SMED30027376

Overview
NameSMED30027376
Smed IDSMED30027376
Length (bp)3220
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30027376 (SMED30027376) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30027376 (SMED30027376) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30027376 (SMED30027376) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30027376 (SMED30027376) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30027376

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 27

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30027376SMESG000007018.1 SMESG000007017.1 SmedASXL_015004SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
pharynxSMED30027376SMESG000007018.1 SMESG000007017.1 dd_Smed_v4_1969_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30027376SMESG000007018.1 SMESG000007017.1 dd_Smed_v4_1969_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30027376SMESG000007018.1 SMESG000007017.1 dd_Smed_v4_1969_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027376SMESG000007018.1 SMESG000007017.1 dd_Smed_v4_1969_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30027376SMESG000007018.1 SMESG000007017.1 dd_Smed_v4_1969_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30027376SMESG000007018.1 SMESG000007017.1 dd_Smed_v4_1969_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parapharyngeal regionSMED30027376SMESG000007018.1 SMESG000007017.1 dd_Smed_v4_1969_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30027376SMESG000007018.1 SMESG000007017.1 dd_Smed_v4_1969_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30027376SMESG000007018.1 SMESG000007017.1 dd_Smed_v4_1969_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027376SMESG000007017.1 dd_Smed_v4_7377_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30027376SMESG000007017.1 dd_Smed_v4_7377_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027376SMESG000007017.1 dd_Smed_v4_7377_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30027376SMESG000007017.1 dd_Smed_v4_7377_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30027376SMESG000007017.1 dd_Smed_v4_7377_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027376SMESG000072854.1 SMESG000007018.1 SMESG000007017.1 Contig45238uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027376SMESG000072854.1 SMESG000007018.1 SMESG000007017.1 Contig45238newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
pharynxSMED30027376SMESG000007018.1 SMESG000007017.1 dd_Smed_v6_1969_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30027376SMESG000007018.1 SMESG000007017.1 dd_Smed_v6_1969_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027376SMESG000007018.1 SMESG000007017.1 dd_Smed_v6_1969_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cholinergic neuronSMED30027376SMESG000007018.1 SMESG000007017.1 dd_Smed_v6_1969_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
GABAergic neuronSMED30027376SMESG000007018.1 SMESG000007017.1 dd_Smed_v6_1969_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
goblet cellSMED30027376SMESG000007018.1 SMESG000007017.1 dd_Smed_v6_1969_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
secretory systemSMED30027376SMESG000007018.1 SMESG000007017.1 dd_Smed_v6_1969_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027376SMESG000007018.1 SMESG000007017.1 dd_Smed_v4_1969_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
ciliated epithelial cellSMED30027376SMESG000007018.1 SMESG000007017.1 dd_Smed_v4_1969_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027376SMESG000007017.1 dd_Smed_v4_7377_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SMED30027376 vs. Planmine SMEST
Match: SMESG000007017.1 (SMESG000007017.1)

HSP 1 Score: 1753.8 bits (4541), Expect = 0.000e+0
Identity = 1042/1042 (100.00%), Postives = 1042/1042 (100.00%), Query Frame = 2
Query:   17 AERLSKLCKEFSESILPDSTVIRNXXXXXXXXXXXSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNXXXXXXXXXXXXXXXXXXXXGKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDCXXXXXXXXXXXXXXXXXXCKEFSESILPDSTVIRNXXXXXXXXXXXSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNXXXXXXXXXXXXXXXXXXXXGKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDCKSKELDLKNVDPILDVSDCHSRPFSDFEDFIVPAVHVPVHSFGRPYLSYSDSINEDLSHNLDYNQPIVDDRELVCSISSQCSQIEMITRSDDLADDVSLSFQSQLDPSIPEFEKSSEIGYYAXXXXXXXXXXXXXXXXXXXNYQFSEEERNLNLDSLKPSNWMHIFEMELKYLEGQTDAFSSATDKNQEHFDIGCDHFFDNDKLFRVTENASLRLKNLENNCSNYVSNRXXXXXXXXXXXXXXXXXXXXXXXXXXHLFHLLDLLKRQNEXXXXXXXXXRDDIEKQLQEHRNRISDVRSRLSRYYKCISSISTEKVNLDKKNSEDKQPPSIWRKYKEKHIIPLQSFRSQRTNLSPSNSTQSLYRKSNFDIQKSKKLLEETENIIRNSREKLNKK 3142
            AERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNEISESKLIELEEILLKEVSEGKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDCKSKELELKKEEAERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNEISESKLIELEEILLKEVSEGKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDCKSKELDLKNVDPILDVSDCHSRPFSDFEDFIVPAVHVPVHSFGRPYLSYSDSINEDLSHNLDYNQPIVDDRELVCSISSQCSQIEMITRSDDLADDVSLSFQSQLDPSIPEFEKSSEIGYYADSDVFSHFSSSDLPLFPPSNYQFSEEERNLNLDSLKPSNWMHIFEMELKYLEGQTDAFSSATDKNQEHFDIGCDHFFDNDKLFRVTENASLRLKNLENNCSNYVSNRRSSNASIPINAASRISSPFPDSDSPSHLFHLLDLLKRQNEIILSSSSLSRDDIEKQLQEHRNRISDVRSRLSRYYKCISSISTEKVNLDKKNSEDKQPPSIWRKYKEKHIIPLQSFRSQRTNLSPSNSTQSLYRKSNFDIQKSKKLLEETENIIRNSREKLNKK
Sbjct:  941 AERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNEISESKLIELEEILLKEVSEGKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDCKSKELELKKEEAERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNEISESKLIELEEILLKEVSEGKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDCKSKELDLKNVDPILDVSDCHSRPFSDFEDFIVPAVHVPVHSFGRPYLSYSDSINEDLSHNLDYNQPIVDDRELVCSISSQCSQIEMITRSDDLADDVSLSFQSQLDPSIPEFEKSSEIGYYADSDVFSHFSSSDLPLFPPSNYQFSEEERNLNLDSLKPSNWMHIFEMELKYLEGQTDAFSSATDKNQEHFDIGCDHFFDNDKLFRVTENASLRLKNLENNCSNYVSNRRSSNASIPINAASRISSPFPDSDSPSHLFHLLDLLKRQNEIILSSSSLSRDDIEKQLQEHRNRISDVRSRLSRYYKCISSISTEKVNLDKKNSEDKQPPSIWRKYKEKHIIPLQSFRSQRTNLSPSNSTQSLYRKSNFDIQKSKKLLEETENIIRNSREKLNKK 1982          

HSP 2 Score: 1063.91 bits (2750), Expect = 0.000e+0
Identity = 649/649 (100.00%), Postives = 649/649 (100.00%), Query Frame = 2
Query:   17 AERLSKLCKEFSESILPDSTVIRNXXXXXXXXXXXSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNXXXXXXXXXXXXXXXXXXXXGKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDCXXXXXXXXXXXXXXXXXXCKEFSESILPDSTVIRNXXXXXXXXXXXSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNXXXXXXXXXXXXXXXXXXXXGKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDC 1963
            AERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNEISESKLIELEEILLKEVSEGKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDCKSKELELKKEEAERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNEISESKLIELEEILLKEVSEGKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDC
Sbjct:  281 AERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNEISESKLIELEEILLKEVSEGKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDCKSKELELKKEEAERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNEISESKLIELEEILLKEVSEGKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDC 929          

HSP 3 Score: 978.778 bits (2529), Expect = 0.000e+0
Identity = 592/593 (99.83%), Postives = 592/593 (99.83%), Query Frame = 2
Query:  185 GELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNXXXXXXXXXXXXXXXXXXXXGKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDCXXXXXXXXXXXXXXXXXXCKEFSESILPDSTVIRNXXXXXXXXXXXSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNXXXXXXXXXXXXXXXXXXXXGKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDC 1963
             ELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNEISESKLIELEEILLKEVSEGKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDCKSKELELKKEEAERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNEISESKLIELEEILLKEVSEGKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDC
Sbjct:    7 SELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNEISESKLIELEEILLKEVSEGKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDCKSKELELKKEEAERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNEISESKLIELEEILLKEVSEGKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDC 599          
BLAST of SMED30027376 vs. Planmine SMEST
Match: SMESG000007018.1 (SMESG000007018.1)

HSP 1 Score: 408.297 bits (1048), Expect = 3.867e-129
Identity = 316/474 (66.67%), Postives = 350/474 (73.84%), Query Frame = 2
Query:  617 KDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDCXXXXXXXXXXXXXXXXXXCKEFSESILPDSTVIRNXXXXXXXXXXXSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNXXXXXXXXXXXXXXXXXXXXGK------DLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVE--NSKNDQIKLKGQDLSKLSKV-----------------MDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDC 1963
            KDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIE  L+ +  NSKNDQIKLKGQDLSKLSKVMDKIE                              +VIDCKSKELELKKEEAERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLE      +D++I E       KSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNEISESKLIELEEILLKEVSE K      D +KLK      L  ++    +I+S I +  D     R +E + ++  +E+++ +L E  + K  +I ++ +   K+SK+                 +D ++  ++E P +      K NKTLLESVVPKLQEVIDC
Sbjct:  160 KDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIENNLERISRNSKNDQIKLKGQDLSKLSKVMDKIE------------------------------KVIDCKSKELELKKEEAERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLE------VDRNIWE-------KSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNEISESKLIELEEILLKEVSEEKISNSKNDQIKLKGQDLSKLSKVM---DKIESKINETPD---AERSNEWKANKTLLESVVPKLQEVIDCKIQRIGIEERRSRKMSKLCKEFSESILPDSTVIRNVDIVDEIVDEIPTS-----GKQNKTLLESVVPKLQEVIDC 579          

HSP 2 Score: 363.999 bits (933), Expect = 1.979e-112
Identity = 305/445 (68.54%), Postives = 337/445 (75.73%), Query Frame = 2
Query:   17 AERLSKLCKEFSESILPDSTVIRNXXXXXXXXXXXSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNXXXXXXXXXXXXXXXXXXXXGK------DLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVE--NSKNDQIKLKGQDLSKLSKV-----------------MDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDCXXXXXXXXXXXXXXXXXXCKEFSESILPDSTVIRNXXXXXXXXXXXSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRF 1276
            AERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLE      +D++I E       KSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNEISESKLIELEEILLKEVSE K      D +KLK      L  ++    +I+S I +  D     R +E + ++  +E+++ +L E  + K  +I ++ +   K+SK+                 +D ++  ++E P +      K NKTLLESVVPKLQEVIDCKSKELELKKEEAERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKER                  ELENSKGKELVESLEIMKSLIPKSKAGEKER+ 
Sbjct:  260 AERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLE------VDRNIWE-------KSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNEISESKLIELEEILLKEVSEEKISNSKNDQIKLKGQDLSKLSKVM---DKIESKINETPD---AERSNEWKANKTLLESVVPKLQEVIDCKIQRIGIEERRSRKMSKLCKEFSESILPDSTVIRNVDIVDEIVDEIPTS-----GKQNKTLLESVVPKLQEVIDCKSKELELKKEEAERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKER------------------ELENSKGKELVESLEIMKSLIPKSKAGEKERKI 662          

HSP 3 Score: 233.417 bits (594), Expect = 4.670e-65
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 2
Query:  854 MDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDCXXXXXXXXXXXXXXXXXXCKEFSESILPDSTVIRNXXXXXXXXXXXSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLE 1315
            MDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDCKSKELELKKEEAERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLE
Sbjct:    1 MDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDCKSKELELKKEEAERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLE 154          

HSP 4 Score: 173.326 bits (438), Expect = 1.019e-44
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 2
Query:   17 AERLSKLCKEFSESILPDSTVIRNXXXXXXXXXXXSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLE 325
            AERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLE
Sbjct:   52 AERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLE 154          

HSP 5 Score: 84.3445 bits (207), Expect = 2.561e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2
Query: 1844 MDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDC 1963
            MDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDC
Sbjct:    1 MDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDC 40          
BLAST of SMED30027376 vs. Planmine SMEST
Match: SMESG000007018.1 (SMESG000007018.1)

HSP 1 Score: 394.045 bits (1011), Expect = 1.486e-126
Identity = 255/310 (82.26%), Postives = 261/310 (84.19%), Query Frame = 2
Query:  614 GKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDCXXXXXXXXXXXXXXXXXXCKEFSESILPDSTVIRNXXXXXXXXXXXSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRN 1543
            GKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIE  L+ +  NSKNDQIKLKGQDLSKLSKVMDKIE                              +VIDCKSKELELKKEEAERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLE      +D++I E       KSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRN
Sbjct:  159 GKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIENNLERISRNSKNDQIKLKGQDLSKLSKVMDKIE------------------------------KVIDCKSKELELKKEEAERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLE------VDRNIWE-------KSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRN 425          

HSP 2 Score: 272.322 bits (695), Expect = 4.042e-81
Identity = 162/179 (90.50%), Postives = 165/179 (92.18%), Query Frame = 2
Query:   17 AERLSKLCKEFSESILPDSTVIRNXXXXXXXXXXXSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRN 553
            AERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLE      +D++I E       KSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRN
Sbjct:  260 AERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLE------VDRNIWE-------KSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRN 425          

HSP 3 Score: 233.802 bits (595), Expect = 3.547e-67
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 2
Query:  854 MDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDCXXXXXXXXXXXXXXXXXXCKEFSESILPDSTVIRNXXXXXXXXXXXSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLE 1315
            MDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDCKSKELELKKEEAERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLE
Sbjct:    1 MDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDCKSKELELKKEEAERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLE 154          

HSP 4 Score: 172.94 bits (437), Expect = 3.785e-46
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 2
Query:   17 AERLSKLCKEFSESILPDSTVIRNXXXXXXXXXXXSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLE 325
            AERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLE
Sbjct:   52 AERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLE 154          

HSP 5 Score: 153.295 bits (386), Expect = 2.236e-39
Identity = 79/89 (88.76%), Postives = 82/89 (92.13%), Query Frame = 2
Query: 1604 GKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKIN 1870
            GKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIE  L+ +  NSKNDQIKLKGQDLSKLSKVMDKIE  I+
Sbjct:  159 GKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIENNLERISRNSKNDQIKLKGQDLSKLSKVMDKIEKVID 247          

HSP 6 Score: 84.7297 bits (208), Expect = 9.911e-17
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2
Query: 1844 MDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDC 1963
            MDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDC
Sbjct:    1 MDKIESKINETPDAERSNEWKANKTLLESVVPKLQEVIDC 40          
BLAST of SMED30027376 vs. Planmine SMEST
Match: SMESG000020529.1 (SMESG000020529.1)

HSP 1 Score: 160.229 bits (404), Expect = 4.313e-45
Identity = 108/143 (75.52%), Postives = 117/143 (81.82%), Query Frame = 2
Query:  383 KKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNXXXXXXXXXXXXXXXXXXXXGKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQ 811
            KKSE +L+NSDEDS KILEAIKCL DDEE +QEKLLNR D DNL DGIKV +      +SE KLI+LEE LLKEVSEGKDLVKLK TV E LIGILCEAVE Q SIPDIADRIRKS QD  ENS R IETILKEL+ENS+ND+
Sbjct:    5 KKSEIQLNNSDEDSKKILEAIKCLIDDEEIQQEKLLNRTDTDNLFDGIKVTE------VSELKLIQLEENLLKEVSEGKDLVKLKPTVIETLIGILCEAVEFQFSIPDIADRIRKSEQDGNENSLRSIETILKELIENSRNDK 141          

HSP 2 Score: 160.229 bits (404), Expect = 4.313e-45
Identity = 108/143 (75.52%), Postives = 117/143 (81.82%), Query Frame = 2
Query: 1373 KKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNXXXXXXXXXXXXXXXXXXXXGKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQ 1801
            KKSE +L+NSDEDS KILEAIKCL DDEE +QEKLLNR D DNL DGIKV +      +SE KLI+LEE LLKEVSEGKDLVKLK TV E LIGILCEAVE Q SIPDIADRIRKS QD  ENS R IETILKEL+ENS+ND+
Sbjct:    5 KKSEIQLNNSDEDSKKILEAIKCLIDDEEIQQEKLLNRTDTDNLFDGIKVTE------VSELKLIQLEENLLKEVSEGKDLVKLKPTVIETLIGILCEAVEFQFSIPDIADRIRKSEQDGNENSLRSIETILKELIENSRNDK 141          
BLAST of SMED30027376 vs. Planmine SMEST
Match: SMESG000028712.1 (SMESG000028712.1)

HSP 1 Score: 108.227 bits (269), Expect = 3.236e-26
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 2
Query:  416 EDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNXXXXXXXXXXXXXXXXXXXXGKDLVKLKATVHEPLIGILCEAVEIQS 694
            ED+NKILEAIKCLFDD+E EQEKLLNRKDIDNL+DGIKV KD L NEISESK+IELEE LLK+VSEGKD VKLK T +E LI ILCE+VEIQS
Sbjct:  131 EDNNKILEAIKCLFDDQESEQEKLLNRKDIDNLIDGIKVTKDTLSNEISESKVIELEENLLKDVSEGKDFVKLKETDNESLIAILCESVEIQS 223          

HSP 2 Score: 108.227 bits (269), Expect = 3.236e-26
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 2
Query: 1406 EDSNKILEAIKCLFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNXXXXXXXXXXXXXXXXXXXXGKDLVKLKATVHEPLIGILCEAVEIQS 1684
            ED+NKILEAIKCLFDD+E EQEKLLNRKDIDNL+DGIKV KD L NEISESK+IELEE LLK+VSEGKD VKLK T +E LI ILCE+VEIQS
Sbjct:  131 EDNNKILEAIKCLFDDQESEQEKLLNRKDIDNLIDGIKVTKDTLSNEISESKVIELEENLLKDVSEGKDFVKLKETDNESLIAILCESVEIQS 223          
The following BLAST results are available for this feature:
BLAST of SMED30027376 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027376 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027376 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027376 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027376 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027376 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027376 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027376 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027376 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027376 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027376 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027376 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027376 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027376 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000007017.10.000e+0100.00SMESG000007017.1[more]
SMESG000007018.13.867e-12966.67SMESG000007018.1[more]
SMESG000007018.11.486e-12682.26SMESG000007018.1[more]
SMESG000020529.14.313e-4575.52SMESG000020529.1[more]
SMESG000028712.13.236e-2681.72SMESG000028712.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30027376 ID=SMED30027376|Name=SMED30027376|organism=Schmidtea mediterranea sexual|type=transcript|length=3220bp
ATTGAAGAAAGAAGAAGCAGAAAGATTGAGCAAATTGTGCAAAGAATTCT
CAGAATCCATTCTACCAGATTCAACAGTTATTAGGAATGTAGACATTGTT
GACGAAATTGTCGATGAAGTAAGTAAGGAACGTAAAGTTGGACTTGAAAA
TGGCACTAAATTAATATGCGATGCTTTGGAGAAAGGTGAATTGGAGAACT
CGAAAGGCAAAGAACTTGTCGAAAGTCTGGAAATTATGAAATCATTGATT
CCAAAATCAAAGGCTGGAGAGAAAGAAAGAAGATTTGTTGAAGAAATAAT
AGACGATTTGAATAGATCATTAGAAAGTGGATCGAAAGTGAAAATTGACA
AATCTATTTGTGAACAATTAAAAGCATTTGGGAAAAAGAGTGAAAAGCGA
TTAGATAATTCCGATGAGGATAGTAACAAAATACTGGAAGCAATTAAATG
TTTATTTGACGACGAAGAATGCGAACAAGAGAAACTGCTGAACCGAAAAG
ACATTGATAATTTACTTGATGGAATAAAAGTCGCTAAAGATGCGTTGAGA
AATGAAATTAGTGAATCGAAACTGATTGAGTTGGAAGAAATTTTATTGAA
AGAAGTTTCCGAAGGAAAAGATCTCGTTAAACTAAAAGCAACAGTCCATG
AGCCTCTGATCGGAATTCTATGTGAAGCTGTCGAAATCCAATCTAGCATT
CCAGATATTGCGGACCGAATTAGAAAATCTCGACAAGACGAAATTGAAAA
CAGTCGACGACCGATTGAAACAATCTTGAAAGAATTAGTAGAAAATTCAA
AGAATGATCAAATAAAATTGAAAGGTCAAGATTTATCAAAATTGTCAAAA
GTTATGGATAAAATTGAAAGTAAAATTAATGAAACGCCAGATGCTGAAAG
ATCCAACGAGTGGAAAGCAAATAAAACTTTATTGGAATCCGTTGTTCCTA
AACTACAAGAAGTGATCGATTGTAAATCCAAAGAATTGGAATTGAAGAAA
GAAGAAGCAGAAAGATTGAGCAAATTGTGCAAAGAATTCTCAGAATCCAT
TCTACCAGATTCAACAGTTATTAGGAATGTAGACATTGTTGACGAAATTG
TCGATGAAGTAAGTAAGGAACGTAAAGTTGGACTTGAAAATGGCACTAAA
TTAATATGCGATGCTTTGGAGAAAGGTGAATTGGAGAACTCGAAAGGCAA
AGAACTTGTCGAAAGTCTGGAAATTATGAAATCATTGATTCCAAAATCAA
AGGCTGGAGAGAAAGAAAGAAGATTTGTTGAAGAAATAATAGACGATTTG
AATAGATCATTAGAAAGTGGATCGAAAGTGAAAATTGACAAATCTATTTG
TGAACAATTAAAAGCATTTGGGAAAAAGAGTGAAAAGCGATTAGATAATT
CCGATGAGGATAGTAACAAAATACTGGAAGCAATTAAATGTTTATTTGAC
GACGAAGAATGCGAACAAGAGAAACTGCTGAACCGAAAAGACATTGATAA
TTTACTTGATGGAATAAAAGTCGCTAAAGATGCGTTGAGAAATGAAATTA
GTGAATCGAAACTGATTGAGTTGGAAGAAATTTTATTGAAAGAAGTTTCC
GAAGGAAAAGATCTCGTTAAACTAAAAGCAACAGTCCATGAGCCTCTGAT
CGGAATTCTATGTGAAGCTGTCGAAATCCAATCTAGCATTCCAGATATTG
CGGACCGAATTAGAAAATCTCGACAAGACGAAATTGAAAACAGTCGACGA
CCGATTGAAACAATCTTGAAAGAATTAGTAGAAAATTCAAAGAATGATCA
AATAAAATTGAAAGGTCAAGATTTATCAAAATTGTCAAAAGTTATGGATA
AAATTGAAAGTAAAATTAATGAAACGCCAGATGCTGAAAGATCCAACGAG
TGGAAAGCAAATAAAACTTTATTGGAATCCGTTGTTCCTAAACTACAAGA
AGTGATCGATTGTAAATCCAAAGAATTGGATTTGAAGAATGTCGATCCTA
TTCTAGATGTTAGTGATTGCCATTCTCGTCCATTTTCAGATTTTGAAGAT
TTCATTGTTCCTGCTGTTCATGTTCCTGTTCATTCGTTTGGTCGTCCATA
TTTGTCTTATTCTGATTCAATAAATGAAGATTTATCTCATAATTTGGATT
ATAATCAACCAATTGTTGACGACCGAGAATTAGTATGCTCCATTTCTTCT
CAATGTTCTCAAATTGAAATGATCACTCGTTCTGACGATTTAGCAGATGA
TGTTTCTTTATCCTTTCAATCTCAACTTGATCCATCAATTCCTGAATTTG
AAAAAAGTTCTGAAATTGGATATTACGCGGATTCTGATGTGTTTTCGCAT
TTTTCTTCTTCTGATCTTCCCTTATTTCCTCCTTCTAATTATCAGTTTAG
TGAAGAGGAACGTAATTTGAATCTGGATTCTTTGAAACCCTCTAACTGGA
TGCATATCTTCGAAATGGAATTGAAATATTTAGAAGGTCAAACTGACGCT
TTCTCATCAGCTACCGATAAAAATCAAGAACATTTTGATATCGGATGTGA
TCATTTCTTTGATAATGACAAGCTTTTCCGTGTTACTGAAAATGCTAGTT
TGAGACTTAAAAATCTCGAGAATAATTGCAGCAATTATGTCTCAAATCGT
AGATCTTCAAATGCATCTATTCCAATAAATGCTGCTTCACGTATCTCTTC
TCCATTTCCTGATTCTGATAGCCCGTCCCACCTTTTCCATCTTCTTGATT
TACTTAAAAGGCAAAATGAAATTATTTTAAGTTCTTCTTCTCTTTCTCGT
GATGATATAGAGAAACAGTTGCAAGAACATCGTAATCGCATTTCAGATGT
TAGGAGTCGTCTTTCTAGATATTATAAATGCATTTCTTCCATTTCTACGG
AGAAAGTTAATTTAGACAAGAAAAACAGTGAAGATAAACAGCCTCCCTCA
ATTTGGCGAAAATATAAAGAAAAGCATATTATTCCCCTTCAATCATTTAG
ATCACAAAGGACAAATTTATCCCCGTCGAATAGCACTCAATCATTATACA
GAAAATCTAATTTTGATATTCAAAAATCCAAAAAATTGTTAGAAGAAACA
GAAAATATTATAAGGAATTCTAGAGAAAAATTAAATAAAAAATAAATGTT
TCAGATACTTATTCTTTTGGTACCGACGACAGTCAGAGTGTGATAATGTG
ATTTTATTGTATATTTTCAC
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protein sequence of SMED30027376-orf-1

>SMED30027376-orf-1 ID=SMED30027376-orf-1|Name=SMED30027376-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1048bp
LKKEEAERLSKLCKEFSESILPDSTVIRNVDIVDEIVDEVSKERKVGLEN
GTKLICDALEKGELENSKGKELVESLEIMKSLIPKSKAGEKERRFVEEII
DDLNRSLESGSKVKIDKSICEQLKAFGKKSEKRLDNSDEDSNKILEAIKC
LFDDEECEQEKLLNRKDIDNLLDGIKVAKDALRNEISESKLIELEEILLK
EVSEGKDLVKLKATVHEPLIGILCEAVEIQSSIPDIADRIRKSRQDEIEN
SRRPIETILKELVENSKNDQIKLKGQDLSKLSKVMDKIESKINETPDAER
SNEWKANKTLLESVVPKLQEVIDCKSKELELKKEEAERLSKLCKEFSESI
LPDSTVIRNVDIVDEIVDEVSKERKVGLENGTKLICDALEKGELENSKGK
ELVESLEIMKSLIPKSKAGEKERRFVEEIIDDLNRSLESGSKVKIDKSIC
EQLKAFGKKSEKRLDNSDEDSNKILEAIKCLFDDEECEQEKLLNRKDIDN
LLDGIKVAKDALRNEISESKLIELEEILLKEVSEGKDLVKLKATVHEPLI
GILCEAVEIQSSIPDIADRIRKSRQDEIENSRRPIETILKELVENSKNDQ
IKLKGQDLSKLSKVMDKIESKINETPDAERSNEWKANKTLLESVVPKLQE
VIDCKSKELDLKNVDPILDVSDCHSRPFSDFEDFIVPAVHVPVHSFGRPY
LSYSDSINEDLSHNLDYNQPIVDDRELVCSISSQCSQIEMITRSDDLADD
VSLSFQSQLDPSIPEFEKSSEIGYYADSDVFSHFSSSDLPLFPPSNYQFS
EEERNLNLDSLKPSNWMHIFEMELKYLEGQTDAFSSATDKNQEHFDIGCD
HFFDNDKLFRVTENASLRLKNLENNCSNYVSNRRSSNASIPINAASRISS
PFPDSDSPSHLFHLLDLLKRQNEIILSSSSLSRDDIEKQLQEHRNRISDV
RSRLSRYYKCISSISTEKVNLDKKNSEDKQPPSIWRKYKEKHIIPLQSFR
SQRTNLSPSNSTQSLYRKSNFDIQKSKKLLEETENIIRNSREKLNKK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000020protonephridia
PLANA:0000034epidermis
PLANA:0000067goblet cell
PLANA:0000099neuron
PLANA:0000101muscle cell
PLANA:0000106ciliated epithelial cell
PLANA:0000418head
PLANA:0000463cholinergic neuron
PLANA:0000464GABAergic neuron
PLANA:0000484secretory system
PLANA:0002032epidermal cell
PLANA:0003117parapharyngeal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 322..349
NoneNo IPR availableCOILSCoilCoilcoord: 933..953
NoneNo IPR availableCOILSCoilCoilcoord: 1023..1047
NoneNo IPR availableCOILSCoilCoilcoord: 855..882