SMED30027223

Overview
NameSMED30027223
Smed IDSMED30027223
Length (bp)364
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30027223 (SMED30027223) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30027223 (SMED30027223) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30027223 (SMED30027223) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30027223 (SMED30027223) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30027223

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pigment cellSMED30027223 SmedASXL_004041SmedAsxl_ww_GCZZ01PMID:29158443
He et al., 2017
whole organism asexual adult RNA-sequencing evidence
pharynxSMED30027223 dd_Smed_v4_31_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30027223 dd_Smed_v4_31_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
tail regionSMED30027223 dd_Smed_v6_31_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
body wall musculatureSMED30027223 dd_Smed_v4_31_0_1dd_Smed_v4PMID:30471994
Scimone et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
goblet cellSMED30027223 dd_Smed_v6_31_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30027223 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.011129:313..813 +1743
v31.014181:317..821 -1574
Homology
BLAST of SMED30027223 vs. Ensembl Fly
Match: CG8560 (gene:FBgn0035781 transcript:FBtr0332725)

HSP 1 Score: 56.6102 bits (135), Expect = 2.626e-10
Identity = 37/115 (32.17%), Postives = 62/115 (53.91%), Query Frame = 2
Query:   17 LFKALILTGLLSVCIAMKSYEGYKVIELNLKDEREVKLILRLTEEYLADIWKGP-SFHVSTHIMLSPSTFKPFTDKLTSSGIKYKIIIENVQETLE------*NFMKQNLRSSSK 340
            LF  ++L  L SV +A+++Y+GYK+ ++N ++  E +L+LRL+     D +  P S   S+ +M+ P   + F   L   G+ Y +I EN  E+L        N    NLRS+ +
Sbjct:    4 LFAVVLL--LASVALAVENYDGYKIYDINARNAFEKQLLLRLSGNEAYDFFDLPRSLDASSRVMVKPEDQEGFEHLLEKYGVNYSVINENFGESLRQERDENQNQRLMNLRSAER 116          
BLAST of SMED30027223 vs. Ensembl Fly
Match: CG8560 (gene:FBgn0035781 transcript:FBtr0076868)

HSP 1 Score: 56.6102 bits (135), Expect = 2.626e-10
Identity = 37/115 (32.17%), Postives = 62/115 (53.91%), Query Frame = 2
Query:   17 LFKALILTGLLSVCIAMKSYEGYKVIELNLKDEREVKLILRLTEEYLADIWKGP-SFHVSTHIMLSPSTFKPFTDKLTSSGIKYKIIIENVQETLE------*NFMKQNLRSSSK 340
            LF  ++L  L SV +A+++Y+GYK+ ++N ++  E +L+LRL+     D +  P S   S+ +M+ P   + F   L   G+ Y +I EN  E+L        N    NLRS+ +
Sbjct:    4 LFAVVLL--LASVALAVENYDGYKIYDINARNAFEKQLLLRLSGNEAYDFFDLPRSLDASSRVMVKPEDQEGFEHLLEKYGVNYSVINENFGESLRQERDENQNQRLMNLRSAER 116          
BLAST of SMED30027223 vs. Ensembl Zebrafish
Match: cpa5 (carboxypeptidase A5 [Source:ZFIN;Acc:ZDB-GENE-020514-1])

HSP 1 Score: 45.4394 bits (106), Expect = 3.145e-6
Identity = 33/103 (32.04%), Postives = 49/103 (47.57%), Query Frame = 2
Query:   23 KALILTGLLSVCIAMKSYEGYKVIELNLKDEREVKLILRLTE--EYLA-DIWKGP-------SFHVSTHIMLSPSTFKPFTDKLTSSGIKYKIIIENVQETLE 301
            + L+L  L       K++EG +V  +  KDE ++ L+  LTE  E+L   +W  P         HV  H + +   F      L  + I Y I+IENVQE L+
Sbjct:    3 RLLVLIALFVAVFGKKTFEGDQVFRITPKDEAQIDLLKELTEEGEHLGLSVWMEPILESLPLDLHVPFHSLQAVRAF------LAYNQIPYHIMIENVQELLD 99          
BLAST of SMED30027223 vs. Ensembl Zebrafish
Match: cpa1 (carboxypeptidase A1 (pancreatic) [Source:ZFIN;Acc:ZDB-GENE-050522-438])

HSP 1 Score: 44.2838 bits (103), Expect = 7.362e-6
Identity = 34/120 (28.33%), Postives = 53/120 (44.17%), Query Frame = 2
Query:   29 LILTGLLSVCIAMKSYEGYKVIELNLKDEREVKLILRLTEEYL--ADIWKGPS-------FHVSTHIMLSPSTFKPFTDKLTSSGIKYKIIIENVQETL-E*NFMKQNLRSSSKKEDSFI 358
            L+LT L        ++EG +V+ +N K+  ++ L+  LTE  L   D W  P+        HV  H + +   F      L  + I Y I+IENVQ+ + E        R   +  D F+
Sbjct:    5 LVLTALFVAVFGKVTFEGDQVLRINAKNAEQISLLKELTEADLLGLDFWMTPARESLPVDLHVPFHSLQAVRAF------LAYNQIPYHIMIENVQDLVDEEQLQMLKYRGFPRSTDDFV 118          
BLAST of SMED30027223 vs. TrEMBL
Match: B4HV67 (GM13761 OS=Drosophila sechellia OX=7238 GN=Dsec\GM13761 PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.165e-7
Identity = 39/115 (33.91%), Postives = 61/115 (53.04%), Query Frame = 2
Query:   17 LFKALILTGLLSVCIAMKSYEGYKVIELNLKDEREVKLILRLTEEYLADIWKGP-SFHVSTHIMLSPSTFKPFTDKLTSSGIKYKIIIENVQETLE------*NFMKQNLRSSSK 340
            LF A++L  L SV +A+  YEGYK+ ++N ++  E +L+LRL+     D +  P S   S+ +M+ P   + F   L   G+ Y +I EN  E+L        N    NLRS+ +
Sbjct:    4 LFAAVLL--LASVALAVDDYEGYKIYDINARNSFEKQLLLRLSGNEAYDFFDLPRSLDASSRVMVKPEDQEGFEHLLEKYGVNYSVINENFGESLRQERDENQNQRLMNLRSAER 116          
BLAST of SMED30027223 vs. TrEMBL
Match: A0A0L0CSG6 (Peptidase_M14 domain-containing protein OS=Lucilia cuprina OX=7375 GN=FF38_05970 PE=4 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 4.724e-7
Identity = 34/112 (30.36%), Postives = 61/112 (54.46%), Query Frame = 2
Query:    5 NQNMLFKALILTGLLSVCIAMKSYEGYKVIELNLKDEREVKLILRLTEEYLADIWKGPSFHVSTHIMLSPSTFKPFTDKLTSSGIKYKIIIENVQETLE*NFMKQNLRSSSK 340
            N  ++   L+   +  VCI   SY+GYK+ EL  K+E+++ L+  L ++      +   F  S  +++ P++F+ F + L    +KYKI+ E+V +TL+ NF    L  + K
Sbjct: 1238 NFRLMVVGLLWANIYFVCINANSYDGYKLYELLPKEEKDLNLLKNLNQQE-----ERYDFLNSQTVIVEPNSFREFENTLNKYNLKYKIVDEDVGKTLKRNFEVNGLLKTLK 1344          
BLAST of SMED30027223 vs. TrEMBL
Match: Q961J8 (GH20109p OS=Drosophila melanogaster OX=7227 GN=Dmel\CG8560 PE=1 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 7.803e-7
Identity = 37/115 (32.17%), Postives = 62/115 (53.91%), Query Frame = 2
Query:   17 LFKALILTGLLSVCIAMKSYEGYKVIELNLKDEREVKLILRLTEEYLADIWKGP-SFHVSTHIMLSPSTFKPFTDKLTSSGIKYKIIIENVQETLE------*NFMKQNLRSSSK 340
            LF  ++L  L SV +A+++Y+GYK+ ++N ++  E +L+LRL+     D +  P S   S+ +M+ P   + F   L   G+ Y +I EN  E+L        N    NLRS+ +
Sbjct:    4 LFAVVLL--LASVALAVENYDGYKIYDINARNAFEKQLLLRLSGNEAYDFFDLPRSLDASSRVMVKPEDQEGFEHLLEKYGVNYSVINENFGESLRQERDENQNQRLMNLRSAER 116          
BLAST of SMED30027223 vs. TrEMBL
Match: A0A232EFF3 (Uncharacterized protein OS=Trichomalopsis sarcophagae OX=543379 GN=TSAR_013263 PE=4 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.173e-6
Identity = 31/90 (34.44%), Postives = 49/90 (54.44%), Query Frame = 2
Query:   44 LLSVCIAMK---SYEGYKVIELNLKDEREVKLILRLTEEYLA-DIWKGPSFHVSTHIMLSPSTFKPFTDKLTSSGIKYKIIIENVQETLE 301
            L++  IA     SYE YKV ++ +K + E+K +  L E       W GPS  + T IM++      FT+ +  SGIKY+  ++NV+  +E
Sbjct:    9 LMTATIAAAEKVSYENYKVFQMVIKKDDELKFLKDLVESRDDLSFWSGPSGSIPTDIMVAAKALDYFTEHINDSGIKYEKFVDNVEALIE 98          
BLAST of SMED30027223 vs. TrEMBL
Match: B4QKE7 (GD13057 OS=Drosophila simulans OX=7240 GN=Dsim\GD13057 PE=4 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.292e-6
Identity = 38/115 (33.04%), Postives = 60/115 (52.17%), Query Frame = 2
Query:   17 LFKALILTGLLSVCIAMKSYEGYKVIELNLKDEREVKLILRLTEEYLADIWKGP-SFHVSTHIMLSPSTFKPFTDKLTSSGIKYKIIIENVQETLE------*NFMKQNLRSSSK 340
            LF A++L  L SV +A+  YEGYK+ ++N ++  E +L+LRL+     D +  P S    + +M+ P   + F   L   G+ Y +I EN  E+L        N    NLRS+ +
Sbjct:    4 LFAAVLL--LASVALAVDDYEGYKIYDINARNAFEKQLLLRLSGNEAYDFFDLPRSLDAPSRVMVKPEDQEGFEHLLEKYGVNYLVINENFGESLRQERDENQNQRLMNLRSAER 116          
BLAST of SMED30027223 vs. Ensembl Cavefish
Match: ENSAMXT00000011968.2 (carboxypeptidase A1-like [Source:NCBI gene;Acc:111195717])

HSP 1 Score: 44.669 bits (104), Expect = 5.504e-6
Identity = 31/95 (32.63%), Postives = 54/95 (56.84%), Query Frame = 2
Query:   29 LILTGLLSVCIAMKSYEGYKVIELNLKDEREVKLILRLTE-EYLA-DIWKGPSFHVSTHIMLS-PST-FKPFTDKLTSSGIKYKIIIENVQETLE 301
            L+L  L+      KS+EG++V+ +  +D+ ++ L+  LT+  YL  D W+ P  H S  + +S PST  +     L ++ I Y I+I N+Q+ L+
Sbjct:    5 LVLASLVVAVFGRKSFEGHQVLRITAEDDLQINLLKNLTQLAYLKLDFWREP-IHESLPVDVSVPSTSLQTLKSFLKNNNILYTIMIHNIQDLLD 98          
BLAST of SMED30027223 vs. Planmine SMEST
Match: SMESG000066355.1 (SMESG000066355.1)

HSP 1 Score: 194.897 bits (494), Expect = 5.398e-66
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 2
Query:   14 MLFKALILTGLLSVCIAMKSYEGYKVIELNLKDEREVKLILRLTEEYLADIWKGPSFHVSTHIMLSPSTFKPFTDKLTSSGIKYKIIIENVQETLE 301
            MLFKALILTGLLSVCIAMKSYEGYKVIELNLKDEREVKLILRLTEEYLADIWKGPSFHVSTHIMLSPSTFKPFTDKLTSSGIKYKIIIENVQETLE
Sbjct:    1 MLFKALILTGLLSVCIAMKSYEGYKVIELNLKDEREVKLILRLTEEYLADIWKGPSFHVSTHIMLSPSTFKPFTDKLTSSGIKYKIIIENVQETLE 96          
BLAST of SMED30027223 vs. Planmine SMEST
Match: SMESG000066357.1 (SMESG000066357.1)

HSP 1 Score: 169.088 bits (427), Expect = 8.394e-56
Identity = 86/97 (88.66%), Postives = 90/97 (92.78%), Query Frame = 2
Query:   14 MLFKALILTGLLSVCIAMKSYEGYKVIELNLKDEREVKLILRLTEEYLADIW-KGPSFHVSTHIMLSPSTFKPFTDKLTSSGIKYKIIIENVQETLE 301
            MLFKALILT LLSVCIAMKSYEGYKVIELNLKDEREVKLI RL +EYLADIW +GPSF  ST+IMLSPSTFKPFTDKLTSSGIKYKI IENVQ+TLE
Sbjct:    1 MLFKALILTALLSVCIAMKSYEGYKVIELNLKDEREVKLIHRLIKEYLADIWIQGPSFRFSTYIMLSPSTFKPFTDKLTSSGIKYKIKIENVQKTLE 97          
BLAST of SMED30027223 vs. Planmine SMEST
Match: SMESG000066359.1 (SMESG000066359.1)

HSP 1 Score: 141.354 bits (355), Expect = 1.919e-44
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 2
Query:   68 KSYEGYKVIELNLKDEREVKLILRLTEEYLADIWKGPSFHVSTHIMLSPSTFKPFTDKLTSSGIKYKIIIENVQETLE 301
            ++Y  YKVIELNLKDEREVKLILRLTEEYLADIWKGPS  +STHIMLSPSTFKPFTDKLTSSGIKYKI IENVQ+TLE
Sbjct:   54 QNYHKYKVIELNLKDEREVKLILRLTEEYLADIWKGPSVRISTHIMLSPSTFKPFTDKLTSSGIKYKIKIENVQKTLE 131          
BLAST of SMED30027223 vs. Planmine SMEST
Match: SMESG000066311.1 (SMESG000066311.1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.903e-24
Identity = 48/99 (48.48%), Postives = 69/99 (69.70%), Query Frame = 2
Query:    5 NQNMLFKALILTGLLSVCIAMKSYEGYKVIELNLKDEREVKLILRLTEEYLADIWKGPSFHVSTHIMLSPSTFKPFTDKLTSSGIKYKIIIENVQETLE 301
            N  ++F AL    LL    A++SY GYKVIE++LK + E+K +L+++E+Y ADIWKGPS   +TH+MLSP  F  F + LT   I+YKI+I NVQ+ ++
Sbjct:    2 NLRLIFVAL----LLGATQALESYNGYKVIEMSLKTDEEIKHVLQISEKYQADIWKGPSKITTTHVMLSPEYFDGFIESLTKYEIQYKIMINNVQKIID 96          
BLAST of SMED30027223 vs. Planmine SMEST
Match: SMESG000066416.1 (SMESG000066416.1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.885e-18
Identity = 34/92 (36.96%), Postives = 55/92 (59.78%), Query Frame = 2
Query:   14 MLFKALILTGLLSVCIAMKSYEGYKVIELNLKDEREVKLILRLTEEYLADIWKGPSFHVSTHIMLSPSTFKPFTDKLTSSGIKYKIIIENVQ 289
            M  K LIL  +L+VC+A     GYKV+ELNL +++EV+ +  L      + WKGP++   THIML+    K     L  + + YK++I++++
Sbjct:    1 MFLKVLILATVLAVCLAEFPLRGYKVVELNLHNQKEVRFVANLAVYLKGNFWKGPTYKGPTHIMLNALVAKKLAKILKYAKVDYKVLIDDLE 92          
The following BLAST results are available for this feature:
BLAST of SMED30027223 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027223 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027223 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
CG85602.626e-1032.17gene:FBgn0035781 transcript:FBtr0332725[more]
CG85602.626e-1032.17gene:FBgn0035781 transcript:FBtr0076868[more]
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BLAST of SMED30027223 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
cpa53.145e-632.04carboxypeptidase A5 [Source:ZFIN;Acc:ZDB-GENE-0205... [more]
cpa17.362e-628.33carboxypeptidase A1 (pancreatic) [Source:ZFIN;Acc:... [more]
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BLAST of SMED30027223 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027223 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027223 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027223 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
B4HV671.165e-733.91GM13761 OS=Drosophila sechellia OX=7238 GN=Dsec\GM... [more]
A0A0L0CSG64.724e-730.36Peptidase_M14 domain-containing protein OS=Lucilia... [more]
Q961J87.803e-732.17GH20109p OS=Drosophila melanogaster OX=7227 GN=Dme... [more]
A0A232EFF31.173e-634.44Uncharacterized protein OS=Trichomalopsis sarcopha... [more]
B4QKE71.292e-633.04GD13057 OS=Drosophila simulans OX=7240 GN=Dsim\GD1... [more]
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BLAST of SMED30027223 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSAMXT00000011968.25.504e-632.63carboxypeptidase A1-like [Source:NCBI gene;Acc:111... [more]
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BLAST of SMED30027223 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027223 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027223 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027223 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027223 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000066355.15.398e-66100.00SMESG000066355.1[more]
SMESG000066357.18.394e-5688.66SMESG000066357.1[more]
SMESG000066359.11.919e-4488.46SMESG000066359.1[more]
SMESG000066311.13.903e-2448.48SMESG000066311.1[more]
SMESG000066416.17.885e-1836.96SMESG000066416.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30027223 ID=SMED30027223|Name=SMED30027223|organism=Schmidtea mediterranea sexual|type=transcript|length=364bp
AAATAATCAAAACATGTTGTTTAAAGCTTTGATATTAACTGGACTTTTGT
CTGTTTGCATTGCAATGAAATCATATGAAGGATACAAGGTGATTGAACTC
AATCTAAAAGATGAAAGAGAAGTGAAACTTATTCTTCGATTAACAGAAGA
ATATTTGGCCGACATATGGAAAGGTCCAAGCTTCCATGTTTCAACTCATA
TTATGTTAAGCCCGTCAACCTTCAAACCATTCACCGATAAGTTGACATCA
TCAGGAATTAAATACAAAATCATAATTGAAAATGTTCAAGAAACATTAGA
ATAAAATTTTATGAAACAAAACCTTCGATCTTCATCTAAGAAAGAAGATT
CATTTATATAAAAA
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protein sequence of SMED30027223-orf-1

>SMED30027223-orf-1 ID=SMED30027223-orf-1|Name=SMED30027223-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=101bp
NNQNMLFKALILTGLLSVCIAMKSYEGYKVIELNLKDEREVKLILRLTEE
YLADIWKGPSFHVSTHIMLSPSTFKPFTDKLTSSGIKYKIIIENVQETLE
*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000067goblet cell
PLANA:0000240body wall musculature
PLANA:0000421tail
PLANA:0002075pigment cell
Vocabulary: INTERPRO
TermDefinition
IPR036990M14A-like_propep
IPR003146M14A_act_pep
IPR009020Propept_inh
Vocabulary: biological process
TermDefinition
GO:0006508proteolysis
Vocabulary: molecular function
TermDefinition
GO:0004180carboxypeptidase activity
GO:0004181metallocarboxypeptidase activity
GO:0008233peptidase activity
GO:0008237metallopeptidase activity
GO:0008270zinc ion binding
GO:0016787hydrolase activity
GO:0046872metal ion binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003146Carboxypeptidase, activation peptidePFAMPF02244Propep_M14coord: 33..100
e-value: 6.4E-14
score: 52.1
IPR036990Metallocarboxypeptidase-like, propeptideGENE3DG3DSA:3.30.70.340coord: 20..100
e-value: 8.0E-19
score: 69.3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.809
NoneNo IPR availableSUPERFAMILYSSF54897Protease propeptides/inhibitorscoord: 24..100