SMED30027455

Overview
NameSMED30027455
Smed IDSMED30027455
Length (bp)3080
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30027455 (SMED30027455) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30027455 (SMED30027455) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30027455 (SMED30027455) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30027455 (SMED30027455) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30027455

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 15

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30027455h1SMcG0017901 SmedASXL_006037SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
head regionSMED30027455h1SMcG0017901 SmedASXL_012359SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30027455h1SMcG0017901 Contig55890newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027455h1SMcG0017901 Contig55890uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027455h1SMcG0017901 Contig45084newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027455h1SMcG0017901 Contig45084uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
nervous systemSMED30027455h1SMcG0017901 dd_Smed_v4_17076_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30027455h1SMcG0017901 dd_Smed_v4_17076_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30027455h1SMcG0017901 dd_Smed_v4_17076_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
non-ciliated neuronSMED30027455h1SMcG0017901 dd_Smed_v4_17076_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30027455h1SMcG0017901 dd_Smed_v6_17076_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
oocyteSMED30027455h1SMcG0017901 Contig45084newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
oocyteSMED30027455h1SMcG0017901 Contig45084uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
vitelline glandSMED30027455h1SMcG0017901 Contig45084newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
vitelline glandSMED30027455h1SMcG0017901 Contig45084uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of SMED30027455 vs. Planmine SMEST
Match: SMESG000063750.1 (SMESG000063750.1)

HSP 1 Score: 1479.54 bits (3829), Expect = 0.000e+0
Identity = 811/812 (99.88%), Postives = 812/812 (100.00%), Query Frame = 3 
Query:  189 MKTDKIPNVPNAPQSTPIPPVKNEQNLIKHYFPXXXXXXXXXXXXXXFDFPLFLPEEIQMKIIKEVESNLIKFYFPGWIYGCRLCYGCQMSQKIHIHKDKSMRAGGGFAYRKTDLWNIKNAAFLRRPLNSNEMIVELPEKIENEIKRWTMEILEKVNKYNKKPKRQTGYLYRKKGFKFRTKASSLNRVTFGAESYENQIISPYAEKPKIKEVYQKNTIEIKRSQPVMHTFHLVPGDLEEFETKYSSFPGCQAPESFKNRFHKKENNAKTKETLTNFSINELWFENSEPDSHDNQKKVQDEELLVYRLQNDLEIEDFSQESQEINEESLKSFADVSEDAKENENGTSPVDDKTWLAENFGIEPSDYGIGTKHILNYRQAFQKRIPSFIKLPIIYDNESSEFGVGELTESMPKENYILTQPIGEQKSEIVYDNIYQADSFDDPLNDVHETESDTFGDIDYIKSTENSSIQMQKLISKIDSKDIENLNNSDNDNLGQTHSKSFSQINLIKEKSRSFLPKISTSVLXXXXXXXXXXXXXXXLKREDSLAKSDSEIHSILSKSRNSYLSGENSFIFDRDEESLSINLQEDLSLKSDSEKSVVNETLKEKRKKIKTMLKQTKMRMSNKKFIAKKENPLTTGDLGQLYEPLDFLSKYCIIHEHRLPAYENVFQSVLESQKTENPSRSSTMDXXXXXXXXXXXXXXXXXXXXXTKREESFLRKDVIYNRINYQPPPGQNYTXXXXXXXXXXXXNLLEKREELKNIYDNSQDSLENEIAMKIKEKYPKVVEKLKYSKSEESAISNKEIVKKIDSLIRKKVS 2624
            MKTDKIPNVPNAPQSTPIPPVKNEQNLIKHYFPEETNKKEAKIKEKKFDFPLFLPEEIQMKIIKEVESNLIKFYFPGWIYGCRLCYGCQMSQKIHIHKDKSMRAGGGFAYRKTDLWNIKNAAFLRRPLNSNEMIVELPEKIENEIKRWTMEILEKVNKYNKKPKRQTGYLYRKKGFKFRTKASSLNRVTFGAESYENQIISPYAEKPKIKEVYQKNTIEIKRSQPVMHTFHLVPGDLEEFETKYSSFPGCQAPESFKNRFHKKENNAKTKETLTNFSINELWFENSEPDSHDNQKKVQDEELLVYRLQNDLEIEDFSQESQEINEESLKSFADVSEDAKENENGTSPVDDKTWLAENFGIEPSDYGIGTKHILNYRQAFQKRIPSFIKLPIIYDNESSEFGVGELTESMPKENYILTQPIGEQKSEIVYDNIYQADSFDDPLNDVHETESDTFGDIDYIKSTENSSIQMQKLISKIDSKDIENLNNSDNDNLGQTHSKSFSQINLIKEKSRSFLPKISTSVLINQNSSSSNFKSKINLKREDSLAKSDSEIHSILSKSRNSYLSGENSFIFDRDEESLSINLQEDLSLKSDSEKSVVNETLKEKRKKIKTMLKQTKMRMSNKKFIAKKENPLTTGDLGQLYEPLDFLSKYCIIHEHRLPAYENVFQSVLESQKTENPSRSSTMDLNVNKTKKRKRNLKKKPVNLLTKREESFLRKDVIYNRINYQPPPGQNYTEIEIQKIKFQIQNLLEKREELKNIYDNSQDSLENEIAMKIKEKYPKVVEKLKYSKSEESAISNKEIVKKIDSLIRKK+S
Sbjct:    1 MKTDKIPNVPNAPQSTPIPPVKNEQNLIKHYFPEETNKKEAKIKEKKFDFPLFLPEEIQMKIIKEVESNLIKFYFPGWIYGCRLCYGCQMSQKIHIHKDKSMRAGGGFAYRKTDLWNIKNAAFLRRPLNSNEMIVELPEKIENEIKRWTMEILEKVNKYNKKPKRQTGYLYRKKGFKFRTKASSLNRVTFGAESYENQIISPYAEKPKIKEVYQKNTIEIKRSQPVMHTFHLVPGDLEEFETKYSSFPGCQAPESFKNRFHKKENNAKTKETLTNFSINELWFENSEPDSHDNQKKVQDEELLVYRLQNDLEIEDFSQESQEINEESLKSFADVSEDAKENENGTSPVDDKTWLAENFGIEPSDYGIGTKHILNYRQAFQKRIPSFIKLPIIYDNESSEFGVGELTESMPKENYILTQPIGEQKSEIVYDNIYQADSFDDPLNDVHETESDTFGDIDYIKSTENSSIQMQKLISKIDSKDIENLNNSDNDNLGQTHSKSFSQINLIKEKSRSFLPKISTSVLINQNSSSSNFKSKINLKREDSLAKSDSEIHSILSKSRNSYLSGENSFIFDRDEESLSINLQEDLSLKSDSEKSVVNETLKEKRKKIKTMLKQTKMRMSNKKFIAKKENPLTTGDLGQLYEPLDFLSKYCIIHEHRLPAYENVFQSVLESQKTENPSRSSTMDLNVNKTKKRKRNLKKKPVNLLTKREESFLRKDVIYNRINYQPPPGQNYTEIEIQKIKFQIQNLLEKREELKNIYDNSQDSLENEIAMKIKEKYPKVVEKLKYSKSEESAISNKEIVKKIDSLIRKKIS 812
The following BLAST results are available for this feature:
BLAST of SMED30027455 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027455 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027455 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027455 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027455 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027455 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027455 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027455 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027455 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027455 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027455 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027455 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027455 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027455 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000063750.10.000e+099.88SMESG000063750.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30027455 ID=SMED30027455|Name=SMED30027455|organism=Schmidtea mediterranea sexual|type=transcript|length=3080bp
GACAAATATTGAAAGTTTATTTTCTCTCTCTTCTCTACTGTTACATTTTT
CGTGAGCTTCGAAAAAATTATGTAAACTTTAAATTTTAACCAACAATAAA
ATATTTAAAAAGTAATTTCTGGTGAATTCTCTAGCATTTTATATCCTTAT
TTGTGAAATTTTCTTTCGTGTATAACCATAGTTTACTGATGAAAACCGAC
AAAATTCCTAATGTTCCAAATGCCCCCCAAAGTACTCCAATTCCTCCAGT
AAAAAATGAGCAAAATCTCATCAAACATTATTTTCCTGAAGAGACAAATA
AAAAAGAAGCAAAAATAAAAGAAAAAAAATTCGATTTTCCTTTATTTTTG
CCCGAAGAAATTCAAATGAAAATTATTAAGGAGGTTGAAAGCAATTTAAT
TAAATTTTACTTCCCAGGCTGGATTTATGGATGCAGATTATGCTATGGGT
GCCAAATGTCTCAAAAAATCCATATCCACAAGGATAAATCAATGAGAGCC
GGAGGAGGATTTGCTTATCGTAAAACAGATTTGTGGAACATTAAGAATGC
TGCTTTTCTACGACGACCACTGAATTCAAATGAAATGATCGTCGAATTAC
CGGAAAAAATCGAAAACGAAATTAAAAGATGGACAATGGAAATCCTTGAA
AAAGTCAATAAGTATAATAAAAAACCGAAAAGACAAACTGGATATCTGTA
TCGCAAAAAAGGATTTAAATTTCGTACAAAAGCGTCTAGTTTAAACAGAG
TAACTTTCGGGGCTGAATCATATGAAAATCAAATAATTTCACCATATGCA
GAAAAGCCAAAAATTAAAGAAGTCTATCAGAAAAATACGATAGAAATTAA
AAGATCCCAGCCGGTAATGCATACCTTTCATTTGGTTCCAGGCGACTTAG
AGGAGTTTGAAACGAAATATTCGTCCTTTCCCGGGTGTCAAGCACCAGAG
TCGTTTAAAAACCGTTTCCATAAAAAAGAAAATAATGCAAAGACCAAAGA
AACTTTGACAAATTTTAGTATCAACGAGTTATGGTTTGAGAACAGTGAAC
CGGACTCACATGATAATCAAAAAAAAGTCCAAGACGAAGAACTGCTTGTG
TATAGATTACAAAATGATTTAGAAATTGAAGACTTTTCCCAAGAATCACA
AGAAATCAATGAAGAGAGTCTAAAAAGCTTTGCAGATGTATCAGAAGACG
CTAAGGAAAATGAAAACGGTACTTCTCCTGTTGATGACAAAACTTGGCTG
GCGGAAAATTTTGGAATTGAGCCTTCAGATTATGGAATCGGAACCAAACA
TATTTTAAATTATCGGCAGGCATTTCAAAAAAGAATTCCTAGTTTCATTA
AGTTACCCATTATTTATGACAATGAAAGTAGTGAATTTGGTGTCGGTGAA
TTAACAGAATCAATGCCAAAAGAAAATTACATATTAACTCAACCGATTGG
TGAGCAGAAATCTGAAATTGTATATGATAATATATATCAAGCCGACAGTT
TTGACGATCCTTTGAATGATGTTCACGAAACAGAGTCTGACACTTTCGGC
GATATCGATTACATCAAATCTACAGAAAACAGTTCAATTCAAATGCAAAA
ATTAATTTCCAAGATTGATTCAAAAGATATTGAAAATTTAAACAATTCTG
ATAATGACAATCTCGGTCAAACTCATTCAAAATCGTTTTCCCAAATTAAT
CTTATCAAAGAAAAATCAAGAAGTTTCTTGCCAAAAATATCCACAAGTGT
TTTAATAAATCAAAATAGCAGTTCAAGTAATTTTAAATCGAAGATAAATT
TAAAAAGAGAAGATTCACTAGCCAAATCAGATTCCGAGATTCATTCGATT
TTGAGCAAGTCCAGAAACAGCTATCTTTCTGGAGAAAATAGTTTCATATT
TGATAGGGATGAAGAATCGCTGAGTATAAATCTCCAGGAAGACTTGTCAT
TAAAATCTGATTCAGAAAAATCAGTCGTAAATGAAACTTTAAAAGAAAAG
AGAAAGAAAATAAAAACTATGTTAAAACAAACAAAAATGAGAATGTCCAA
CAAAAAGTTTATTGCAAAGAAAGAGAATCCATTAACAACTGGAGATTTAG
GACAACTTTATGAGCCGCTTGATTTTCTGTCAAAATATTGCATCATTCAT
GAGCATCGTCTTCCAGCATACGAGAATGTTTTTCAAAGTGTTTTAGAAAG
TCAAAAAACTGAAAATCCAAGTCGCAGTTCTACAATGGACTTAAATGTAA
ATAAAACGAAAAAGCGTAAACGGAATTTAAAGAAAAAACCGGTAAATCTC
CTTACTAAAAGGGAAGAAAGCTTTCTGCGAAAAGATGTGATATATAATCG
CATAAATTATCAACCTCCGCCGGGTCAAAATTATACAGAAATTGAAATAC
AAAAAATAAAATTTCAAATCCAAAATCTTCTAGAAAAAAGAGAGGAACTG
AAAAATATTTATGATAATTCTCAAGATTCGCTCGAAAATGAAATAGCGAT
GAAAATTAAAGAAAAATACCCAAAGGTTGTGGAAAAATTGAAGTACTCAA
AATCGGAAGAAAGTGCGATATCTAATAAGGAAATTGTAAAAAAGATTGAT
TCGTTAATAAGAAAAAAAGTAAGTTTAGAAAGGTTGTTTTAAGAGTAGAA
ATTATTTCTATGGATCTGGGACATGCAAGCATTTACTTACAAATCAAAGA
GAAAACATTTTACAGAGACTAGAGTCTAGACAAATAAAATACATTTAAAA
AGGGATTAAAAGCCTAAATTATTTATATTTTGTCTCTTCATTTACTTCCG
ACTTTGTACATGAGAAAATCTAAATGTCACTGCTAAAGCTTGCTTATCTA
TACTTTCTTCTTATTGACTTGTTCATTAAGATAATCAAATAAGATACGTT
TGACATTATTCTGTAATAAATTCTTGTTTTTCCCTGTTATTCGTCCAGCA
TTGGTACAGCTATAATTGTTATAAAGGGAGATTGAAAAAGCTATTTGTTA
AAATTAATTAAATGTTAATTTTCTTCAAAACAATAACGGCAAAATTTTAC
ATTTGCTGGTATAATAATAAAAAGATGTCT
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protein sequence of SMED30027455-orf-1

>SMED30027455-orf-1 ID=SMED30027455-orf-1|Name=SMED30027455-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=818bp
MKTDKIPNVPNAPQSTPIPPVKNEQNLIKHYFPEETNKKEAKIKEKKFDF
PLFLPEEIQMKIIKEVESNLIKFYFPGWIYGCRLCYGCQMSQKIHIHKDK
SMRAGGGFAYRKTDLWNIKNAAFLRRPLNSNEMIVELPEKIENEIKRWTM
EILEKVNKYNKKPKRQTGYLYRKKGFKFRTKASSLNRVTFGAESYENQII
SPYAEKPKIKEVYQKNTIEIKRSQPVMHTFHLVPGDLEEFETKYSSFPGC
QAPESFKNRFHKKENNAKTKETLTNFSINELWFENSEPDSHDNQKKVQDE
ELLVYRLQNDLEIEDFSQESQEINEESLKSFADVSEDAKENENGTSPVDD
KTWLAENFGIEPSDYGIGTKHILNYRQAFQKRIPSFIKLPIIYDNESSEF
GVGELTESMPKENYILTQPIGEQKSEIVYDNIYQADSFDDPLNDVHETES
DTFGDIDYIKSTENSSIQMQKLISKIDSKDIENLNNSDNDNLGQTHSKSF
SQINLIKEKSRSFLPKISTSVLINQNSSSSNFKSKINLKREDSLAKSDSE
IHSILSKSRNSYLSGENSFIFDRDEESLSINLQEDLSLKSDSEKSVVNET
LKEKRKKIKTMLKQTKMRMSNKKFIAKKENPLTTGDLGQLYEPLDFLSKY
CIIHEHRLPAYENVFQSVLESQKTENPSRSSTMDLNVNKTKKRKRNLKKK
PVNLLTKREESFLRKDVIYNRINYQPPPGQNYTEIEIQKIKFQIQNLLEK
REELKNIYDNSQDSLENEIAMKIKEKYPKVVEKLKYSKSEESAISNKEIV
KKIDSLIRKKVSLERLF*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000418head
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 737..764
NoneNo IPR availableCOILSCoilCoilcoord: 598..618
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21