SMED30027498

Overview
NameSMED30027498
Smed IDSMED30027498
Length (bp)1757
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30027498 (SMED30027498) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30027498 (SMED30027498) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30027498 (SMED30027498) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30027498 (SMED30027498) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30027498

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30027498SMESG000003505.1 dd_Smed_v4_2222_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30027498SMESG000003505.1 dd_Smed_v4_2222_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30027498SMESG000003505.1 dd_Smed_v4_2222_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027498SMESG000003505.1 dd_Smed_v4_2222_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30027498SMESG000003505.1 dd_Smed_v4_2222_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027498SMESG000003492.1 SMESG000003504.1 SMESG000003505.1 dd_Smed_v6_2222_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30027498 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.003327:24406..27926 +7330
v31.001421:22738..26253 -7045
v31.002469:47365..56538 -5897
v31.002872:20286..29091 +5870
v31.001421:32082..33759 +2855
Homology
[Close]
BLAST of SMED30027498 vs. Planmine SMEST
Match: SMESG000003505.1 (SMESG000003505.1)

HSP 1 Score: 355.91 bits (912), Expect = 6.445e-120
Identity = 191/211 (90.52%), Postives = 192/211 (91.00%), Query Frame = 2 
Query:  326 MIKCNFAMISKQIY*LLYFINDFVLVRILRISSRYLIGEIEGEFRNDVTIGIRIGFSRISDKYLMHTIDANQNKLSIKTSKSFASDSKLILNFNGATRAFKYWGFVAAFHLYIRLEFRANSLYADKWPSDELXXXXXXXXXXXXRAVTENDWPAAGDMSNRMKIWLGYDHDWISKSHSNWPTNQIIGCVELIDVNEKSIIFVKHGNDFYLD 958
            MIKCNFAMI              +LV I  ISS YLIGEIEGEFRNDVTIGIRIGFSRISDKYLMHTIDANQNKLSIKTSKSFASDSKLILNFNGATRAFKYWGFVAAFHLYIRLEFRANSLYA KWPSDELIISNISYSSISSRAVTENDWPAAGDMSNRMKIWLGYDHDWISKSHSNWPTNQIIGCVELIDVNEKSIIFVKHGNDFYLD
Sbjct:    1 MIKCNFAMI--------------ILVNIFGISSSYLIGEIEGEFRNDVTIGIRIGFSRISDKYLMHTIDANQNKLSIKTSKSFASDSKLILNFNGATRAFKYWGFVAAFHLYIRLEFRANSLYAAKWPSDELIISNISYSSISSRAVTENDWPAAGDMSNRMKIWLGYDHDWISKSHSNWPTNQIIGCVELIDVNEKSIIFVKHGNDFYLD 197
[Close]
BLAST of SMED30027498 vs. Planmine SMEST
Match: SMESG000003505.1 (SMESG000003505.1)

HSP 1 Score: 346.28 bits (887), Expect = 2.801e-116
Identity = 182/188 (96.81%), Postives = 183/188 (97.34%), Query Frame = 2 
Query:  395 VLVRILRISSRYLIGEIEGEFRNDVTIGIRIGFSRISDKYLMHTIDANQNKLSIKTSKSFASDSKLILNFNGATRAFKYWGFVAAFHLYIRLEFRANSLYADKWPSDELXXXXXXXXXXXXRAVTENDWPAAGDMSNRMKIWLGYDHDWISKSHSNWPTNQIIGCVELIDVNEKSIIFVKHGNDFYLD 958
            +LV I  ISS YLIGEIEGEFRNDVTIGIRIGFSRISDKYLMHTIDANQNKLSIKTSKSFASDSKLILNFNGATRAFKYWGFVAAFHLYIRLEFRANSLYA KWPSDELIISNISYSSISSRAVTENDWPAAGDMSNRMKIWLGYDHDWISKSHSNWPTNQIIGCVELIDVNEKSIIFVKHGNDFYLD
Sbjct:    3 ILVNIFGISSSYLIGEIEGEFRNDVTIGIRIGFSRISDKYLMHTIDANQNKLSIKTSKSFASDSKLILNFNGATRAFKYWGFVAAFHLYIRLEFRANSLYAAKWPSDELIISNISYSSISSRAVTENDWPAAGDMSNRMKIWLGYDHDWISKSHSNWPTNQIIGCVELIDVNEKSIIFVKHGNDFYLD 190
[Close]
BLAST of SMED30027498 vs. Planmine SMEST
Match: SMESG000003492.1 (SMESG000003492.1)

HSP 1 Score: 323.168 bits (827), Expect = 8.551e-104
Identity = 179/211 (84.83%), Postives = 185/211 (87.68%), Query Frame = 2 
Query:  326 MIKCNFAMISKQIY*LLYFINDFVLVRILRISSRYLIGEIEGEFRNDVTIGIRIGFSRISDKYLMHTIDANQNKLSIKTSKSFASDSKLILNFNGATRAFKYWGFVAAFHLYIRLEFRANSLYADKWPSDELXXXXXXXXXXXXRAVTENDWPAAGDMSNRMKIWLGYDHDWISKSHSNWPTNQIIGCVELIDVNEKSIIFVKHGNDFYLD 958
            MIKCNFA+ISKQIY  LYFIN+ VLV I  ISS YLIGEIEGEFRNDVTIGIRIGFSRISDKYL+H IDANQNKLSIKTSKSFASDSKLILNFNGATRAFK             LE   NSLYA KWPSDELIISNISYSSI+SR+VTENDWPAAGDMSNRMKIWLGYDHDWISKSHSNWPTNQIIGCVELIDVN KSIIFVKHGNDFY+D
Sbjct:    1 MIKCNFALISKQIY-YLYFINNLVLVSIFGISSSYLIGEIEGEFRNDVTIGIRIGFSRISDKYLLHAIDANQNKLSIKTSKSFASDSKLILNFNGATRAFKC------------LE---NSLYAAKWPSDELIISNISYSSINSRSVTENDWPAAGDMSNRMKIWLGYDHDWISKSHSNWPTNQIIGCVELIDVNGKSIIFVKHGNDFYMD 195

HSP 2 Score: 146.747 bits (369), Expect = 9.488e-38
Identity = 71/86 (82.56%), Postives = 74/86 (86.05%), Query Frame = 2 
Query:  902 DVNEKSIIFVKHGNDFYLDRISNGYFIKTRMLPNQFRVETINIGWNSNPYLCQPIRGKFGIQLNSNLKSAVKWDASRCPKVPQINA 1159
            DV+  S+ F+ H       RISNGYFIKTRMLPN FRVETINIGWNSNPYLCQPIRGKFGIQLNSNLKSAVKWDASRCPKVPQINA
Sbjct:  317 DVHALSMGFIDHKLTI---RISNGYFIKTRMLPNHFRVETINIGWNSNPYLCQPIRGKFGIQLNSNLKSAVKWDASRCPKVPQINA 399

HSP 3 Score: 137.502 bits (345), Expect = 1.337e-34
Identity = 70/93 (75.27%), Postives = 77/93 (82.80%), Query Frame = 3 
Query: 1479 FLSPFLWCSIIINISLMFILLLIIGKRIIDHWRHKELASQNSNVYEEQQQDLNELNLKSLAIHRLGIGENVDGGHRGTANVTNSASDPQDETN 1757
            FL+PFLW SIIINI+LM ILLLIIGKRIIDH   KE+  +NSNVYE+Q Q+L  +NL SLAI RLGIGENVDGGHR TANVT  ASDPQDE N
Sbjct:  412 FLNPFLWSSIIINIALMSILLLIIGKRIIDHRHRKEITRRNSNVYEQQMQELIGINLTSLAIQRLGIGENVDGGHRRTANVTIIASDPQDEAN 504
[Close]
BLAST of SMED30027498 vs. Planmine SMEST
Match: SMESG000003492.1 (SMESG000003492.1)

HSP 1 Score: 297.745 bits (761), Expect = 3.852e-94
Identity = 168/211 (79.62%), Postives = 174/211 (82.46%), Query Frame = 2 
Query:  326 MIKCNFAMISKQIY*LLYFINDFVLVRILRISSRYLIGEIEGEFRNDVTIGIRIGFSRISDKYLMHTIDANQNKLSIKTSKSFASDSKLILNFNGATRAFKYWGFVAAFHLYIRLEFRANSLYADKWPSDELXXXXXXXXXXXXRAVTENDWPAAGDMSNRMKIWLGYDHDWISKSHSNWPTNQIIGCVELIDVNEKSIIFVKHGNDFYLD 958
            MIKCNFA+I              +LV I  ISS YLIGEIEGEFRNDVTIGIRIGFSRISDKYL+H IDANQNKLSIKTSKSFASDSKLILNFNGATRAFK             LE   NSLYA KWPSDELIISNISYSSI+SR+VTENDWPAAGDMSNRMKIWLGYDHDWISKSHSNWPTNQIIGCVELIDVN KSIIFVKHGNDFY+D
Sbjct:    1 MIKCNFALI--------------ILVSIFGISSSYLIGEIEGEFRNDVTIGIRIGFSRISDKYLLHAIDANQNKLSIKTSKSFASDSKLILNFNGATRAFKC------------LE---NSLYAAKWPSDELIISNISYSSINSRSVTENDWPAAGDMSNRMKIWLGYDHDWISKSHSNWPTNQIIGCVELIDVNGKSIIFVKHGNDFYMD 182

HSP 2 Score: 146.747 bits (369), Expect = 8.318e-38
Identity = 71/86 (82.56%), Postives = 74/86 (86.05%), Query Frame = 2 
Query:  902 DVNEKSIIFVKHGNDFYLDRISNGYFIKTRMLPNQFRVETINIGWNSNPYLCQPIRGKFGIQLNSNLKSAVKWDASRCPKVPQINA 1159
            DV+  S+ F+ H       RISNGYFIKTRMLPN FRVETINIGWNSNPYLCQPIRGKFGIQLNSNLKSAVKWDASRCPKVPQINA
Sbjct:  304 DVHALSMGFIDHKLTI---RISNGYFIKTRMLPNHFRVETINIGWNSNPYLCQPIRGKFGIQLNSNLKSAVKWDASRCPKVPQINA 386

HSP 3 Score: 137.502 bits (345), Expect = 1.291e-34
Identity = 70/93 (75.27%), Postives = 77/93 (82.80%), Query Frame = 3 
Query: 1479 FLSPFLWCSIIINISLMFILLLIIGKRIIDHWRHKELASQNSNVYEEQQQDLNELNLKSLAIHRLGIGENVDGGHRGTANVTNSASDPQDETN 1757
            FL+PFLW SIIINI+LM ILLLIIGKRIIDH   KE+  +NSNVYE+Q Q+L  +NL SLAI RLGIGENVDGGHR TANVT  ASDPQDE N
Sbjct:  399 FLNPFLWSSIIINIALMSILLLIIGKRIIDHRHRKEITRRNSNVYEQQMQELIGINLTSLAIQRLGIGENVDGGHRRTANVTIIASDPQDEAN 491
[Close]
BLAST of SMED30027498 vs. Planmine SMEST
Match: SMESG000003492.1 (SMESG000003492.1)

HSP 1 Score: 280.026 bits (715), Expect = 3.430e-89
Identity = 149/211 (70.62%), Postives = 153/211 (72.51%), Query Frame = 2 
Query:  326 MIKCNFAMISKQIY*LLYFINDFVLVRILRISSRYLIGEIEGEFRNDVTIGIRIGFSRISDKYLMHTIDANQNKLSIKTSKSFASDSKLILNFNGATRAFKYWGFVAAFHLYIRLEFRANSLYADKWPSDELXXXXXXXXXXXXRAVTENDWPAAGDMSNRMKIWLGYDHDWISKSHSNWPTNQIIGCVELIDVNEKSIIFVKHGNDFYLD 958
            MIKCNFA+ISKQIY  LYFIN+ VLV I  ISS YLIGEIEGEFRNDVTIGIRIGFSRISDKYL+H IDANQNKLSIKTSKSFASDSKLILNFNGATRAFKYW                                                 PAAGDMSNRMKIWLGYDHDWISKSHSNWPTNQIIGCVELIDVN KSIIFVKHGNDFY+D
Sbjct:    1 MIKCNFALISKQIY-YLYFINNLVLVSIFGISSSYLIGEIEGEFRNDVTIGIRIGFSRISDKYLLHAIDANQNKLSIKTSKSFASDSKLILNFNGATRAFKYW-------------------------------------------------PAAGDMSNRMKIWLGYDHDWISKSHSNWPTNQIIGCVELIDVNGKSIIFVKHGNDFYMD 161

HSP 2 Score: 93.2041 bits (230), Expect = 2.009e-20
Identity = 45/60 (75.00%), Postives = 48/60 (80.00%), Query Frame = 2 
Query:  902 DVNEKSIIFVKHGNDFYLDRISNGYFIKTRMLPNQFRVETINIGWNSNPYLCQPIRGKFG 1081
            DV+  S+ F+ H       RISNGYFIKTRMLPN FRVETINIGWNSNPYLCQPIRGKFG
Sbjct:  283 DVHALSMGFIDHKLTI---RISNGYFIKTRMLPNHFRVETINIGWNSNPYLCQPIRGKFG 339
The following BLAST results are available for this feature:
BLAST of SMED30027498 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027498 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027498 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027498 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027498 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027498 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027498 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027498 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027498 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027498 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027498 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027498 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027498 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027498 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000003505.16.445e-12090.52SMESG000003505.1[more]
SMESG000003505.12.801e-11696.81SMESG000003505.1[more]
SMESG000003492.18.551e-10484.83SMESG000003492.1[more]
SMESG000003492.13.852e-9479.62SMESG000003492.1[more]
SMESG000003492.13.430e-8970.62SMESG000003492.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30027498 ID=SMED30027498|Name=SMED30027498|organism=Schmidtea mediterranea sexual|type=transcript|length=1757bp
CAATTTTCTATAATTGATTTTCTATATTTCCTATAATTTTTAAAATTAAT
TACATTTGTAAACTTTATGGGAAATTCTGTATATTATAGAATCAATAATA
AAAGGAGAGAAAGTAAAAGAGAAGAGATAAAAATAATCACGGAATGAAAT
CATTGATATTTATAGAATATTTGTATTAAACATTTGCATTGCATTTGTCA
ATCTTAATAAATGCAAGCTTGTAGGAAATTGATTATTTGTCTGTTTTTTA
TTGCGGTATTTATGTCGGTGTTTTCGCTGTGAATTTTCATTTGTGAAACA
TTTCATTCTATTTACATCAATCGATATGATAAAATGCAATTTTGCAATGA
TTAGTAAGCAAATTTATTGATTATTATATTTTATAAATGATTTTGTTTTG
GTGAGAATTTTGAGGATATCATCGAGATATCTGATTGGTGAAATCGAGGG
AGAATTTAGGAATGATGTGACAATCGGAATCAGAATTGGATTCAGTCGGA
TTTCTGATAAATATTTGATGCATACAATCGATGCAAATCAAAACAAATTG
TCAATTAAAACAAGCAAATCATTTGCTAGTGACAGCAAATTAATATTAAA
TTTCAATGGTGCAACTAGAGCTTTCAAATATTGGGGATTTGTGGCAGCAT
TTCATCTGTATATTCGTTTGGAATTCAGGGCAAACAGTTTATATGCAGAC
AAATGGCCATCAGATGAATTGATTATATCAAATATATCCTACAGCAGCAT
TAGCAGTAGAGCAGTGACGGAAAATGATTGGCCAGCTGCTGGCGATATGA
GCAATCGGATGAAGATTTGGTTGGGATATGATCACGATTGGATAAGTAAA
TCACATTCCAATTGGCCCACAAATCAAATTATTGGATGCGTTGAACTGAT
TGATGTCAATGAGAAATCAATAATATTTGTCAAGCACGGAAATGATTTCT
ACTTGGATCGGATATCAAATGGATATTTTATCAAGACGCGAATGTTACCC
AATCAATTCAGAGTTGAAACTATTAATATCGGATGGAATTCTAATCCATA
TCTGTGTCAACCAATCAGAGGAAAATTCGGCATTCAACTCAATTCCAATT
TGAAATCAGCTGTTAAATGGGATGCATCTAGATGTCCAAAGGTGCCACAA
ATAAATGCAACTCAAGTAATATTTATTTCTGATTGGCTCACGTTATATAA
ATTCCGTTTCATGCAATAAATTCATTGGATAATTAAATGCGGTTGGCATC
AATCAAATAATTTCTGTCGTAATTATTACTAAATTTCCACGAGCTTGAAA
CGCACAAAATGTGTTTTATTGACATTTCCACATTGAAGTTATCAAATATG
AACATGATATGTGGTCAGTCATAGTGGTAAACCATAGAGAATATTTCTGA
TTTCTCTATGGATTTCTATTGCAAATGTTTATCATCAGTTCATTTCTCTA
CTTTTTTCATTTGATCATTTATATTTAGTTTTTGAGTCCTTTCTTGTGGT
GCTCAATAATAATCAATATTTCACTAATGTTTATTCTATTATTGATCATT
GGCAAACGGATCATTGATCACTGGCGCCACAAGGAACTCGCCAGTCAGAA
CTCAAATGTTTATGAAGAACAACAGCAAGACCTCAATGAACTCAATCTCA
AATCGCTTGCCATTCATAGGTTAGGCATTGGTGAGAATGTTGATGGGGGG
CACCGCGGAACCGCCAATGTTACCAATTCAGCTTCAGATCCACAGGATGA
GACAAAT
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protein sequence of SMED30027498-orf-1

>SMED30027498-orf-1 ID=SMED30027498-orf-1|Name=SMED30027498-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=234bp
MHTIDANQNKLSIKTSKSFASDSKLILNFNGATRAFKYWGFVAAFHLYIR
LEFRANSLYADKWPSDELIISNISYSSISSRAVTENDWPAAGDMSNRMKI
WLGYDHDWISKSHSNWPTNQIIGCVELIDVNEKSIIFVKHGNDFYLDRIS
NGYFIKTRMLPNQFRVETINIGWNSNPYLCQPIRGKFGIQLNSNLKSAVK
WDASRCPKVPQINATQVIFISDWLTLYKFRFMQ*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0003116parenchymal cell