Histone H1B

Overview
NameHistone H1B
Smed IDSMED30027268
Length (bp)771
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Histone H1B (SMED30027268) t-SNE clustered cells

Violin plots show distribution of expression levels for Histone H1B (SMED30027268) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Histone H1B (SMED30027268) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Histone H1B (SMED30027268) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30027268

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 9

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30027268SMESG000071975.1 dd_Smed_v4_3898_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30027268SMESG000071975.1 dd_Smed_v4_3898_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30027268SMESG000071975.1 dd_Smed_v4_3898_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
neoblastSMED30027268SMESG000071975.1 dd_Smed_v4_3898_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30027268SMESG000071975.1 dd_Smed_v4_3898_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027268SMESG000071975.1 Contig42352newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027268SMESG000071975.1 Contig42352uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
head regionSMED30027268SMESG000071975.1 dd_Smed_v6_3898_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
head regionSMED30027268SMESG000071975.1 OX_Smed_1.0.21234ox_Smed_v2PMID:24238224
Kao et al., 2013		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Histone H1B vs. Ensembl Fly
Match: CG6329 (gene:FBgn0033872 transcript:FBtr0087635)

HSP 1 Score: 57.7658 bits (138), Expect = 3.769e-10
Identity = 40/130 (30.77%), Postives = 58/130 (44.62%), Query Frame = 1 
Query:  232 ISVGNAIKCIVCNSYIDAMNCEPWDNFSF-KSDCPPESKT-----------CTKIIQEVHEQVRVIRQCSGAI--ENDDLKCYKRVGRKKVKMYYCHCDGDYCNESPSRNISYFMLASFSILGFILFQNS 579
            I V  A+ C  CNS  D    +P++ +S  + +C  +              C K +Q+++ + R++R C G I  EN D KC +R G   V   YC C  D CN + S    + ML      G  L  NS
Sbjct:   18 IQVTTALMCYDCNSEFDPRCGDPFEPYSIGEVNCSKQEPLEHLKDKYKPTLCRKTVQKIYGKTRIVRGC-GYIPDENTDNKCVRRSGTHDVAAIYCSCTKDLCNGANSPAGQWMMLPLIVAAGLALLLNS 146
[Close]
BLAST of Histone H1B vs. Ensembl Fly
Match: CG6329 (gene:FBgn0033872 transcript:FBtr0339951)

HSP 1 Score: 57.7658 bits (138), Expect = 3.769e-10
Identity = 40/130 (30.77%), Postives = 58/130 (44.62%), Query Frame = 1 
Query:  232 ISVGNAIKCIVCNSYIDAMNCEPWDNFSF-KSDCPPESKT-----------CTKIIQEVHEQVRVIRQCSGAI--ENDDLKCYKRVGRKKVKMYYCHCDGDYCNESPSRNISYFMLASFSILGFILFQNS 579
            I V  A+ C  CNS  D    +P++ +S  + +C  +              C K +Q+++ + R++R C G I  EN D KC +R G   V   YC C  D CN + S    + ML      G  L  NS
Sbjct:   18 IQVTTALMCYDCNSEFDPRCGDPFEPYSIGEVNCSKQEPLEHLKDKYKPTLCRKTVQKIYGKTRIVRGC-GYIPDENTDNKCVRRSGTHDVAAIYCSCTKDLCNGANSPAGQWMMLPLIVAAGLALLLNS 146
[Close]
BLAST of Histone H1B vs. Ensembl Fly
Match: CG6329 (gene:FBgn0033872 transcript:FBtr0087633)

HSP 1 Score: 57.7658 bits (138), Expect = 3.769e-10
Identity = 40/130 (30.77%), Postives = 58/130 (44.62%), Query Frame = 1 
Query:  232 ISVGNAIKCIVCNSYIDAMNCEPWDNFSF-KSDCPPESKT-----------CTKIIQEVHEQVRVIRQCSGAI--ENDDLKCYKRVGRKKVKMYYCHCDGDYCNESPSRNISYFMLASFSILGFILFQNS 579
            I V  A+ C  CNS  D    +P++ +S  + +C  +              C K +Q+++ + R++R C G I  EN D KC +R G   V   YC C  D CN + S    + ML      G  L  NS
Sbjct:   18 IQVTTALMCYDCNSEFDPRCGDPFEPYSIGEVNCSKQEPLEHLKDKYKPTLCRKTVQKIYGKTRIVRGC-GYIPDENTDNKCVRRSGTHDVAAIYCSCTKDLCNGANSPAGQWMMLPLIVAAGLALLLNS 146
[Close]
BLAST of Histone H1B vs. Ensembl Fly
Match: CG6329 (gene:FBgn0033872 transcript:FBtr0087634)

HSP 1 Score: 57.7658 bits (138), Expect = 3.769e-10
Identity = 40/130 (30.77%), Postives = 58/130 (44.62%), Query Frame = 1 
Query:  232 ISVGNAIKCIVCNSYIDAMNCEPWDNFSF-KSDCPPESKT-----------CTKIIQEVHEQVRVIRQCSGAI--ENDDLKCYKRVGRKKVKMYYCHCDGDYCNESPSRNISYFMLASFSILGFILFQNS 579
            I V  A+ C  CNS  D    +P++ +S  + +C  +              C K +Q+++ + R++R C G I  EN D KC +R G   V   YC C  D CN + S    + ML      G  L  NS
Sbjct:   18 IQVTTALMCYDCNSEFDPRCGDPFEPYSIGEVNCSKQEPLEHLKDKYKPTLCRKTVQKIYGKTRIVRGC-GYIPDENTDNKCVRRSGTHDVAAIYCSCTKDLCNGANSPAGQWMMLPLIVAAGLALLLNS 146
[Close]
BLAST of Histone H1B vs. Ensembl Fly
Match: CG6329 (gene:FBgn0033872 transcript:FBtr0087636)

HSP 1 Score: 57.7658 bits (138), Expect = 3.769e-10
Identity = 40/130 (30.77%), Postives = 58/130 (44.62%), Query Frame = 1 
Query:  232 ISVGNAIKCIVCNSYIDAMNCEPWDNFSF-KSDCPPESKT-----------CTKIIQEVHEQVRVIRQCSGAI--ENDDLKCYKRVGRKKVKMYYCHCDGDYCNESPSRNISYFMLASFSILGFILFQNS 579
            I V  A+ C  CNS  D    +P++ +S  + +C  +              C K +Q+++ + R++R C G I  EN D KC +R G   V   YC C  D CN + S    + ML      G  L  NS
Sbjct:   18 IQVTTALMCYDCNSEFDPRCGDPFEPYSIGEVNCSKQEPLEHLKDKYKPTLCRKTVQKIYGKTRIVRGC-GYIPDENTDNKCVRRSGTHDVAAIYCSCTKDLCNGANSPAGQWMMLPLIVAAGLALLLNS 146
[Close]
BLAST of Histone H1B vs. TrEMBL
Match: A0A183LCG6 (Uncharacterized protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS1491 PE=4 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.869e-19
Identity = 48/113 (42.48%), Postives = 66/113 (58.41%), Query Frame = 1 
Query:  247 AIKCIVCNSYIDAMNCEPWDNFSFKSDC-------PPESKTCTKIIQEVHEQVRVIRQCSGAIENDDLKCYKRVGRKKVKMYYCHCDGDYCNE-SPSRNISYFMLASFSILGF 561
             I+C+VCNSY+D   CEPWD F+F ++C         +  +C KI Q V  + RV+RQCS  I+N  L C  RVG   V++ YCHC  D CN  +  +  S++ L+S S L F
Sbjct:    8 GIQCVVCNSYLDGQLCEPWDQFTFITNCSKYPGIDASKPISCRKIDQVVEHERRVVRQCSNVIDN--LGCIDRVGTNDVRIRYCHCTEDLCNSITAVKPQSFYYLSSLSALTF 118
[Close]
BLAST of Histone H1B vs. TrEMBL
Match: A0A183JD93 (Uncharacterized protein OS=Schistosoma curassoni OX=6186 GN=SCUD_LOCUS655 PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.573e-19
Identity = 48/113 (42.48%), Postives = 65/113 (57.52%), Query Frame = 1 
Query:  247 AIKCIVCNSYIDAMNCEPWDNFSFKSDC-------PPESKTCTKIIQEVHEQVRVIRQCSGAIENDDLKCYKRVGRKKVKMYYCHCDGDYCNE-SPSRNISYFMLASFSILGF 561
             I+C+VCNSY+D   CEPWD F+F ++C         +  +C KI Q V  + RV+RQCS  I+N  L C  RVG   V++ YCHC  D CN  +  +  S++ L S S L F
Sbjct:    8 GIQCVVCNSYLDGQLCEPWDQFTFITNCSKYPGIDASKPISCRKIDQVVEHERRVVRQCSNVIDN--LGCIDRVGTNDVRIRYCHCTEDLCNSITAVKPQSFYYLFSLSALTF 118
[Close]
BLAST of Histone H1B vs. TrEMBL
Match: A0A430QQB8 (Uncharacterized protein OS=Schistosoma bovis OX=6184 GN=DC041_0006023 PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.003e-19
Identity = 48/113 (42.48%), Postives = 65/113 (57.52%), Query Frame = 1 
Query:  247 AIKCIVCNSYIDAMNCEPWDNFSFKSDC-------PPESKTCTKIIQEVHEQVRVIRQCSGAIENDDLKCYKRVGRKKVKMYYCHCDGDYCNE-SPSRNISYFMLASFSILGF 561
             I+C+VCNSY+D   CEPWD F+F ++C         +  +C KI Q V  + RV+RQCS  I+N  L C  RVG   V++ YCHC  D CN  +  +  S++ L S S L F
Sbjct:    8 GIQCVVCNSYLDGQLCEPWDQFTFITNCSKYPGIDASKPISCRKIDQVVEHERRVVRQCSNVIDN--LGCIDRVGTNDVRIRYCHCTEDLCNSITAVKPQSFYYLFSLSALTF 118
[Close]
BLAST of Histone H1B vs. TrEMBL
Match: A0A183P250 (Uncharacterized protein OS=Schistosoma mattheei OX=31246 GN=SMTD_LOCUS8436 PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.003e-19
Identity = 48/113 (42.48%), Postives = 65/113 (57.52%), Query Frame = 1 
Query:  247 AIKCIVCNSYIDAMNCEPWDNFSFKSDC-------PPESKTCTKIIQEVHEQVRVIRQCSGAIENDDLKCYKRVGRKKVKMYYCHCDGDYCNE-SPSRNISYFMLASFSILGF 561
             I+C+VCNSY+D   CEPWD F+F ++C         +  +C KI Q V  + RV+RQCS  I+N  L C  RVG   V++ YCHC  D CN  +  +  S++ L S S L F
Sbjct:    8 GIQCVVCNSYLDGQLCEPWDQFTFITNCSKYPGIDASKPISCRKIDQVVEHERRVVRQCSNVIDN--LGCIDRVGTNDVRIRYCHCTEDLCNSITAVKPQSFYYLFSLSALTF 118
[Close]
BLAST of Histone H1B vs. TrEMBL
Match: A0A094ZSD5 (Uncharacterized protein OS=Schistosoma haematobium OX=6185 GN=MS3_04262 PE=4 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.786e-19
Identity = 48/113 (42.48%), Postives = 65/113 (57.52%), Query Frame = 1 
Query:  247 AIKCIVCNSYIDAMNCEPWDNFSFKSDC-------PPESKTCTKIIQEVHEQVRVIRQCSGAIENDDLKCYKRVGRKKVKMYYCHCDGDYCNE-SPSRNISYFMLASFSILGF 561
             I+C+VCNSY+D   CEPWD F+F ++C         +  +C KI Q V  + RV+RQCS  I+N  L C  RVG   V++ YCHC  D CN  +  +  S++ L S S L F
Sbjct:   28 GIQCVVCNSYLDGQLCEPWDQFTFITNCSKYPGIDASKPISCRKIDQVVEHERRVVRQCSNVIDN--LGCIDRVGTNDVRIRYCHCTEDLCNSITAVKPQSFYYLFSLSALTF 138
[Close]
BLAST of Histone H1B vs. Planmine SMEST
Match: SMESG000071975.1 (SMESG000071975.1)

HSP 1 Score: 289.271 bits (739), Expect = 1.899e-100
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1 
Query:  169 MKVYMMTNNWFALVGFCFFLTISVGNAIKCIVCNSYIDAMNCEPWDNFSFKSDCPPESKTCTKIIQEVHEQVRVIRQCSGAIENDDLKCYKRVGRKKVKMYYCHCDGDYCNESPSRNISYFMLASFSILGFILFQNSS 582
            MKVYMMTNNWFALVGFCFFLTISVGNAIKCIVCNSYIDAMNCEPWDNFSFKSDCPPESKTCTKIIQEVHEQVRVIRQCSGAIENDDLKCYKRVGRKKVKMYYCHCDGDYCNESPSRNISYFMLASFSILGFILFQNSS
Sbjct:    1 MKVYMMTNNWFALVGFCFFLTISVGNAIKCIVCNSYIDAMNCEPWDNFSFKSDCPPESKTCTKIIQEVHEQVRVIRQCSGAIENDDLKCYKRVGRKKVKMYYCHCDGDYCNESPSRNISYFMLASFSILGFILFQNSS 138
[Close]
BLAST of Histone H1B vs. Planmine SMEST
Match: SMESG000071975.1 (SMESG000071975.1)

HSP 1 Score: 281.182 bits (718), Expect = 2.281e-97
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 
Query:  181 MMTNNWFALVGFCFFLTISVGNAIKCIVCNSYIDAMNCEPWDNFSFKSDCPPESKTCTKIIQEVHEQVRVIRQCSGAIENDDLKCYKRVGRKKVKMYYCHCDGDYCNESPSRNISYFMLASFSILGFILFQNSS 582
            MMTNNWFALVGFCFFLTISVGNAIKCIVCNSYIDAMNCEPWDNFSFKSDCPPESKTCTKIIQEVHEQVRVIRQCSGAIENDDLKCYKRVGRKKVKMYYCHCDGDYCNESPSRNISYFMLASFSILGFILFQNSS
Sbjct:    1 MMTNNWFALVGFCFFLTISVGNAIKCIVCNSYIDAMNCEPWDNFSFKSDCPPESKTCTKIIQEVHEQVRVIRQCSGAIENDDLKCYKRVGRKKVKMYYCHCDGDYCNESPSRNISYFMLASFSILGFILFQNSS 134
[Close]
BLAST of Histone H1B vs. Planmine SMEST
Match: SMESG000071975.1 (SMESG000071975.1)

HSP 1 Score: 278.87 bits (712), Expect = 1.865e-96
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1 
Query:  184 MTNNWFALVGFCFFLTISVGNAIKCIVCNSYIDAMNCEPWDNFSFKSDCPPESKTCTKIIQEVHEQVRVIRQCSGAIENDDLKCYKRVGRKKVKMYYCHCDGDYCNESPSRNISYFMLASFSILGFILFQNSS 582
            MTNNWFALVGFCFFLTISVGNAIKCIVCNSYIDAMNCEPWDNFSFKSDCPPESKTCTKIIQEVHEQVRVIRQCSGAIENDDLKCYKRVGRKKVKMYYCHCDGDYCNESPSRNISYFMLASFSILGFILFQNSS
Sbjct:    1 MTNNWFALVGFCFFLTISVGNAIKCIVCNSYIDAMNCEPWDNFSFKSDCPPESKTCTKIIQEVHEQVRVIRQCSGAIENDDLKCYKRVGRKKVKMYYCHCDGDYCNESPSRNISYFMLASFSILGFILFQNSS 133
[Close]
BLAST of Histone H1B vs. Planmine SMEST
Match: SMESG000003089.1 (SMESG000003089.1)

HSP 1 Score: 65.855 bits (159), Expect = 2.228e-13
Identity = 44/118 (37.29%), Postives = 60/118 (50.85%), Query Frame = 1 
Query:  184 MTNNWFALVGFCFFLTISVGNAIKCIVCNSYIDAMNCEPWDNFS--FKSDCPPESKT-CTKIIQEVHEQVRVI-RQCSGAIENDDLKCYKRVGRKKVKMYYCHCDGDYCNESPSRNIS 525
            M  N   +  FC  LT SV  +  C +CNS ID  +CE        FK  CP  +K  C  I+Q++ +   V+ R CS   E   L C  RVG  K+K  YC+C+GD+CN +    +S
Sbjct:    1 MKFNILLISVFCGLLTSSVFASENCYICNSLIDP-DCEVSAKLEQKFKFPCPATNKGYCLTIVQQIDKLGSVLQRNCSFNTEKSLLGCTDRVGVYKLKSRYCYCEGDFCNSANLMTVS 117
The following BLAST results are available for this feature:
BLAST of Histone H1B vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Histone H1B vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Histone H1B vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
CG63293.769e-1030.77gene:FBgn0033872 transcript:FBtr0087635[more]
CG63293.769e-1030.77gene:FBgn0033872 transcript:FBtr0339951[more]
CG63293.769e-1030.77gene:FBgn0033872 transcript:FBtr0087633[more]
CG63293.769e-1030.77gene:FBgn0033872 transcript:FBtr0087634[more]
CG63293.769e-1030.77gene:FBgn0033872 transcript:FBtr0087636[more]
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BLAST of Histone H1B vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Histone H1B vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Histone H1B vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Histone H1B vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Histone H1B vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A183LCG61.869e-1942.48Uncharacterized protein OS=Schistosoma margrebowie... [more]
A0A183JD936.573e-1942.48Uncharacterized protein OS=Schistosoma curassoni O... [more]
A0A430QQB87.003e-1942.48Uncharacterized protein OS=Schistosoma bovis OX=61... [more]
A0A183P2507.003e-1942.48Uncharacterized protein OS=Schistosoma mattheei OX... [more]
A0A094ZSD57.786e-1942.48Uncharacterized protein OS=Schistosoma haematobium... [more]
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BLAST of Histone H1B vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Histone H1B vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Histone H1B vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Histone H1B vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Histone H1B vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Histone H1B vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000071975.11.899e-100100.00SMESG000071975.1[more]
SMESG000071975.12.281e-97100.00SMESG000071975.1[more]
SMESG000071975.11.865e-96100.00SMESG000071975.1[more]
SMESG000003089.12.228e-1337.29SMESG000003089.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30027268 ID=SMED30027268|Name=Histone H1B|organism=Schmidtea mediterranea sexual|type=transcript|length=771bp
TTTGTTACTAAAAACAGAATTATTACTGACCTACTTCAATTAGGTTAGAA
GTTTTCTGATCCAGCAAATTATCGATTGGGATAGGAAATATTTCCTTGCC
GAAATTGTGTGAATTTCCATTTATATATCATAATTATCGCAAGTAAGATT
GATACAAGTTTATACGATATGAAAGTTTATATGATGACAAATAATTGGTT
TGCTCTTGTTGGATTTTGTTTTTTCTTAACAATATCAGTTGGAAATGCTA
TTAAATGTATTGTTTGTAATTCATATATTGATGCCATGAATTGTGAGCCA
TGGGACAATTTTTCTTTTAAGAGTGATTGTCCCCCAGAATCTAAAACATG
CACGAAAATAATTCAAGAAGTTCATGAACAAGTTCGAGTTATAAGACAGT
GCAGCGGTGCTATAGAAAATGATGACCTTAAATGTTACAAAAGAGTAGGC
CGCAAAAAAGTGAAAATGTATTATTGCCATTGCGATGGTGACTATTGCAA
TGAATCGCCTTCCAGGAATATTAGCTATTTTATGCTTGCTAGCTTTTCAA
TATTAGGATTTATTTTATTCCAAAACTCTAGTTAATAATTTAATTGGTAT
TAATAGTATAGGTTAATCCATTATTAAATGATATTTCTAGTTAGATTTTT
ATAAATTTATGTTAAAGCTCAAAAGCAATGAGAATTAAAGAGGATTGTAC
ATTTCATTTGTTTCGCTTTTTACGTAAAACTTTTATGCATTAATTATTGT
GGTAATAAATACAAATGAAAC
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protein sequence of SMED30027268-orf-1

>SMED30027268-orf-1 ID=SMED30027268-orf-1|Name=SMED30027268-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=139bp
MKVYMMTNNWFALVGFCFFLTISVGNAIKCIVCNSYIDAMNCEPWDNFSF
KSDCPPESKTCTKIIQEVHEQVRVIRQCSGAIENDDLKCYKRVGRKKVKM
YYCHCDGDYCNESPSRNISYFMLASFSILGFILFQNSS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000101muscle cell
PLANA:0000418head
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: molecular function
TermDefinition
GO:0016301kinase activity
Vocabulary: biological process
TermDefinition
GO:0016310phosphorylation
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33562FAMILY NOT NAMEDcoord: 14..134
NoneNo IPR availablePANTHERPTHR33562:SF2CROOKED-RELATEDcoord: 14..134
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..27
score: 0.883
NoneNo IPR availableSUPERFAMILYSSF57302Snake toxin-likecoord: 25..112
NoneNo IPR availableTMHMMTMhelixcoord: 117..134
NoneNo IPR availableTMHMMTMhelixcoord: 10..32