Mitochondrial ribosomal protein L4

Overview
NameMitochondrial ribosomal protein L4
Smed IDSMED30027556
Length (bp)1105
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Mitochondrial ribosomal protein L4 (SMED30027556) t-SNE clustered cells

Violin plots show distribution of expression levels for Mitochondrial ribosomal protein L4 (SMED30027556) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Mitochondrial ribosomal protein L4 (SMED30027556) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Mitochondrial ribosomal protein L4 (SMED30027556) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30027556

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30027556SMESG000041898.1 SmedASXL_005259SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30027556SMESG000041898.1 SmedASXL_005259SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30027556SMESG000018767.1 SMESG000018766.1 SMESG000018762.1 SMESG000018760.1 Contig3866GPL15192PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027556SMESG000041898.1 Contig3866GPL15192PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Human
Match: MRPL4 (mitochondrial ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:14276])

HSP 1 Score: 204.142 bits (518), Expect = 8.749e-63
Identity = 98/218 (44.95%), Postives = 144/218 (66.06%), Query Frame = 2 
Query:  215 TDVKPKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNST-DEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLI 865
            T  +P QAW+E+L+  +  ++G  DLHPDVF   PRLD+++    WQ  ++ + + K  TR EV   G+K WPQKG+GRARHG   +P + GG    GP GP +Y+ +LP+ VR LGL   L++KL QD+LHI+D L LPT D +YL  L   R WG SVL V+ T +E P++I +  S +  + +IPA  +NV S++K+ T++LTLP++  +E+KL+
Sbjct:   57 THRRPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKLL 274
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Human
Match: MRPL4 (mitochondrial ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:14276])

HSP 1 Score: 204.142 bits (518), Expect = 1.141e-62
Identity = 98/218 (44.95%), Postives = 144/218 (66.06%), Query Frame = 2 
Query:  215 TDVKPKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNST-DEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLI 865
            T  +P QAW+E+L+  +  ++G  DLHPDVF   PRLD+++    WQ  ++ + + K  TR EV   G+K WPQKG+GRARHG   +P + GG    GP GP +Y+ +LP+ VR LGL   L++KL QD+LHI+D L LPT D +YL  L   R WG SVL V+ T +E P++I +  S +  + +IPA  +NV S++K+ T++LTLP++  +E+KL+
Sbjct:   57 THRRPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKLL 274
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Human
Match: MRPL4 (mitochondrial ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:14276])

HSP 1 Score: 204.142 bits (518), Expect = 1.141e-62
Identity = 98/218 (44.95%), Postives = 144/218 (66.06%), Query Frame = 2 
Query:  215 TDVKPKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNST-DEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLI 865
            T  +P QAW+E+L+  +  ++G  DLHPDVF   PRLD+++    WQ  ++ + + K  TR EV   G+K WPQKG+GRARHG   +P + GG    GP GP +Y+ +LP+ VR LGL   L++KL QD+LHI+D L LPT D +YL  L   R WG SVL V+ T +E P++I +  S +  + +IPA  +NV S++K+ T++LTLP++  +E+KL+
Sbjct:   57 THRRPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKLL 274
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Human
Match: MRPL4 (mitochondrial ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:14276])

HSP 1 Score: 176.407 bits (446), Expect = 1.622e-52
Identity = 86/189 (45.50%), Postives = 121/189 (64.02%), Query Frame = 2 
Query:  215 TDVKPKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNST-DEAPRNISKICSLIPHYMVIPA 778
            T  +P QAW+E+L+  +  ++G  DLHPDVF   PRLD+++    WQ  ++ + + K  TR EV   G+K WPQKG+GRARHG   +P + GG    GP GP +Y+ +LP+ VR LGL   L++KL QD+LHI+D L LPT D +YL  L   R WG SVL V+ T +E P++I +  S +  + +IPA
Sbjct:   57 THRRPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPA 245
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Human
Match: MRPL4 (mitochondrial ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:14276])

HSP 1 Score: 177.948 bits (450), Expect = 5.199e-52
Identity = 87/193 (45.08%), Postives = 122/193 (63.21%), Query Frame = 2 
Query:  215 TDVKPKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNST-DEAPRNISKICSLIPHYMVIPAYAVN 790
            T  +P QAW+E+L+  +  ++G  DLHPDVF   PRLD+++    WQ  ++ + + K  TR EV   G+K WPQKG+GRARHG   +P + GG    GP GP +Y+ +LP+ VR LGL   L++KL QD+LHI+D L LPT D +YL  L   R WG SVL V+ T +E P++I +  S +  + +IPA A  
Sbjct:   57 THRRPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVATR 249
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Celegans
Match: mrpl-4 (Mitochondrial Ribosomal Protein, Large [Source:UniProtKB/TrEMBL;Acc:O17005])

HSP 1 Score: 195.667 bits (496), Expect = 5.872e-60
Identity = 98/222 (44.14%), Postives = 140/222 (63.06%), Query Frame = 2 
Query:  212 NTDVKPKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDL-NLPTDDKEYLINLIEGRNWGKSVLFVNSTDEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLIVSL 874
            N  +K  QAW+  L   +D KLG +DLHPD+F   PR+D+++ NL WQ VYR V   K+ T+ E+   G+K WPQK +GRA  G   +PQFI G    G  GPR +F +LP  VR+ GL   L++K  QD+LHIVD + NL   D +Y I+L E RN+G SVLFV+  DE    +++    +P   V+P Y +N +SL+KYDT++L+  +L  +EE+L+  +
Sbjct:   43 NPFIKTPQAWVSNLDTIEDEKLGLVDLHPDIFRTSPRIDILHRNLTWQSVYRNVQMTKMLTKAEMPGGGRKPWPQKKTGRAHVGSIRSPQFIRGGFANGVRGPRTWFYMLPDAVRIQGLCVALTLKHTQDDLHIVDKIQNLQNGDPKYWIDLCEARNYGYSVLFVDDCDEISGGLAEAQQALPWLNVMPVYGLNCFSLMKYDTIVLSRSALERVEERLLTQM 264
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Fly
Match: mRpL4 (gene:FBgn0001995 transcript:FBtr0080843)

HSP 1 Score: 213.386 bits (542), Expect = 1.073e-66
Identity = 98/215 (45.58%), Postives = 143/215 (66.51%), Query Frame = 2 
Query:  230 KQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNSTDEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLIVSL 874
            +QAW+E      +RK+G ++LHPDVF A PR+D+I  N+ WQ  YR+V      TR EV   G+K WPQKG GRARHG   +P   GG  V GP  P  +F +LP   R+LGLTSTLS+KL QD+LHI+D++++PT D E+L +LI  RNWG SVL V+     P NI +    + +  ++P + +NV+S++K+DT++LT+ ++  +E++L+  L
Sbjct:   65 RQAWIENTDAVAERKVGLIELHPDVFAAQPRVDIIQENVEWQSKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGRARHGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIDNVDIPTGDAEFLKDLIAERNWGPSVLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKHDTLVLTVAAVKHLEQRLLYQL 279
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Zebrafish
Match: mrpl4 (mitochondrial ribosomal protein L4 [Source:NCBI gene;Acc:553771])

HSP 1 Score: 187.578 bits (475), Expect = 1.437e-56
Identity = 94/213 (44.13%), Postives = 137/213 (64.32%), Query Frame = 2 
Query:  227 PKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNSTDEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLI 865
            P Q WLE+L   D  +LG +DLHPDVF    RLD+++    WQ  ++ + +  + TR EV   G+K W QK +GRARHG   +P + GG  + GP GP +Y+ +LP+ VR+ GL   LS KL QD LHIVD L +PT D +YL +L++ R WG SVL V+  +E P+NI K    +    +IPA  +NV SL+K+++++LTL ++  +E+KL+
Sbjct:   70 PAQTWLESLGSRDSDQLGVVDLHPDVFSVPIRLDILHAVEVWQRNFKRISYANVKTRAEVRGGGRKPWQQKRTGRARHGSIRSPLWRGGGIIHGPRGPTSYYYMLPMKVRVQGLKIALSAKLAQDYLHIVDSLEIPTPDPQYLQDLVKHRQWGDSVLIVDVGEEFPQNILKATEDLKTVNIIPALGLNVHSLLKHESLVLTLEAVKFLEKKLL 282
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Zebrafish
Match: mrpl4 (mitochondrial ribosomal protein L4 [Source:NCBI gene;Acc:553771])

HSP 1 Score: 187.578 bits (475), Expect = 1.522e-56
Identity = 94/213 (44.13%), Postives = 137/213 (64.32%), Query Frame = 2 
Query:  227 PKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNSTDEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLI 865
            P Q WLE+L   D  +LG +DLHPDVF    RLD+++    WQ  ++ + +  + TR EV   G+K W QK +GRARHG   +P + GG  + GP GP +Y+ +LP+ VR+ GL   LS KL QD LHIVD L +PT D +YL +L++ R WG SVL V+  +E P+NI K    +    +IPA  +NV SL+K+++++LTL ++  +E+KL+
Sbjct:   69 PAQTWLESLGSRDSDQLGVVDLHPDVFSVPIRLDILHAVEVWQRNFKRISYANVKTRAEVRGGGRKPWQQKRTGRARHGSIRSPLWRGGGIIHGPRGPTSYYYMLPMKVRVQGLKIALSAKLAQDYLHIVDSLEIPTPDPQYLQDLVKHRQWGDSVLIVDVGEEFPQNILKATEDLKTVNIIPALGLNVHSLLKHESLVLTLEAVKFLEKKLL 281
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Xenopus
Match: mrpl4 (mitochondrial ribosomal protein L4 [Source:NCBI gene;Acc:549976])

HSP 1 Score: 188.348 bits (477), Expect = 7.067e-57
Identity = 92/217 (42.40%), Postives = 140/217 (64.52%), Query Frame = 2 
Query:  215 TDVKPKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNSTDEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLI 865
            + + PK  WLE+L+ PDD+ LG + LHPDVF   PR+D+++  + WQ  ++ +   K+ TR EV   GKK   QKGSGRAR G   +P + GG    GP GP +Y+ ++P+ +R+ GL   L+ KL QD+LH++D L + T D +YL++LI+ R WG+SVL V+  +  P NI      +    VIPA  ++V+ ++K+DTVILT  +++ +EEKL+
Sbjct:   53 SHLSPKPVWLESLRHPDDQPLGLVHLHPDVFTVPPRIDILHQVVTWQRNFKRISHAKVKTRAEVRGGGKKPRQQKGSGRARQGSIRSPLWRGGGVAHGPRGPTSYYYMMPMKMRVQGLKIALTAKLAQDDLHVIDSLEISTPDPQYLVDLIKHRQWGESVLIVDVNENLPENIFNATVNLKKINVIPAIGLSVFGMLKHDTVILTAGAVDFLEEKLL 269
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Xenopus
Match: mrpl4 (mitochondrial ribosomal protein L4 [Source:NCBI gene;Acc:549976])

HSP 1 Score: 164.081 bits (414), Expect = 4.398e-47
Identity = 83/204 (40.69%), Postives = 125/204 (61.27%), Query Frame = 2 
Query:  215 TDVKPKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNSTDEAPRNISKICSLIPHYMVIPA----YAVNVWSLIKYD 814
            + + PK  WLE+L+ PDD+ LG + LHPDVF   PR+D+++  + WQ  ++ +   K+ TR EV   GKK   QKGSGRAR G   +P + GG    GP GP +Y+ ++P+ +R+ GL   L+ KL QD+LH++D L + T D +YL++LI+ R WG+SVL V+  +  P NI      +    VIPA    +   +W+ I+Y+
Sbjct:   62 SHLSPKPVWLESLRHPDDQPLGLVHLHPDVFTVPPRIDILHQVVTWQRNFKRISHAKVKTRAEVRGGGKKPRQQKGSGRARQGSIRSPLWRGGGVAHGPRGPTSYYYMMPMKMRVQGLKIALTAKLAQDDLHVIDSLEISTPDPQYLVDLIKHRQWGESVLIVDVNENLPENIFNATVNLKKINVIPAIGECFYHFLWNNIQYN 265
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Mouse
Match: Mrpl4 (mitochondrial ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:2137210])

HSP 1 Score: 208.379 bits (529), Expect = 1.248e-64
Identity = 108/282 (38.30%), Postives = 169/282 (59.93%), Query Frame = 2 
Query:   23 MIKIFKLSNREFKILSIFRSLNTSLVIFNQNTNENDNYEEPCDLPPVIPSIVKRNLLESVSCSNTDVKPKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNST-DEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLI 865
            M+++F+ ++R    LS  R +++      +         EP D   ++  ++++  L          +P QAW+E+L+  +  ++G  +LHPDVF   PRLD+++    WQ  +R + +    TR EV   G+K W QKGSGRARHG   +P + GG    GP GP +Y+ +LP+ VR LGL   L++KL QD+LHIVD L LPT D +YL  L + R+WG SVL V+ T +E P+N+    S +  + +IPA  +NV+S++K+ T++LTLPS+  +E+KL+
Sbjct:    1 MLRLFQAASRASLRLSGSRVIHS----LAEGAERPAEISEPRDSAGLLDPVLRKCELRI----PVHRRPVQAWVESLRGFEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKPWQQKGSGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYRHWGSSVLLVDLTHEEMPKNVVAATSGLNSFNLIPAVGLNVYSMLKHQTLVLTLPSVAFLEDKLL 274
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Mouse
Match: Mrpl4 (mitochondrial ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:2137210])

HSP 1 Score: 151.369 bits (381), Expect = 4.471e-43
Identity = 89/275 (32.36%), Postives = 144/275 (52.36%), Query Frame = 2 
Query:   23 MIKIFKLSNREFKILSIFRSLNTSLVIFNQNTNENDNYEEPCDLPPVIPSIVKRNLLESVSCSNTDVKPKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVE---------RTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNST-DEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDT 817
            M+++F+ ++R    LS  R +++      +         EP D   ++  ++++  L          +P QAW+E+L+  +  ++G  +LHPDVF   PRLD+++    WQ  +R + +    TR E+          +   K    + SG       T P    G    GP GP +Y+ +LP+ VR LGL   L++KL QD+LHIVD L LPT D +YL  L + R+WG SVL V+ T +E P+N+    S +  + +IPA  +NV+S++K+ T
Sbjct:    1 MLRLFQAASRASLRLSGSRVIHS----LAEGAERPAEISEPRDSAGLLDPVLRKCELRI----PVHRRPVQAWVESLRGFEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAELLNITHSNTLCQPSSKFLRSQTSGDTNTSYATVP---AGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYRHWGSSVLLVDLTHEEMPKNVVAATSGLNSFNLIPAVGLNVYSMLKHQT 264
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Mouse
Match: Mrpl4 (mitochondrial ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:2137210])

HSP 1 Score: 145.591 bits (366), Expect = 2.333e-41
Identity = 80/226 (35.40%), Postives = 123/226 (54.42%), Query Frame = 2 
Query:   26 IKIFKLSNREFKILSIFRSLNTSLVIFNQNTNENDNYEEPCDLPPVIPSIVKRNLLESVSCSNTDVKPKQAWLETLKCPDDRKLGFLDLHPDVFGAFPR--------LDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRN 679
            +++F+ ++R    LS  R +++      +         EP D   ++  ++++  L          +P QAW+E+L+  +  ++G  +LHPDVF   PR        LD+++    WQ  +R + +    TR EV   G+K W QKGSGRARHG   +P + GG    GP GP +Y+ +LP+ VR LGL   L++KL QD+LHIVD L LPT D +YL  L + R+
Sbjct:    2 LRLFQAASRASLRLSGSRVIHS----LAEGAERPAEISEPRDSAGLLDPVLRKCELRI----PVHRRPVQAWVESLRGFEQERIGLAELHPDVFATAPRWSLTMKYRLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKPWQQKGSGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYRH 219
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Mouse
Match: Mrpl4 (mitochondrial ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:2137210])

HSP 1 Score: 88.9669 bits (219), Expect = 1.219e-20
Identity = 49/159 (30.82%), Postives = 83/159 (52.20%), Query Frame = 2 
Query:   23 MIKIFKLSNREFKILSIFRSLNTSLVIFNQNTNENDNYEEPCDLPPVIPSIVKRNLLESVSCSNTDVKPKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQ 499
            M+++F+ ++R    LS  R +++      +         EP D   ++  ++++  L          +P QAW+E+L+  +  ++G  +LHPDVF   PRLD+++    WQ  +R + +    TR EV   G+K W QKGSGRARHG   +P + G  +
Sbjct:    1 MLRLFQAASRASLRLSGSRVIHS----LAEGAERPAEISEPRDSAGLLDPVLRKCELRI----PVHRRPVQAWVESLRGFEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKPWQQKGSGRARHGSIRSPLWRGATE 151
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Mouse
Match: Mrpl4 (mitochondrial ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:2137210])

HSP 1 Score: 88.5817 bits (218), Expect = 1.333e-20
Identity = 49/157 (31.21%), Postives = 82/157 (52.23%), Query Frame = 2 
Query:   23 MIKIFKLSNREFKILSIFRSLNTSLVIFNQNTNENDNYEEPCDLPPVIPSIVKRNLLESVSCSNTDVKPKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGG 493
            M+++F+ ++R    LS  R +++      +         EP D   ++  ++++  L          +P QAW+E+L+  +  ++G  +LHPDVF   PRLD+++    WQ  +R + +    TR EV   G+K W QKGSGRARHG   +P + G 
Sbjct:    1 MLRLFQAASRASLRLSGSRVIHS----LAEGAERPAEISEPRDSAGLLDPVLRKCELRI----PVHRRPVQAWVESLRGFEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKPWQQKGSGRARHGSIRSPLWRGA 149
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. UniProt/SwissProt
Match: sp|Q9DCU6|RM04_MOUSE (39S ribosomal protein L4, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl4 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 8.726e-64
Identity = 108/282 (38.30%), Postives = 169/282 (59.93%), Query Frame = 2 
Query:   23 MIKIFKLSNREFKILSIFRSLNTSLVIFNQNTNENDNYEEPCDLPPVIPSIVKRNLLESVSCSNTDVKPKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNST-DEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLI 865
            M+++F+ ++R    LS  R +++      +         EP D   ++  ++++  L          +P QAW+E+L+  +  ++G  +LHPDVF   PRLD+++    WQ  +R + +    TR EV   G+K W QKGSGRARHG   +P + GG    GP GP +Y+ +LP+ VR LGL   L++KL QD+LHIVD L LPT D +YL  L + R+WG SVL V+ T +E P+N+    S +  + +IPA  +NV+S++K+ T++LTLPS+  +E+KL+
Sbjct:    1 MLRLFQAASRASLRLSGSRVIHS----LAEGAERPAEISEPRDSAGLLDPVLRKCELRI----PVHRRPVQAWVESLRGFEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKPWQQKGSGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYRHWGSSVLLVDLTHEEMPKNVVAATSGLNSFNLIPAVGLNVYSMLKHQTLVLTLPSVAFLEDKLL 274
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. UniProt/SwissProt
Match: sp|Q9BYD3|RM04_HUMAN (39S ribosomal protein L4, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL4 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.479e-62
Identity = 98/218 (44.95%), Postives = 144/218 (66.06%), Query Frame = 2 
Query:  215 TDVKPKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNST-DEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLI 865
            T  +P QAW+E+L+  +  ++G  DLHPDVF   PRLD+++    WQ  ++ + + K  TR EV   G+K WPQKG+GRARHG   +P + GG    GP GP +Y+ +LP+ VR LGL   L++KL QD+LHI+D L LPT D +YL  L   R WG SVL V+ T +E P++I +  S +  + +IPA  +NV S++K+ T++LTLP++  +E+KL+
Sbjct:   57 THRRPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKLL 274
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. UniProt/SwissProt
Match: sp|Q32PI6|RM04_BOVIN (39S ribosomal protein L4, mitochondrial OS=Bos taurus OX=9913 GN=MRPL4 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.881e-60
Identity = 96/215 (44.65%), Postives = 142/215 (66.05%), Query Frame = 2 
Query:  224 KPKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVN-STDEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLI 865
            +P QAW+E+L+  +  ++G  +LHPDVF   PRLD+++    WQ  ++ + + K  TR EV   G+K W QKGSGRARHG   +P + GG    GP GP +Y+ +LP+ VR+ GL   L++KL QD+LHIVD L LPT D +YL+ L   R WG SVLFV+   ++ P+N+    S +  + +IPA  +NV S++K+ T++LTLP++  +EEKL+
Sbjct:   60 RPVQAWVESLRGYEQERVGLTELHPDVFSTAPRLDILHQVAIWQKNFKRISYAKTKTRAEVRGGGRKPWQQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRVQGLKVALTVKLAQDDLHIVDSLELPTTDPQYLMELARYRRWGDSVLFVDLEHEDMPQNVVAATSGLKTFNLIPAIGLNVHSMLKHQTLVLTLPTVAFLEEKLL 274
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. UniProt/SwissProt
Match: sp|Q503X2|RM04_DANRE (39S ribosomal protein L4, mitochondrial OS=Danio rerio OX=7955 GN=mrpl4 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 1.084e-55
Identity = 94/213 (44.13%), Postives = 137/213 (64.32%), Query Frame = 2 
Query:  227 PKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNSTDEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLI 865
            P Q WLE+L   D  +LG +DLHPDVF    RLD+++    WQ  ++ + +  + TR EV   G+K W QK +GRARHG   +P + GG  + GP GP +Y+ +LP+ VR+ GL   LS KL QD LHIVD L +PT D +YL +L++ R WG SVL V+  +E P+NI K    +    +IPA  +NV SL+K+++++LTL ++  +E+KL+
Sbjct:   70 PAQTWLESLGSRDSDQLGVVDLHPDVFSVPIRLDILHAVEVWQRNFKRISYANVKTRAEVRGGGRKPWQQKRTGRARHGSIRSPLWRGGGIIHGPRGPTSYYYMLPMKVRVQGLKIALSAKLAQDYLHIVDSLEIPTPDPQYLQDLVKHRQWGDSVLIVDVGEEFPQNILKATEDLKTVNIIPALGLNVHSLLKHESLVLTLEAVKFLEKKLL 282
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. UniProt/SwissProt
Match: sp|Q6G2W6|RL4_BARHE (50S ribosomal protein L4 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) OX=283166 GN=rplD PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.844e-32
Identity = 67/204 (32.84%), Postives = 110/204 (53.92%), Query Frame = 2 
Query:  251 LKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNSTDEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKL 862
            +K  D  ++G L +   VFG  PR D++   +RWQ   R     +   R +V RTG KM+ QKG+GRARH    APQF GG +  GP+  R++   LP  +R LGL   LS KL  D+L +VD+ N+       L++      +  ++L     +E   N S+  S IP+  ++P   +NV+ +++   ++L+  ++ ++EE+ 
Sbjct:    5 IKTLDGNEVGKLKVSESVFGLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRTGAKMFKQKGTGRARHSSARAPQFRGGGKAHGPV-VRSHAHTLPKKIRALGLRFALSAKLKADDLIVVDEFNVKDAKTRMLVSCFSKLGFDNALLI--GGNEVDLNFSRATSNIPNIDILPIQGINVYDILRRSKLVLSKAAVEVLEERF 205
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. TrEMBL
Match: A0A0V0G7Z9 (Putative mitochondrial 39s ribosomal protein l4 OS=Triatoma dimidiata OX=72491 PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 1.203e-76
Identity = 110/216 (50.93%), Postives = 158/216 (73.15%), Query Frame = 2 
Query:  227 PKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNSTDEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLIVSL 874
            P+QAW+E +  P+++KLG +DLHPDVFGA PR+D+I+ N+RWQ +Y++V +     R EV   G+K WPQKG GRARHG   +P F GG  + GP  P+ YF +LP   R+LGLTSTLS+KL QD+LHIVD+L +PT+D ++L +L++ RNWG SVLF++ TD  PRNI+     I H  ++P Y +NV+S++K++T++LTL ++  IEEK++  L
Sbjct:   58 PRQAWVENMNTPEEKKLGIIDLHPDVFGAMPRIDIIHENVRWQSLYKYVSYAHTKVRSEVRGGGRKPWPQKGLGRARHGSIRSPLFRGGGVIHGPRSPKTYFFMLPFYKRVLGLTSTLSVKLAQDDLHIVDNLEIPTEDPKFLEDLVQERNWGVSVLFIDDTDIMPRNITVAADNIKHMNLMPVYGLNVYSMLKHETLVLTLAAVEKIEEKILFQL 273
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. TrEMBL
Match: A0A171BA10 (39s ribosomal protein mitochondrial (Fragment) OS=Triatoma infestans OX=30076 PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 7.002e-76
Identity = 111/216 (51.39%), Postives = 156/216 (72.22%), Query Frame = 2 
Query:  227 PKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNSTDEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLIVSL 874
            P+QAW+E +  P+++KLG +DLHPDVFG  PR+D+I  N+RWQ +Y++V +     R EV   G+K WPQKG GRARHG   +P F GG  + GP  P+ YF +LP   RLLGLTSTLS+KL QD+LHIVD+L +PT+D ++L +L++ RNWG SVLF++ TD  PRNI+     I H  ++P Y +NV+S++K++T++LTL +L  IEEK++  L
Sbjct:   27 PRQAWVENINTPEEKKLGIIDLHPDVFGVMPRIDIIQENVRWQSLYKYVCYAHTKVRNEVRGGGRKPWPQKGLGRARHGSIRSPLFRGGGVIHGPRSPKTYFFMLPFYKRLLGLTSTLSVKLAQDDLHIVDNLEIPTEDPKFLEDLVQERNWGVSVLFIDDTDIMPRNITVAADNIKHMNLMPVYGLNVYSMLKHETLVLTLAALEKIEEKILFQL 242
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. TrEMBL
Match: A0A023F7M6 (Putative mitochondrial/ ribosomal protein l4 OS=Triatoma infestans OX=30076 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 1.841e-75
Identity = 110/216 (50.93%), Postives = 156/216 (72.22%), Query Frame = 2 
Query:  227 PKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNSTDEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLIVSL 874
            P+QAW+E +  P+++KLG +DLHPDVFG  PR+D+I  N+RWQ +Y++V +     R EV   G+K WPQKG GRARHG   +P F GG  + GP  P+ YF +LP   RLLGLTSTLS+KL QD+LHIVD+L +PT+D ++L +L++ RNWG SVLF++ TD  PRNI+     I H  ++P Y +NV+S++K++T++LTL +L  IE+K++  L
Sbjct:   58 PRQAWVENINTPEEKKLGIIDLHPDVFGVMPRIDIIQENVRWQSLYKYVCYAHTKVRNEVRGGGRKPWPQKGLGRARHGSIRSPLFRGGGVIHGPRSPKTYFFMLPFYKRLLGLTSTLSVKLAQDDLHIVDNLEIPTEDHKFLEDLVQERNWGVSVLFIDDTDIMPRNITVAADNIKHMNLMPVYGLNVYSMLKHETLVLTLAALEKIEDKILFQL 273
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. TrEMBL
Match: A0A069DS05 (Putative mitochondrial 39s ribosomal protein l4 OS=Panstrongylus megistus OX=65343 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 4.240e-75
Identity = 108/216 (50.00%), Postives = 156/216 (72.22%), Query Frame = 2 
Query:  227 PKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNSTDEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLIVSL 874
            P+QAW+E +  P+++KLG +DLHPDVFG  PR+D+I+ N+RWQ +Y++V +     R EV   G+K WPQKG G+ARHG   +P F GG  + GP  P+ YF +LP   RLLGLTSTLS+KL QD+LHIVD L +PT++ ++L +L++ RNWG SVLF++ TD  PRNI+     I H  ++P Y +NV+S++K++T++LTL ++  IEEK++  L
Sbjct:   58 PRQAWVENMNTPEEKKLGIIDLHPDVFGVMPRIDIIHENVRWQSLYKYVSYAHTKVRSEVRGGGRKPWPQKGLGKARHGSIRSPLFRGGGVIHGPRSPKTYFFMLPFYKRLLGLTSTLSVKLAQDDLHIVDTLEIPTEEPKFLEDLVQERNWGVSVLFIDDTDIMPRNITVAADNIKHMNLMPVYGLNVYSMLKHETLVLTLAAVEKIEEKILFQL 273
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. TrEMBL
Match: A0A224XL40 (Putative mitochondrial/ ribosomal protein l4 OS=Panstrongylus lignarius OX=156445 PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 4.669e-75
Identity = 107/216 (49.54%), Postives = 157/216 (72.69%), Query Frame = 2 
Query:  227 PKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNSTDEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLIVSL 874
            P+QAW+E +  P+++KLG +DLHPDVFG  PR+D+I  N+RWQ +Y++V++     R EV   G+K WPQKG G+ARHG   +P F GG  + GP  P+ YF +LP   RLLGLTSTLS+KL QD+LHIV++L +PT++ ++L +L++ RNWG SVLF++ TD  PRNI+     I H  ++P Y +NV+S++K++T++LTL ++  IEEK++  L
Sbjct:   58 PRQAWVENMNTPEEKKLGIIDLHPDVFGVMPRIDIIQENVRWQSLYKYVNYAHTKVRSEVRGGGRKPWPQKGLGKARHGSIRSPLFRGGGVIHGPRSPKTYFYILPFYKRLLGLTSTLSVKLAQDDLHIVNNLEIPTEEPKFLEDLVQERNWGVSVLFIDDTDIMPRNITVAADNIKHMNLMPVYGLNVYSMLKHETLVLTLAAVEKIEEKILFQL 273
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Cavefish
Match: mrpl4 (mitochondrial ribosomal protein L4 [Source:NCBI gene;Acc:103037881])

HSP 1 Score: 192.2 bits (487), Expect = 2.567e-58
Identity = 94/215 (43.72%), Postives = 137/215 (63.72%), Query Frame = 2 
Query:  221 VKPKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNSTDEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLI 865
            + P Q WL +L+  D   LG +DLHPDVF    RLD+++    WQ  ++ + + K+ +R EV   GKK W QKGSGRARHG   +P + GG    GP GP +Y+ +LP+ VR+ GL   L+ KL QD LHIVD L +PT D  YL +L++ R WG SVL V+  +E P+N+ +    +    +IPA  +NV S++KY+T++LTL ++  +E+KL+
Sbjct:   67 LSPVQTWLHSLESQDSEPLGIVDLHPDVFAVPVRLDILHAVEVWQRNFKRISYAKVKSRAEVSGGGKKPWRQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRVQGLKVALTSKLTQDCLHIVDSLEIPTPDPHYLQDLVKHRQWGNSVLIVDVGEEFPQNVLQATETLKTISIIPAIGLNVHSMLKYETLVLTLDTVKFLEKKLL 281
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Sea Lamprey
Match: mrpl4 (mitochondrial ribosomal protein L4 [Source:NCBI gene;Acc:553771])

HSP 1 Score: 202.216 bits (513), Expect = 1.880e-63
Identity = 97/212 (45.75%), Postives = 144/212 (67.92%), Query Frame = 2 
Query:  230 KQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNSTDEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLI 865
            +QAWLE+L+  D  +LG +DLHPDVFG  PRLD+++  L WQ  ++ + + K  TR E+   G+K W QKGSGRARHG   +P + GG    GP GP +Y+ +LP+ VR+ GLT  LS+K  QD+LHIVD L++PT D +YL++L + R WG SVL V+  ++ P+NI +    +    V+PA  +NV+S++KY T++LT+ ++  +E KL+
Sbjct:   25 RQAWLESLRGLDVDQLGLVDLHPDVFGVPPRLDILHQVLIWQKNFKRISYAKTKTRAEMRGGGRKPWNQKGSGRARHGSIRSPLWKGGGVAHGPRGPISYYYMLPMKVRVKGLTVALSVKHAQDDLHIVDSLDIPTADPQYLLDLAQYRQWGDSVLIVDVNEQMPKNILEATEKLKTITVMPALGLNVYSMLKYHTLVLTVDTVRFLERKLL 236
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Yeast
Match: YML6 (Mitochondrial ribosomal protein of the large subunit; has similarity to E. coli L4 ribosomal protein and human mitoribosomal MRP-L4 protein; essential for viability, unlike most other mitoribosomal proteins [Source:SGD;Acc:S000004487])

HSP 1 Score: 49.2914 bits (116), Expect = 3.039e-7
Identity = 38/140 (27.14%), Postives = 58/140 (41.43%), Query Frame = 2 
Query:  212 NTDVKPKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITT-----RPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIV 616
            N  + PK A +     P    L F+ +      A  R D++     W+ V    D R++       R E   + +K+ PQKGSGRAR GD  +P    G +      P  Y + LP  V  +   + LS +     L ++
Sbjct:   34 NAAIPPKYALVTVRSFPSLEPLTFVPVPTSTVAAPLRRDIL-----WRAVVYENDNRRVGASNPPGRSENGFSRRKLMPQKGSGRARVGDANSPTRHNGGRALARTAPNDYTTELPSKVYSMAFNNALSHQYKSGKLFVI 168
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Nematostella
Match: EDO48542 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RJ96])

HSP 1 Score: 123.25 bits (308), Expect = 1.310e-32
Identity = 75/210 (35.71%), Postives = 118/210 (56.19%), Query Frame = 2 
Query:  233 QAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNSTDEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKL 862
             AW+ + K  DD+ LG ++L+  VFG  PR+D+++  + WQ   R      +  R EV   G+K WPQKG  +AR G   AP F GG  V GP  PR+Y   LP  VR +GL   LS++L Q +LHIV+  +   DD++ L+ +++ R W  +VL   S +E    + +  + +    V  +  VNV+S++    +IL+L ++  +EE+L
Sbjct:   85 HAWVTSFK--DDKSLGMIELNDFVFGENPRIDILHRVVVWQRAKRRAGTACVKDRSEVRGGGRKPWPQKGLNKARQGSIRAPHFRGGGVVHGP-KPRSYEYTLPKKVRRMGLRVALSVRLAQGDLHIVESFDDIEDDQD-LMPILDQRGWQSAVLVDGSPNE---RLFEAAADLDKVDVFYSENVNVYSILLRHNLILSLDAVKQLEERL 287
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Nematostella
Match: EDO25703 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A8DVQ5])

HSP 1 Score: 58.9214 bits (141), Expect = 3.004e-10
Identity = 46/191 (24.08%), Postives = 88/191 (46.07%), Query Frame = 2 
Query:  284 LDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNW-GKSVLFVNSTDEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIE 853
            ++L  +VFG  P    I L+++     +     K   R E+  + +K+  QKG+G AR G   +  F GG ++ GP  PR Y   L   ++ L   S LS +   +NL +V++ +      +  +N+++      K  LFV    E+  N+      +    V+ A  ++ +S++  + V+    ++  +E
Sbjct:   17 VELSSEVFGIEPNSHAIYLDVKQHLANKRQGTHKSKERAEITGSTRKIKKQKGTGTARAGSIKSGVFRGGGRMFGPR-PRNYSFKLNKNLKRLARKSALSTQAKDNNLVVVENFDFDAPKTKNFVNVLKALGLENKKSLFV--LAESNNNVYLSSRNLKSSKVVNASELSTYSVLNANKVVFMEGAIEGVE 204
[Close]
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Medaka
Match: mrpl4 (mitochondrial ribosomal protein L4 [Source:NCBI gene;Acc:101158165])

HSP 1 Score: 198.364 bits (503), Expect = 1.410e-60
Identity = 110/289 (38.06%), Postives = 165/289 (57.09%), Query Frame = 2 
Query:   59 KILSIFRSLNTSLVIFNQNTNENDNYEEPCD--LPP--------VIPSIVKRNLLESV----------SCSNTDVKPKQAWLETLKCPDDRKLGFLDLHPDVFGAFPRLDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNSTDEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLI 865
            K + +FR    S+ +F +   +  +   P +  LPP        V PS +KR    +           +     + P Q W+E+L+  D   LG  +LHPDVFG  PR+D+++   +WQ  Y+ + +     R EV   GKK W QKGSGRARHG   +P + GG    GP GP +Y+ +LP+ VR+ GL   LS K+ QD LH+VD L++PT D +YL++LI  R+WG+SVL V+  +E P NI +  S +    +IPA  +NV S++K++ V+LTL +L  +E+KL+
Sbjct:    8 KFIEMFR---FSVAVFGRGVAKRFSSSFPAEGALPPNLQLPANLVDPSRLKRPPPPADCPLPLLRRCEAVVPAHLSPMQTWVESLQMEDGEPLGRAELHPDVFGVSPRIDILHDVEKWQRNYKRISYAHTKVRSEVRGGGKKPWRQKGSGRARHGSIRSPLWRGGGVSHGPRGPTSYYYMLPMKVRVQGLKVALSFKMAQDYLHVVDSLHIPTPDSQYLLDLIRRRHWGESVLIVDVAEEFPENILQAASDLKKVNLIPAIGLNVHSMLKHEAVVLTLETLKFLEDKLL 293
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BLAST of Mitochondrial ribosomal protein L4 vs. Planmine SMEST
Match: SMESG000041898.1 (SMESG000041898.1)

HSP 1 Score: 405.216 bits (1040), Expect = 1.301e-143
Identity = 195/196 (99.49%), Postives = 196/196 (100.00%), Query Frame = 2 
Query:  425 MWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNSTDEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLIVSLKNPAVDMKSTRSFQHFRHSNHDSWDQRQNTNFRGNPATHDDYLEYQ 1012
            MWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNSTDEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLIV+LKNPAVDMKSTRSFQHFRHSNHDSWDQRQNTNFRGNPATHDDYLEYQ
Sbjct:    1 MWPQKGSGRARHGDRTAPQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDDLNLPTDDKEYLINLIEGRNWGKSVLFVNSTDEAPRNISKICSLIPHYMVIPAYAVNVWSLIKYDTVILTLPSLNIIEEKLIVNLKNPAVDMKSTRSFQHFRHSNHDSWDQRQNTNFRGNPATHDDYLEYQ 196
The following BLAST results are available for this feature:
BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
MRPL48.749e-6344.95mitochondrial ribosomal protein L4 [Source:HGNC Sy... [more]
MRPL41.141e-6244.95mitochondrial ribosomal protein L4 [Source:HGNC Sy... [more]
MRPL41.141e-6244.95mitochondrial ribosomal protein L4 [Source:HGNC Sy... [more]
MRPL41.622e-5245.50mitochondrial ribosomal protein L4 [Source:HGNC Sy... [more]
MRPL45.199e-5245.08mitochondrial ribosomal protein L4 [Source:HGNC Sy... [more]
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BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrpl-45.872e-6044.14Mitochondrial Ribosomal Protein, Large [Source:Un... [more]
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BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mRpL41.073e-6645.58gene:FBgn0001995 transcript:FBtr0080843[more]
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BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
mrpl41.437e-5644.13mitochondrial ribosomal protein L4 [Source:NCBI ge... [more]
mrpl41.522e-5644.13mitochondrial ribosomal protein L4 [Source:NCBI ge... [more]
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BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
mrpl47.067e-5742.40mitochondrial ribosomal protein L4 [Source:NCBI ge... [more]
mrpl44.398e-4740.69mitochondrial ribosomal protein L4 [Source:NCBI ge... [more]
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BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Mrpl41.248e-6438.30mitochondrial ribosomal protein L4 [Source:MGI Sym... [more]
Mrpl44.471e-4332.36mitochondrial ribosomal protein L4 [Source:MGI Sym... [more]
Mrpl42.333e-4135.40mitochondrial ribosomal protein L4 [Source:MGI Sym... [more]
Mrpl41.219e-2030.82mitochondrial ribosomal protein L4 [Source:MGI Sym... [more]
Mrpl41.333e-2031.21mitochondrial ribosomal protein L4 [Source:MGI Sym... [more]
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BLAST of Mitochondrial ribosomal protein L4 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9DCU6|RM04_MOUSE8.726e-6438.3039S ribosomal protein L4, mitochondrial OS=Mus mus... [more]
sp|Q9BYD3|RM04_HUMAN5.479e-6244.9539S ribosomal protein L4, mitochondrial OS=Homo sa... [more]
sp|Q32PI6|RM04_BOVIN2.881e-6044.6539S ribosomal protein L4, mitochondrial OS=Bos tau... [more]
sp|Q503X2|RM04_DANRE1.084e-5544.1339S ribosomal protein L4, mitochondrial OS=Danio r... [more]
sp|Q6G2W6|RL4_BARHE1.844e-3232.8450S ribosomal protein L4 OS=Bartonella henselae (s... [more]
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BLAST of Mitochondrial ribosomal protein L4 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0V0G7Z91.203e-7650.93Putative mitochondrial 39s ribosomal protein l4 OS... [more]
A0A171BA107.002e-7651.3939s ribosomal protein mitochondrial (Fragment) OS=... [more]
A0A023F7M61.841e-7550.93Putative mitochondrial/ ribosomal protein l4 OS=Tr... [more]
A0A069DS054.240e-7550.00Putative mitochondrial 39s ribosomal protein l4 OS... [more]
A0A224XL404.669e-7549.54Putative mitochondrial/ ribosomal protein l4 OS=Pa... [more]
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BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrpl42.567e-5843.72mitochondrial ribosomal protein L4 [Source:NCBI ge... [more]
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BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrpl41.880e-6345.75mitochondrial ribosomal protein L4 [Source:NCBI ge... [more]
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BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
YML63.039e-727.14Mitochondrial ribosomal protein of the large subun... [more]
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BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO485421.310e-3235.71Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO257033.004e-1024.08Predicted protein [Source:UniProtKB/TrEMBL;Acc:A8... [more]
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BLAST of Mitochondrial ribosomal protein L4 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrpl41.410e-6038.06mitochondrial ribosomal protein L4 [Source:NCBI ge... [more]
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BLAST of Mitochondrial ribosomal protein L4 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000041898.11.301e-14399.49SMESG000041898.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30027556 ID=SMED30027556|Name=Mitochondrial ribosomal protein L4|organism=Schmidtea mediterranea sexual|type=transcript|length=1105bp
CATATTTTAGCGGGCTTTATAAATGATAAAAATATTCAAATTAAGTAATC
GTGAATTTAAAATTTTATCTATCTTTCGGTCTTTGAATACCTCATTAGTA
ATTTTCAATCAAAACACTAATGAAAATGACAATTACGAAGAGCCTTGTGA
CTTACCACCCGTCATACCTTCCATAGTAAAACGCAATCTTTTGGAATCAG
TTTCTTGTTCAAATACAGATGTTAAACCCAAACAAGCTTGGTTAGAAACC
CTCAAATGTCCTGACGATCGAAAGTTAGGATTTCTAGATCTTCATCCTGA
CGTTTTTGGAGCTTTTCCACGATTGGATTTAATTAATCTAAATTTACGTT
GGCAAGGAGTTTATAGATTTGTTGATTGGCGAAAAATTACCACTCGTCCA
GAAGTAGAGAGAACTGGAAAAAAAATGTGGCCTCAAAAAGGGTCCGGAAG
AGCTCGACATGGAGATCGAACTGCTCCTCAGTTTATCGGTGGGGCTCAAG
TTAAAGGACCTCTTGGACCACGTGCATATTTTTCAGTTCTTCCAATTGGT
GTTAGACTCCTTGGATTAACATCGACTTTGTCAATAAAATTATTTCAAGA
TAATCTACATATTGTTGATGATTTGAACTTACCAACTGATGATAAGGAAT
ATTTGATAAATTTGATTGAAGGCCGGAATTGGGGGAAATCAGTTTTATTT
GTAAACAGCACCGATGAAGCTCCTCGGAACATTTCCAAAATCTGCTCCCT
GATCCCGCACTATATGGTAATACCGGCATATGCTGTAAATGTGTGGAGCT
TGATAAAATATGATACCGTAATTCTCACTTTGCCGTCATTGAATATTATC
GAAGAGAAATTGATAGTTAGCCTCAAGAATCCGGCTGTCGACATGAAGTC
GACTAGGAGCTTTCAACATTTCCGACATTCGAATCACGATTCTTGGGATC
AACGACAAAATACCAATTTCCGAGGGAATCCTGCAACTCATGATGACTAC
CTGGAATATCAATGATCCCTCGATACACTTATTATCTGTTACTTGTGGTG
CAATCCTGCATTTGATCAATTGAATATGTTTTCATTTAATAAAACAAATT
TCTAG
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protein sequence of SMED30027556-orf-1

>SMED30027556-orf-1 ID=SMED30027556-orf-1|Name=SMED30027556-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=331bp
MIKIFKLSNREFKILSIFRSLNTSLVIFNQNTNENDNYEEPCDLPPVIPS
IVKRNLLESVSCSNTDVKPKQAWLETLKCPDDRKLGFLDLHPDVFGAFPR
LDLINLNLRWQGVYRFVDWRKITTRPEVERTGKKMWPQKGSGRARHGDRT
APQFIGGAQVKGPLGPRAYFSVLPIGVRLLGLTSTLSIKLFQDNLHIVDD
LNLPTDDKEYLINLIEGRNWGKSVLFVNSTDEAPRNISKICSLIPHYMVI
PAYAVNVWSLIKYDTVILTLPSLNIIEEKLIVSLKNPAVDMKSTRSFQHF
RHSNHDSWDQRQNTNFRGNPATHDDYLEYQ*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR013005Ribosomal_uL4/L1e
IPR023574Ribosomal_L4_dom_sf
IPR002136Ribosomal_L4/L1e
Vocabulary: biological process
TermDefinition
GO:0006412translation
Vocabulary: molecular function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: cellular component
TermDefinition
GO:0005840ribosome
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002136Ribosomal protein L4/L1ePFAMPF00573Ribosomal_L4coord: 88..278
e-value: 1.0E-36
score: 126.5
IPR023574Ribosomal protein L4 domain superfamilyGENE3DG3DSA:3.40.1370.10coord: 52..299
e-value: 1.9E-60
score: 205.9
IPR023574Ribosomal protein L4 domain superfamilySUPERFAMILYSSF52166Ribosomal protein L4coord: 80..280
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 302..321
NoneNo IPR availablePANTHERPTHR10746:SF639S RIBOSOMAL PROTEIN L4, MITOCHONDRIALcoord: 64..287
IPR01300550S ribosomal protein uL4PANTHERPTHR1074650S RIBOSOMAL PROTEIN L4coord: 64..287