value: 2.8E-5
score: 24.1
IPR013783Immunoglobulin-like foldGENE3DG3DSA:2.60.40.10coord: 36..134
e-value: 2.6E-15
score: 58.3
IPR013783Immunoglobulin-like foldGENE3DG3DSA:2.60.40.10coord: 153..271
e-value: 5.9E-7
score: 31.4
IPR037448Zwei Ig domain protein zig-8PANTHERPTHR23279DEFECTIVE PROBOSCIS EXTENSION RESPONSE DPR -RELATEDcoord: 40..283
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 4..115
score: 7.322
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 151..253
score: 8.702
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..27
score: 0.562
IPR036179Immunoglobulin-like domain superfamilySUPERFAMILYSSF48726Immunoglobulincoord: 40..118
IPR036179Immunoglobulin-like domain superfamilySUPERFAMILYSSF48726Immunoglobulincoord: 160..265