Dimer_Tnp_hAT domain-containing protein

Overview
NameDimer_Tnp_hAT domain-containing protein
Smed IDSMED30027327
Length (bp)4496
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Dimer_Tnp_hAT domain-containing protein (SMED30027327) t-SNE clustered cells

Violin plots show distribution of expression levels for Dimer_Tnp_hAT domain-containing protein (SMED30027327) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Dimer_Tnp_hAT domain-containing protein (SMED30027327) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Dimer_Tnp_hAT domain-containing protein (SMED30027327) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30027327

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30027327 SmedASXL_065560SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30027327 SmedASXL_065560SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30027327 SmedASXL_077356SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
epidermisSMED30027327SMESG000075241.1 SMESG000064158.1 SMESG000051338.1 SMESG000045435.1 SMESG000045410.1 SMESG000045016.1 SMESG000042624.1 SMESG000035540.1 SMESG000025168.1 SMESG000021457.1 SMESG000017191.1 SMESG000015033.1 SMESG000012322.1 SMESG000012241.1 SMESG000008645.1 SMESG000003942.1 dd_Smed_v4_18429_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000043280.1 (uncharacterized LOC100492546 [Source:NCBI gene;Acc:100492546])

HSP 1 Score: 65.855 bits (159), Expect = 4.664e-10
Identity = 28/104 (26.92%), Postives = 60/104 (57.69%), Query Frame = 1 
Query: 1567 FDEYGLMRNFI-EDNISSWMDAKLTPENIWIKIFTNFRERSTSLVNMEKLVQFAFCLAGTSTECKRIFSLMNNVWDDHKSRLNIDTMNAILSIQFNSKMSCLDF 1875
            F+E   +++F+ +D +  W    +T    W ++F++F ++S S   ++ +V+   C+ G+S   +++FS MN + D   S+L + ++ ++L +  N  MSC +F
Sbjct:  507 FNEITCLKSFVTKDKVQEWNSNGVTTCERWSQVFSHFSQKSLSFTQLKTIVELTLCMPGSSAPIQKVFSAMNMMSDADYSKLGVQSLKSVLMVLINFPMSCQEF 610
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Match: A0A4Y2CGZ5 (Dimer_Tnp_hAT domain-containing protein OS=Araneus ventricosus OX=182803 GN=AVEN_258919_1 PE=4 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 44/130 (33.85%), Postives = 77/130 (59.23%), Query Frame = 1 
Query: 1567 FDEYGLMRNFIEDNISSW------MDAKLTPENIWIKIFTNFRERSTSLVNMEKLVQFAFCLAGTSTECKRIFSLMNNVWDDHKSRLNIDTMNAILSIQFNSKMSCLDFFDMIKKDTKFLNNVISEEKYL 1938
            FDE  L + +++ N   W       D  ++ E  W+++F +F+E   ++ N+ K+V++AFCL GTS   +R+FSLMNN W D +  +   T+  +++ + N  ++C DF++ IK    FL  V++ EKY+
Sbjct:    5 FDEVVLAKEYLQSNWEQWKQEETTRDVIISSEEKWLRLFGHFKENHIAVPNLIKIVEYAFCLPGTSAPVERVFSLMNNAWTDDRGVMKESTVKGLMTCKINIGLACEDFYNKIKNKKDFLKKVLANEKYM 134
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Match: A0A2H6NDA1 (Dimer_Tnp_hAT domain-containing protein OS=Micrurus lemniscatus carvalhoi OX=129465 PE=4 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.196e-19
Identity = 48/124 (38.71%), Postives = 75/124 (60.48%), Query Frame = 1 
Query: 1567 FDEYGLMRNFIE-DNISSWMDAKLTPENIWIKIFTNFRERSTSLVNMEKLVQFAFCLAGTSTECKRIFSLMNNVWDDHKSRLNIDTMNAILSIQFNSKMSCLDFFDMIKKDTKFLNNVISEEKY 1935
            FDE  L + +I+ D + SW  AK+T EN W++IF +F        N+ K+V++A  L GT+   + +FS +N VW   KS+L++DT+ AIL +++N   SC  F D++  D+  L  + S EKY
Sbjct:   64 FDEVSLFKIYIDKDKVKSWASAKITIENKWLEIFHHFETNHVPYNNILKIVEYALSLPGTNAASEHVFSTVNKVWTSEKSQLSVDTLKAILCVKYNLTNSCEKFHDILNNDSNLLKKIHSNEKY 187
[Close]
BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Match: A0A2D4I5L3 (Dimer_Tnp_hAT domain-containing protein (Fragment) OS=Micrurus lemniscatus lemniscatus OX=129467 PE=4 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 5.868e-19
Identity = 48/124 (38.71%), Postives = 75/124 (60.48%), Query Frame = 1 
Query: 1567 FDEYGLMRNFIE-DNISSWMDAKLTPENIWIKIFTNFRERSTSLVNMEKLVQFAFCLAGTSTECKRIFSLMNNVWDDHKSRLNIDTMNAILSIQFNSKMSCLDFFDMIKKDTKFLNNVISEEKY 1935
            FDE  L + +I+ D + SW  AK+T EN W++IF +F        N+ K+V++A  L GT+   + +FS +N VW   KS+L++DT+ AIL +++N   SC  F D++  D+  L  + S EKY
Sbjct:  137 FDEVSLFKIYIDKDKVKSWASAKITIENKWLEIFHHFETNHVPYNNILKIVEYALSLPGTNAASEHVFSTVNKVWTSEKSQLSVDTLKAILCVKYNLTNSCEKFHDILNNDSNLLKKIHSNEKY 260
[Close]
BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Match: A0A4Y2DWE6 (Dimer_Tnp_hAT domain-containing protein OS=Araneus ventricosus OX=182803 GN=AVEN_265822_1 PE=4 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.080e-18
Identity = 42/130 (32.31%), Postives = 76/130 (58.46%), Query Frame = 1 
Query: 1567 FDEYGLMRNFIEDNISSW------MDAKLTPENIWIKIFTNFRERSTSLVNMEKLVQFAFCLAGTSTECKRIFSLMNNVWDDHKSRLNIDTMNAILSIQFNSKMSCLDFFDMIKKDTKFLNNVISEEKYL 1938
            FDE  L + +++ N   W       D  ++ E  W+++F +F+E   +  N+ K+V++AFCL GTS   +++FSLMNN W D +  +   T+  +++ + N  ++C +F++ IK    FL  V++ EKY+
Sbjct:    9 FDEVVLAKEYLQSNWEQWKQEDTTRDVIISSEEKWLRLFGHFKENHIAAPNLIKIVKYAFCLPGTSAPVEKVFSLMNNAWTDDRGLMKESTVKGLMTCKINIGLACENFYNKIKNKKDFLKKVLANEKYM 138
[Close]
BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Match: A0A4Y2E1U2 (Dimer_Tnp_hAT domain-containing protein OS=Araneus ventricosus OX=182803 GN=AVEN_136361_1 PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.324e-18
Identity = 43/130 (33.08%), Postives = 74/130 (56.92%), Query Frame = 1 
Query: 1567 FDEYGLMRNFIEDNISSW------MDAKLTPENIWIKIFTNFRERSTSLVNMEKLVQFAFCLAGTSTECKRIFSLMNNVWDDHKSRLNIDTMNAILSIQFNSKMSCLDFFDMIKKDTKFLNNVISEEKYL 1938
            FDE  L + +++ N   W       D  ++ E  W+++F +F+E   +  N+ K+V++AFCL GTS   + +FSLMNN W D +  +   T+  +++ + N  + C DF++ IK    FL  V++ EKY+
Sbjct:    9 FDEVVLAKEYLQSNWEQWKQEETTRDVIISSEEKWLRLFGHFKENHIAAPNLIKIVEYAFCLPGTSAPVESVFSLMNNAWTDDRGLMKESTVKGLMTCKINIGLDCEDFYNKIKNKKDFLKKVLTNEKYM 138
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000019398.1 (SMESG000019398.1)

HSP 1 Score: 283.108 bits (723), Expect = 1.209e-77
Identity = 133/149 (89.26%), Postives = 141/149 (94.63%), Query Frame = 2 
Query: 3122 ESWIDESRVTIRIPAHAANRCRQAMWDAGFTVSRVRESRSGTLQQME-VELPFAAIKREPGRNPAREIRGQAEFLLARLEEHQRQTDIQVARARLYLANVNEDIAAGRIACTDGYAPPYNTSFNIDDERLNVKAEAMNAVVPRKVLPEK 3565
            ESW++ESRVTIR PAHAANRCRQAMWDAGFT+S+VRESRSGTLQQME VELPF AIKREPGRNPAREIRGQAEFLLARLEEHQRQTD+QVARARLYLANVNED AAGRIACT+GYAPPYNTSFN+DDERLNV AEAMN V+PRK LP K
Sbjct: 1110 ESWVNESRVTIRFPAHAANRCRQAMWDAGFTISQVRESRSGTLQQMEEVELPFVAIKREPGRNPAREIRGQAEFLLARLEEHQRQTDLQVARARLYLANVNEDKAAGRIACTEGYAPPYNTSFNLDDERLNVNAEAMNVVIPRKALPRK 1258
[Close]
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000012322.1 (SMESG000012322.1)

HSP 1 Score: 253.062 bits (645), Expect = 3.735e-76
Identity = 123/125 (98.40%), Postives = 125/125 (100.00%), Query Frame = 1 
Query: 1567 FDEYGLMRNFIEDNISSWMDAKLTPENIWIKIFTNFRERSTSLVNMEKLVQFAFCLAGTSTECKRIFSLMNNVWDDHKSRLNIDTMNAILSIQFNSKMSCLDFFDMIKKDTKFLNNVISEEKYLN 1941
            FDEYGLMRNFIEDNISSWMDAKLTPENIWIKIFTNFRERSTSLVNMEKLVQFAFCLAGTSTEC+RIFSLMNNVWDDHKSRLNIDTMNAILSIQFNSKMSCLDFFDMIKKDTKFLNNVISE+KYLN
Sbjct:  117 FDEYGLMRNFIEDNISSWMDAKLTPENIWIKIFTNFRERSTSLVNMEKLVQFAFCLAGTSTECERIFSLMNNVWDDHKSRLNIDTMNAILSIQFNSKMSCLDFFDMIKKDTKFLNNVISEKKYLN 241
[Close]
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000021457.1 (SMESG000021457.1)

HSP 1 Score: 254.218 bits (648), Expect = 5.760e-75
Identity = 123/125 (98.40%), Postives = 125/125 (100.00%), Query Frame = 1 
Query: 1567 FDEYGLMRNFIEDNISSWMDAKLTPENIWIKIFTNFRERSTSLVNMEKLVQFAFCLAGTSTECKRIFSLMNNVWDDHKSRLNIDTMNAILSIQFNSKMSCLDFFDMIKKDTKFLNNVISEEKYLN 1941
            FDEYGLMRNFIEDNISSWMDAKLTPENIWIKIFTNFRERSTSLVNMEKLVQFAFCLAGTSTEC+RIFSLMNNVWDDHKSRLNIDTMNAILSIQFNSKMSCLDFFDMIKKDT+FLNNVISEEKYLN
Sbjct:  237 FDEYGLMRNFIEDNISSWMDAKLTPENIWIKIFTNFRERSTSLVNMEKLVQFAFCLAGTSTECERIFSLMNNVWDDHKSRLNIDTMNAILSIQFNSKMSCLDFFDMIKKDTEFLNNVISEEKYLN 361
[Close]
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000042239.1 (SMESG000042239.1)

HSP 1 Score: 244.973 bits (624), Expect = 6.051e-74
Identity = 123/148 (83.11%), Postives = 129/148 (87.16%), Query Frame = 2 
Query: 3119 GESWIDESRVTIRIPAHAANRCRQAMWDAGFTVSRVRESRSGTLQQME-VELPFAAIKREPGRNPAREIRGQAEFLLARLEEHQRQTDIQVARARLYLANVNEDIAAGRIACTDGYAPPYNTSFNIDDERLNVKAEAMNAVVPRKVLP 3559
             ESWIDESRVT+R PAHAANRC QAM DAGFTVS+VRESRSGT QQME VEL F AIKREPGRNPAREIRGQAEFLLA LEEHQRQTDIQV RAR YLA+VNEDIAAGRIACTD YAPPYNTSFN+DDERLN KA A+N VV  +  P
Sbjct:   52 NESWIDESRVTVRFPAHAANRCLQAMCDAGFTVSQVRESRSGTPQQMEEVELRFVAIKREPGRNPAREIRGQAEFLLASLEEHQRQTDIQVDRARRYLASVNEDIAAGRIACTDCYAPPYNTSFNLDDERLNTKAVAINVVVRGRSFP 199
[Close]
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000045435.1 (SMESG000045435.1)

HSP 1 Score: 247.669 bits (631), Expect = 4.036e-73
Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 1 
Query: 1567 FDEYGLMRNFIEDNISSWMDAKLTPENIWIKIFTNFRERSTSLVNMEKLVQFAFCLAGTSTECKRIFSLMNNVWDDHKSRLNIDTMNAILSIQFNSKMSCLDFFDMIKKDTKFLNNVISEEKYLN 1941
            FDEYGLMRNFIEDNISSWMDAKLTPE+IWIKIFTNF ERSTSLVNMEKLVQFAFCLAGTSTEC+RIFSLMNNVWDDHKSRLNIDTMNAILSIQFNSKMSCLDFFDMIKKDTKFLNNVISE KYLN
Sbjct:  196 FDEYGLMRNFIEDNISSWMDAKLTPESIWIKIFTNFSERSTSLVNMEKLVQFAFCLAGTSTECERIFSLMNNVWDDHKSRLNIDTMNAILSIQFNSKMSCLDFFDMIKKDTKFLNNVISEGKYLN 320
The following BLAST results are available for this feature:
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSXETT00000043280.14.664e-1026.92uncharacterized LOC100492546 [Source:NCBI gene;Acc... [more]
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4Y2CGZ52.467e-2033.85Dimer_Tnp_hAT domain-containing protein OS=Araneus... [more]
A0A2H6NDA11.196e-1938.71Dimer_Tnp_hAT domain-containing protein OS=Micruru... [more]
A0A2D4I5L35.868e-1938.71Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A4Y2DWE61.080e-1832.31Dimer_Tnp_hAT domain-containing protein OS=Araneus... [more]
A0A4Y2E1U21.324e-1833.08Dimer_Tnp_hAT domain-containing protein OS=Araneus... [more]
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000019398.11.209e-7789.26SMESG000019398.1[more]
SMESG000012322.13.735e-7698.40SMESG000012322.1[more]
SMESG000021457.15.760e-7598.40SMESG000021457.1[more]
SMESG000042239.16.051e-7483.11SMESG000042239.1[more]
SMESG000045435.14.036e-7396.80SMESG000045435.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30027327 ID=SMED30027327|Name=Dimer_Tnp_hAT domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=4496bp
GACCAAACCAAAGATAGTTGGGTAAATCGGGAAGGCGAATGACCTGGGCA
AAAATAACTTTTACTATTTGTATTGCTAGCTTGACATTTACGTCCAAGCA
GATCAATAGTGGAAACTACCCTGTGCACGCTAAAGCGAGACTGAATTCAA
CAGGCGCACAAAATTCGAATGTTCCACACACGCGCTATCCAGAAAAATTG
TCTACATAATAATAGTCGGCGTGACCTTTGAATTATACTACCGATCATTC
ATAGTAACAATGAATTAAATGAAGTAAATTAATTCCTATGTACTAATTCC
CCCTTTAACTATATAAGTCCTAGACGGAAGCCCTGAAATGATTGACTCCA
GTATCAACCTCGCGAATCAGATTTGAACTAATGACATTTATAAAAATAAA
AATTTATCTCGTAAATGAATCCTACATTGATTTTTATGAAATAATTTATG
AGACTTAACGAACACGGCAAAATACCATCAACGTTAACCAAGTATACTAG
ACGTCAACTCCAAACCTGATGCATAATCTTCGATCTGACTCTGACCCTTT
GGATGAGGGAATGATCCGAGTATTGATCCGACTAACACGTTGACAACGGG
GATAAAAAAATTTTTAGGCGCAACCGAAAAATTTTTTCAACTGATGAGAC
TTACCATTCTTGTTGTTGGAATGTCATGCCGAGAAAAACAATGGTAGATT
ATTGATAATATTCTAAATAATCAGTATAAAGTAAGGTATTTCATTAATAA
CTTTTCTTTTAGCAGTAAATTAAATAAATAAGTAAAGTAAAGTATTTTAT
TAATGATTTTTTACAAAATAATAACAGATTCTTTTAATAGCAAATCAAAT
GAATAAATAAAGTAAAATTGAAGTATTTTATTAATGAGTTTTACAAAATA
ATAACGGATTCTTTTAGCAGTAAACTAAATAAATAAGTAGAGTAGATTAA
AATATTTTATTAATGATTTTTACAATATGATAGCGGATTCTTTCAGTAGT
AGATTAGATCACTGAGCAGAGTAAATTAGAATACCTTATTAATAATTTTT
TATAAACCAATAATGGGTTGTTTTGCAGTGGACTAGCTGAATAATCTGAG
TGAATGGAAATAGTTTATAAATATATTTCATAAAACCAAAAGTACCCTTA
GTATAGTGTGACCATCTGCTTGTTTTTGAGCGGGACAGTCCTGATTTTTT
GCAAAATGTCCTGCGTCCTGATTTTACAAGAATTTGTCCTGATTTTTGAA
TTTTTTTTCGTGATAGCAAAATTCCTAATCTTATTACTTATTAGTAATTT
ATTTTTGAATGACAACTTCTTTATTTTTTAATTATTAAAGAATTTTTTGA
AATTTATAGTAAAATTTTAATTCTTTGCTTTTTTAACAAGAACAAGTAGA
TGAAGTTTTGCAATTTTTATCTATAAATTTAACTCTCCATTATGGTAAAT
TAATTTAGTGAATGTTGTTATATAGAAGTAAAGTTATCAGTTTTCTAAAT
TTTGATTTCATATGCAGCTGATAAATATGGTGATAAATTTTATGACATTA
TTAATAGAGATGTACTTTTGATGAATATGGATTAATGAGAAATTTTATTG
AAGATAACATTTCAAGCTGGATGGACGCAAAATTGACACCTGAAAATATT
TGGATAAAAATTTTTACCAATTTTCGTGAACGCTCGACTTCTCTTGTTAA
TATGGAGAAATTGGTACAATTTGCATTTTGTCTTGCTGGCACATCTACTG
AATGTAAAAGAATTTTTTCACTTATGAATAATGTTTGGGATGATCATAAG
AGTCGCTTGAATATTGATACGATGAATGCAATACTTTCAATTCAGTTCAA
TTCAAAAATGAGCTGTCTAGACTTCTTTGACATGATAAAGAAGGATACCA
AGTTTTTAAATAATGTAATATCTGAAGAAAAATACCTTAACTAAACAATA
AAAACTATAATAAAATGTGTAATTTTATAATATTTGGAACATAAAAATTT
TCAAATATGAAACTTTTTAAAATGTCCTTATTTTTTCTGGAAATGTCCTG
ATATTCTTAAAATTTTACCTGGTCACCCTACCTTAGTAGTAGTTGGTACG
AACGCCTAATGTAAATTAGAATGTTTCCTTAATATCATTCGGATTTCCGC
TAATTTTTCTTTGTTATAAATCATAGCCTCGGCATGTCATTTTGAGTGGG
TTGGAGCTCATCAGTTGGGATGGTTCACGTTAATAGTCAATTAAAATAAT
ATGAAAATAAGAGAGCTATTCACAATTCTGTCCAAATTGAATTTACACTC
TAATAGTTGTTAACGGTTAGTGTCCCAAATAATTAGACATCTAGAACATC
GTTAACTAAACCAAATAGCGCATGAGAGTTTATAACCTTTTTGTATATGA
CATACGATAACTTTGACAGAGAGTAACTCCCTAATAGAATTGGTACCCTG
TAAATAACCAAATTGTCATTCTCATTAGTCGATGGTGAATAGGGTGAAAC
ATAATTGAATATTCTAGATCGGAAAATATGTCCCTGGTACAGTTTATCTT
AATCGATTTTCCGTAACGCTAGATAAGTATGATTCTGAATTGATTTAAAT
TACCCTATTTATCATTTAAAGACCCGATTTTGTCGAGCGAGTGGATCAAG
GAAAAGGTATCGCGTTTAGGTGAAATTTCCCTACAATGTCAAGCCCATTT
GTACGTCGAGATAATGGAAATATAACCGTGGAGATCGGTCTTCGAAAAGA
GAATGCCAAATTAATTACATTGATAACAATGCTGATGAACTCGGATTTTC
CCCTCATCTCGACTGGGTCGGGTAGGTCGACGTTCCTTTATAACATGCTT
ACATCGACCCTCGTAGTAGAGAGCAAACTCCCATTACGCTGAATCTAGAG
CAACGACAATAAGGATGAAATCCGTAACGGGTTAACTAAAAGAGGACATC
ACCCCACATACATTTGACGGTATACTGCATTGTGAGACGGTCAAGTAACA
TAAAATACGCAAAAACCCATGAAGTACGCAGCTTCACTTAGCAACGCAGG
TCTGAGACATAGCCCAAAAATTAAAAGATCTAACAAATTGAGGAAAGGTT
TTAACATTGTTTCATTTAGGCGAGTCGTGGATTGACGAATCCCGAGTCAC
CATCCGAATCCCCGCACACGCTGCAAATCGTTGTCGGCAAGCTATGTGGG
ATGCGGGATTCACTGTATCCCGGGTTAGAGAATCCAGATCCGGCACACTG
CAACAAATGGAGGTCGAGCTCCCGTTCGCAGCCATAAAGCGGGAACCGGG
CCGCAATCCAGCCAGAGAAATTCGTGGCCAGGCTGAGTTCCTCCTTGCTC
GTCTTGAGGAACATCAGCGTCAGACTGATATCCAAGTGGCTAGGGCCAGG
CTTTATCTCGCCAACGTGAACGAAGACATCGCAGCCGGCAGGATTGCTTG
TACGGACGGTTACGCTCCGCCGTACAATACTTCATTCAACATCGATGACG
AGAGGCTAAACGTCAAAGCGGAGGCCATGAACGCAGTTGTCCCGCGGAAG
GTCCTTCCCGAAAAATGAGAAGGAACAAACAACCACCTGAACGACACAAC
GAGCATCCCTATGCCCGGACAGTTCCGAAAACGGATTCTTTCCAACATCA
TAGGAAGACTGACCTTGACAATTACCGAAGATAGAGTACGATGACATCAT
CTTAGTTAAATGAAATAAAACATCTTAGTTAACTTTGATACTTGTTTAAT
CTGAATTATTAATAAAATCACGCCGTTCGGACTCTATAGTTAATGATTAC
AATTAATTAAATACACCAAAGTAAAATAATGCGATATAATAACCCTCTTT
TGCAGATATGGAAACAGTGAGAATGCTGCAACAAGAGTTGGATCGAGCGC
GGAAAACTAATGAGAATTTTCATGCACAAATCTTACAGCTGTCAAACGAA
ATACAACGGATTAGAGCCACGTGGGTAAAGCCGGCGAAGGTGAAAACGCT
CTACCAGAAGATAACAGCAGCTCAAAAGGGCTGGTCGGAGGAAAAACAAA
TCAATCAGAGCCTGAGAACGCAAATAAAGGGTCTGGAGGTGGCAGTGTCA
GCCTGCCAGGAAGGCGCAGCGGTGACACCCCCTCGTCTTCGCCCCTGCTC
AGCTAGAGTATCGAGATTCATTGACGACTCCGAAGATCGCCCAAAGCCCA
GCACTCATCGGCCGGGGAGAAAAGAGCGAGCCAAGCGTCGAGCTGCTCGA
GCATCAACTAATGTGTAATTCGATATTCCAAAATATATGTTTGTTATCGT
TTAATTATTCTTTGATTGTTTCGATGGTCATACGAGAAGGGCATAACGTA
GTACACACGAGATTGAACAAGGAAGAACCAGTAATTAAGCGTTTATAAGA
GCAAACAGATAAAGATGGGACCCAAGTAAACAAAGCACACAGACCTTCTA
ACGGTAGTTTGTTGAACCCAGATTGAGGTCGGGCCAGAGTAGTTCC
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protein sequence of SMED30027327-orf-1

>SMED30027327-orf-1 ID=SMED30027327-orf-1|Name=SMED30027327-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=125bp
MWDAGFTVSRVRESRSGTLQQMEVELPFAAIKREPGRNPAREIRGQAEFL
LARLEEHQRQTDIQVARARLYLANVNEDIAAGRIACTDGYAPPYNTSFNI
DDERLNVKAEAMNAVVPRKVLPEK*
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protein sequence of SMED30027327-orf-2

>SMED30027327-orf-2 ID=SMED30027327-orf-2|Name=SMED30027327-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=120bp
MRNFIEDNISSWMDAKLTPENIWIKIFTNFRERSTSLVNMEKLVQFAFCL
AGTSTECKRIFSLMNNVWDDHKSRLNIDTMNAILSIQFNSKMSCLDFFDM
IKKDTKFLNNVISEEKYLN*
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protein sequence of SMED30027327-orf-3

>SMED30027327-orf-3 ID=SMED30027327-orf-3|Name=SMED30027327-orf-3|organism=Schmidtea mediterranea sexual|type=polypeptide|length=137bp
METVRMLQQELDRARKTNENFHAQILQLSNEIQRIRATWVKPAKVKTLYQ
KITAAQKGWSEEKQINQSLRTQIKGLEVAVSACQEGAAVTPPRLRPCSAR
VSRFIDDSEDRPKPSTHRPGRKERAKRRAARASTNV*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002032epidermal cell
PLANA:0002056medial muscle cell
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR008906HATC_C_dom
Vocabulary: molecular function
TermDefinition
GO:0046983protein dimerization activity
GO:0003676nucleic acid binding