DNA-directed RNA polymerase subunit beta

Overview


Name	DNA-directed RNA polymerase subunit beta
Smed ID	SMED30027218
Length (bp)	3490

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of DNA-directed RNA polymerase subunit beta (SMED30027218) t-SNE clustered cells

Violin plots show distribution of expression levels for DNA-directed RNA polymerase subunit beta (SMED30027218) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of DNA-directed RNA polymerase subunit beta (SMED30027218) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for DNA-directed RNA polymerase subunit beta (SMED30027218) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30027218

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 6

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
Category 2 cell	SMED30027218	h1SMcG0008962	SmedASXL_006583	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X1 cell	SMED30027218	h1SMcG0008962	SmedASXL_006583	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30027218	h1SMcG0008962	SmedASXL_006583	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
parenchyma	SMED30027218	h1SMcG0008962	SmedASXL_006583	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
Smed sexual biotype	SMED30027218	h1SMcG0008962	Contig35476	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30027218	h1SMcG0008962	Contig35476	uc_Smed_v2	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Human
Match: POLR3B (RNA polymerase III subunit B [Source:HGNC Symbol;Acc:HGNC:30348])

HSP 1 Score: 830.091 bits (2143), Expect = 0.000e+0
Identity = 474/1149 (41.25%), Postives = 679/1149 (59.09%), Query Frame = 1

Query:   73 MDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSK-FFVQISNIKVDKPAIFE-YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAK--YLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDD---LGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGL------------FKSVTSKCFTDVIKDNEFLAIPVRKDRRQHAI-DDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYR-MERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRH 3456
            ++ K  L+  +     LV+ H+DSFN+F+ VE+ KI+K + +V   +   ++++  NI V  P + E + +  P+ P +CR+R+ TY+A +TVDI+Y     ++I+N    IGR+PIMLRS  C L G +  E  + NEC  D GGYFI KG E+V L+QEQ++KNR+I+E     +KG +                VTS T   K++T +    G FY++++   E IP+ ++F A+ + + ++I + IG E  +      S+EE  +  IF+Q QAL ++  +++    ++      P   + EE     AR+ +   +L HVP  V   ++RAK  Y  +M RR++LA+ G    DDRD+YG KRLE+ G  L+L+FED F+   S ++    + I   +A Q D  +++RQ  IT GM   I TGNW L RF M R GVTQVL+RLSY+  LG + RISSQFEK RK+SG R++  SQ G +C +DTPEGEACGLVKNLA +  IT ++  E+   +++       D     G       + L+ +NG  +G       +    R  RRAG I+  VS+        +++ SDGGR+ RPYIIV     + +T    +E+  G R+++D +   ++EY+D  E   +C +A  E  + +  THL+I+P T LGV A LIP+PHHNQSPRNTYQCAMGKQA+G I  NQ  R D   + L  PQ+P+  +    L  ++ LPAGQNA VA++ + GYDIEDA+V+NKASL+RG              K  T++ F  V+     L    RK   +H I D DG  + G  + N  ++++K +  V    +  +   +    K  P  Y G+  + + + + + +     + ++   Q R+PE+GDK SSRHGQKGV   +V  +DMP+ + G+ PDIIMNPHGFPSRMTVGKLIELLA K+ V+DG +   +AF   G KV   D    +  HG++  GK+ + SG  G  +E  +Y GPV+YQ+LKHMV DK+HAR  G    LTRQP  GRS DGGLR+GEMERDCLIGYGAS +L ER+M+SSD F   VC +CG+L  S  WC  C+SS HVSS+ +PYA KLL QEL ++ I PRL LS++
Sbjct:   23 VEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRN-ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEA---DRKGAVGA-------------SVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVR----RQRMWGGGPKKTKIEE-----ARELLASTILTHVP--VKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDM--EDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPA-VTNKHMEELAQGYRNFEDFLHESLVEYLDVNE-ENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVM--GPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAF--GGSKVK--DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSG-WCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSKY 1131

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Human
Match: POLR3B (RNA polymerase III subunit B [Source:HGNC Symbol;Acc:HGNC:30348])

HSP 1 Score: 801.971 bits (2070), Expect = 0.000e+0
Identity = 456/1099 (41.49%), Postives = 648/1099 (58.96%), Query Frame = 1

Query:  220 FFVQISNIKVDKPAIFE-YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAK--YLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDD---LGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGL------------FKSVTSKCFTDVIKDNEFLAIPVRKDRRQHAI-DDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYR-MERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRH 3456
            ++++  NI V  P + E + +  P+ P +CR+R+ TY+A +TVDI+Y     ++I+N    IGR+PIMLRS  C L G +  E  + NEC  D GGYFI KG E+V L+QEQ++KNR+I+E     +KG +                VTS T   K++T +    G FY++++   E IP+ ++F A+ + + ++I + IG E  +      S+EE  +  IF+Q QAL ++  +++    ++      P         +  AR+ +   +L HVP  V   ++RAK  Y  +M RR++LA+ G    DDRD+YG KRLE+ G  L+L+FED F+   S ++    + I   +A Q D  +++RQ  IT GM   I TGNW L RF M R GVTQVL+RLSY+  LG + RISSQFEK RK+SG R++  SQ G +C +DTPEGEACGLVKNLA +  IT ++  E+   +++       D     G       + L+ +NG  +G       +    R  RRAG I+  VS+        +++ SDGGR+ RPYIIV     + +T    +E+  G R+++D +   ++EY+D  E   +C +A  E  + +  THL+I+P T LGV A LIP+PHHNQSPRNTYQCAMGKQA+G I  NQ  R D   + L  PQ+P+  +    L  ++ LPAGQNA VA++ + GYDIEDA+V+NKASL+RG              K  T++ F  V+     L    RK   +H I D DG  + G  + N  ++++K +  V    +  +   +    K  P  Y G+  + + + + + +     + ++   Q R+PE+GDK SSRHGQKGV   +V  +DMP+ + G+ PDIIMNPHGFPSRMTVGKLIELLA K+ V+DG +   +AF   G KV   D    +  HG++  GK+ + SG  G  +E  +Y GPV+YQ+LKHMV DK+HAR  G    LTRQP  GRS DGGLR+GEMERDCLIGYGAS +L ER+M+SSD F   VC +CG+L  S  WC  C+SS HVSS+ +PYA KLL QEL ++ I PRL LS++
Sbjct:   15 WYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRN-ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEA---DRKGAVGA-------------SVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVR----RQRMWGGGPKKT-----KIEEARELLASTILTHVP--VKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDM--EDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPA-VTNKHMEELAQGYRNFEDFLHESLVEYLDVNE-ENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVM--GPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAF--GGSKVK--DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSG-WCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSKY 1073

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Human
Match: POLR2B (RNA polymerase II subunit B [Source:HGNC Symbol;Acc:HGNC:9188])

HSP 1 Score: 622.854 bits (1605), Expect = 0.000e+0
Identity = 407/1175 (34.64%), Postives = 619/1175 (52.68%), Query Frame = 1

Query:   91 LVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSS------------KFFVQISNIKVDKPAIFEYQ-IKIPLYPQQCRVRNFTYAADVTVDIQY----PGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITK---KGGIKVPL-SEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNW-HLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVN---------LPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXX-XXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQ--EILAGLRDWDDLVRSGIIEYIDALEGYAECL------VAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDV-----IKDNEFLAIPVRKDRR--QHAI----DDDGTAAIGSVIRNGDIVISKIVN-PVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGH-YRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLA-----TSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRL 3441
            ++  Y +   LVR  LDSF+ F+++ + +IV+    +D+ +             ++ ++   I + KP  +E      P+ P + R+RN TY+A + VDI       G      +++K  IG+IPIMLRS  C L GL++ +L   NEC  D GGYFI  G+E+V + QE+MA N + +   K +K    G  +  L +   P   I   + +       K+ + +             + +P+ ++F AL   + +DI E I  + E   E++  V+ S++     Q Q          VA+N        P     +E+ +  A++ + + +L HV  S    + +A +LG M  R+LLA  G    DDRD YG KRL++ G  LA +F   F++L+  +++   K I+  K   L+    I+  +I++G+   + TGNW    +   AR+GV+QVLNRL++  TL HL R++S   +  K++  R +H +  G VC A+TPEG A GLVKNLA +  I+V          L     E LE     + +D    F          VNG  +G    P  +   LR+ RR+  +I   VS+  + +   + + +D GR+ RP +IV    +    R + Q  E       W DLV SG++EYID LE     L      +  +E      +TH +I P+  LGV AS+IPFP HNQSPRNTYQ AMGKQA+GV  TN   R D   H L  PQ+PL  +       ++ LPAG N+IVAI  + GY+ ED++++N+++++RG F+SV  + + +          E    P R+  +  +HAI    DDDG  A G  +   D++I K V  P  +  + +T  ++    +   T    SE  IV + + T +   Y+  +++   +R P++GDK +SRHGQKG        +DMP+T +G+ PDII+NPH  PSRMT+G LIE L  K +   G   D++ F++A   VN     +++  +G+ + G EV+ +G  G  +   ++ GP +YQRLKHMV DK+H+R  G  Q L RQP  GRS DGGLR GEMERDC I +GA+Q L+ER+  +SDP++  VC  CG++A     T    C+ CR+   +S V MPYA KLL QELM++ I PR+
Sbjct:   29 VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQR---IVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFE-DPEMMEMVKPSLDEAFVIQEQ---------NVALNFIGSRGAKPG--VTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELA--IKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIF----------VNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEST--NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDA---VNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1171

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Query:   91 LVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSS------------KFFVQISNIKVDKPAIFEYQ-IKIPLYPQQCRVRNFTYAADVTVDIQY----PGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITK---KGGIKVPL-SEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNW-HLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVN---------LPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXX-XXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQ--EILAGLRDWDDLVRSGIIEYIDALEGYAECL------VAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDV-----IKDNEFLAIPVRKDRR--QHAI----DDDGTAAIGSVIRNGDIVISKIVN-PVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGH-YRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLA-----TSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRL 3441
            ++  Y +   LVR  LDSF+ F+++ + +IV+    +D+ +             ++ ++   I + KP  +E      P+ P + R+RN TY+A + VDI       G      +++K  IG+IPIMLRS  C L GL++ +L   NEC  D GGYFI  G+E+V + QE+MA N + +   K +K    G  +  L +   P   I   + +       K+ + +             + +P+ ++F AL   + +DI E I  + E   E++  V+ S++     Q Q          VA+N        P     +E+ +  A++ + + +L HV  S    + +A +LG M  R+LLA  G    DDRD YG KRL++ G  LA +F   F++L+  +++   K I+  K   L+    I+  +I++G+   + TGNW    +   AR+GV+QVLNRL++  TL HL R++S   +  K++  R +H +  G VC A+TPEG A GLVKNLA +  I+V          L     E LE     + +D    F          VNG  +G    P  +   LR+ RR+  +I   VS+  + +   + + +D GR+ RP +IV    +    R + Q  E       W DLV SG++EYID LE     L      +  +E      +TH +I P+  LGV AS+IPFP HNQSPRNTYQ AMGKQA+GV  TN   R D   H L  PQ+PL  +       ++ LPAG N+IVAI  + GY+ ED++++N+++++RG F+SV  + + +          E    P R+  +  +HAI    DDDG  A G  +   D++I K V  P  +  + +T  ++    +   T    SE  IV + + T +   Y+  +++   +R P++GDK +SRHGQKG        +DMP+T +G+ PDII+NPH  PSRMT+G LIE L  K +   G   D++ F++A   VN     +++  +G+ + G EV+ +G  G  +   ++ GP +YQRLKHMV DK+H+R  G  Q L RQP  GRS DGGLR GEMERDC I +GA+Q L+ER+  +SDP++  VC  CG++A     T    C+ CR+   +S V MPYA KLL QELM++ I PR+
Sbjct:   22 VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQR---IVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFE-DPEMMEMVKPSLDEAFVIQEQ---------NVALNFIGSRGAKPG--VTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELA--IKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIF----------VNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEST--NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDA---VNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1164

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Query:   91 LVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSS------------KFFVQISNIKVDKPAIFEYQ-IKIPLYPQQCRVRNFTYAADVTVDIQY----PGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITK---KGGIKVPL-SEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNW-HLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVN---------LPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXX-XXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQ--EILAGLRDWDDLVRSGIIEYIDALEGYAECL------VAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDV-----IKDNEFLAIPVRKDRR--QHAI----DDDGTAAIGSVIRNGDIVISKIVN-PVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGH-YRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLA-----TSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRL 3441
            ++  Y +   LVR  LDSF+ F+++ + +IV+    +D+ +             ++ ++   I + KP  +E      P+ P + R+RN TY+A + VDI       G      +++K  IG+IPIMLRS  C L GL++ +L   NEC  D GGYFI  G+E+V + QE+MA N + +   K +K    G  +  L +   P   I   + +       K+ + +             + +P+ ++F AL   + +DI E I  + E   E++  V+ S++     Q Q          VA+N        P     +E+ +  A++ + + +L HV  S    + +A +LG M  R+LLA  G    DDRD YG KRL++ G  LA +F   F++L+  +++   K I+  K   L+    I+  +I++G+   + TGNW    +   AR+GV+QVLNRL++  TL HL R++S   +  K++  R +H +  G VC A+TPEG A GLVKNLA +  I+V          L     E LE     + +D    F          VNG  +G    P  +   LR+ RR+  +I   VS+  + +   + + +D GR+ RP +IV    +    R + Q  E       W DLV SG++EYID LE     L      +  +E      +TH +I P+  LGV AS+IPFP HNQSPRNTYQ AMGKQA+GV  TN   R D   H L  PQ+PL  +       ++ LPAG N+IVAI  + GY+ ED++++N+++++RG F+SV  + + +          E    P R+  +  +HAI    DDDG  A G  +   D++I K V  P  +  + +T  ++    +   T    SE  IV + + T +   Y+  +++   +R P++GDK +SRHGQKG        +DMP+T +G+ PDII+NPH  PSRMT+G LIE L  K +   G   D++ F++A   VN     +++  +G+ + G EV+ +G  G  +   ++ GP +YQRLKHMV DK+H+R  G  Q L RQP  GRS DGGLR GEMERDC I +GA+Q L+ER+  +SDP++  VC  CG++A     T    C+ CR+   +S V MPYA KLL QELM++ I PR+
Sbjct:   29 VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQR---IVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFE-DPEMMEMVKPSLDEAFVIQEQ---------NVALNFIGSRGAKPG--VTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELA--IKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIF----------VNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEST--NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDA---VNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1171

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Celegans
Match: rpc-2 (DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q27492])

HSP 1 Score: 830.861 bits (2145), Expect = 0.000e+0
Identity = 482/1165 (41.37%), Postives = 703/1165 (60.34%), Query Frame = 1

Query:   73 MDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSS-KFFVQISNIKVDKPAIFE--YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQE------ICRRVLNHVPGSVGNLSYRAKYLGLMTRRIL---LAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDDLGTFRHQSGMN-----LIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERG-----LFKSV--TSKCFTDVIKDNEF---LAIPVRKDRRQHA-IDDDGTAAIGSVIRNGDIVISK---IVNPVKDPVVAATE-----ASKVMDPKPAPTCYSGSEPTIVVEKITTF-DGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRH 3456
            ++ K  LV  +     LV+ HL SF+HFV+ E+  I+ ++ ++   ++  F+++  +I++ KP+  E        + PQ+CR+R+ TY+A ++VDI+Y   GN+ +  +  +IGR+PIMLRS  C L  L+ EEL R  EC YD GGYF+ KG+E+V L+QEQ++KNR+++ +                   +++ C V S T   K+KT V    G + V+++   + +P+ ++F A+ + +  DI  +IG E +  +    ++EESI  G+++Q+QAL ++  ++K       +  T   S+     S+L   +E      +   ++ H+    GN   +A YLGLMTRR++   L ENGL   DDRDFYG KRLE+ G+ L+L+FED F+   S L+      +    A  LD  +++RQ +IT  +   + TGNW + RF M R GVTQVL+RLSY+  LG + RI+S FEK RK+SG R++  SQ G +C +DTPEGEACGLVKNLA +  IT +  ++E+  L + +  S  +DL    H S +N     LI +NGV IG    P  +  A+R+ RR+GL+   VSV       ++ + SDGGR+ RPYIIV N G   LT+A  QE+  G   ++D V  GI+EY+D  E   + L+A    ++  + THL+I+P T LGV A LIP+PHHNQSPRNTYQCAMGKQA+G IA NQ KR D   + L  PQRPL  S    LTN++ LPAG N I+A++ + GYDIEDA+V+NKASL+RG     ++K V  T+K + +   D      L    RK   +H  +D +G    G+ I     +I+K   +V+    P  +A+      A + +D K     Y    P+     + T+ +    + +V   Q R+PE+GDK SSRHGQKGV   +   +DMP+ + G+VPD+IMNPHG+PSRMTVGKL+ELL+ K+ V++G Y   +AF   G +V   D    + A G++  GK+++ SG  G  +   +Y GP++YQ+LKHMV DK+HAR  G    LTRQP  GRS +GGLR+GEMERDCLI YGAS +L ER+M+SSD F+  VC  CG++  SK WCQ CRSS+ ++++ +PYA KLL QEL ++ I PRL L+R+
Sbjct:   25 LEDKWLLVPAFLKVRGLVKQHLVSFDHFVQEEIRSIMLSNQKITSDANPNFYLKYLDIRIGKPSSEEGLNMTHDKITPQECRLRDMTYSAPISVDIEYTR-GNQRVFKKDLIIGRMPIMLRSSKCILRDLAEEELARVQECPYDPGGYFVVKGSEKVILIQEQLSKNRIMVGRNS----------------SKELQCEVLSSTSERKSKTYVTMKKGKYSVRHNQLTDDVPVSIIFKAMGVESDFDIVSTIGHEEKYVSAFAQTLEESINAGVYTQQQALAYVTSKVKA------RKFTPFGSLPGTSVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKMKAIYLGLMTRRLIQTELGENGL---DDRDFYGNKRLELAGSLLSLLFEDVFKRFNSELKRIADNALMKTMAAPLDIVKHMRQDMITNTIVNAMSTGNWIIKRFRMERLGVTQVLSRLSYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTD--SDEKPVLRLLL-NSGVEDLHNV-HFSHVNKPENTLIFLNGVLIGTAVDPERVVKAVRDLRRSGLLSEFVSVSRSLTNRSVFISSDGGRLCRPYIIVKN-GTPMLTQAHVQELKEGKMIFEDFVDDGIVEYLDVNE-MNDALIAVYGREIGPETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTFDRLLGPALDPNTRKPIFKHKNLDQEGIVFAGARIMPKQTIINKHMPVVSGESGPGASASANTIGIAGRQVDYKDVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKAGVVNGTYHYGTAF--GGDQVK--DVCEELAACGYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLMVSSDEFKVDVCTGCGVIG-SKGWCQKCRSSKSMANIKIPYACKLLFQELQSMNIVPRLDLARY 1152

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Query:   73 MDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSS-KFFVQISNIKVDKPAIFE--YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQE------ICRRVLNHVPGSVGNLSYRAKYLGLMTRRIL---LAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDDLGTFRHQSGMN-----LIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERG-----LFKSV--TSKCFTDVIKDNEF---LAIPVRKDRRQHA-IDDDGTAAIGSVIRNGDIVISK---IVNPVKDPVVAATE-----ASKVMDPKPAPTCYSGSEPTIVVEKITTF-DGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRH 3456
            ++ K  LV  +     LV+ HL SF+HFV+ E+  I+ ++ ++   ++  F+++  +I++ KP+  E        + PQ+CR+R+ TY+A ++VDI+Y   GN+ +  +  +IGR+PIMLRS  C L  L+ EEL R  EC YD GGYF+ KG+E+V L+QEQ++KNR+++ +                   +++ C V S T   K+KT V    G + V+++   + +P+ ++F A+ + +  DI  +IG E +  +    ++EESI  G+++Q+QAL ++  ++K       +  T   S+     S+L   +E      +   ++ H+    GN   +A YLGLMTRR++   L ENGL   DDRDFYG KRLE+ G+ L+L+FED F+   S L+      +    A  LD  +++RQ +IT  +   + TGNW + RF M R GVTQVL+RLSY+  LG + RI+S FEK RK+SG R++  SQ G +C +DTPEGEACGLVKNLA +  IT +  ++E+  L + +  S  +DL    H S +N     LI +NGV IG    P  +  A+R+ RR+GL+   VSV       ++ + SDGGR+ RPYIIV N G   LT+A  QE+  G   ++D V  GI+EY+D  E   + L+A    ++  + THL+I+P T LGV A LIP+PHHNQSPRNTYQCAMGKQA+G IA NQ KR D   + L  PQRPL  S    LTN++ LPAG N I+A++ + GYDIEDA+V+NKASL+RG     ++K V  T+K + +   D      L    RK   +H  +D +G    G+ I     +I+K   +V+    P  +A+      A + +D K     Y    P+     + T+ +    + +V   Q R+PE+GDK SSRHGQKGV   +   +DMP+ + G+VPD+IMNPHG+PSRMTVGKL+ELL+ K+ V++G Y   +AF   G +V   D    + A G++  GK+++ SG  G  +   +Y GP++YQ+LKHMV DK+HAR  G    LTRQP  GRS +GGLR+GEMERDCLI YGAS +L ER+M+SSD F+  VC  CG++  SK WCQ CRSS+ ++++ +PYA KLL QEL ++ I PRL L+R+
Sbjct:   25 LEDKWLLVPAFLKVRGLVKQHLVSFDHFVQEEIRSIMLSNQKITSDANPNFYLKYLDIRIGKPSSEEGLNMTHDKITPQECRLRDMTYSAPISVDIEYTR-GNQRVFKKDLIIGRMPIMLRSSKCILRDLAEEELARVQECPYDPGGYFVVKGSEKVILIQEQLSKNRIMVGRNS----------------SKELQCEVLSSTSERKSKTYVTMKKGKYSVRHNQLTDDVPVSIIFKAMGVESDFDIVSTIGHEEKYVSAFAQTLEESINAGVYTQQQALAYVTSKVKA------RKFTPFGSLPGTSVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKMKAIYLGLMTRRLIQTELGENGL---DDRDFYGNKRLELAGSLLSLLFEDVFKRFNSELKRIADNALMKTMAAPLDIVKHMRQDMITNTIVNAMSTGNWIIKRFRMERLGVTQVLSRLSYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTD--SDEKPVLRLLL-NSGVEDLHNV-HFSHVNKPENTLIFLNGVLIGTAVDPERVVKAVRDLRRSGLLSEFVSVSRSLTNRSVFISSDGGRLCRPYIIVKN-GTPMLTQAHVQELKEGKMIFEDFVDDGIVEYLDVNE-MNDALIAVYGREIGPETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTFDRLLGPALDPNTRKPIFKHKNLDQEGIVFAGARIMPKQTIINKHMPVVSGESGPGASASANTIGIAGRQVDYKDVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKAGVVNGTYHYGTAF--GGDQVK--DVCEELAACGYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLMVSSDEFKVDVCTGCGVIG-SKGWCQKCRSSKSMANIKIPYACKLLFQELQSMNIVPRLDLARY 1152

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Celegans
Match: rpb-2 (DNA-directed RNA polymerase II subunit RPB2 [Source:UniProtKB/Swiss-Prot;Acc:Q10578])

HSP 1 Score: 630.943 bits (1626), Expect = 0.000e+0
Identity = 411/1186 (34.65%), Postives = 623/1186 (52.53%), Query Frame = 1

Query:   91 LVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPS------------SKFFVQISNIKVDKPAIFEYQ-IKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNE---------KFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSL----------FHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNW-HLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITV-NLPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQP-VXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQ----EILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEE----CQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTD--VIKDN---EFLAIPVRK--DRRQHA----IDDDGTAAIGSVIRNGDIVISKIVN-PVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTF--DGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGM-----LATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRHET 3462
            ++  Y +   LVR  LDSF+ FV++ + +IV+    V++ S            +KF ++ + I + KP  +E     +P+ P + R+RN TYA+ + VDI       K++  +         K  +G++P+MLRS  C L  +++ +LT  NEC  D GGYF+  G+E+V + QE+MA N + +   K  K              E   C   S    +     +    G    + ++            + IP+ ++F AL   + +DI   I  +     E++  V+ S++     Q Q          VA+N        P      E+ +  AR+ + + +L HV  S    + +A ++G M  R+LLA  G    DDRD  G KRL++ G  LA +F   F++L+  ++M   K IN N    LD    ++ S IT G+   + TGNW    +   +R+GV+QVLNRL+Y  TL HL R +S   +  K++  R +H +Q G VC A+TPEG+A GLVKNLA +  I+V +LP    E LE +   +  +   +    +    I VNG  +G   +P   M    + RR+  +I   VS+  + +   + + +D GR+ RP +IV N  ++   R + Q       A    W DLV  G++E ID++E     +    E        + HTH +I PA  LGV AS+IPFP HNQSPRNTYQ AMGKQA+GV  TN   R D   H L  PQ+PL  +       +  LPAG NAIVAIL + GY+ ED++++N ++++RGLF+SV  + + D     DN   E +  P R+     +H+    +D+DG  + G  +   D++I K V  P  D  + A+   K    + A T    SE  IV + + +   DG+ +  +++   +R P++GDK +SRHGQKG +  +   +DMP+T +GL PDII+NPH  PSRMT+G LIE L  K +   G   D++ F++    VN      ++  +G+ + G EVM +G  G  +   ++ GP +YQRLKHMV DK+H+R  G  Q + RQP  GR+ DGGLR GEMERDC I +GA+Q L+ER+   SDP+  +VC  CG+     L T+   C+ CR+   VS+V +PYA KLL QELM++ I PRL +   ++
Sbjct:   37 VISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGTDMENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDI------TKVVTRDDSATEKVYDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVFSMKDGKYA---------FKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFN-DPEMMEMVKPSLDEAFVIQEQ---------NVALNFIGARGAKPG--VTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKNDDFALDVC--VKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEE--VSPSAIADATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELIDSMEEETSMIAMMPEDLRSGGYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDAS--GKKYPKRDASTFLRSSETGIVDQVMLSLNSDGN-KFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDT---VNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRLMVKPRQS 1185

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Celegans
Match: rpoa-2 (DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q27493])

HSP 1 Score: 278.485 bits (711), Expect = 2.120e-77
Identity = 198/710 (27.89%), Postives = 316/710 (44.51%), Query Frame = 1

Query: 1471 KISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDDLGTFRHQS------GMNL--IMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYY----------------ETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKC-FTDVIKDNEFLAIPVRKDRRQ-HAIDDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSS--AFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLA-------------------------TSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRL 3441
            + +  R +     GF+C   TP+G  CGL+ ++     I  +L              S   +LG + H++      G  L  +++NG  +G  Y P+  AA++    R   +     + Y                +T+   +++ SD GR++RP             R +  + +  +  ++ +  S +++  +A  G                  H ++ P+       +LIPFP HNQSPRN YQC MGKQ +G        R D   +RL  PQ+P+              P G NA VA++ + GYD+EDA+ INKAS +RG       K    +++ + E   I  R  R +   +  DG    G         + ++     +         K    +PA   Y G    + + +    D   +   ++    R P +GDK +SRHGQKG+ S +  ++ +P++E G+VPDII NPHGFPSRMT+G +IE +A K+A   G   D+S   F+E    +N   +  ++   G++  G E   SG +G  ME  ++ G V+YQRL+HM+ DK   R  G    +T QP  GR   GG+R GEMERD +I +G S +L++R++  SD   A+ C +CG L                          T  + C+ C     V  + +P   + L  EL  + +  +L
Sbjct:  456 RTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVP-------SLLAELGMYTHKTVALAPPGEELYPVLMNGRFLG--YVPITKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRP------------VRNLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVT---------------MHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLVTERERKTIFYRNPREEIKTVGPDGLPIPGR-----RYFLDEVYYVTFNMETGDFRTHKFHYAEPA---YCG---LVRIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFVFNEDNTAINH--FGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKL 1116

HSP 2 Score: 72.0182 bits (175), Expect = 2.291e-12
Identity = 46/151 (30.46%), Postives = 77/151 (50.99%), Query Frame = 1

Query:  118 SLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSKF--------FVQISNIKVDKPAIFE----YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERV 534
             +  +H+DSF+  V        +      +P+ KF         ++ ++ ++ KP +          +PL P +CR R  TYA ++ V I     G++L   E  ++G++PIMLRS+ C+L G+S +EL    E   + GGYFI  G+E+V
Sbjct:    4 DIASYHVDSFDFLVSKGCQFAAQA-----VPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIE-IILGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKV 148

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Fly
Match: RpIII128 (gene:FBgn0004463 transcript:FBtr0087977)

HSP 1 Score: 833.943 bits (2153), Expect = 0.000e+0
Identity = 466/1151 (40.49%), Postives = 687/1151 (59.69%), Query Frame = 1

Query:   73 MDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSK-FFVQISNIKVDKPAIFE-YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDDLGTFRHQSG-------MNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVH-QEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSV---TSKCFTDVIKDNEFLAI--PVRKDR------RQHAIDDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPA-PTCYSGSEPTIVVEKITTFDGHYR-MERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRH 3456
            +  K  LV  +     LV+ H+DSFNHF+ V++ KIVK +  V   +   F+++  +++V KP I + + I     P +CR+R+ TY+A +TVDI+Y   G + IK    +IGR+P+MLR   C L G S  EL++ NEC  D GGYF+ +G E+V L+QEQ++ N+M+ E F      G+            + C VTS T   K++T V    G +Y++++   + IP+ V+F AL + + ++I   IG++S+  N    S+ ++  L +F+Q++AL ++  ++ V    ++  T +P+           AR+ +   +L HVP    NL  +A Y+ +M RR++ AE      DDRD+YG KRLE+ G+ L++MFED F+ +   L+    K I   KA Q D  +++R + IT G+   I +GNW + RF M R+GVTQVL+RLSY+  LG + R++SQFEK RK+SG R++  SQ G +C +DTPEGEACGLVKNLA +  IT     E +E+  M +  +++  +   R  SG       + L+ +NG  +G T     +   LR  RR G +  +VSV+       +++ +DGGR+ RPY+IV N     L +  H  E+  G+R +DD +  G+IEY+D  E   +  +A+ E Q+ ++ THL+I+P T LGV A L+P+PHHNQSPRNTYQCAMGKQA+G+I  NQ  R D   + LV P  P+  S    LTN+  LPAGQNA VA++ + GYDIEDA+++NKAS++RG  + +    SKC      +  F  I  P++         +   +D DG  A G  ++N  I+I+K +  V        ++++V  P  A P  Y G EP+ +   + + +     + ++   Q R PE+GDK SSRHGQKGV   +V  +DMP+ + G+ PD+IMNPHGFPSRMTVGK +ELL  K+ +++G +   +AF   G KV   D Q+ +  HGF+  GK+   SG  G  +E  +Y+GPV+YQ+LKHMVQDK+HAR  G    LTRQP  GRS +GGLR+GEMERDCLI YGAS ++ ER+M+SSD F   VC  CG +A    WC  C+SS +VS + MPYA KLL QEL ++ + P++ L  +
Sbjct:   31 LTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVTSGADPLFYLKYLDVRVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYTR-GTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWNKMLTEDFN-----GV------------VQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSMTDDIPIVVIFKALGVVSDQEIQSLIGIDSKSQNRFGASLIDAYNLKVFTQQRALEYMGSKL-VVKRFQSATTKTPSEE---------ARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMRAAQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHIT----TEVEERPVMIV--AFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENR--RPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDVNEE-NDSFIAWNEDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQV--PYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAF--GGSKVE--DIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAYC-SWCHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMILENY 1137

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Fly
Match: RpII140 (gene:FBgn0262955 transcript:FBtr0082892)

HSP 1 Score: 641.728 bits (1654), Expect = 0.000e+0
Identity = 423/1184 (35.73%), Postives = 626/1184 (52.87%), Query Frame = 1

Query:   91 LVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVK-------------THGRVDIPSSKFFVQISNIKVDKPAIFEYQ-IKIPLYPQQCRVRNFTYAADVTVDI----QYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITK---KGGIKVPLSEKI-PDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNW-HLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVN---------LPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXX-XXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRD-----WDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQ--------HTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTD-----VIKDNEFLAIPVR------KDRRQHAIDDDGTAAIGSVIRNGDIVISKIVN-PVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGH-YRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEW-----CQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLS 3450
            ++  Y +   LVR  LDSF+ F+++ + +IV+             T G V+ P  +F ++   I + KP  +E      P+ P + R+RN TY+A + VDI       G      +++K  IG+IPIMLRS  C L  L++ +LT  NEC  D GGYFI  G+E+V + QE+MA N + +   K  K   K  I+  L     P   +  ++ +    N  K+ + +             + IP+ ++F AL   A +DI E I  + +   E++  V+ S++     Q Q          VA+N        P     +++ +  A++ + + +L HV  S    + +A +LG M  R+LLA  G    DDRD YG KRL++ G  LA +F   F++LM  ++M   K I+  K   L+    I+ ++IT+G+   + TGNW    +   AR+GV+QVLNRL++  TL HL R++S   +  K++  R +H +  G +C A+TPEG A GLVKNLA +  I+V          L     E LE     + +D    F          VNG  +G    P  + A LR+ RR+  +I   VS+  + +   + + +D GR+ RP +IV NG  S L +  H E+L   RD     W  LV SG++EYID LE     ++A     L +         +TH +I PA  LGV AS+IPFP HNQSPRNTYQ AMGKQA+GV  TN   R D   H L  P +PL  +       ++ LPAG N+IVAILC+ GY+ ED++++N +++ERG F+SV  + + D     V    E    P R      ++     +DDDG  A G  +   D+VI K +  P  D  + +   +K    + A T    SE  IV + + T +   Y+  +++   +R P++GDK +SRHGQKG        +DM +T +GL PDII+NPH  PSRMT+G LIE L  K     G   D++ F++A   VN     + ++ +G+ + G EVM +G  G  +   V+ GP +YQRLKHMV DK+H+R  G  Q L RQP  GR+ DGGLR GEMERDC I +GA+Q L+ER+   SDP+R  +C  CG++A +        C+ C++   +S V +PYA KLL QELM++ I PRL ++
Sbjct:   30 VINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPP-RFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQR---IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD-DPEMMEMVKPSLDEAFVVQEQ---------NVALNFIGARGARPG--VTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELA--IKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIF----------VNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENG--SLLLKKTHVEMLKE-RDYNNYSWQVLVASGVVEYIDTLEE-ETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSN--TKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDA---VNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVT 1176

[Close]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Fly
Match: RpII140 (gene:FBgn0262955 transcript:FBtr0344600)

HSP 1 Score: 641.728 bits (1654), Expect = 0.000e+0
Identity = 423/1184 (35.73%), Postives = 626/1184 (52.87%), Query Frame = 1

Query:   91 LVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVK-------------THGRVDIPSSKFFVQISNIKVDKPAIFEYQ-IKIPLYPQQCRVRNFTYAADVTVDI----QYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITK---KGGIKVPLSEKI-PDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNW-HLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVN---------LPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXX-XXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRD-----WDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQ--------HTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTD-----VIKDNEFLAIPVR------KDRRQHAIDDDGTAAIGSVIRNGDIVISKIVN-PVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGH-YRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEW-----CQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLS 3450
            ++  Y +   LVR  LDSF+ F+++ + +IV+             T G V+ P  +F ++   I + KP  +E      P+ P + R+RN TY+A + VDI       G      +++K  IG+IPIMLRS  C L  L++ +LT  NEC  D GGYFI  G+E+V + QE+MA N + +   K  K   K  I+  L     P   +  ++ +    N  K+ + +             + IP+ ++F AL   A +DI E I  + +   E++  V+ S++     Q Q          VA+N        P     +++ +  A++ + + +L HV  S    + +A +LG M  R+LLA  G    DDRD YG KRL++ G  LA +F   F++LM  ++M   K I+  K   L+    I+ ++IT+G+   + TGNW    +   AR+GV+QVLNRL++  TL HL R++S   +  K++  R +H +  G +C A+TPEG A GLVKNLA +  I+V          L     E LE     + +D    F          VNG  +G    P  + A LR+ RR+  +I   VS+  + +   + + +D GR+ RP +IV NG  S L +  H E+L   RD     W  LV SG++EYID LE     ++A     L +         +TH +I PA  LGV AS+IPFP HNQSPRNTYQ AMGKQA+GV  TN   R D   H L  P +PL  +       ++ LPAG N+IVAILC+ GY+ ED++++N +++ERG F+SV  + + D     V    E    P R      ++     +DDDG  A G  +   D+VI K +  P  D  + +   +K    + A T    SE  IV + + T +   Y+  +++   +R P++GDK +SRHGQKG        +DM +T +GL PDII+NPH  PSRMT+G LIE L  K     G   D++ F++A   VN     + ++ +G+ + G EVM +G  G  +   V+ GP +YQRLKHMV DK+H+R  G  Q L RQP  GR+ DGGLR GEMERDC I +GA+Q L+ER+   SDP+R  +C  CG++A +        C+ C++   +S V +PYA KLL QELM++ I PRL ++
Sbjct:   30 VINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPP-RFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQR---IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD-DPEMMEMVKPSLDEAFVVQEQ---------NVALNFIGARGARPG--VTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELA--IKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIF----------VNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENG--SLLLKKTHVEMLKE-RDYNNYSWQVLVASGVVEYIDTLEE-ETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSN--TKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDA---VNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVT 1176

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Fly
Match: RpI135 (gene:FBgn0003278 transcript:FBtr0078054)

HSP 1 Score: 295.819 bits (756), Expect = 2.921e-83
Identity = 223/732 (30.46%), Postives = 346/732 (47.27%), Query Frame = 1

Query: 1372 MARSGV---TQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSD----DLGTFRHQ-SGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYET---------KMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEG-YAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMS-HVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGL-FKSVTSKCFTDVIKDNEFLAIPVRKDRRQHAIDDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIV--VEKITTFD-GHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGM----------------LATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLS 3450
            M  SG+    + +NR+ Y+     + R  S F  +R  + AR +     GF+C   TP+G  CGL+ +    + +T  +      +L   I +   D     L   R+    + ++ ++G  +G  +Q  + A  + +  R G I   +    E          +   L++ +   RM+RP                          W+  ++   +EYI  LE  Y E  +  +E    +  THL++     +  +A+LIP P +NQSPRN YQC MGKQ +G    N  K+     +RL  P  PL    H   +    F   G NAIVA++ + GYD+EDA++INKA+ ERG  + S+    F  + K + + A           +D DG    GS +  G  +         D  VA  +  K MD K         E  IV  + ++ +FD    +M  +     R   +GDK +SR GQKG+ S+    +D+P+TE GL+PDI+ NPHGFPSRMT+  +IE +A K A + GN  D++ F  +        +  ++ A G++  G E + SG +G  M  D++ G V YQRL+HMV DK   R  G  +  T QP  GR   GG+R GEMERD LI +GA+ +L++R+  +SD     VC KCG                 L++  + C++C  +  VS + +P++ K L+ EL ++ I  R  L+
Sbjct:  448 MQNSGLVIMAENINRMRYMSHFRAIHR-GSYFTTMR-TTEARQLLPDAWGFICPVHTPDGTPCGLLNH----LTLTCEISMRPDPKLVKAIPKHLIDMGMMPLSNRRYLGEKLYVVFLDGKHLGHIHQ--SEAEKIVDELRYGKIFGTLPQMMEIGFIPFKKNGQFPGLYIATGPARMMRPV-------------------------WN--LKWKRVEYIGTLEQLYMEIAIDAKE-MYPDFTTHLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDF-AMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKKSSYFARHPHMPELIKHLDTDGLPHPGSKLSYGSPLYCYF-----DGEVATYKVVK-MDEK---------EDCIVESIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSEENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSILAPLQRIVKRNETGGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINARFKLN 1127

HSP 2 Score: 56.6102 bits (135), Expect = 1.577e-7
Identity = 47/177 (26.55%), Postives = 81/177 (45.76%), Query Frame = 1

Query:   97 KLYNNSHSLVRHHLDSFNHFVEVEMGKIVK---THGRVDIPSSKFFVQISNIKVDKPAIFEYQIKI---PLYPQQCRVRNFTYAADVTVDIQYPGPG-NKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGG 606
            KL  +  +L   H+DSF+  + V +    K    +  +     K  +++ +I + KP + +  I +    +YP   R  + +Y+   +V + +   G  K   N    +G +PIMLRSK CNL   + EE+ +  E   + GG F+ +G E++  M     +N  I  K    K  G
Sbjct:   27 KLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPIN--MDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRG 201

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Zebrafish
Match: polr3b (polymerase (RNA) III (DNA directed) polypeptide B [Source:ZFIN;Acc:ZDB-GENE-030131-2887])

HSP 1 Score: 835.099 bits (2156), Expect = 0.000e+0
Identity = 471/1147 (41.06%), Postives = 684/1147 (59.63%), Query Frame = 1

Query:   73 MDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSK-FFVQISNIKVDKPAIFE-YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAK--YLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDD---LGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSV---TSKCFTDVIKDNEF-------LAIPVRKDRRQHAI-DDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYR-MERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRH 3456
            ++ K  L+  +     LV+ H+DSFN+F+ VE+ KI+K + ++   +   ++++  NI V  P + E + +  P+ P +CR+R+ TY+A +TVDI+Y     ++I+N    IGR+PIMLRS  C L G +  E ++ NEC  D GGYFI KG E+V L+QEQ++KNR+I+++    +KG +                VTS T   K++T +    G FY++++   E  P+ ++F A+ + + ++I + IG E  +      S+EE  +  IF+Q QAL ++  +++       +M   P   + EE     AR+ +   +L HVP  V   ++RAK  YL +M RR++LA+ G    DDRD+YG KRLE+ G  L+L+FED F+   S L+    + I   +A Q D  +++RQ  IT GM   I TGNW L RF M R GVTQVL+RLS++  LG + RISSQFEK RK+SG R++  SQ G +C +DTPEGEACGLVKNLA +  IT ++  E+   +++       D     G       + L+ +NG  +G       +    R  RRAG I+  VS+        +++ SDGGR+ RPYIIV NG  +   + + +E+  G R ++D +   ++EY+D  E   +C +A  E  +++  THL+I+P T LGV A LIP+PHHNQSPRNTYQCAMGKQA+G I  NQ  R D   + L  PQRP+  +    L +++ LPAGQNA VA++ + GYDIEDA+V+NKASL+RG  + +    +KC      +  F       L    RK   +H+I D DG  + G  + N  ++++K +  V    +  +        +  P  Y G+  + + + + + +     + ++   Q R+PE+GDK SSRHGQKGV   +V  +DMP+ + G+ PDIIMNPHG+PSRMTVGKLIELLA K+ V+DG +   +AF   G KV   D    +  +G++  GK+ + SG  G  +E  +Y GPV+YQ+LKHMV DK+HAR  G    LTRQP  GRS DGGLR+GEMERDCLIGYGAS +L ER+M+SSD F   VC +CG+L  S  WC  C+SS HVSS+ +PYA KLL QEL ++ I PRL L+R+
Sbjct:   21 VEEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRN-ALPIGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVDQ---DRKGTVGA-------------SVTSSTHEKKSRTNMIVKQGRFYLKHNTLSEDAPIAIIFKAMGVESDQEIVQMIGTEEHVMAAFAPSLEECQKAQIFTQTQALRYIGNKVR-----RQRMWGGPKKTKMEE-----ARELLASTILTHVP--VKEFNFRAKCIYLAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDM--EDGPIIKLAFNLGVEDVNLLCGEELSYPTVFLVFLNGNILGVIRDHQKLVYTFRLMRRAGFINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKNGKPAVKNKHI-EELSQGYRTFEDFLHESLVEYLDVNEE-NDCNIALYEHMISKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMGPMLDAETRKPIWRHSILDADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSAQPGQPQYREVPVSYKGATDSYIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAF--GGSKVK--DVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSG-WCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLARY 1128

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Query:   73 MDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSK-FFVQISNIKVDKPAIFE-YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAK--YLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDD---LGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSV---TSKCFTDVIKDNEF-------LAIPVRKDRRQHAI-DDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYR-MERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRH 3456
            ++ K  L+  +     LV+ H+DSFN+F+ VE+ KI+K + ++   +   ++++  NI V  P + E + +  P+ P +CR+R+ TY+A +TVDI+Y     ++I+N    IGR+PIMLRS  C L G +  E ++ NEC  D GGYFI KG E+V L+QEQ++KNR+I+++    +KG +                VTS T   K++T +    G FY++++   E  P+ ++F A+ + + ++I + IG E  +      S+EE  +  IF+Q QAL ++  +++       +M   P   + EE     AR+ +   +L HVP  V   ++RAK  YL +M RR++LA+ G    DDRD+YG KRLE+ G  L+L+FED F+   S L+    + I   +A Q D  +++RQ  IT GM   I TGNW L RF M R GVTQVL+RLS++  LG + RISSQFEK RK+SG R++  SQ G +C +DTPEGEACGLVKNLA +  IT ++  E+   +++       D     G       + L+ +NG  +G       +    R  RRAG I+  VS+        +++ SDGGR+ RPYIIV NG  +   + + +E+  G R ++D +   ++EY+D  E   +C +A  E  +++  THL+I+P T LGV A LIP+PHHNQSPRNTYQCAMGKQA+G I  NQ  R D   + L  PQRP+  +    L +++ LPAGQNA VA++ + GYDIEDA+V+NKASL+RG  + +    +KC      +  F       L    RK   +H+I D DG  + G  + N  ++++K +  V    +  +        +  P  Y G+  + + + + + +     + ++   Q R+PE+GDK SSRHGQKGV   +V  +DMP+ + G+ PDIIMNPHG+PSRMTVGKLIELLA K+ V+DG +   +AF   G KV   D    +  +G++  GK+ + SG  G  +E  +Y GPV+YQ+LKHMV DK+HAR  G    LTRQP  GRS DGGLR+GEMERDCLIGYGAS +L ER+M+SSD F   VC +CG+L  S  WC  C+SS HVSS+ +PYA KLL QEL ++ I PRL L+R+
Sbjct:   21 VEEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRN-ALPIGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVDQ---DRKGTVGA-------------SVTSSTHEKKSRTNMIVKQGRFYLKHNTLSEDAPIAIIFKAMGVESDQEIVQMIGTEEHVMAAFAPSLEECQKAQIFTQTQALRYIGNKVR-----RQRMWGGPKKTKMEE-----ARELLASTILTHVP--VKEFNFRAKCIYLAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDM--EDGPIIKLAFNLGVEDVNLLCGEELSYPTVFLVFLNGNILGVIRDHQKLVYTFRLMRRAGFINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKNGKPAVKNKHI-EELSQGYRTFEDFLHESLVEYLDVNEE-NDCNIALYEHMISKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMGPMLDAETRKPIWRHSILDADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSAQPGQPQYREVPVSYKGATDSYIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAF--GGSKVK--DVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSG-WCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLARY 1128

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Zebrafish
Match: polr2b (polymerase (RNA) II (DNA directed) polypeptide B [Source:ZFIN;Acc:ZDB-GENE-041008-1])

HSP 1 Score: 633.254 bits (1632), Expect = 0.000e+0
Identity = 418/1182 (35.36%), Postives = 629/1182 (53.21%), Query Frame = 1

Query:   91 LVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVK-------------THGRVDIPSSKFFVQISNIKVDKPAIFEYQ-IKIPLYPQQCRVRNFTYAADVTVDIQYP----GPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITK---KGGIKVPL-SEKIPDEDIVCHVTSYTIVNKTKTTVFRN--SGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNW-HLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVN---------LPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXX-XXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQ--EILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQ-------HTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDV-----IKDNEFLAIPVRKDRR--QHAI----DDDGTAAIGSVIRNGDIVISKIVN-PVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGH-YRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLA-----TSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLS 3450
            ++  Y +   LVR  LDSF+ F+++ + +IV+             T G V+ P  ++ ++   I + KP  +E      P+ P + R+RN TY+A + VDI       G   +  +++K  IG+IPIMLRS  C L GL++ +L   NEC  D GGYFI  G+E+V + QE+MA N + +   K +K    G  +  L +   P   I   + +       K+ + +   S   Y++     + +P+ ++F AL   + +DI E I  + +   E++  V+ S++     Q Q          VA+N        P     +ER +  A++ + + VL HV  S    + +A +LG M  R+LLA  G    DDRD YG KRL++ G  LA +F   F++L+  +++   K I+  K   L+    I+  +I++G+   + TGNW  + +   AR+GV+QVLNRL++  TL HL R++S   +  K++  R +H +  G VC A+TPEG A GLVKNLA +  I+V          L     E LE     + +D    F          VNG  +G    P  +   LR+ RR+  +I   VS+  + +   + + +D GR+ RP +IV    +    R + Q  E       W DLV SG++EYID LE     ++A     L E+       +TH +I P+  LGV AS+IPFP HNQSPRNTYQ AMGKQA+GV  TN   R D   H L  PQ+PL  +       ++ LPAG N+IVAI  + GY+ ED++++N+++++RG F+SV  + + +          E    P R+  +  +HAI    DDDG  A G  +   D++I K V  P  D  + +T  ++    +   T    SE  IV + + T +   Y+  +++   +R P++GDK +SRHGQKG        +DMP+T +G+ PDII+NPH  PSRMTVG LIE L  K +   G   D++ F++A   VN     +++  +G+ + G EV+ +G  G  +   ++ GP +YQRLKHMV DK+H+R  G  Q L RQP  GRS DGGLR GEMERDC I +GA+Q LKER+  +SDP++  VC  CG++A     T    C+ CR+   +S V MPYA KLL QELM++ I PR+  S
Sbjct:   29 VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEEPP-RYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTLPYIR-----QEVPIIIVFRALGFVSDRDILEHIIYDFD-DPEMMEMVKPSLDEAFVIQEQ---------NVALNFIGSRGAKPG--VTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNLELA--IKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIF----------VNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEE-ETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDST--NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDA---VNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS 1174

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Zebrafish
Match: polr1b (RNA polymerase I subunit B [Source:ZFIN;Acc:ZDB-GENE-040426-1598])

HSP 1 Score: 320.087 bits (819), Expect = 1.811e-91
Identity = 226/696 (32.47%), Postives = 335/696 (48.13%), Query Frame = 1

Query: 1450 SQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNL-PAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKM----------ETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKC----FTDVIKDNEFLAIPVR--KDRRQHAIDDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATS---------------KEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRL 3441
            + F K+R  +  R +     GF+C   TP+GE CGL+ ++    EI   + P      L   +  + +D     +  S    ++++G  IGW  + VA +     RR   L    V  + E  +            L++ +   RMVR    V N  + K      QE++            GI E +    G       FE+       TH ++ P + L VVA  IPF  HNQSPRN YQC M KQ +G    +   R D   +RL  PQ PL    +    +    P G NAIVA++ + GYD+EDA+++NK+S ERG       K      ++ +K ++ +   V+    +    +D DG   IGSV++ GD        P    +   T  S V   K   +C   +   I V    T  G ++   V +   R P +GDK +SRHGQKG++SR+   +DMP+TE G+ PDI+ NPHGFPSRMT+G LIE +A KSA + G   D++ F+ +        +  +++A G++  G E + SG +G  +E D++ G V+YQRL+HMV DK   R  G   ++T QP  GR+  GG+R GEMERD L+ +G S +L +R+   SD   A VC  CG L +                K  C +C  S  + +V +PY  K  + EL  + I  +L
Sbjct:  474 AAFAKMRTTT-VRKLLPESWGFLCPVHTPDGEPCGLMNHMTAHCEIVAPVYPTSTLPGLLCSLGVNAADG-NPGQAYSDCYPVILDGAMIGWVEKEVAPSVIESLRRFKVLGEKKVPPWTEIVLVPQTGKASLYPGLYLFTTPCRMVR---TVRNLSLGK------QELI------------GIFEQVYLNVG------IFEKEIEDGVTTHQELFPHSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQYRSDNKLYRLQTPQSPLVRPAMYDHYDVDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEIIDLSEKVKGDDSIVFGVKPGDPKVMGKLDADGLPFIGSVLKYGD--------PFYGYISLNTGQSHVYFYKYQESCVVDN---IKVCSNETGTGRFKRICVTSRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMSPDILFNPHGFPSRMTIGMLIESMAGKSASLHGLCHDATPFTFSEENSALEHFGELLKAAGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPMGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCMDCGSLLSPLLEKPPPNWSATRHRKTICLLCNKSDSIETVSVPYVFKYFVAELAAMNIKIKL 1129

HSP 2 Score: 67.781 bits (164), Expect = 7.271e-11
Identity = 55/189 (29.10%), Postives = 95/189 (50.26%), Query Frame = 1

Query:  121 LVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSKFFVQISNIK-------VDKPAIFEYQIK--IPLYPQQCRVRNFTYAADVTVDIQYP--GPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMII---EKFKITKKGGIKVPLSEKIPDED 645
            LV+ H++SF+  V   + ++V+      IP  +F  +   I        +  P++ +  I   + ++P +CR R  TY A +  D+ +   G    +IK     +G++PIM++SK+CNL+GLS +EL   +E   + GGYFI  G E+V  +     +N  I     KFK   +G  +  +S +   E+
Sbjct:   37 LVKAHIESFDQAVTDGLCRVVEA-----IPPMEFLYKGDRISLSFVEAIIHTPSVSKGGISRDLRVFPAECRGRRCTYRAKLVADVSWSVNGVPKGIIKQS---LGQMPIMVKSKLCNLHGLSPKELLEHHEEAEEMGGYFIVNGIEKVIRLLIMPRRNYPIAVSRPKFKSRGQGYTQYAISMRCVKEE 217

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Query: 1450 SQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNL-PAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKM----------ETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKC----FTDVIKDNEFLAIPVR--KDRRQHAIDDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATS---------------KEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRL 3441
            + F K+R  +  R +     GF+C   TP+GE CGL+ ++    EI   + P      L   +  + +D     +  S    ++++G  IGW  + VA +     RR   L    V  + E  +            L++ +   RMVR    V N  + K      QE++            GI E +    G       FE+       TH ++ P + L VVA  IPF  HNQSPRN YQC M KQ +G    +   R D   +RL  PQ PL    +    +    P G NAIVA++ + GYD+EDA+++NK+S ERG       K      ++ +K ++ +   V+    +    +D DG   IGSV++ GD        P    +   T  S V   K   +C   +   I V    T  G ++   V +   R P +GDK +SRHGQKG++SR+   +DMP+TE G+ PDI+ NPHGFPSRMT+G LIE +A KSA + G   D++ F+ +        +  +++A G++  G E + SG +G  +E D++ G V+YQRL+HMV DK   R  G   ++T QP  GR+  GG+R GEMERD L+ +G S +L +R+   SD   A VC  CG L +                K  C +C  S  + +V +PY  K  + EL  + I  +L
Sbjct:  474 AAFAKMRTTT-VRKLLPESWGFLCPVHTPDGEPCGLMNHMTAHCEIVAPVYPTSTLPGLLCSLGVNAADG-NPGQAYSDCYPVILDGAMIGWVEKEVAPSVIESLRRFKVLGEKKVPPWTEIVLVPQTGKASLYPGLYLFTTPCRMVR---TVRNLSLGK------QELI------------GIFEQVYLNVG------IFEKEIEDGVTTHQELFPHSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQYRSDNKLYRLQTPQSPLVRPAMYDHYDVDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEIIDLSEKVKGDDSIVFGVKPGDPKVMGKLDADGLPFIGSVLKYGD--------PFYGYISLNTGQSHVYFYKYQESCVVDN---IKVCSNETGTGRFKRICVTSRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMSPDILFNPHGFPSRMTIGMLIESMAGKSASLHGLCHDATPFTFSEENSALEHFGELLKAAGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPMGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCMDCGSLLSPLLEKPPPNWSATRHRKTICLLCNKSDSIETVSVPYVFKYFVAELAAMNIKIKL 1129

HSP 2 Score: 67.781 bits (164), Expect = 7.271e-11
Identity = 55/189 (29.10%), Postives = 95/189 (50.26%), Query Frame = 1

Query:  121 LVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSKFFVQISNIK-------VDKPAIFEYQIK--IPLYPQQCRVRNFTYAADVTVDIQYP--GPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMII---EKFKITKKGGIKVPLSEKIPDED 645
            LV+ H++SF+  V   + ++V+      IP  +F  +   I        +  P++ +  I   + ++P +CR R  TY A +  D+ +   G    +IK     +G++PIM++SK+CNL+GLS +EL   +E   + GGYFI  G E+V  +     +N  I     KFK   +G  +  +S +   E+
Sbjct:   37 LVKAHIESFDQAVTDGLCRVVEA-----IPPMEFLYKGDRISLSFVEAIIHTPSVSKGGISRDLRVFPAECRGRRCTYRAKLVADVSWSVNGVPKGIIKQS---LGQMPIMVKSKLCNLHGLSPKELLEHHEEAEEMGGYFIVNGIEKVIRLLIMPRRNYPIAVSRPKFKSRGQGYTQYAISMRCVKEE 217

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Xenopus
Match: polr3b (polymerase (RNA) III (DNA directed) polypeptide B [Source:NCBI gene;Acc:100158643])

HSP 1 Score: 832.402 bits (2149), Expect = 0.000e+0
Identity = 474/1144 (41.43%), Postives = 675/1144 (59.00%), Query Frame = 1

Query:   82 KHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSK-FFVQISNIKVDKPAIFE-YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAK--YLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDD---LGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSV---TSKCFTDVIKDNEF-------LAIPVRKDRRQHAI-DDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGH-YRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRH 3456
            K  L+  +     LV+ H+DSFN+F+  E+ KI+K + +V   +   ++++  NI V  P + E + +  P+ P +CR+R+ TY+A +TVDI+Y     ++I+N    IGR+PIMLRS  C L G +  E  + NEC  D GGYFI KG E+V L+QEQ++KNR+I+E     +KG +                VTS T   K++T +    G FY++++   E IP+ ++F A+ + + ++I + IG E  +      S+EE  +  IF+Q QAL ++  +++       +M  S    + +      AR+ +   +L HVP  V    +R K  Y+ +M RR++LA+ G    DDRD+YG KRLE+ G  L+L+FED F+   S ++    + I   +A Q D  +++RQ  IT GM   I +GNW L RF M R GVTQVL+RLSY+  LG + RISSQFEK RK+SG R++  SQ G +C +DTPEGEACGLVKNLA +  IT ++  E+   +++       D     G     + + L+ +NG  +G       +    R  RRAG I+  VS+        +++ SDGGR+ RPYIIV N   S +T    QE+  G R ++D +   ++EY+D  E   +C VA  E  +T+  THL+I+P T LGV A LIP+PHHNQSPRNTYQCAMGKQA+G I  NQ  R D   + L  PQRP+  +    L  ++ LPAGQNA VA++ + GYDIEDA+V+NKASL+RG  + +    +KC      +  F       L    RK   +H I D DG  + G  + N  ++++K +  V    +  +   +    K  P  Y G   + + + + + +     + ++   Q R+PE+GDK SSRHGQKGV   +V  +DMP+ E G+ PDIIMNPHG+PSRMTVGKLIELLA K+ V+DG +   +AF   G KV   D    +  +G++  GK+ + SG  G  +E  +Y GPV+YQ+LKHMV DK+HAR  G    LTRQP  GRS DGGLR+GEMERDCLIGYGAS +L ER+M+SSD F   VC KCG+L  S  WC  C+SS HVSS+ +PYA KLL QEL ++ I PRL L+++
Sbjct:   26 KWKLLPAFLKVKGLVKQHIDSFNYFINDEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRN-ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEA---DRKGTVGA-------------SVTSSTHEKKSRTNLVVKQGRFYLKHNTLTEDIPIAIIFKAMGVESDQEIVQMIGTEEHVIAAFAPSLEECQKAQIFTQMQALKFIGNKVR-----RQRMWGSSGPKKSKIDE---ARELLASTILTHVP--VKEFHFRTKCIYIAVMVRRVILAQ-GANKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISSGNWSLKRFKMDRQGVTQVLSRLSYIAALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDM--EDGPIIKLAANLGVEDVNLLCGEELSYANVFLVFLNGNILGVIRDHQKLVNTFRLMRRAGYINEFVSISTNISDRCVYISSDGGRLCRPYIIVKNQR-SAVTNKHIQELSQGYRSFEDFLHESLVEYLDVNEE-NDCNVALYEHTITKHTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYSNQTFDKVMGPMLDANTRKQIWRHEILDADGICSPGEKVENKQVLVNKYMPTVTQTPLEGSSVPQQPQYKDVPITYKGPTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCETGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAF--GGSKVK--DVCEDLIRYGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGKCGLLGYSG-WCHFCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLAKY 1132

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Xenopus
Match: polr3b (polymerase (RNA) III (DNA directed) polypeptide B [Source:NCBI gene;Acc:100158643])

HSP 1 Score: 830.861 bits (2145), Expect = 0.000e+0
Identity = 472/1131 (41.73%), Postives = 671/1131 (59.33%), Query Frame = 1

Query:  121 LVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSK-FFVQISNIKVDKPAIFE-YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAK--YLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDD---LGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSV---TSKCFTDVIKDNEF-------LAIPVRKDRRQHAI-DDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGH-YRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRH 3456
            LV+ H+DSFN+F+  E+ KI+K + +V   +   ++++  NI V  P + E + +  P+ P +CR+R+ TY+A +TVDI+Y     ++I+N    IGR+PIMLRS  C L G +  E  + NEC  D GGYFI KG E+V L+QEQ++KNR+I+E     +KG +                VTS T   K++T +    G FY++++   E IP+ ++F A+ + + ++I + IG E  +      S+EE  +  IF+Q QAL ++  +++       +M  S    + +      AR+ +   +L HVP  V    +R K  Y+ +M RR++LA+ G    DDRD+YG KRLE+ G  L+L+FED F+   S ++    + I   +A Q D  +++RQ  IT GM   I +GNW L RF M R GVTQVL+RLSY+  LG + RISSQFEK RK+SG R++  SQ G +C +DTPEGEACGLVKNLA +  IT ++  E+   +++       D     G     + + L+ +NG  +G       +    R  RRAG I+  VS+        +++ SDGGR+ RPYIIV N   S +T    QE+  G R ++D +   ++EY+D  E   +C VA  E  +T+  THL+I+P T LGV A LIP+PHHNQSPRNTYQCAMGKQA+G I  NQ  R D   + L  PQRP+  +    L  ++ LPAGQNA VA++ + GYDIEDA+V+NKASL+RG  + +    +KC      +  F       L    RK   +H I D DG  + G  + N  ++++K +  V    +  +   +    K  P  Y G   + + + + + +     + ++   Q R+PE+GDK SSRHGQKGV   +V  +DMP+ E G+ PDIIMNPHG+PSRMTVGKLIELLA K+ V+DG +   +AF   G KV   D    +  +G++  GK+ + SG  G  +E  +Y GPV+YQ+LKHMV DK+HAR  G    LTRQP  GRS DGGLR+GEMERDCLIGYGAS +L ER+M+SSD F   VC KCG+L  S  WC  C+SS HVSS+ +PYA KLL QEL ++ I PRL L+++
Sbjct:   43 LVKQHIDSFNYFINDEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRN-ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEA---DRKGTVGA-------------SVTSSTHEKKSRTNLVVKQGRFYLKHNTLTEDIPIAIIFKAMGVESDQEIVQMIGTEEHVIAAFAPSLEECQKAQIFTQMQALKFIGNKVR-----RQRMWGSSGPKKSKIDE---ARELLASTILTHVP--VKEFHFRTKCIYIAVMVRRVILAQ-GANKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISSGNWSLKRFKMDRQGVTQVLSRLSYIAALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDM--EDGPIIKLAANLGVEDVNLLCGEELSYANVFLVFLNGNILGVIRDHQKLVNTFRLMRRAGYINEFVSISTNISDRCVYISSDGGRLCRPYIIVKNQR-SAVTNKHIQELSQGYRSFEDFLHESLVEYLDVNEE-NDCNVALYEHTITKHTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYSNQTFDKVMGPMLDANTRKQIWRHEILDADGICSPGEKVENKQVLVNKYMPTVTQTPLEGSSVPQQPQYKDVPITYKGPTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCETGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAF--GGSKVK--DVCEDLIRYGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGKCGLLGYSG-WCHFCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLAKY 1136

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Xenopus
Match: polr3b (polymerase (RNA) III (DNA directed) polypeptide B [Source:NCBI gene;Acc:100158643])

HSP 1 Score: 813.913 bits (2101), Expect = 0.000e+0
Identity = 471/1140 (41.32%), Postives = 669/1140 (58.68%), Query Frame = 1

Query:  121 LVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSK-FFVQISNIKVDKPAIFE-YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAAL--------NMPAHKDIFESIGLESELHNELICSVEESIELG-IFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAK--YLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDD---LGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSV---TSKCFTDVIKDNEF-------LAIPVRKDRRQHAI-DDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGH-YRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRH 3456
            LV+ H+DSFN+F+  E+ KI+K + +V   +   ++++  NI V  P + E + +  P+ P +CR+R+ TY+A +TVDI+Y     ++I+N    IGR+PIMLRS  C L G +  E  + NEC  D GGYFI KG E+V L+QEQ++KNR+I+E     +KG +                VTS T   K++T +    G FY++++   E IP+ ++F           N+P  K    SI +E++L   +   +  + +   IF+Q QAL ++  +++       +M  S    + +      AR+ +   +L HVP  V    +R K  Y+ +M RR++LA+ G    DDRD+YG KRLE+ G  L+L+FED F+   S ++    + I   +A Q D  +++RQ  IT GM   I +GNW L RF M R GVTQVL+RLSY+  LG + RISSQFEK RK+SG R++  SQ G +C +DTPEGEACGLVKNLA +  IT ++  E+   +++       D     G     + + L+ +NG  +G       +    R  RRAG I+  VS+        +++ SDGGR+ RPYIIV N   S +T    QE+  G R ++D +   ++EY+D  E   +C VA  E  +T+  THL+I+P T LGV A LIP+PHHNQSPRNTYQCAMGKQA+G I  NQ  R D   + L  PQRP+  +    L  ++ LPAGQNA VA++ + GYDIEDA+V+NKASL+RG  + +    +KC      +  F       L    RK   +H I D DG  + G  + N  ++++K +  V    +  +   +    K  P  Y G   + + + + + +     + ++   Q R+PE+GDK SSRHGQKGV   +V  +DMP+ E G+ PDIIMNPHG+PSRMTVGKLIELLA K+ V+DG +   +AF   G KV   D    +  +G++  GK+ + SG  G  +E  +Y GPV+YQ+LKHMV DK+HAR  G    LTRQP  GRS DGGLR+GEMERDCLIGYGAS +L ER+M+SSD F   VC KCG+L  S  WC  C+SS HVSS+ +PYA KLL QEL ++ I PRL L+++
Sbjct:   38 LVKQHIDSFNYFINDEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNA-LPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEA---DRKGTVGA-------------SVTSSTHEKKSRTNLVVKQGRFYLKHNTLTEDIPIAIIFKVSVRLSVLGENLPELKKKKISILVEAKLIKSISLPLPLTCQKAQIFTQMQALKFIGNKVR-----RQRMWGSSGPKKSKIDE---ARELLASTILTHVP--VKEFHFRTKCIYIAVMVRRVILAQ-GANKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISSGNWSLKRFKMDRQGVTQVLSRLSYIAALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDM--EDGPIIKLAANLGVEDVNLLCGEELSYANVFLVFLNGNILGVIRDHQKLVNTFRLMRRAGYINEFVSISTNISDRCVYISSDGGRLCRPYIIVKNQR-SAVTNKHIQELSQGYRSFEDFLHESLVEYLDVNEE-NDCNVALYEHTITKHTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYSNQTFDKVMGPMLDANTRKQIWRHEILDADGICSPGEKVENKQVLVNKYMPTVTQTPLEGSSVPQQPQYKDVPITYKGPTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCETGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAF--GGSKVK--DVCEDLIRYGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGKCGLLGYSG-WCHFCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLAKY 1140

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Xenopus
Match: polr3b (polymerase (RNA) III (DNA directed) polypeptide B [Source:NCBI gene;Acc:100158643])

HSP 1 Score: 804.283 bits (2076), Expect = 0.000e+0
Identity = 466/1132 (41.17%), Postives = 661/1132 (58.39%), Query Frame = 1

Query:  121 LVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSK-FFVQISNIKVDKPAIFE-YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMF-AALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAK--YLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDD---LGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSV---TSKCFTDVIKDNEF-------LAIPVRKDRRQHAI-DDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGH-YRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRH 3456
            LV+ H+DSFN+F+  E+ KI+K + +V   +   ++++  NI V  P + E + +  P+ P +CR+R+ TY+A +TVDI+Y     ++I+N    IGR+PIMLRS  C L G +  E  + NEC  D GGYFI KG E+V L+QEQ++KNR+I+E     +KG +                VTS T   K++T +    G FY++++   E IP+ ++F  ++++     + +SI L   L                F   +    L   +K   NK  +     +S  ++ + +  AR+ +   +L HVP  V    +R K  Y+ +M RR++LA+ G    DDRD+YG KRLE+ G  L+L+FED F+   S ++    + I   +A Q D  +++RQ  IT GM   I +GNW L RF M R GVTQVL+RLSY+  LG + RISSQFEK RK+SG R++  SQ G +C +DTPEGEACGLVKNLA +  IT ++  E+   +++       D     G     + + L+ +NG  +G       +    R  RRAG I+  VS+        +++ SDGGR+ RPYIIV N   S +T    QE+  G R ++D +   ++EY+D  E   +C VA  E  +T+  THL+I+P T LGV A LIP+PHHNQSPRNTYQCAMGKQA+G I  NQ  R D   + L  PQRP+  +    L  ++ LPAGQNA VA++ + GYDIEDA+V+NKASL+RG  + +    +KC      +  F       L    RK   +H I D DG  + G  + N  ++++K +  V    +  +   +    K  P  Y G   + + + + + +     + ++   Q R+PE+GDK SSRHGQKGV   +V  +DMP+ E G+ PDIIMNPHG+PSRMTVGKLIELLA K+ V+DG +   +AF   G KV   D    +  +G++  GK+ + SG  G  +E  +Y GPV+YQ+LKHMV DK+HAR  G    LTRQP  GRS DGGLR+GEMERDCLIGYGAS +L ER+M+SSD F   VC KCG+L  S  WC  C+SS HVSS+ +PYA KLL QEL ++ I PRL L+++
Sbjct:   38 LVKQHIDSFNYFINDEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRN-ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEA---DRKGTVGA-------------SVTSSTHEKKSRTNLVVKQGRFYLKHNTLTEDIPIAIIFKVSVSILVEAKLIKSISLPLPL-----------TPAAAFCYDKQYHMLECALKFIGNKVRRQRMWGSSGPKKSK-IDEARELLASTILTHVP--VKEFHFRTKCIYIAVMVRRVILAQ-GANKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISSGNWSLKRFKMDRQGVTQVLSRLSYIAALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDM--EDGPIIKLAANLGVEDVNLLCGEELSYANVFLVFLNGNILGVIRDHQKLVNTFRLMRRAGYINEFVSISTNISDRCVYISSDGGRLCRPYIIVKNQR-SAVTNKHIQELSQGYRSFEDFLHESLVEYLDVNEE-NDCNVALYEHTITKHTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYSNQTFDKVMGPMLDANTRKQIWRHEILDADGICSPGEKVENKQVLVNKYMPTVTQTPLEGSSVPQQPQYKDVPITYKGPTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCETGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAF--GGSKVK--DVCEDLIRYGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGKCGLLGYSG-WCHFCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLAKY 1128

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Xenopus
Match: nfkbia (NFKB inhibitor alpha [Source:Xenbase;Acc:XB-GENE-491079])

HSP 1 Score: 624.78 bits (1610), Expect = 0.000e+0
Identity = 412/1181 (34.89%), Postives = 623/1181 (52.75%), Query Frame = 1

Query:   91 LVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVK-------------THGRVDIPSSKFFVQISNIKVDKPAIFEYQ-IKIPLYPQQCRVRNFTYAADVTVDIQY----PGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMII-----EKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNW-HLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVN---------LPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXX-XXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQ--EILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQ-------HTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDV-----IKDNEFLAIPVRKDRR--QHAI----DDDGTAAIGSVIRNGDIVISKIVN-PVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGH-YRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLA-----TSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLS 3450
            ++  Y +   LVR  LDSF+ F+++ + +IV+             T G V+ P  ++ ++   I + KP  +E      P+ P + R+RN TY+A + VDI       G      +++K  IG+IPIMLRS  C L GL++ +L   NEC  D GGYFI  G+E+V + QE+MA N + +      K+  T +    +  S + P   I   + +       K+ + +             + +P+ ++F AL   + +DI E I  + E   E++  V+ S++     Q Q          VA+N        P     +E+ +  A++ + + +L HV  S    + +A +LG M  R+LLA  G    DDRD YG KRL++ G  LA +F   F++L+  +++   K I+  K   L+    I+  +I++G+   + TGNW    +   AR+GV+QVLNRL++  TL HL R++S   +  K++  R +H +  G VC A+TPEG A GLVKNLA +  I+V          L     E LE     + +D    F          VNG  +G    P  +   LR+ RR+  +I   VS+  + +   + + +D GR+ RP +IV    +    R + Q  E       W DLV SG++EYID LE     ++A     L E+       +TH +I P+  LGV AS+IPFP HNQSPRNTYQ AMGKQA+GV  TN   R D   H L  PQ+PL  +       ++ LPAG N+IVAI  + GY+ ED++++N+++++RG F+SV  + + +          E    P R+  +  +HAI    DDDG  A G  +   D++I K V  P  +  + +T  ++    +   T    SE  IV + + T +   Y+  +++   +R P++GDK +SRHGQKG        +DMP+T +G+ PDII+NPH  PSRMTVG LIE L  K +   G   D++ F++A   VN     +++  +G+ + G EV+ +G  G  +   ++ GP +YQRLKHMV DK+H+R  G  Q L RQP  GRS DGGLR GEMERDC I +GA+Q L+ER+  +SDP++  VC  CG++A     T    C+ CR+   +S V MPYA KLL QELM++ I PR+  S
Sbjct:   29 VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTTGEVEEPP-RYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVVKEGEEQIQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSR-PTSSIWVSMLARGGQGAKKSAIGQR---IVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFE-DPEMMEMVKPSLDEAFVIQEQ---------NVALNFIGSRGAKPG--VTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELA--IKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIF----------VNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEE-ETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEST--NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDA---VNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS 1174

[Close]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Mouse
Match: Polr3b (polymerase (RNA) III (DNA directed) polypeptide B [Source:MGI Symbol;Acc:MGI:1917678])

HSP 1 Score: 829.321 bits (2141), Expect = 0.000e+0
Identity = 473/1149 (41.17%), Postives = 681/1149 (59.27%), Query Frame = 1

Query:   73 MDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSK-FFVQISNIKVDKPAIFE-YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAK--YLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDD---LGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGL------------FKSVTSKCFTDVIKDNEFLAIPVRKDRRQHAI-DDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYR-MERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRH 3456
            ++ K  L+  +     LV+ H+DSFN+F+ VE+ KI+K + +V   +   ++++  NI V  P + E + +  P+ P +CR+R+ TY+A +TVDI+Y     ++I+N    IGR+PIMLRS  C L G +  E  + NEC  D GGYFI KG E+V L+QEQ++KNR+I+E     +KG +                VTS T   K++T +    G FY++++   E IP+ ++F A+ + + ++I + IG E  +      S+EE  +  IF+Q QAL ++  +++    ++      P   + EE     AR+ +   +L HVP  V   ++RAK  Y  +M RR++LA+ G    DDRD+YG KRLE+ G  L+L+FED F+   S ++    + I   +A Q D  +++RQ  IT GM   I TGNW L RF M R GVTQVL+RLSY+  LG + RISSQFEK RK+SG R++  SQ G +C +DTPEGEACGLVKNLA +  IT ++  E+   +++       D     G       + L+ +NG  +G       + +  R  RRAG I+  VS+        +++ SDGGR+ RPYIIV     + +T    +E+  G R+++D +   ++EY+D  E   +C +A  E  + +  THL+I+P T LGV A LIP+PHHNQSPRNTYQCAMGKQA+G I  NQ  R D   + L  PQ+P+  +    L +++ LPAGQNA VA++ + GYDIEDA+V+NKASL+RG              K  T++ F  V+     L    RK   +H I D DG  + G  + N  ++++K +  V    +  +   +    K  P  Y G+  + + + + + +     + ++   Q R+PE+GDK SSRHGQKGV   +V  +DMP+ + G+ PDIIMNPHGFPSRMTVGKLIELLA K+ V+DG +   +AF   G KV   D    +  HG++  GK+ + SG  G  +E  +Y GPV+YQ+LKHMV DK+HAR  G    LTRQP  GRS DGGLR+GEMERDCLIGYGAS +L ER+M+SSD F   VC +CG+L  S  WC  C+SS HVSS+ +PYA KLL QEL ++ I PRL L+++
Sbjct:   23 VEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRN-ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEA---DRKGAVGA-------------SVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVR----RQRMWGGGPKKTKIEE-----ARELLASTILTHVP--VKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDM--EDGPIIKLAGNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPA-VTNKHMEELAQGYRNFEDFLHESLVEYLDVNE-ENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVM--GPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAF--GGSKVK--DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSG-WCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLAKY 1131

[Close]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Mouse
Match: Polr2b (polymerase (RNA) II (DNA directed) polypeptide B [Source:MGI Symbol;Acc:MGI:2388280])

HSP 1 Score: 622.468 bits (1604), Expect = 0.000e+0
Identity = 407/1175 (34.64%), Postives = 619/1175 (52.68%), Query Frame = 1

Query:   91 LVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSS------------KFFVQISNIKVDKPAIFEYQ-IKIPLYPQQCRVRNFTYAADVTVDIQY----PGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITK---KGGIKVPL-SEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNW-HLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVN---------LPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXX-XXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQ--EILAGLRDWDDLVRSGIIEYIDALEGYAECL------VAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDV-----IKDNEFLAIPVRKDRR--QHAI----DDDGTAAIGSVIRNGDIVISKIVN-PVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGH-YRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLA-----TSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRL 3441
            ++  Y +   LVR  LDSF+ F+++ + +IV+    +D+ +             ++ ++   I + KP  +E      P+ P + R+RN TY+A + VDI       G      +++K  IG+IPIMLRS  C L GL++ +L   NEC  D GGYFI  G+E+V + QE+MA N + +   K +K    G  +  L +   P   I   + +       K+ + +             + +P+ ++F AL   + +DI E I  + E   E++  V+ S++     Q Q          VA+N        P     +E+ +  A++ + + +L HV  S    + +A +LG M  R+LLA  G    DDRD YG KRL++ G  LA +F   F++L+  +++   K I+  K   L+    I+  +I++G+   + TGNW    +   AR+GV+QVLNRL++  TL HL R++S   +  K++  R +H +  G VC A+TPEG A GLVKNLA +  I+V          L     E LE     + +D    F          VNG  +G    P  +   LR+ RR+  +I   VS+  + +   + + +D GR+ RP +IV    +    R + Q  E       W DLV SG++EYID LE     L      +  +E      +TH +I P+  LGV AS+IPFP HNQSPRNTYQ AMGKQA+GV  TN   R D   H L  PQ+PL  +       ++ LPAG N+IVAI  + GY+ ED++++N+++++RG F+SV  + + +          E    P R+  +  +HAI    DDDG  A G  +   D++I K V  P  +  + +T  ++    +   T    SE  IV + + T +   Y+  +++   +R P++GDK +SRHGQKG        +DMP+T +G+ PDII+NPH  PSRMT+G LIE L  K +   G   D++ F++A   VN     +++  +G+ + G EV+ +G  G  +   ++ GP +YQRLKHMV DK+H+R  G  Q L RQP  GRS DGGLR GEMERDC I +GA+Q L+ER+  +SDP++  VC  CG++A     T    C+ CR+   +S V MPYA KLL QELM++ I PR+
Sbjct:   29 VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQR---IVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFE-DPEMMEMVKPSLDEAFVIQEQ---------NVALNFIGSRGAKPG--VTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELA--IKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIF----------VNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEST--NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDA---VNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1171

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Mouse
Match: Polr1b (polymerase (RNA) I polypeptide B [Source:MGI Symbol;Acc:MGI:108014])

HSP 1 Score: 394.43 bits (1012), Expect = 4.610e-118
Identity = 335/1166 (28.73%), Postives = 528/1166 (45.28%), Query Frame = 1

Query:  115 HSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSKFFVQ-------ISNIKVDKPAIFEYQI--KIPLYPQQCRVRNFTYAADVTVDIQYP--GPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKN---RMIIEKFKITKKGGIKVPLSEK-IPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESI--GLESE--LHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSL-----ITEGMFQCIFTGNWHL---MRFSMARSGVTQVLNRLSYLGTLGHLGRI--SSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGL-FKSVTSKCFTDVI------KDNEFLAIPVRKDRRQHAIDDDGTAAIGSVIRNGDIVISKI-VNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTF-----DGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLAT------SKEW---------CQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRL 3441
              L R H+DSFN+     +   V+      IP  +F  +       I +  +  P++ +  I   + +YP +CR R  TY   +T DI +   G    +IK     +G +PIM++SK+CNLY L    L   +E   + GGYFI  G E+V  M     +N    M+  K+K    G  +  +S + + +E    ++  + + N T   V  N   F  +  LF   +PL     AL   +   IF+ +  G E +    N +   +   IE G  SQ+Q L +L    +V +       + P      E +  +  Q IC  + ++        + +   L LMTR++     G    D+ D    + +   G    +  ++K ++ + ++++ L K   A KAN     + + +       +T      + TGN      + F +  SG+  V ++L++L  L H   +   + F K+R  +  R +  S  GF+C   TP+G  CGL+ +L  + E+             +        D    R  S    ++++GV +GW  + +A   A   RR   L    +  +    ME   +   G   + P + +      +L R V              +  G  E I  +E     +  FE+       TH ++ P + L V+A+ IPF  HNQSPRN YQC MGKQ +G        R D   +RL  PQ PL    +    +    P G NAIVA++ + GYD+EDA+++NKAS ERG    SV    F D+       +DN    +     R    +DDDG   IG+ +  GD   S + +N  +  VV                 Y  S+   VV+ I         G ++   +     R P +GDK +SRHGQKG++SR+   +DMP+TE G++PDI+ NPHGFPSRMT+G LIE +A KSA + G   D++ F  +        +  +++A G++  G E + SG +G  +E D++ G V+YQRL+HMV DK   R  G   ++T QP  GR+  GG+R GEMERD L+ +G S +L +R+   SD   A +C +CG L +         W         C +C  S  + +V +PY  +  + EL  + I  +L
Sbjct:   36 QDLTRAHVDSFNYAALEGLSHAVQA-----IPPFEFAFKDERISLTIVDAVISPPSVPKGTICKDLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQ---FLGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFGVSMRCVREEHSAVNMNLHYVENGT---VMLN---FIYRKELFF--LPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQVLNYLGECFRVKL-------SLPDWYPNVEAAEFLLNQCICIHLQSN--------TDKFYLLCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFLMFLKEKMENWLVSIKIVLDK--RAQKANVSINNENLMKIFSMGTELTRPFEYLLATGNLRSKTGLGF-LQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESW-GFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPALLCGLGVTPVDTAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTLRRFKVLREKRIPPW----MEVALIPMTGKPSLYPGLFLFTTPC-RLVRPVQN------------LELGREELIGTMEQLFMNVAIFEDEVFGGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLPFIGAKLEYGDPYYSYLNLNTGEGFVV-----------------YYKSKENCVVDNIKVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHMCVECGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDTIDTVSVPYVFRYFVAELAAMNIKVKL 1132

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Mouse
Match: Polr1b (polymerase (RNA) I polypeptide B [Source:MGI Symbol;Acc:MGI:108014])

HSP 1 Score: 131.724 bits (330), Expect = 9.444e-31
Identity = 177/713 (24.82%), Postives = 296/713 (41.51%), Query Frame = 1

Query:  115 HSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSKFFVQ-------ISNIKVDKPAIFEYQI--KIPLYPQQCRVRNFTYAADVTVDIQYP--GPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKN---RMIIEKFKITKKGGIKVPLSEK-IPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESI--GLESE--LHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSL-----ITEGMFQCIFTGNWHLMRFS-----MARSGVTQVLNRLSYLGTLGHLGRI--SSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQ 2160
              L R H+DSFN+     +     +H    IP  +F  +       I +  +  P++ +  I   + +YP +CR R  TY   +T DI +   G    +IK     +G +PIM++SK+CNLY L    L   +E   + GGYFI  G E+V  M     +N    M+  K+K    G  +  +S + + +E    ++  + + N    TV  N   F  +  LF   +PL     AL   +   IF+ +  G E +    N +   +   IE G  SQ+Q L +L    +V +       + P      E +  +  Q IC  + ++        + +   L LMTR++     G    D+ D    + +   G    +  ++K ++ + ++++ L K   A KAN     + + +       +T      + TGN   +R       +  SG+  V ++L++L  L H   +   + F K+R  +  R +  S  GF+C   TP+G  CGL+ +L  + E+             +        D    R  S    ++++GV +GW  + +A   A   RR   L    +  +    ME   +   G   + P + +      +L R V              +  G  E I  +E     +  FE+       TH ++ P + L V+A+ IPF  HNQSPRN YQC MG Q
Sbjct:   36 QDLTRAHVDSFNYAALEGL-----SHAVQAIPPFEFAFKDERISLTIVDAVISPPSVPKGTICKDLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQ---FLGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFGVSMRCVREEHSAVNMNLHYVENG---TVMLN---FIYRKELFF--LPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQVLNYLGECFRVKL-------SLPDWYPNVEAAEFLLNQCICIHLQSN--------TDKFYLLCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFLMFLKEKMENWLVSIKIVLDK--RAQKANVSINNENLMKIFSMGTELTRPFEYLLATGN---LRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESW-GFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPALLCGLGVTPVDTAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTLRRFKVLREKRIPPW----MEVALIPMTGKPSLYPGLFLFTTP-CRLVRPVQN------------LELGREELIGTMEQLFMNVAIFEDEVFGGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGLQ 694

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Mouse
Match: Polr3b (polymerase (RNA) III (DNA directed) polypeptide B [Source:MGI Symbol;Acc:MGI:1917678])

HSP 1 Score: 89.3521 bits (220), Expect = 6.854e-20
Identity = 56/179 (31.28%), Postives = 96/179 (53.63%), Query Frame = 1

Query:  658 VTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAK--YLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYL 1188
            VTS T   K++T +    G FY++++   E IP+ ++F A+ + + ++I + IG E  +      S+EE  +  IF+Q QAL ++  +++    ++      P         +  AR+ +   +L HVP  V   ++RAK  Y  +M RR++LA+ G    DDRD+YG KRLE+ G + 
Sbjct:   12 VTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVR----RQRMWGGGPKKT-----KIEEARELLASTILTHVP--VKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQHF 178

[Close]

BLAST of DNA-directed RNA polymerase subunit beta vs. UniProt/SwissProt
Match: sp|P25167|RPC2_DROME (DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila melanogaster OX=7227 GN=RpIII128 PE=2 SV=2)

HSP 1 Score: 833.943 bits (2153), Expect = 0.000e+0
Identity = 466/1151 (40.49%), Postives = 687/1151 (59.69%), Query Frame = 1

Query:   73 MDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSK-FFVQISNIKVDKPAIFE-YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDDLGTFRHQSG-------MNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVH-QEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSV---TSKCFTDVIKDNEFLAI--PVRKDR------RQHAIDDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPA-PTCYSGSEPTIVVEKITTFDGHYR-MERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRH 3456
            +  K  LV  +     LV+ H+DSFNHF+ V++ KIVK +  V   +   F+++  +++V KP I + + I     P +CR+R+ TY+A +TVDI+Y   G + IK    +IGR+P+MLR   C L G S  EL++ NEC  D GGYF+ +G E+V L+QEQ++ N+M+ E F      G+            + C VTS T   K++T V    G +Y++++   + IP+ V+F AL + + ++I   IG++S+  N    S+ ++  L +F+Q++AL ++  ++ V    ++  T +P+           AR+ +   +L HVP    NL  +A Y+ +M RR++ AE      DDRD+YG KRLE+ G+ L++MFED F+ +   L+    K I   KA Q D  +++R + IT G+   I +GNW + RF M R+GVTQVL+RLSY+  LG + R++SQFEK RK+SG R++  SQ G +C +DTPEGEACGLVKNLA +  IT     E +E+  M +  +++  +   R  SG       + L+ +NG  +G T     +   LR  RR G +  +VSV+       +++ +DGGR+ RPY+IV N     L +  H  E+  G+R +DD +  G+IEY+D  E   +  +A+ E Q+ ++ THL+I+P T LGV A L+P+PHHNQSPRNTYQCAMGKQA+G+I  NQ  R D   + LV P  P+  S    LTN+  LPAGQNA VA++ + GYDIEDA+++NKAS++RG  + +    SKC      +  F  I  P++         +   +D DG  A G  ++N  I+I+K +  V        ++++V  P  A P  Y G EP+ +   + + +     + ++   Q R PE+GDK SSRHGQKGV   +V  +DMP+ + G+ PD+IMNPHGFPSRMTVGK +ELL  K+ +++G +   +AF   G KV   D Q+ +  HGF+  GK+   SG  G  +E  +Y+GPV+YQ+LKHMVQDK+HAR  G    LTRQP  GRS +GGLR+GEMERDCLI YGAS ++ ER+M+SSD F   VC  CG +A    WC  C+SS +VS + MPYA KLL QEL ++ + P++ L  +
Sbjct:   31 LTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVTSGADPLFYLKYLDVRVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYTR-GTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWNKMLTEDFN-----GV------------VQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSMTDDIPIVVIFKALGVVSDQEIQSLIGIDSKSQNRFGASLIDAYNLKVFTQQRALEYMGSKL-VVKRFQSATTKTPSEE---------ARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMRAAQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHIT----TEVEERPVMIV--AFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENR--RPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDVNEE-NDSFIAWNEDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQV--PYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAF--GGSKVE--DIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAYC-SWCHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMILENY 1137

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BLAST of DNA-directed RNA polymerase subunit beta vs. UniProt/SwissProt
Match: sp|Q9NW08|RPC2_HUMAN (DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens OX=9606 GN=POLR3B PE=1 SV=2)

HSP 1 Score: 830.091 bits (2143), Expect = 0.000e+0
Identity = 474/1149 (41.25%), Postives = 679/1149 (59.09%), Query Frame = 1

Query:   73 MDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSK-FFVQISNIKVDKPAIFE-YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAK--YLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDD---LGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGL------------FKSVTSKCFTDVIKDNEFLAIPVRKDRRQHAI-DDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYR-MERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRH 3456
            ++ K  L+  +     LV+ H+DSFN+F+ VE+ KI+K + +V   +   ++++  NI V  P + E + +  P+ P +CR+R+ TY+A +TVDI+Y     ++I+N    IGR+PIMLRS  C L G +  E  + NEC  D GGYFI KG E+V L+QEQ++KNR+I+E     +KG +                VTS T   K++T +    G FY++++   E IP+ ++F A+ + + ++I + IG E  +      S+EE  +  IF+Q QAL ++  +++    ++      P   + EE     AR+ +   +L HVP  V   ++RAK  Y  +M RR++LA+ G    DDRD+YG KRLE+ G  L+L+FED F+   S ++    + I   +A Q D  +++RQ  IT GM   I TGNW L RF M R GVTQVL+RLSY+  LG + RISSQFEK RK+SG R++  SQ G +C +DTPEGEACGLVKNLA +  IT ++  E+   +++       D     G       + L+ +NG  +G       +    R  RRAG I+  VS+        +++ SDGGR+ RPYIIV     + +T    +E+  G R+++D +   ++EY+D  E   +C +A  E  + +  THL+I+P T LGV A LIP+PHHNQSPRNTYQCAMGKQA+G I  NQ  R D   + L  PQ+P+  +    L  ++ LPAGQNA VA++ + GYDIEDA+V+NKASL+RG              K  T++ F  V+     L    RK   +H I D DG  + G  + N  ++++K +  V    +  +   +    K  P  Y G+  + + + + + +     + ++   Q R+PE+GDK SSRHGQKGV   +V  +DMP+ + G+ PDIIMNPHGFPSRMTVGKLIELLA K+ V+DG +   +AF   G KV   D    +  HG++  GK+ + SG  G  +E  +Y GPV+YQ+LKHMV DK+HAR  G    LTRQP  GRS DGGLR+GEMERDCLIGYGAS +L ER+M+SSD F   VC +CG+L  S  WC  C+SS HVSS+ +PYA KLL QEL ++ I PRL LS++
Sbjct:   23 VEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRN-ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEA---DRKGAVGA-------------SVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVR----RQRMWGGGPKKTKIEE-----ARELLASTILTHVP--VKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDM--EDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPA-VTNKHMEELAQGYRNFEDFLHESLVEYLDVNE-ENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVM--GPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAF--GGSKVK--DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSG-WCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSKY 1131

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BLAST of DNA-directed RNA polymerase subunit beta vs. UniProt/SwissProt
Match: sp|P59470|RPC2_MOUSE (DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus OX=10090 GN=Polr3b PE=1 SV=2)

HSP 1 Score: 829.321 bits (2141), Expect = 0.000e+0
Identity = 473/1149 (41.17%), Postives = 681/1149 (59.27%), Query Frame = 1

Query:   73 MDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSK-FFVQISNIKVDKPAIFE-YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAK--YLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDD---LGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGL------------FKSVTSKCFTDVIKDNEFLAIPVRKDRRQHAI-DDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYR-MERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRH 3456
            ++ K  L+  +     LV+ H+DSFN+F+ VE+ KI+K + +V   +   ++++  NI V  P + E + +  P+ P +CR+R+ TY+A +TVDI+Y     ++I+N    IGR+PIMLRS  C L G +  E  + NEC  D GGYFI KG E+V L+QEQ++KNR+I+E     +KG +                VTS T   K++T +    G FY++++   E IP+ ++F A+ + + ++I + IG E  +      S+EE  +  IF+Q QAL ++  +++    ++      P   + EE     AR+ +   +L HVP  V   ++RAK  Y  +M RR++LA+ G    DDRD+YG KRLE+ G  L+L+FED F+   S ++    + I   +A Q D  +++RQ  IT GM   I TGNW L RF M R GVTQVL+RLSY+  LG + RISSQFEK RK+SG R++  SQ G +C +DTPEGEACGLVKNLA +  IT ++  E+   +++       D     G       + L+ +NG  +G       + +  R  RRAG I+  VS+        +++ SDGGR+ RPYIIV     + +T    +E+  G R+++D +   ++EY+D  E   +C +A  E  + +  THL+I+P T LGV A LIP+PHHNQSPRNTYQCAMGKQA+G I  NQ  R D   + L  PQ+P+  +    L +++ LPAGQNA VA++ + GYDIEDA+V+NKASL+RG              K  T++ F  V+     L    RK   +H I D DG  + G  + N  ++++K +  V    +  +   +    K  P  Y G+  + + + + + +     + ++   Q R+PE+GDK SSRHGQKGV   +V  +DMP+ + G+ PDIIMNPHGFPSRMTVGKLIELLA K+ V+DG +   +AF   G KV   D    +  HG++  GK+ + SG  G  +E  +Y GPV+YQ+LKHMV DK+HAR  G    LTRQP  GRS DGGLR+GEMERDCLIGYGAS +L ER+M+SSD F   VC +CG+L  S  WC  C+SS HVSS+ +PYA KLL QEL ++ I PRL L+++
Sbjct:   23 VEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRN-ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEA---DRKGAVGA-------------SVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVR----RQRMWGGGPKKTKIEE-----ARELLASTILTHVP--VKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDM--EDGPIIKLAGNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPA-VTNKHMEELAQGYRNFEDFLHESLVEYLDVNE-ENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVM--GPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAF--GGSKVK--DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSG-WCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLAKY 1131

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BLAST of DNA-directed RNA polymerase subunit beta vs. UniProt/SwissProt
Match: sp|Q10233|RPC2_SCHPO (DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc2 PE=2 SV=1)

HSP 1 Score: 816.224 bits (2107), Expect = 0.000e+0
Identity = 467/1157 (40.36%), Postives = 686/1157 (59.29%), Query Frame = 1

Query:   73 MDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRV--DIPSSKFFVQISNIKVDKPAIFEYQ-IKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESI-GLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAK--YLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINA-NKANQLDPTQY--IRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYS---DDL----GTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFK-------SVTSKCFTDVIKDNEFLAIPVRKDR------RQHAIDDDGTAAIGSVIRNGDIVISK--IVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVE-KITTFDGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTL 3447
            ++ K  L+  +     LV+ HLDS+N+FV+V++ KIV+ + +V  D+    F+++  +I+V  P   +   I+  + P +CR+R+ TY A++ VDI+Y   G ++++     IGR+P+MLRS  C L G +  E+   NEC  D GGYFI KGTE+V L+QEQ++KNR+I+E     KKG  +               VTS T   K+KT V   +G  Y++++   + IP+ V+  A+ + + ++IFE + G E+   +    S+EE  +L I++ +QAL ++  R+KV  N+       P   E        A + +   VL H+  +V NL +R K  Y+G+M RR+L+A    +  DDRD+ G KRLE+ G  LAL+FED F+   S L++ + K +   ++  + D      +    IT+GM + + TGNW L RF M R+GVT VL+RLSY+  LG + RI+SQFEK RK+SG R++  SQ G +C +DTPEGEACGLVKNLA +  IT +      E+ E  I+ +Y+   +D+    G   H  G  L+ +NG  +G +  P    A+ R+ RR+G I P + ++  T    + + +DGGR+ RP IIV NG + K+     + +  G   ++D ++ G++EY+D  E   + L++  E  +T   THL+I+P T LG VA LIP+PHHNQSPRNTYQCAMGKQA+G IA NQ +R D   + +V PQ+P+  +    L  Y  LPAGQNA VAI+ + GYDIEDA+V+NK+S++RG  +       SV  + + +   D   +  P R         +   ++DDG A +G  ++ G I ++K    N + + +      +     K  P  Y   EP  + +  +TT D    + +V   Q R+PE+GDK SSRHGQKGV   +V  +DMP+ + G+ PDIIMNPHGFPSRMTVGK+IELL+ K  V+ G     + F   G KV   D   ++  HG++ SGK+++ SG  G  +E  ++ GP++YQ+LKHMV DK+HAR  G    LTRQP  GRS DGGLR+GEMERDCLI YGASQ+L ER+M+SSD     VC +CG+L   K WC  C+S++ V  + +PYA KLL QEL+++ I PRL L
Sbjct:   47 IEDKWQLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVQANEKVTSDV-EPWFYLKYLDIRVGAPVRTDADAIQASISPHECRLRDLTYGANIYVDIEYT-RGKQVVRRRNVPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTEKVILVQEQLSKNRIIVEAE--PKKGLWQ-------------ASVTSSTHERKSKTYVITKNGKLYLKHNSVADDIPIVVVLKAMGLQSDQEIFELVAGAEASYQDLFAPSIEECAKLNIYTAQQALEYIGARVKV--NRRAGANRLPPHEE--------ALEVLAAVVLAHI--NVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDRDYVGNKRLELAGQLLALLFEDLFKKFNSDLKLNIDKVLKKPHRTQEFDAYNQLTVHSDHITQGMVRALSTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRSLQASQFGMLCTSDTPEGEACGLVKNLALMTHITTD------EEEEPIIKLAYAFGIEDIHVISGRELHSHGTYLVYLNGAILGISRYPSLFVASFRKLRRSGKISPFIGIFINTHQRAVFISTDGGRICRPLIIVQNG-LPKVESKHIRLLKEGKWGFEDFLKQGLVEYVDVNE-ENDSLISVYERDITPDTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVIVRKYPNGTHDR--IGDPQRDPETGEVVWKHGVVEDDGLAGVGCRVQPGQIYVNKQTPTNALDNSITLGHTQTVESGYKATPMTYKAPEPGYIDKVMLTTTDSDQTLIKVLMRQTRRPELGDKFSSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKVGVLRGTLEYGTCF--GGTKVE--DASRILVEHGYNYSGKDMLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDACDVDVCGQCGLLGY-KGWCNSCQSTREVVKMTIPYAAKLLFQELLSMNIVPRLAL 1159

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BLAST of DNA-directed RNA polymerase subunit beta vs. UniProt/SwissProt
Match: sp|P22276|RPC2_YEAST (DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RET1 PE=1 SV=2)

HSP 1 Score: 795.038 bits (2052), Expect = 0.000e+0
Identity = 452/1143 (39.55%), Postives = 677/1143 (59.23%), Query Frame = 1

Query:   82 KHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRV--DIPSSKFFVQISNIKVDKPAIFEYQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESI-GLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINA-NKANQLDPTQYIR--QSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNL---IMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVH-QEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDVIK----DNEFLAIPVRKDRR-----QH-AIDDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTF-DGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTL 3447
            K  L+  +     LV+ HLDSFN+FV+ ++ KI+K +  +  D+   +F+++  +I+V K +    +  +   P +CR+R+ TY+A + VDI+Y   G  +I ++   IGR+PIMLRS  C LY     ++ + NEC  D GGYFI  GTE+V L+QEQ++KNR+I+E     +K GI            +   VTS T   K+KT V   +G  Y++++   E IP+ ++  A  + +  +I + + G +S   +    ++EES +L I++Q+QAL ++  ++K    +  K+T            L    + I   V+ H+     +   +A Y+ +MTRR+++A       DDRD+ G KRLE+ G  ++L+FED F+   +  ++ + K +   N+A + D    I    + IT G+ + I TGNW L RF M R+GVT VL+RLSY+  LG + RISSQFEK RK+SG RA+  SQ G +C ADTPEGEACGLVKNLA +  IT +   +E+E ++        +D+ T    + ++L   + +NG  IG    P       R  RR G +   +S+Y  +    +H+ +DGGR+ RP IIV +G      + +H +++L G  D+DD ++ G++EY+D  E   +  +A  E  +    THL+I+P T LG VA LIP+PHHNQSPRNTYQCAMGKQA+G IA NQ KR D   + +  PQ+P+  +    L +Y  LPAGQNA VA++ + GYDIEDA+V+NK+S++RG  +  T +  T V+K      + +   +R D       QH ++  DG   +G  +++G I I+K V             +     + AP  Y G EP+ + + + +  D    + +V   Q R+PE+GDK SSRHGQKGV   +V  +DMP+ + G+VPDIIMNPHGFPSRMTVGK+IEL++ K+ V++G     + F   G K+   D   ++   GF+ SGK+++ SG  G  ++  ++ GP++YQ+LKHMV DK+HAR  G    LTRQP  GRS DGGLR+GEMERDC+I YGASQ+L ER+M+SSD F   VC+KCG++  S  WC  C+S++++  + +PYA KLL QEL+++ I PRL L
Sbjct:   44 KWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDV-DPEFYLKYVDIRVGKKSSSSTKDYLTP-PHECRLRDMTYSAPIYVDIEYT-RGRNIIMHKDVEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEA---DEKKGI------------VQASVTSSTHERKSKTYVITKNGKIYLKHNSIAEEIPIAIVLKACGILSDLEIMQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKVKTM--RRQKLTI-----------LQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTD---DEEEPIKKLCYVLGVEDI-TLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGGRICRPLIIVSDG--QSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEE-NDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCF--GGSKLE--DMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSG-WCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRL 1143

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BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Match: A0A5K3EII2 (DNA-directed RNA polymerase subunit beta OS=Mesocestoides corti OX=53468 PE=4 SV=1)

HSP 1 Score: 921.768 bits (2381), Expect = 0.000e+0
Identity = 498/1163 (42.82%), Postives = 729/1163 (62.68%), Query Frame = 1

Query:   73 MDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSKFFVQISNIKVDKPAIFEYQIKIP-LYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTS--PTSMXXXXRSLLMARQEICRRVL-NHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDVIKDNEF-----LAIPV------RKDRRQHAIDDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEA------------SKVMDPKPAPTCYSGSEPTIVVEKI--TTFDGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCR-SSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRHETAVL 3471
            + +K  LV  + +   LV+ H+DSFNHF+E E+  IV+ + RV +PS+ ++++ +N+ +  P + +  +    + P  CR+R+ TYA ++ VDI +    ++++  +  +IGR+P+ML+S  C L G S  EL +  EC  D GGYFI  G+E+V LMQEQM+KNR+I+E    TKKG              ++C VTS +   K+KT +    G  ++Q++ F   +P+ ++  A+ + + K+I  S+G E  +  +++ S+++ IE  + +  +A  WL  ++++   +  ++  +   +  +  +R +    Q + R ++  H+P    N   R  +LG M R +++  +G I  DDRDFYG KR+E+ G+ +AL+FED F++    L + ++K     +    D +++I+  LIT+ + + I TGNW + RF M R GVTQ+++RLSY+  LGH+ R++SQFEK RKI+G RAIH SQ G VC +DTPEGEACGLVKN++ +  ITV +   + + L   I+  +   L  F + +   ++ VNG PIG+T +P  +AA +R  RRA  IH  VSV+ +  +  +HV SDGGR+ RPYIIV  G    +T+ +  ++ A +  W+D ++ G+IEY+D+ E   +CL+A +E  +T Q TH++IDPAT LGVVA LIP+PHHNQSPRNTYQCAMGKQA+G +A NQ  R D  Q ++V PQRPL  S    + ++  LPAGQNAIVAI+ + GYD+EDA+++NKASL+RG  ++   +     +K +E      L  PV      +  R    ++ DGTAA+G+ ++N  IVI+K +  VK  V +A EA            +  ++ K  P  Y G EP+  V+K+  +T +G+  + +V   Q R+PEVGDK SSRHGQKGV+  +V   DMP +  G+ PDIIMNPHGFPSRMTVGKL+ELL +K+A +DG  RD SAFS  G  V       V+  HG    GKE+++SG  G  +E  +Y GP++YQRLKHMV DKVHAR  G    LTRQP  GRS +GGLRVGEMERDC I YGASQ+L ER++ SSD + A VCE CG+LA+S+ WCQ CR SSQ +SSV MPYA KLL+QELM ++I PRL L+    + L
Sbjct:   13 LKNKERLVPAFLSVKGLVKLHIDSFNHFIETEIRNIVQANSRVSVPSANWWLEYNNVYLKPPTVNDGSVVASRVTPHDCRLRDLTYAGEILVDITFTRQ-HEIVSKKGVLIGRMPLMLKSSACVLNGKSAFELMKMKECPLDPGGYFIINGSEKVILMQEQMSKNRIIVEGD--TKKG--------------LICSVTSSSAQTKSKTNILLKDGRLFLQHNSFTVDVPIVILIKAMGITSDKEILRSVGREEAIWAKVVPSLKQCIEAKVHTTLEACKWLQSKLRMPRFRTVRIGPAGGKSGSDITDRDVQADIQRMLRDIIITHIPMEKMNFEDRVLFLGQMIRYLIMLADGKIPPDDRDFYGNKRVELAGSLIALLFEDIFKTFNEDLWLTVSKLDTKRRVAPFDISRHIKTWLITDQLNRAISTGNWVIKRFRMMRQGVTQLVSRLSYVAALGHMTRVTSQFEKTRKIAGPRAIHSSQWGLVCPSDTPEGEACGLVKNVSLMCHITVEV---DDKNLIQLIKSYHVYPLREFSYGANEYIVYVNGKPIGFTEEPEELAAVIRGLRRARYIHEFVSVHCKPVLRCVHVVSDGGRLCRPYIIVSKGK-PLVTQDMLDDLAAKVLSWEDFLKKGVIEYLDSNE-LNDCLIAMDEADITAQTTHMEIDPATILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGTVALNQQIRFDTLQLQMVYPQRPLVQSKTIQMLHFDQLPAGQNAIVAIMSYSGYDVEDALIVNKASLDRGFARACVYRRIGLHLKMHESGVYDRLMGPVIDRETGKPRREDEVLEADGTAAVGACVQNQRIVINKEMPAVK--VSSAAEANAGQLGLHSATPANAIEFKRCPAEYRGIEPS-YVDKVMFSTSEGNQAVVKVLLRQTRRPEVGDKFSSRHGQKGVVGLIVPQADMPVSPQGICPDIIMNPHGFPSRMTVGKLMELLGSKAAAVDGRLRDGSAFS--GDPVE--SLSEVLAEHGHHYLGKEILISGVTGEPLEAYIYFGPIYYQRLKHMVVDKVHARSRGPVTALTRQPTEGRSREGGLRVGEMERDCFIAYGASQLLLERLLTSSDAYDAVVCEGCGLLASSRSWCQYCRSSSQRISSVCMPYACKLLLQELMCMRILPRLQLAAPSESAL 1146

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BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Match: A0A267GS75 (DNA-directed RNA polymerase subunit beta (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig021378g2 PE=3 SV=1)

HSP 1 Score: 919.072 bits (2374), Expect = 0.000e+0
Identity = 514/1151 (44.66%), Postives = 712/1151 (61.86%), Query Frame = 1

Query:   73 MDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSS-KFFVQISNIKVDKPAIFEYQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRR-----VLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDDL-GTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFK-------SVTSKCFTDVIKDNEFLAIPVRK-----DRRQHAI-DDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKV---MDPKPAPTCYSGSEPTIVVEKI---TTFDGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTL 3447
            ++ K  LV  +     LV+ H++SFNHFV  E+  I+  + RV   +  +++++  NI V +P++ E  I   + P +CR+R+ TYAA + VDI Y   G++ +  ++  IG IPIMLRS  C L G +  ELTR  EC  D GGYFI +GTE+V L+QEQ++KNR+I+E      KG              I+C VTS T   K+KT +    G F+V+++ F E +P  V+  A+ M   ++I ++IG E E+ + L+  +E+  +L +F+Q QAL WL  +I+VA       T  P      ER     R + CR+     VL HVP    N   +  YL LM R+++LA+ GLI  DDRD+YG KRLE+ G+ LAL+FED F+     L+    + +  N+A   D  ++IRQ LIT G+   I +GNW++ RF M R GVTQVL RLSY+  LGH+ RI+SQFEK RK+SG R++  SQ G +C +DTPEGE+CGLVKNLA +  +T+++      +L + +     D L G   H     L+ +NG+ +G   Q   +   LR  RRAG +H  VSV+     + +HV SDGGR+ RPYIIV   G   + R    E+ +GLRDW+D +  G+IEY+D  E   +C +A     +T+  THL+I+P T LGV A +IP+PHHNQSPRNTYQCAMGKQA+G +A NQ++R D  Q+ LV PQRPL  +    L  Y  LPAGQNA VA++ + GYDIEDA+V+NKASL+RG  +       SV  K + D  +  + L  P+        RR H + + DG A +G+ + +  ++++K +     P+V+AT ++ V   ++ K  P  Y G EP   VEK+    T D H  + +++  Q R+PE+GDK SSRHGQKGV   +V   DMP++ DG+VPDIIMNPHG+PSRMTVGKL+ELL +K+AV+DG ++D +AF   G +       +++R HGF+  GK+V+ SG  G  ME  VY+GP++YQ+LKHMV DK+HAR  G    +TRQP  GR+ DGGLR+GEMERDCLIGYGAS +L ER+MLSSD F   VC  CG+L   + WCQ CRSS  V SV MPYA KLL QEL ++ I PRLTL
Sbjct:   22 LEDKWKLVPAFLKVRGLVKQHIESFNHFVNTEVRAIMLANQRVVCDADQRWYLEYKNIYVGRPSVEEGPIVKEISPHECRLRDLTYAAPLLVDIAYI-RGDQRVNMDRVPIGSIPIMLRSSNCLLTGKTPNELTRLRECPLDPGGYFIIRGTEKVILLQEQLSKNRVIVED---DNKG-------------HIMCSVTSSTHQRKSKTGLVAKKGIFHVEHNSFGELVPAVVVLKAMGMICDQEIVQTIGTEDEVLSALLPCLEQCHKLKLFTQNQALAWLSNKIRVAK------TYGPAWKASRERKDAEGRIDDCRQTLKDIVLAHVPVEHWNFHQKCVYLCLMLRKLILAQAGLIPPDDRDYYGNKRLELAGSLLALLFEDHFKKFNDNLRFVANEMLPKNQATAFDIHKHIRQDLITNGLVAAISSGNWNIKRFRMERQGVTQVLTRLSYISALGHMTRINSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALMSHVTMDVDDAPLLRLILDLGVEPVDSLRGQQLHAEHSFLVFLNGLLVGSCRQWPRLVRHLRRLRRAGRLHQFVSVHSHAAHKAVHVASDGGRLCRPYIIV-EAGRPLVARRHLDELASGLRDWEDFLHEGLIEYLDVNE-ENDCRIAVYVKDITDDTTHLEIEPFTLLGVCAGIIPYPHHNQSPRNTYQCAMGKQAMGTLAYNQNERFDTVQYLLVYPQRPLVQTKPLELIGYHELPAGQNACVAVMSYSGYDIEDALVVNKASLDRGFGRCFYYRRQSVQMKRYADANQSTDRLMGPMVDINTGLPRRGHEVLEADGVAYVGARVSDRQVLVNKEM-----PIVSATMSAAVNSNVEYKSVPQDYKGMEPA-YVEKVMVANTEDNH-GLVKLQLRQTRRPEIGDKFSSRHGQKGVCGLIVDQADMPFSRDGVVPDIIMNPHGYPSRMTVGKLLELLGSKAAVLDGAFKDGTAFGGDGAE----QLGAILREHGFNSLGKDVLTSGVTGETMEAYVYSGPIYYQKLKHMVLDKIHARARGPCTLITRQPTEGRARDGGLRLGEMERDCLIGYGASMLLVERLMLSSDAFDTKVCSACGLLC-GRAWCQYCRSSTAVCSVRMPYACKLLFQELQSMNIAPRLTL 1135

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BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Match: A0A0R3UF74 (DNA-directed RNA polymerase subunit beta OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS5726 PE=3 SV=1)

HSP 1 Score: 915.99 bits (2366), Expect = 0.000e+0
Identity = 498/1167 (42.67%), Postives = 729/1167 (62.47%), Query Frame = 1

Query:   73 MDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSKFFVQISNIKVDKPAIFEYQIKIP-LYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTS--PTSMXXXXRSLLMARQEICRRVL-NHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQS----KRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDVIKDNEF-----LAIPV------RKDRRQHAIDDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEA------------SKVMDPKPAPTCYSGSEPTIVVEKI--TTFDGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCR-SSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRHETAVL 3471
            + +K  LV  + +   LV+ H+DSFNHF+E E+  IV+ + RV +PS+ ++++ +N+ +  P + +  +    + P  CR+R+ TYA ++ VDI +    ++++  +  +IGR+P+ML+S  C L G S  EL +  EC  D GGYFI  G+E+V LMQEQM+KNR+I+E    TKKG              ++C VTS +   K+KT +    G  ++Q++ F   +P+ ++  A+ + + K+I  S+G E  +  +++ S+++ IE  + +  +A  WL  ++++   +  ++  +   +  +  +R +    Q + R ++  H+P    N   R  +LG M R +++  +G I  DDRDFYG KR+E+ G+ +AL+FED F++    L + ++K     +    D +++I+  LIT+ + + I TGNW + RF M R GVTQ+++RLSY+  LGH+ R++SQFEK RKI+G RAIH SQ G VC +DTPEGEACGLVKN++ +  ITV +   + + L   I+  +   L  F + +   ++ VNG PIG+T +P  +AA +R  RRA  IH  VSV+ +  +  +HV SDGGR+ RPYIIV  G    +T+ +  ++ A +  W+D ++ G+IEY+D+ E   +CL+A +E  +T Q TH++IDPAT LGVVA LIP+PHHNQSPRNTYQCAMGKQA+G +A NQ      R D  Q ++V PQRPL  S    + ++  LPAGQNAIVAI+ + GYD+EDA+++NKASL+RG  ++   +     +K +E      L  PV      +  R    ++ DGTAA+G+ ++N  IVI+K +  VK  V +A EA            +  ++ K  P  Y G EP+  V+K+  +T +G+  + +V   Q R+PEVGDK SSRHGQKGV+  +V   DMP +  G+ PDIIMNPHGFPSRMTVGKL+ELL +K+A +DG  RD SAFS  G  V       V+  HG    GKE+++SG  G  +E  +Y GP++YQRLKHMV DKVHAR  G    LTRQP  GRS +GGLRVGEMERDC I YGASQ+L ER++ SSD + A VCE CG+LA+S+ WCQ CR SSQ +SSV MPYA KLL+QELM ++I PRL L+    + L
Sbjct:   13 LKNKERLVPAFLSVKGLVKLHIDSFNHFIETEIRNIVQANSRVSVPSANWWLEYNNVYLKPPTVNDGSVVASRVTPHDCRLRDLTYAGEILVDITFTRQ-HEIVSKKGVLIGRMPLMLKSSACVLNGKSAFELMKMKECPLDPGGYFIINGSEKVILMQEQMSKNRIIVEGD--TKKG--------------LICSVTSSSAQTKSKTNILLKDGRLFLQHNSFTVDVPIVILIKAMGITSDKEILRSVGREEAIWAKVVPSLKQCIEAKVHTTLEACKWLQSKLRMPRFRTVRIGPAGGKSGSDITDRDVQADIQRMLRDIIITHIPMEKMNFEDRVLFLGQMIRYLIMLADGKIPPDDRDFYGNKRVELAGSLIALLFEDIFKTFNEDLWLTVSKLDTKRRVAPFDISRHIKTWLITDQLNRAISTGNWVIKRFRMMRQGVTQLVSRLSYVAALGHMTRVTSQFEKTRKIAGPRAIHSSQWGLVCPSDTPEGEACGLVKNVSLMCHITVEV---DDKNLIQLIKSYHVYPLREFSYGANEYIVYVNGKPIGFTEEPEELAAVIRGLRRARYIHEFVSVHCKPVLRCVHVVSDGGRLCRPYIIVSKGK-PLVTQDMLDDLAAKVLSWEDFLKKGVIEYLDSNE-LNDCLIAMDEADITAQTTHMEIDPATILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGTVALNQQIRHVLRFDTLQLQMVYPQRPLVQSKTIQMLHFDQLPAGQNAIVAIMSYSGYDVEDALIVNKASLDRGFARACVYRRIGLHLKMHESGVYDRLMGPVIDRETGKPRREDEVLEADGTAAVGACVQNQRIVINKEMPAVK--VSSAAEANAGQLGLHSATPANAIEFKRCPAEYRGIEPS-YVDKVMFSTSEGNQAVVKVLLRQTRRPEVGDKFSSRHGQKGVVGLIVPQADMPVSPQGICPDIIMNPHGFPSRMTVGKLMELLGSKAAAVDGRLRDGSAFS--GDPVE--SLSEVLAEHGHHYLGKEILISGVTGEPLEAYIYFGPIYYQRLKHMVVDKVHARSRGPVTALTRQPTEGRSREGGLRVGEMERDCFIAYGASQLLLERLLTSSDAYDAVVCEGCGLLASSRSWCQYCRSSSQRISSVCMPYACKLLLQELMCMRILPRLQLAAPSESAL 1150

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BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Match: A0A158RDV5 (DNA-directed RNA polymerase subunit beta OS=Hydatigena taeniaeformis OX=6205 GN=TTAC_LOCUS6137 PE=3 SV=1)

HSP 1 Score: 914.45 bits (2362), Expect = 0.000e+0
Identity = 499/1161 (42.98%), Postives = 716/1161 (61.67%), Query Frame = 1

Query:   82 KHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSKFFVQISNIKVDKPAIFEYQI-KIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTT--SPTSMXXXXRSLLMARQEICRRVL-NHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRC-----------DGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKS-------VTSKCFTDVIKDNEFLAIPVR---KDRRQHAI-DDDGTAAIGSVIRNGDIVISKIVNPVKDPVVA----------ATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYRME-RVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCR-SSQHVSSVVMPYATKLLMQELMTIQITPRLTLS 3450
            K SLV  + +   LV+ H+DSFNHF+E E+  IV+ + RV +PS  ++++ +N+ +  P++ +  I   P+ P  CR+R+ TYA ++  DI +    ++++  +   IGR+PIML+S  C L G S  EL +  EC  D GGYFI  G+E+V LMQEQM+KNR+I++    TKKG              +VC VTS +   K+KT +    G F++Q++ F   +P+ ++  A+ + + ++I   +G E  +   L+ S+++ IE  + +  +A  WL  +++    +  K+ +    ++ +  +R +    Q + R ++  HVP    N   R  +LG M R ++L  +G I  DDRDFYG KR+++ G+ + L+FED F++    L M ++K+    + +  D T++I+  LITE + + I TGNW + RF M R GVTQ+++RLSY+  LGH+ R++S FEK RKI+G RAIH SQ G VC +DTPEGEACGLVKN++ +  +TV +   +   L   ++  Y   L  F +     ++ VNG PIG+T +P  +AA +R  RR+  +H  VSV+ +  +  +H+ SDGGR+ RPYIIV NG    +T+ +  ++ A + +W+D ++ G+IEY+D+ E   +CLVA  E  +T   THL+IDPAT LGVVA LIP+P HNQSPRNTYQCAMGKQA+G IA NQ  R            D  Q ++V PQRPL  S    + ++  LPAGQNAIVAI+ F GYD+EDA+++NKAS++RG  ++       V  K + D   D     +  R   K RR+  I + DGTAA+G+ ++N  I+I+K +  V  P VA          +T  +  ++ K  P  Y G EP+ V + +    G  ++  +V   Q R+PE+GDK SSRHGQKGV+  +V   DMP +  G+ PDIIMNPHGFPSRMTVGKL+ELL +K+A +DG  RD SAFS  G  V       V+  HG    GKE+++SG  G  ME  +Y GP++YQRLKHMV DKVHAR  G    LTRQP  GRS +GGLRVGEMERDC I YGASQ+L ER++ SSD + A VCE CG+LA+S  WCQ CR SSQ +++V MPYA KLL+QELM ++I PRL LS
Sbjct:   17 KESLVPAFLSVKGLVKLHIDSFNHFIETEIRNIVQANSRVSVPSFNWWLEYNNVYIKPPSVNDGSIVASPVTPHDCRLRDLTYAGEILADITFTRQ-HEIVSKKGVFIGRMPIMLKSSSCVLNGKSAFELMKMKECPLDPGGYFIINGSEKVILMQEQMSKNRIIVDGD--TKKG--------------MVCSVTSSSAQTKSKTNILLKDGRFFLQHNSFTTDVPIVILIKAMGITSDREILHYVGCEEAIWTRLVPSLKQCIEAKVHTTLEACKWLQSKLRAPRFRSTKIISIGGKSATDITDRDVQADIQRMLRDIIITHVPMKKMNFQDRVLFLGQMIRYLVLLADGQIPPDDRDFYGNKRIDLAGSLIGLLFEDAFKTFNEDLWMAVSKSDTKRRVSPFDITRHIKTWLITEQLNRAISTGNWVIKRFRMMRQGVTQLVSRLSYVAVLGHMTRVTSLFEKTRKIAGPRAIHSSQWGLVCPSDTPEGEACGLVKNVSLMCHVTVEV---DDTNLIELLQTYYVYTLRDFSYAPDEYIVYVNGKPIGFTKEPNELAAVIRGLRRSRYLHEFVSVHCKPVLRCVHIVSDGGRLCRPYIIVSNGK-PLVTQGMLDDLAAKVLNWEDFLKKGVIEYLDSNE-LNDCLVALYENDITSNTTHLEIDPATILGVVAGLIPYPDHNQSPRNTYQCAMGKQAMGTIALNQQIRAVTRRLDANCRFDTLQLQMVYPQRPLVQSKTIQMLHFDQLPAGQNAIVAIMSFTGYDVEDALIVNKASIDRGFARACVYRRVGVHMKVYGDATYDRLMGPVIDRETGKPRREDEILEADGTAAVGAKVQNQRILINKEMPVVSIPSVASENAGSLSIHSTTPANAIEFKRVPADYRGIEPSYVDKVMFAAAGDGQVAVKVLLRQTRRPEMGDKFSSRHGQKGVVGLIVPQADMPVSSQGICPDIIMNPHGFPSRMTVGKLMELLGSKAAAIDGRLRDGSAFS--GDPVES--LGEVLIEHGHHYLGKEILISGVTGEPMEAYIYFGPIYYQRLKHMVMDKVHARSRGPVTALTRQPTEGRSREGGLRVGEMERDCFIAYGASQLLVERLLTSSDAYDAVVCEACGLLASSPNWCQYCRSSSQRIATVRMPYACKLLLQELMCMRILPRLQLS 1151

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BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Match: A0A267GW75 (DNA-directed RNA polymerase subunit beta (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig008433g1 PE=3 SV=1)

HSP 1 Score: 911.753 bits (2355), Expect = 0.000e+0
Identity = 512/1150 (44.52%), Postives = 710/1150 (61.74%), Query Frame = 1

Query:   73 MDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSS-KFFVQISNIKVDKPAIFEYQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRR-----VLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFK-------SVTSKCFTDVIKDNEFLAIPVRK-----DRRQHAI-DDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKV---MDPKPAPTCYSGSEPTIVVEKI---TTFDGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTL 3447
            ++ K  LV  +     LV+ H++SFNHFV  E+  I+  + RV   +  +++++  NI V +P++ E  I   + P +CR+R+ TYAA + VDI Y   G++ +  ++  IG IPIMLRS  C L G +  ELTR  EC  D GGYFI +GTE+V L+QEQ++KNR+I+E      KG              I+C VTS T   K+KT +    G F+V+++ F E +P  V+  A+ M   ++I ++IG E E+ + L+  +E+  +L +F+Q QAL WL  +I+VA       T  P      ER     R + CR+     VL HVP    N   +  YL LM R+++LA+ GLI  DDRD+YG KRLE+ G+ LAL+FED F+     L+    + +  N+A   D  ++IRQ LIT G+   I +GNW++ RF M R GVTQVL RLSY+  LGH+ RI+SQFEK RK+SG R++  SQ G +C +DTPEGE+CGLVKNLA +  +T+++  ++   L + +      DLG     S      + G+ +G   Q   +   LR  RRAG +H  VSV+     + +HV SDGGR+ RPYIIV   G   + R    E+ +GLRDW+D +  G+IEY+D  E   +C +A     +T+  THL+I+P T LGV A +IP+PHHNQSPRNTYQCAMGKQA+G +A NQ++R D  Q+ LV PQRPL  +    L  Y  LPAGQNA VA++ + GYDIEDA+V+NKASL+RG  +       SV  K + D  +  + L  P+        RR H + + DG A +G+ + +  ++++K +     P+V+AT ++ V   ++ K  P  Y G EP   VEK+    T D H  + +++  Q R+PE+GDK SSRHGQKGV   +V   DMP++ DG+VPDIIMNPHG+PSRMTVGKL+ELL +K+AV+DG ++D +AF   G +       +++R HGF+  GK+V+ SG  G  ME  VY+GP++YQ+LKHMV DK+HAR  G    +TRQP  GR+ DGGLR+GEMERDCLIGYGAS +L ER+MLSSD F   VC  CG+L   + WCQ CRSS  V SV MPYA KLL QEL ++ I PRLTL
Sbjct:   19 LEDKWKLVPAFLKVRGLVKQHIESFNHFVNTEVRAIMLANQRVVCDADQRWYLEYKNIYVGRPSVEEGPIVKEISPHECRLRDLTYAAPLLVDIAYIR-GDQRVNMDRVPIGSIPIMLRSSNCLLTGKTPNELTRLRECPLDPGGYFIIRGTEKVILLQEQLSKNRIIVED---DNKG-------------HIMCSVTSSTHQRKSKTGLVAKKGIFHVEHNSFGELVPAVVVLKAMGMICDQEIVQTIGTEDEVLSALLPCLEQCHKLKLFTQNQALAWLSNKIRVAK------TYGPAWKASRERKDAEGRIDDCRQTLKDIVLAHVPVEHWNFHQKCVYLCLMLRKLILAQAGLIPPDDRDYYGNKRLELAGSLLALLFEDHFKKFNDNLRFVANEMLPKNQATAFDIHKHIRQDLITNGLVAAISSGNWNIKRFRMERQGVTQVLTRLSYISALGHMTRINSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALMSHVTMDV--DDAPLLRLIL------DLGVEPVDS------LRGLLVGSCRQWPRLVRHLRRLRRAGRLHQFVSVHSHAAHKAVHVASDGGRLCRPYIIV-EAGRPLVARRHLDELASGLRDWEDFLHEGLIEYLDVNE-ENDCRIAVYVKDITDDTTHLEIEPFTLLGVCAGIIPYPHHNQSPRNTYQCAMGKQAMGTLAYNQNERFDTVQYLLVYPQRPLVQTKPLELIGYHELPAGQNACVAVMSYSGYDIEDALVVNKASLDRGFGRCFYYRRQSVQMKRYADANQSTDRLMGPMVDINTGLPRRGHEVLEADGVAYVGARVSDRQVLVNKEM-----PIVSATMSAAVNSNVEYKSVPQDYKGMEPA-YVEKVMVANTEDNH-GLVKLQLRQTRRPEIGDKFSSRHGQKGVCGLIVDQADMPFSRDGVVPDIIMNPHGYPSRMTVGKLLELLGSKAAVLDGAFKDGTAFGGDGAE----QLGAILREHGFNSLGKDVLTSGVTGETMEAYVYSGPIYYQKLKHMVLDKIHARARGPCTLITRQPTEGRARDGGLRLGEMERDCLIGYGASMLLVERLMLSSDAFDTKVCSACGLLC-GRAWCQYCRSSTAVCSVRMPYACKLLFQELQSMNIAPRLTL 1117

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Cavefish
Match: polr3b (RNA polymerase III subunit B [Source:NCBI gene;Acc:103044942])

HSP 1 Score: 843.188 bits (2177), Expect = 0.000e+0
Identity = 478/1148 (41.64%), Postives = 691/1148 (60.19%), Query Frame = 1

Query:   73 MDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSK-FFVQISNIKVDKPAIFE-YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAK--YLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDD---LGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSV---TSKCFTDVIKDNEF-------LAIPVRKDRRQHAI-DDDGTAAIGSVIRNGDIVISKIVNPV-KDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYR-MERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRH 3456
            ++ K  L+  +     LV+ H+DSFN+F+ VE+ KI+K + +V   +   ++++  NI V  P + E + +  P+ P +CR+R+ TY+A +TVDI+Y     ++I+N    IGR+PIMLRS  C L G +  E ++ NEC  D GGYFI KG E+V L+QEQ++KNR+I+E+    +KG +                VTS T   K++T +    G FY++++   E  P+ ++F A+ + + ++I + IG E  +      S+EE  +  IF+Q QAL ++  +++       +M   P   + EE     AR+ +   +L HVP  V   ++RAK  YL +M RR++LA+ G    DDRD+YG KRLE+ G  L+L+FED F+   S L+    + I   +A Q D  +++RQ  IT GM   I TGNW L RF M R GVTQVL+RLS++  LG + RISSQFEK RK+SG R++  SQ G +C +DTPEGEACGLVKNLA +  IT ++  E+   +++       D     G       + L+ +NG  +G       + +  R  RRAG I+  VS+        +++ SDGGR+ RPYIIV NG  +   + + +E+  G R+++D +   ++EY+D  E   +C +A  E  +T+  THL+I+P T LGV A LIP+PHHNQSPRNTYQCAMGKQA+G I  NQ  R D   + L  PQRP+  +    L +++ LPAGQNA VA++ + GYDIEDA+V+NKASL+RG  + +    +KC      +  F       L    RK   +H+I D DG  + G  + N  ++++K +  V + P+  +T+  +    +  P  Y GS  + + + + + +     + ++   Q R+PE+GDK SSRHGQKGV   +V  +DMP+ + G+ PDIIMNPHG+PSRMTVGKLIELLA K+ V+DG +   +AF   G KV   D    +  +G++  GK+ + SG  G  +E  +Y GPV+YQ+LKHMV DK+HAR  G    LTRQP  GRS DGGLR+GEMERDCLIGYGAS +L ER+M+SSD F   VC +CG+L  S  WC  C+SS HVSS+ +PYA KLL QEL ++ I PRL LSR+
Sbjct:   23 VEEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRN-ALPIGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVEQ---DRKGAVGA-------------SVTSSTHEKKSRTNMIVKQGRFYLKHNTLSEDAPIAIIFKAMGVESDQEIVQMIGTEEHVMAAFAPSLEECQKAQIFTQTQALKYIGNKVR-----RQRMWGGPKKTKMEE-----ARELLASTILTHVP--VKEFNFRAKCIYLAVMVRRVILAQ-GNNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDM--EDGPIIKLAFNLGVEDVNLLCGEELSYPTVFLVFLNGNILGVIRNHQKLVSTFRLMRRAGFINEFVSISTNVTDRCVYISSDGGRLCRPYIIVKNGQPAVKNKHI-EELSQGYRNFEDFLHESLVEYLDVNEE-NDCSIALYEHMITKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMGPMLDAETRKPIWRHSILDADGICSPGERVENKQVLVNKSMPTVTQTPLEGSTQPGQP-QYRDVPITYKGSTDSYIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAF--GGSKVK--DVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSG-WCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSRY 1130

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Cavefish
Match: polr3b (RNA polymerase III subunit B [Source:NCBI gene;Acc:103044942])

HSP 1 Score: 840.877 bits (2171), Expect = 0.000e+0
Identity = 477/1139 (41.88%), Postives = 687/1139 (60.32%), Query Frame = 1

Query:  100 LYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSK-FFVQISNIKVDKPAIFE-YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAK--YLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDD---LGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSV---TSKCFTDVIKDNEF-------LAIPVRKDRRQHAI-DDDGTAAIGSVIRNGDIVISKIVNPV-KDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYR-MERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRH 3456
            L+     LV+ H+DSFN+F+ VE+ KI+K + +V   +   ++++  NI V  P + E + +  P+ P +CR+R+ TY+A +TVDI+Y     ++I+N    IGR+PIMLRS  C L G +  E ++ NEC  D GGYFI KG E+V L+QEQ++KNR+I+E+    +KG +                VTS T   K++T +    G FY++++   E  P+ ++F A+ + + ++I + IG E  +      S+EE  +  IF+Q QAL ++  +++       +M   P   + EE     AR+ +   +L HVP  V   ++RAK  YL +M RR++LA+ G    DDRD+YG KRLE+ G  L+L+FED F+   S L+    + I   +A Q D  +++RQ  IT GM   I TGNW L RF M R GVTQVL+RLS++  LG + RISSQFEK RK+SG R++  SQ G +C +DTPEGEACGLVKNLA +  IT ++  E+   +++       D     G       + L+ +NG  +G       + +  R  RRAG I+  VS+        +++ SDGGR+ RPYIIV NG  +   + + +E+  G R+++D +   ++EY+D  E   +C +A  E  +T+  THL+I+P T LGV A LIP+PHHNQSPRNTYQCAMGKQA+G I  NQ  R D   + L  PQRP+  +    L +++ LPAGQNA VA++ + GYDIEDA+V+NKASL+RG  + +    +KC      +  F       L    RK   +H+I D DG  + G  + N  ++++K +  V + P+  +T+  +    +  P  Y GS  + + + + + +     + ++   Q R+PE+GDK SSRHGQKGV   +V  +DMP+ + G+ PDIIMNPHG+PSRMTVGKLIELLA K+ V+DG +   +AF   G KV   D    +  +G++  GK+ + SG  G  +E  +Y GPV+YQ+LKHMV DK+HAR  G    LTRQP  GRS DGGLR+GEMERDCLIGYGAS +L ER+M+SSD F   VC +CG+L  S  WC  C+SS HVSS+ +PYA KLL QEL ++ I PRL LSR+
Sbjct:   38 LFLQVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRN-ALPIGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVEQ---DRKGAVGA-------------SVTSSTHEKKSRTNMIVKQGRFYLKHNTLSEDAPIAIIFKAMGVESDQEIVQMIGTEEHVMAAFAPSLEECQKAQIFTQTQALKYIGNKVR-----RQRMWGGPKKTKMEE-----ARELLASTILTHVP--VKEFNFRAKCIYLAVMVRRVILAQ-GNNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDM--EDGPIIKLAFNLGVEDVNLLCGEELSYPTVFLVFLNGNILGVIRNHQKLVSTFRLMRRAGFINEFVSISTNVTDRCVYISSDGGRLCRPYIIVKNGQPAVKNKHI-EELSQGYRNFEDFLHESLVEYLDVNEE-NDCSIALYEHMITKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMGPMLDAETRKPIWRHSILDADGICSPGERVENKQVLVNKSMPTVTQTPLEGSTQPGQP-QYRDVPITYKGSTDSYIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAF--GGSKVK--DVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSG-WCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSRY 1136

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Cavefish
Match: POLR2B (RNA polymerase II subunit B [Source:HGNC Symbol;Acc:HGNC:9188])

HSP 1 Score: 598.971 bits (1543), Expect = 0.000e+0
Identity = 392/1103 (35.54%), Postives = 587/1103 (53.22%), Query Frame = 1

Query:  289 LYPQQCRVRNFTYAADVTVDIQY----PGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMII-----EKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRN--SGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNW-HLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVN---------LPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXX-XXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQ--EILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQ-------HTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDV-----IKDNEFLAIPVRKDRR--QHAI----DDDGTAAIGSVIRNGDIVISKIVN-PVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGH-YRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLA-----TSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLS 3450
            + P + R+RN TY+A + VDI       G      +++K  IG+IPIMLRS  C L GL++ +L   NEC  D GGYFI  G+E+V + QE+MA N + +      K+  T +    +  S + P   I   + +       K+ + +   S   Y++     + +P+ ++F AL   + +DI E I  + +   E++  V+ S++     Q Q          VA+N        P     +ER +  A++ + + VL HV  S    + +A +LG M  R+LLA  G    DDRD YG KRL++ G  LA +F   F++L+  +++ L                 I+  +I++G+   + TGNW  + +   AR+GV+QVLNRL++  TL HL R++S   +  K++  R +H +  G VC A+TPEG A GLVKNLA +  I+V          L     E LE     + +D    F          VNG  +G    P  +   LR+ RR+  +I   VS+  + +   + + +D GR+ RP +IV    +    R + Q  E       W DLV SG++EYID LE     ++A     L E+       +TH +I P+  LGV AS+IPFP HNQSPRNTYQ AMGKQA+GV  TN   R D   H L  PQ+PL  +       ++ LPAG N+IVAI  + GY+ ED++++N+++++RG F+SV  + + +          E    P R++ +  +HAI    DDDG  A G  +   D++I K V  P  D  + +T  ++    +   T    SE  IV + + T +   Y+  +++   +R P++GDK +SRHGQKG        +DMP+T +G+ PDII+NPH  PSRMTVG LIE L  K +   G   D++ F++A   VN     +++  +G+ + G EV+ +G  G  +   ++ GP +YQRLKHMV DK+H+R  G  Q L RQP  GRS DGGLR GEMERDC I +GA+Q L+ER+  +SDP++  VC  CG++A     T    C+ CR+   +S V +PYA KLL QELM++ I PR+  S
Sbjct:    1 MMPNEARLRNLTYSAPLYVDITKTIIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSR-PTSSIWVSMMARGGQGVKKSAIGQRIVSTLPYIR-----QEVPIIIVFRALGFVSDRDILEHIIYDFD-DPEMMEMVKPSLDEAFVIQEQ---------NVALNFIGSRGAKPG--VTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYLA----------------IKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIF----------VNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEE-ETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPKREECQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDST--NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDA---VNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRLPYACKLLFQELMSMSIAPRMMTS 1053

[Close]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Cavefish
Match: polr1b (RNA polymerase I subunit B [Source:NCBI gene;Acc:103036003])

HSP 1 Score: 383.645 bits (984), Expect = 2.697e-114
Identity = 328/1167 (28.11%), Postives = 518/1167 (44.39%), Query Frame = 1

Query:  121 LVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSKFFVQISNIK-------VDKPAIFEYQI--KIPLYPQQCRVRNFTYAADVTVDIQYP--GPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMII---EKFKITKKG----GIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIEL----GIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKT------INANKANQL-----DPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRI--SSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDDLGTFRHQ--SGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDVI--------KDNEFLAIPVRKDRRQHAIDDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLAT------SKEW---------CQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRL 3441
            LV+ H+DSF+  +   + ++V+      IP  +F  +   I        V  P + +  I   + ++P +CR R  TY   +  D+ +   G    +IK     +G++PIM++SK+CNL+GLS +EL   +E   + GGYFI  G E+V  M     +N  I     KFK   +G    GI V     + DE    ++  + + N T   +  N   F     LF   +PL     AL   +   I++ +    E ++     V E + L    G  ++ + L +L  R +V ++     T    +    +  L +  +    +  N               L LMTR++          ++ D    + +   G    +  ++K    + ++++ L K       I A    ++     D T+     L T  +      G        +  SG+  V ++L+++  L H   +   + F K+R  +  R +     GF+C   TP+G  CGL+ ++    EI    P      L   +       + +   Q  S    ++++G  IGW  + +A +     RR   L    +  + E  +    V   G   + P + +      ++ R V    L            G  E I   E     +  FE+       TH ++ P + L VVAS IPF  HNQSPRN YQC MGKQ +G    +   R D   +RL  PQ PL    +    N    P G NA+VA++ + GYD+EDA+++NK+S ERG       K  T+VI        +D+          +    +D DG  AIG+V+  GD        P    V   T  S V   K   TC   +   I V    T  G ++   +     R P +GDK +SRHGQKG++SR+   +DMP+TE G+ PDI+ NPHGFPSRMT+G LIE +A KSA + G   D++ F+ +        +  +++A G++  G E + SG +G  +E D++ G V+YQRL+HMV DK   R  G   ++T QP  GR+  GG+R GEMERD L+ +G+S +L +R+   SD   A VC  CG L +         W         C +C+ S  + +V +PY  +  + EL  + I  +L
Sbjct:   38 LVKAHIDSFDQALSDGLAQVVQA-----IPPMEFMHKGDRISLAFVEATVHNPTVAKGGICKDLRVFPAECRGRRCTYRGKLVADVSWSVNGVPKGIIKQS---LGQVPIMVKSKLCNLHGLSPKELIEHHEEAEEMGGYFIVNGIEKVIRMLIMPRRNFPIALSRPKFKSRGQGYTQYGIAV---HCVKDEHTAINMNLHYLDNGT---IMLN---FIYHKELFF--LPLGFALKALVDFSDYQIYQELIKGKEENSFYKSCVSEMLRLVMEEGCTTRAKVLNYLGERFRVKLHLPEWYTNEQCAKFLLDECLCIHLKSDSEKFYN---------------LCLMTRKLFAFAKQECQEENPDSLMCQEVLTPGQLFLMFLKEKMTGWLVSVKLALDKRSQRVAGITAENLTRIFNLGTDITRAFEYMLATGNIISKTGLG-------MLQDSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTT-VRKLLPESWGFLCPVHTPDGTPCGLMNHMTTHCEIVA--PTSSTSTLPALLCSLGVTPVESTPSQPYSCCYPVVLDGAMIGWVEKDLAPSLVESLRRFKVLKEKRMPPWTEIVL----VPQTGKASLYPGLFLFTTPC-RMMRPVRNLAL------------GKQELIGTFEQLYLNVGIFEDEIEEGVTTHQELFPHSMLSVVASFIPFSDHNQSPRNMYQCQMGKQTMGFPLHSYQDRSDNKLYRLQTPQSPLVRPVMYDHYNIDNYPIGTNAVVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYK--TEVIDLSEKAKGEDSVVFGTKPGDPKVGTKLDVDGLPAIGTVLNYGD--------PYYSYVNLNTGQSHVSFYKSQETCVVDN---IKVCSNDTGTGRFKRVCITMRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALEHFGDMLKAAGYNYYGTERLYSGLSGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNVQGGIRFGEMERDALLAHGSSFLLHDRLFNCSDRSVAQVCMDCGSLLSPLLEKPPPHWSTTRHRNTICMLCKKSDSIENVSVPYVFRYFVAELAAMNIKIKL 1130

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Sea Lamprey
Match: ENSPMAT00000001310.1 (pep scaffold:Pmarinus_7.0:GL477974:3852:23589:-1 gene:ENSPMAG00000001164.1 transcript:ENSPMAT00000001310.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 526.939 bits (1356), Expect = 3.177e-171
Identity = 325/858 (37.88%), Postives = 471/858 (54.90%), Query Frame = 1

Query: 1003 ARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNW-HLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVN---------LPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXX-XXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRD-------WDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQ-------HTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDVIKDNEF-----LAIPVRKDRR--QHAI----DDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGH-YRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLA-----TSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLS 3450
            A++ + + VL HV  S    + +A +LG M  R+LLA  G    DDRD YG KRL++ G  LA +F   F++L+  ++M   K I+  K   L+    I+  ++T+G+   + TGNW    +   AR+GV+QVLNRL++  TL HL R++S   +  K++  R +H +  G VC A+TPEG A GLVKNLA +  I+V          L     E LE     + +D    F          VNG  +G    P  +   LR+ RR+  +I   VS+  + +   + + +D GR+ RP +IV    +    R + Q     L+D       W DLV SG++EYID LE     ++A     L E+       +TH +I P+  LGV AS+IPFP HNQSPRNTYQ AMGKQA+GV  TN   R D   H L  PQ+PL  +       ++ LPAG N+IVAI  + GY+ ED++++N+++++RG F+SV  + + +      F        P R   +  +HAI    DDDG  + G  +   D++I K V  + D        +K    +   T    SE  IV + + T +   Y+  +++   +R P++GDK +SRHGQKG        +DMP+T +GL PDII+NPH  PSRMTVG LIE L  K +   G   D++ F++    VN     +++  +G+ + G EV+ +G  G  M   ++ GP +YQRLKHMV DK+H+R  G  Q L RQP  GRS DGGLR GEMERDC I +GA+Q L+ER+   SDP++  VC  CG++A     T    C+ CR+   +S V +PYA KLL QELM++ I PR+ ++
Sbjct:   40 AKEILQKEVLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRREVDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRMYAQKFIDRGKDFNLELA--IKTRIVTDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIF----------VNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMVRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQ-----LKDREYNNYTWQDLVASGVVEYIDTLEE-ETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDMEEVFERPTRDTCQGMRHAIYEKLDDDGLISPGIRVSGDDVIIGKTVT-LPDNEDELEGQTKRFTKRDCSTFLRTSETGIVDQVMVTINQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLSPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDT---VNVQKISNLLHEYGYHLRGNEVLYNGFTGRKMTSQIFMGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRVPYACKLLFQELMSMSIAPRMMIT 875

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008572.1 (pep scaffold:Pmarinus_7.0:GL476831:175452:211422:1 gene:ENSPMAG00000007718.1 transcript:ENSPMAT00000008572.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 535.798 bits (1379), Expect = 3.246e-171
Identity = 391/1196 (32.69%), Postives = 608/1196 (50.84%), Query Frame = 1

Query:   91 LVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVK-------------THGRVDIPSSKFFVQISNIKVDKPAIFEYQ-IKIPLYPQQCRVRNFTYAA----DVTVDIQYPGPG-----NKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMII-----EKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSL--FHESIPLFVMFAALNMPAHKDIFESI-------------GLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNW-HLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITV-NLPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXX-XXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQ--EILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQ-------HTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTD-----VIKDNEFLAIPVR---KDRRQHAI----DDDGTAAIGSVIRNGDIVISKIVN-PVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTF--DGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMC----RSSQHV--SSVVMPYATKLLMQELMTIQITPRLTLS 3450
            ++  Y +   LVR  LDSF+ F+++ + +IV+               G+++ P  ++ V+   I + KP  +E      P+ P + R+RN TY+A    D+T  +   G G      +L  +EK  IG+IPIMLRS  C L GL++ +L   NEC  D GGYF+  G+E+V + QE+MA N + +      +F  + +    +  S +          T + ++ +    V +++    +  +L    + +P+ V+F  L   + +DI E I              L+  L    +   E+S+ L     R A        K  + KE ++                AR  + + +L HV  S    + +A +LG M  R+LLA  G    DDRD YG KRL++ G  LA +F   F++L   +++   K I+  K   L+    I+  +IT+G+   + TGNW    +   AR+GV+QVLNRL+Y  TL HL R++S  ++  K++  R +H +  G +C A+TPEG A GLVKNLA +  I+V + P+   E LE +   +  +   +    +    I VNG  +G    P  +   LR+ RR+  +I   VS+  + +   + + +D GR+ RP +IV    +    R + Q  E       W +LV SG++EYID LE  +  ++A     L E+       +TH ++ PA  LGV AS+IPFP HNQSPRNTYQ AMGKQA+GV  TN   R D   H L  PQ+PL  +       ++ LPAG N+IVAI  + GY+ ED+I++N++++ERG F+SV  + +TD          E    P R   ++  +HAI    DDDG  + G  +   D++I K  + PV D  + +     V   +   T    SE  IV + + T   DG Y+  +++   +R P++GDK +SRHGQKG        +DMP+T +GL PDII+NPH  PSRMT+G +IE +  K +   G   D++ F++    VN     ++++ +G+ + G EV+ +G  G  +   ++ GP +YQRLKHMV DK+H+R  G  Q L RQP  GRS    L    +E   +   G S  L+  +  +  P    V  +    A ++    +     R S HV  S V +PYA KLL QEL+++ I PR+ ++
Sbjct:   26 VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEAQHASGQIETPP-RYSVRFEQIYLSKPTHWERDGAPAPMMPNEARLRNLTYSAPLYVDITKSVTTAGGGEEQQQQRLQTHEKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFVINGSEKVLIAQEKMATNSVYVFAKKESRFAFSAECRSCLENSSRPVS-------TIWVMLARGGQGVRKSTIGQRIVGTLPYIRQEVPIMVVFRGLGFVSDRDILEHIIYDFDDPEMMEMQKLKPSLDEAFVIQ-EQSVALNFIGSRGA--------KPGVTKEKRIK--------------YARDILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFLGLFKTLGKEVRIYAQKFIDRGKDFNLELA--IKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTYASTLSHLRRLNSPCDRGSKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPS--AIADATKIFVNGCWVGIHKDPEQLMTTLRKLRRQMDIIVSEVSMVRDIREREIRIHTDAGRICRPLLIVEKQRLLLKRRHIEQLKEREYNGYSWQELVASGVVEYIDTLEEES-AMIAMSPDDLQERGVAYCCTYTHCEVHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSIIMNRSAVERGYFRSVFYRSYTDQESKRSYDQEEVFEKPTRETCQEGMRHAIYDKLDDDGLVSPGVRVSGDDVIIGKTASLPVTDDELDSVATRFVK--RDTSTFLRSSETGIVDQVMVTLNQDG-YKFTKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLSPDIIINPHAIPSRMTIGHMIECIQGKVSANKGEIGDATPFNDT---VNVQKVSNLLQEYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRSRCVPLGATSIELAPVPTAGPS-TLRRDIAQNVIPSNVSVTRQSSPRARARRVSPLIPLPPRGSPHVQMSLVRLPYACKLLFQELLSMSIAPRMMVT 1178

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Sea Lamprey
Match: ENSPMAT00000009064.1 (pep scaffold:Pmarinus_7.0:GL481227:16752:24008:-1 gene:ENSPMAG00000008197.1 transcript:ENSPMAT00000009064.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 444.891 bits (1143), Expect = 3.732e-145
Identity = 229/484 (47.31%), Postives = 308/484 (63.64%), Query Frame = 1

Query: 2047 THLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSV---TSKCFTDVIKDNEF-------LAIPVRKDRRQHAI-DDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEK--ITTFDGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRHE 3459
            THL+I+P T LGV A L+P+PHHNQSPRNTYQCAMGKQA+G I  NQ  R D   + L  PQRP+  +    L  +  LPAGQNA +A++ + GYDIEDA+V+NKASL+RG  + +    +KC      +  F       L    RK   +H + D DG  + G  + N  ++++K +  +    +    A   +  K  P  Y GS  +  VEK  I++ +    + ++   Q R+PE+GDK SSRHGQKGV   + + +D+P+ + G+ PDIIMNPHGFPSRMTVGKL+ELLA K+ V+DG +   +AF   G +V   D    +  HG++  GK+ + SG  G  +E  +Y GPV+YQ+LKHMV DK+HAR  G    LTRQP  GRS DGGLR+GEMERDCLIGYGAS +L ER+M+SSD F+  VC  CG++A S  WC  CRSS+ VSS+ +PYA KLL QEL ++ I PRL L+++ 
Sbjct:    4 THLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVQTRTIELIQFDKLPAGQNATLAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDRVMGPMLDAATRKPIWRHKVLDSDGICSPGERVENKQVLVNKSMPSMTQTPIQGASAPTQVQYKDVPITYKGSTDS-YVEKVMISSNNEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIASQEDVPFCDSGICPDIIMNPHGFPSRMTVGKLMELLAGKAGVLDGRFHYGTAF--GGSRVR--DVCEDLIRHGYNYQGKDFVTSGITGEPLEAYIYIGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDSFQVDVCGTCGLMAYSGWWCHYCRSSRQVSSLRIPYACKLLFQELQSMNIIPRLKLAKYN 482

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002293.1 (pep scaffold:Pmarinus_7.0:GL487410:805:8051:1 gene:ENSPMAG00000002089.1 transcript:ENSPMAT00000002293.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 150.214 bits (378), Expect = 6.255e-41
Identity = 81/235 (34.47%), Postives = 137/235 (58.30%), Query Frame = 1

Query:   73 MDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSK-FFVQISNIKVDKPAIFE-YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMF 771
            ++ K  L+  +     LV+ H+DSFN+F+ VE+ KI+  + ++   +   ++++  NI V  P + E + +  P+ P +CR+R+ TY+A +TVDI+Y     ++I+N    IGR+PIMLRS  C L G +  E+ + NEC  D GGYF+ +G E+V L+QEQ++KNR+I++   I +KG +                VTS T   K++T +    G FY++++   E IP+ ++ 
Sbjct:   23 IEDKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMMANEKITSDADPMWYLKYLNIYVGTPDVEESFNVTRPVAPHECRLRDMTYSAPITVDIEYTRGNQRIIRN-ALPIGRMPIMLRSSNCVLTGKTPAEMAKLNECPLDPGGYFVVRGVEKVCLIQEQLSKNRIIVD---IDRKGNVG-------------ASVTSSTHEKKSRTNLVMKQGRFYMKHNTLAEDIPVAIIL 240

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Yeast
Match: RET1 (Second-largest subunit of RNA polymerase III; RNA polymerase III is responsible for the transcription of tRNA and 5S RNA genes, and other low molecular weight RNAs [Source:SGD;Acc:S000005733])

HSP 1 Score: 795.038 bits (2052), Expect = 0.000e+0
Identity = 452/1143 (39.55%), Postives = 677/1143 (59.23%), Query Frame = 1

Query:   82 KHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRV--DIPSSKFFVQISNIKVDKPAIFEYQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESI-GLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINA-NKANQLDPTQYIR--QSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNL---IMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVH-QEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDVIK----DNEFLAIPVRKDRR-----QH-AIDDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTF-DGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTL 3447
            K  L+  +     LV+ HLDSFN+FV+ ++ KI+K +  +  D+   +F+++  +I+V K +    +  +   P +CR+R+ TY+A + VDI+Y   G  +I ++   IGR+PIMLRS  C LY     ++ + NEC  D GGYFI  GTE+V L+QEQ++KNR+I+E     +K GI            +   VTS T   K+KT V   +G  Y++++   E IP+ ++  A  + +  +I + + G +S   +    ++EES +L I++Q+QAL ++  ++K    +  K+T            L    + I   V+ H+     +   +A Y+ +MTRR+++A       DDRD+ G KRLE+ G  ++L+FED F+   +  ++ + K +   N+A + D    I    + IT G+ + I TGNW L RF M R+GVT VL+RLSY+  LG + RISSQFEK RK+SG RA+  SQ G +C ADTPEGEACGLVKNLA +  IT +   +E+E ++        +D+ T    + ++L   + +NG  IG    P       R  RR G +   +S+Y  +    +H+ +DGGR+ RP IIV +G      + +H +++L G  D+DD ++ G++EY+D  E   +  +A  E  +    THL+I+P T LG VA LIP+PHHNQSPRNTYQCAMGKQA+G IA NQ KR D   + +  PQ+P+  +    L +Y  LPAGQNA VA++ + GYDIEDA+V+NK+S++RG  +  T +  T V+K      + +   +R D       QH ++  DG   +G  +++G I I+K V             +     + AP  Y G EP+ + + + +  D    + +V   Q R+PE+GDK SSRHGQKGV   +V  +DMP+ + G+VPDIIMNPHGFPSRMTVGK+IEL++ K+ V++G     + F   G K+   D   ++   GF+ SGK+++ SG  G  ++  ++ GP++YQ+LKHMV DK+HAR  G    LTRQP  GRS DGGLR+GEMERDC+I YGASQ+L ER+M+SSD F   VC+KCG++  S  WC  C+S++++  + +PYA KLL QEL+++ I PRL L
Sbjct:   44 KWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDV-DPEFYLKYVDIRVGKKSSSSTKDYLTP-PHECRLRDMTYSAPIYVDIEYT-RGRNIIMHKDVEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEA---DEKKGI------------VQASVTSSTHERKSKTYVITKNGKIYLKHNSIAEEIPIAIVLKACGILSDLEIMQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKVKTM--RRQKLTI-----------LQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTD---DEEEPIKKLCYVLGVEDI-TLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGGRICRPLIIVSDG--QSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEE-NDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCF--GGSKLE--DMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSG-WCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRL 1143

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Yeast
Match: RPB2 (RNA polymerase II second largest subunit B150; part of central core; similar to bacterial beta subunit [Source:SGD;Acc:S000005677])

HSP 1 Score: 617.846 bits (1592), Expect = 0.000e+0
Identity = 415/1233 (33.66%), Postives = 620/1233 (50.28%), Query Frame = 1

Query:   67 IIMDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRV------------DIPSSKFFVQISNIKVDKPAIFEYQ-IKIPLYPQQCRVRNFTYAADVTVDIQ---YPG---PGNKL----IKNE--------KFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSL--FHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELG-IFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMA-RSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVN---------LPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGN-------------GGVSKLTRAVHQEILAGLRD-----WDDLVRSGIIEYIDALEGYAECLVA-----FEECQLTEQH-------------------THLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDVIKD-----NEFLAIPVRKD--RRQHA----IDDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEK-ITTFDGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEW------CQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSR 3453
            I  +   +++  +     LV   LDSFN FV+  +  I+     +            D  S K+ +    I V KP + E   +   LYPQ+ R+RN TY++ + VD++   Y     PG +L    I  E        K  IGR+PIMLRSK C L   +  +L +  EC +D GGYFI  G+E+V + QE+ A N  I++ FK         P+S        +   + +    + K      S    ++ +L    + IP+ ++F AL +    +I E I  +     +++  ++  +E G +   R+  +  I R   A+  + +            + +  A+  + +  L H+    G  S +A +LG M  R+LL        DDRD +G KRL++ G  LA +F+  F+ L   +   + +T+   +A+  +    I    IT G+   + TGNW   + +M+ R+GV+QVLNR +Y  TL HL R ++   +  K++  R +H +  G VC A+TPEG+ACGLVKNL+ +  I+V          L     E LE ++     D    F          VNGV  G    P  +   LR  RR G I+P VS+  + + + L + +D GR+ RP  IV +             G ++KL    +Q+I  G  D     W  L+  G++EYIDA E     L+A      E  +  E++                   TH +I P+  LGV AS+IPFP HNQSPRNTYQ AMGKQA+GV  TN + R D   + L  PQ+PL  +       ++ LPAGQNAIVAI C+ GY+ ED++++N++S++RGLF+S+  + + D  K       E    P R +  R +H     +DDDG  A G  +   D++I K   P+        + +     + A T    +E  IV +  +TT     +  +V+    + P++GDK +SRHGQKG I      +DMP+T +G+VPD+I+NPH  PSRMTV  LIE L +K A + GN  D+S F++    +       ++R HG+   G EVM +G  G  +   ++ GP +YQRL+HMV DK+HAR  G  Q LTRQP  GRS DGGLR GEMERDC+I +GA+  LKER+M +SD FR  +C  CG++    +       C+ C +   +  + +PYA KLL QELM + ITPRL   R
Sbjct:   25 ITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGN--IVQVFKKAAPS----PISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVN-DWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKE------------KRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVE--EAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVF----------VNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDA-EEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGK-TTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTD----ITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTDR 1220

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Yeast
Match: RPA135 (RNA polymerase I second largest subunit A135 [Source:SGD;Acc:S000006214])

HSP 1 Score: 339.732 bits (870), Expect = 5.514e-99
Identity = 301/1094 (27.51%), Postives = 484/1094 (44.24%), Query Frame = 1

Query:  214 SKFFVQISNIKVDKPAIFE---YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNR-MIIEKFKITKKGG----IKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQR--------QALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRR-VLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSL------ITEGMFQCIFTGNWHLMRFS----MARSGVTQVLNRLSYLGTLGHLGRI-SSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDDLG----TFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGN-------GGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDVIKDNEFLAIPVRK----------DRRQHAIDDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYRMERVKTSQM-----RQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKE 3333
            +K  V +  + + KP   +     ++  +YP + R R  +Y   + + +++     +    E    G +P+ML+S  C+L  +S  EL +  E   + GGYFI  G E++  M     +N  M I +     +G       + +    PD+    +V  Y  +N  + T FR S   + +N      +P+ ++  AL   + ++IF+ I + +++ +  +    E +  G F +R        Q L +L  + +V          SP       +S L   QE+  R VL H+ G  G+   + + L  M R++     G  S D+ D    + + + G    ++ ++K    +  +  ++   IN   A      +Y+ + L      I   M   + TGN  L+  S       SG T V  ++++   + H   +    F    K +  R +     GF+C   TP+G  CGL+ + A    I+      +Q  +       YS  +     TF     +  + ++G  IGW                 G I      Y++ + +T  +  D      P    G        GG S++ R V    L    D +D+V  G  E +     Y    V  +E Q    HTH++  P   L ++A+L PF   NQSPRN YQC MGKQ +G        R D   +RL   Q P+  +++         P G NA+VA++ + GYD++DA++INK++ ERG       K     +  N     P+ +                +D+DG   IG+ +  GD + +       D  +  T+             Y  SEP  + E     D   + + ++T  +     R P++GDK SSRHGQKGV SR     DMP++E G+ PDII+NPH FPSRMT+G  +E LA K+  + G  +DS+ +           +   +   G++  G E M SG  G  +  D+Y G V+YQRL+HMV DK   R  G    LT QP  GR   GG+RVGEMERD LIG+G S +L++R++ SSD  +A VC +CG + T+++
Sbjct:   93 NKLSVSVEQVSIAKPMSNDGVSSAVERKVYPSESRQRLTSYRGKLLLKLKWSVNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTSQTNVLHY--LNDGQVT-FRFS---WRKNEYL---VPVVMILKALCHTSDREIFDGI-IGNDVKDSFLTDRLELLLRG-FKKRYPHLQNRTQVLQYLGDKFRVVFQ------ASPD------QSDLEVGQEVLDRIVLVHL-GKDGSQD-KFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAINFKDKRYMSRVLMRVNENIGSKMQYFLSTGN--LVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRIST-----QQSDVSRIPSILYSLGVAPASHTFAAGPSLCCVQIDGKIIGWV------------SHEQGKIIADTLRYWKVEGKTPGLPIDLEIGYVPPSTRGQYPGLYLFGGHSRMLRPVRYLPL----DKEDIV--GPFEQV-----YMNIAVTPQEIQ-NNVHTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYF-----DDTLNKTKIK----------TYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQASVCRECGSILTTQQ 1115

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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Nematostella
Match: EDO36897 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7SHD8])

HSP 1 Score: 634.41 bits (1635), Expect = 0.000e+0
Identity = 411/1168 (35.19%), Postives = 624/1168 (53.42%), Query Frame = 1

Query:   91 LVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPS------------SKFFVQISNIKVDKPAIFEYQ-IKIPLYPQQCRVRNFTYAADVTVDIQYPGPGN----KLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSL--FHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNW-HLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITV-NLPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQP-VXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLR----DWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQ-------HTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDV-----IKDNEFLAIPVR------KDRRQHAIDDDGTAAIGSVIRNGDIVISKIVN-PVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGH-YRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEW-----CQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRL 3441
            ++  Y +   LVR  LDSF+ F+++ + +IV+    +D+ +            ++F ++   I + KP  +E      P+ P + R+RN TY+A   VDI      +    ++  + K  IG+IPIMLRS  C L GL + +LT  NEC  D GGYFI  G+E+V + QE+MA N + +   K +K       +   +            +++ K  +   R++    +  SL    + IP+ ++F AL   A +DI E I  + E   E++  V+ S++     Q Q          VA+N        P     +ER +  A++ + + +L HV  S    + +A +LG M  R+LLA  G    DDRD YG KRL++ G  LA +F   F++LM  ++M   K I+  K   ++    ++  +IT+G+   + TGNW    +   AR+GV+QVLNRL++  TL HL R++S   +  K++  R +H +  G +C A+TPEG A GLVKNLA +  I+V + P+   E +E +   +  +   +  + S    I VNG  +G    P   M+   + RRR  +I   VS+  + +   + + SD GR+ RP +IV N  +  L +  H + L         W +LV +GI+EYID  E     +VA    +L E+       +TH +I P+  LGV AS+IPFP HNQSPRNTYQ AMGKQA+GV  TN   R D   H L  PQ+PL  +       ++ LPAG NAIVAI  + GY+ ED++++N ++++RGL++SV  + + D      +   E    P R      ++     +D+DG  A G  +   D+++ K V  P  D  +  T  ++    K A T    SE  IV + + T +   ++  ++K   +R P++GDK +SRHGQKG        +DMP+T +GL PD+I+NPH  PSRMT+G LIE L  K +   G   D++ F++A   VN      ++  +G+ + G EV+ SG  G  +   V+ GP +YQRLKHMV DK+H+R  G  Q LTRQP  GRS DGGLR GEMERDC+I +G++Q L ER+   SDP+   VC  CG++A +        C+ C++   VS + MPYA KLL QELM++ I PR+
Sbjct:   33 VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPEIDLQAESQHMTSDTEIPARFVLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPFYVDITKTRIKDNEEPQVTTHSKMFIGKIPIMLRSTYCLLNGLLDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSKKDSKYS-YTAEIRSCLEHSSRPTSTMWVSMLAKGSSGGRRSAIGQRIVGSLPYIKQEIPIMIVFRALGFVADRDILEHIIYDFE-DQEMMEMVKPSLDEAFVIQEQ---------NVALNFIGSRGARPG--VTKERRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRMYAQKFIDRGKDFNIELA--LKPKVITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNTHWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFMEEWTMENLEEITPSAINTS--TKIFVNGCWVGIHRDPDQLMSTLRKLRRRMDIIVSEVSMVRDFREREIRIYSDAGRICRPLLIVENQKL--LLKKNHIDQLKEREYNEYSWQELVANGIVEYIDVNEE-ETVMVAMTPDELVEKGQAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINAIVAIASYTGYNQEDSVIMNASAIDRGLYRSVFYRSYRDQESKKGLDQEETFEKPTRDAVQGMRNASYDKLDEDGLIAPGIRVSGDDVIVGKTVTLPDNDDELEGT--ARKYSKKDASTFLRPSETGIVDQVMVTINQEGFKFTKIKVRSVRVPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGLSPDVIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDA---VNVQKISQLLNDYGYHLRGNEVLYSGFTGRKLNTQVFLGPTYYQRLKHMVDDKIHSRARGPLQILTRQPMEGRSRDGGLRFGEMERDCMIAHGSAQFLNERLFEVSDPYSCHVCNLCGLIAIANLRNNTFECRGCKNKTQVSRIRMPYAAKLLFQELMSMSIAPRM 1175

[Close]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Nematostella
Match: EDO33368 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7SSE2])

HSP 1 Score: 187.963 bits (476), Expect = 9.976e-49
Identity = 113/311 (36.33%), Postives = 157/311 (50.48%), Query Frame = 1

Query: 2047 THLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGL---------FKSVTSKCFTDVIKDN-EFLAIP--VRKDRRQHAIDDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFS 2943
            TH+++ P   L  +AS+ P+   NQSPRN YQC MGKQ +G        R D   +R+  PQ PL              P G NAIVA++ + GYD+EDA+V+NKAS ERG          F ++  K        N +F  +P   R D R   +D DG   +G+ +  GD   S I     + VV                 YS  E  I+ +                   R P +GDK SSRHGQKG+ S+   +++MP++E G+ PDII NPHGFPSRMT+G +IE +A KSA ++G+  D++ F+
Sbjct:  570 THMELKPTAMLSAIASMTPYSDFNQSPRNMYQCQMGKQTMGTPVHAFQHRTDNKLYRIQTPQSPLVRPASHDFYIMDEYPLGTNAIVAVISYTGYDMEDAMVLNKASYERGFAHGSIYKAQFVNLEPKSQDRTSSSNLQFGTLPDDPRIDGR---LDADGFPPLGAHLSTGDPYYSYIDTNTGEAVVKK---------------YSNLEAGIIDD-------------------RNPIIGDKFSSRHGQKGICSQKWPVENMPFSESGMTPDIIFNPHGFPSRMTIGMMIESMAGKSAALNGHVYDATPFT 843

HSP 2 Score: 58.5362 bits (140), Expect = 1.649e-8
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 1

Query:  301 QCRVRNFTYAADVTVDIQYP---GPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLM 543
            QCR +  TY + + V +Q+     P   + K    VI  IP+M++S  C+L  LS +EL RKNE   + GGYFI  G E++  M
Sbjct:   58 QCREKGSTYCSKLQVTLQWKIDNVPQGSVTK----VIAAIPLMVKSNNCSLANLSPKELVRKNEESQEAGGYFIVNGIEKIIRM 137

[Close]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Nematostella
Match: EDO30235 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7T1C9])

HSP 1 Score: 145.976 bits (367), Expect = 4.497e-40
Identity = 73/169 (43.20%), Postives = 102/169 (60.36%), Query Frame = 1

Query: 2695 VKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRV 3201
            +K    R P +GDK SSRHGQKG+ S+   + +MP++E G  PDII NPHGFPSRMT+G +IE +A KSA ++G+  D++ F+ +        +  ++   G+   G E + SG +G   E D++ G V+YQRL+HMV DK   R  G    LT QP  GR   GG+R 
Sbjct:   18 IKLRIQRNPIIGDKFSSRHGQKGICSQKWPVKNMPFSESG-TPDIIFNPHGFPSRMTIGMMIESMAGKSAALNGHVYDATPFTFSEDDSAIDYFGKLLVKSGYDYFGTERLYSGIDGREFEADIFMGVVYYQRLRHMVADKFQVRTTGPIDALTHQPVQGRKRQGGIRF 185

[Close]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Nematostella
Match: EDO30236 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUS3])

HSP 1 Score: 75.485 bits (184), Expect = 8.093e-17
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 1

Query: 3061 DVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERM 3264
            D++ G V+YQRL+HMV DK   R  G    LT QP  GR   GG+R GEMERD L+ +G S +L++R+
Sbjct:    2 DIFMGVVYYQRLRHMVADKFQVRTTGPIDALTHQPVQGRKRQGGIRFGEMERDALLAHGTSFLLQDRL 69

[Close]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Nematostella
Match: EDO44798 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUS3])

HSP 1 Score: 75.485 bits (184), Expect = 8.093e-17
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 1

Query: 3061 DVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERM 3264
            D++ G V+YQRL+HMV DK   R  G    LT QP  GR   GG+R GEMERD L+ +G S +L++R+
Sbjct:    2 DIFMGVVYYQRLRHMVADKFQVRTTGPIDALTHQPVQGRKRQGGIRFGEMERDALLAHGTSFLLQDRL 69

[Close]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Medaka
Match: polr3b (RNA polymerase III subunit B [Source:NCBI gene;Acc:101174911])

HSP 1 Score: 840.491 bits (2170), Expect = 0.000e+0
Identity = 479/1145 (41.83%), Postives = 685/1145 (59.83%), Query Frame = 1

Query:   82 KHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSK-FFVQISNIKVDKPAIFE-YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAK--YLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDD---LGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILA-GLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSV---TSKC----FTDVIKDN---EFLAIPVRKDRRQHAI-DDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYR-MERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRH 3456
            K  L+  +     LV+ H+DSFN+F+ VE+ KI+K + ++   +   ++++  NI V  P + E + +  P+ P +CR+R+ TY+A +TVDI+Y     ++I+N    IGR+PIMLRS  C L G +  E ++ NEC  D GGYFI KG E+V L+QEQ++KNR+I+++    +KG +                VTS T   K++T +    G FY++++   E  P+ ++F  + + + ++I + IG E  +      S+EE  +  IF+Q QAL +L  +++       +M   P   + EE     AR+ +   +L HVP  V   ++RAK  YL +M RR++LA+ G    DDRD+YG KRLE+ G  L+L+FED F+   S L+    + I   +A Q D  +++RQ  IT GM   I TGNW L RF M R GVTQVL+RLSY+  LG + RISSQFEK RK+SG R++  SQ G +C +DTPEGEACGLVKNLA +  IT ++  E+   +++ +     D     G       + L+ +NG  +G       + +  R  RRAG I+  VS+        +++ SDGGR+ RPYIIV  G    + ++ H E L+ G R+++D +  G++EY+D  E   +C +A  E  + ++ THL+I+P T LGV A LIP+PHHNQSPRNTYQCAMGKQA+G I  NQ  R D   + L  PQRP+  +    L +++ LPAGQNA VA++ + GYDIEDA+V+NKASL+RG  + +    +KC    +T+   D      L    RK   +H I D DG    G  + N  I+++K +  V    +  +        K  P  Y GS  + + + + + +     + ++   Q R+PE+GDK SSRHGQKGV   +V  +DMP+ + G+ PDIIMNPHG+PSRMTVGKLIELLA K+ V+DG +   +AF   G KV   D    +  +G++  GK+ + SG  G  +E  +Y GPV+YQ+LKHMV DK+HAR  G    LTRQP  GRS DGGLR+GEMERDCLIGYGAS +L ER+M+SSD F   VC +CG+L  S  WC  C+SS HVSS+ +PYA KLL QEL ++ I PRL LSR+
Sbjct:   26 KWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRN-ALPIGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVDQ---DRKGTVGA-------------SVTSSTHEKKSRTNIIVKQGRFYLRHNTLSEDAPIAIIFKGMGVESDQEIVQMIGTEEHVMANFAPSLEECQKAQIFTQTQALRFLGNKVR-----RQRMWGGPKKTKMEE-----ARELLASLILTHVP--VKEFNFRAKCIYLAVMVRRVILAQ-GENKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDM--EDGPIIKLALNLGVEDVNLLCGEELSYPSVFLVFLNGNILGVIRNHHKLVSTFRLMRRAGFINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKG--QPMVKSKHIEDLSQGYRNFEDFLHEGLVEYLDVNE-ENDCQIALYEHMINKETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNTKCTLRRYTNQTFDKVMGPMLDAATRKPLWRHNILDADGICCPGEKVENKQILVNKSMPTVTQTPLEGSAQPGQPQYKEVPISYKGSTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGVCPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAF--GGSKVK--DVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSG-WCHYCKSSCHVSSLKIPYACKLLFQELQSMNIIPRLKLSRY 1130

[Close]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Medaka
Match: polr3b (RNA polymerase III subunit B [Source:NCBI gene;Acc:101174911])

HSP 1 Score: 838.565 bits (2165), Expect = 0.000e+0
Identity = 476/1132 (42.05%), Postives = 679/1132 (59.98%), Query Frame = 1

Query:  121 LVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSK-FFVQISNIKVDKPAIFE-YQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAK--YLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDD---LGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILA-GLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSV---TSKCFTDVIKDNEF-------LAIPVRKDRRQHAI-DDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGH-YRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRH 3456
            LV+ H+DSFN+F+ VE+ KI+K + ++   +   ++++  NI V  P + E + +  P+ P +CR+R+ TY+A +TVDI+Y     ++I+N    IGR+PIMLRS  C L G +  E ++ NEC  D GGYFI KG E+V L+QEQ++KNR+I+++    +KG +                VTS T   K++T +    G FY++++   E  P+ ++F  + + + ++I + IG E  +      S+EE  +  IF+Q QAL +L  +++       +M   P   + EE     AR+ +   +L HVP  V   ++RAK  YL +M RR++LA+ G    DDRD+YG KRLE+ G  L+L+FED F+   S L+    + I   +A Q D  +++RQ  IT GM   I TGNW L RF M R GVTQVL+RLSY+  LG + RISSQFEK RK+SG R++  SQ G +C +DTPEGEACGLVKNLA +  IT ++  E+   +++ +     D     G       + L+ +NG  +G       + +  R  RRAG I+  VS+        +++ SDGGR+ RPYIIV  G    + ++ H E L+ G R+++D +  G++EY+D  E   +C +A  E  + ++ THL+I+P T LGV A LIP+PHHNQSPRNTYQCAMGKQA+G I  NQ  R D   + L  PQRP+  +    L +++ LPAGQNA VA++ + GYDIEDA+V+NKASL+RG  + +    +KC      +  F       L    RK   +H I D DG    G  + N  I+++K +  V    +  +        K  P  Y GS  + + + + + +     + ++   Q R+PE+GDK SSRHGQKGV   +V  +DMP+ + G+ PDIIMNPHG+PSRMTVGKLIELLA K+ V+DG +   +AF   G KV   D    +  +G++  GK+ + SG  G  +E  +Y GPV+YQ+LKHMV DK+HAR  G    LTRQP  GRS DGGLR+GEMERDCLIGYGAS +L ER+M+SSD F   VC +CG+L  S  WC  C+SS HVSS+ +PYA KLL QEL ++ I PRL LSR+
Sbjct:   45 LVKQHIDSFNYFINVEIKKIMKANEKITSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRN-ALPIGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVDQ---DRKGTVGA-------------SVTSSTHEKKSRTNIIVKQGRFYLRHNTLSEDAPIAIIFKGMGVESDQEIVQMIGTEEHVMANFAPSLEECQKAQIFTQTQALRFLGNKVR-----RQRMWGGPKKTKMEE-----ARELLASLILTHVP--VKEFNFRAKCIYLAVMVRRVILAQ-GENKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDM--EDGPIIKLALNLGVEDVNLLCGEELSYPSVFLVFLNGNILGVIRNHHKLVSTFRLMRRAGFINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKG--QPMVKSKHIEDLSQGYRNFEDFLHEGLVEYLDVNEE-NDCQIALYEHMINKETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNTKCTLRRYTNQTFDKVMGPMLDAATRKPLWRHNILDADGICCPGEKVENKQILVNKSMPTVTQTPLEGSAQPGQPQYKEVPISYKGSTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGVCPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAF--GGSKVK--DVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSG-WCHYCKSSCHVSSLKIPYACKLLFQELQSMNIIPRLKLSRY 1136

[Close]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Medaka
Match: polr2b (RNA polymerase II subunit B [Source:NCBI gene;Acc:101166780])

HSP 1 Score: 632.484 bits (1630), Expect = 0.000e+0
Identity = 417/1183 (35.25%), Postives = 628/1183 (53.09%), Query Frame = 1

Query:   91 LVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVK-------------THGRVDIPSSKFFVQISNIKVDKPAIFEYQ-IKIPLYPQQCRVRNFTYAADVTVDIQY----PGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMII-----EKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRN--SGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNW-HLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVN---------LPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXX-XXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQ--EILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQ-------HTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDV-----IKDNEFLAIPVRKDRR--QHAI----DDDGTAAIGSVIRNGDIVISKIVN-PVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGH-YRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLA-----TSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLS 3450
            ++  Y +   LVR  LDSF+ F+++ + +IV+             T G V+ P  +F ++   I + KP  +E      P+ P + R+RN TY+A + VDI       G      +++K  IG+IPIMLRS  C L GL++ +L   NEC  D GGYFI  G+E+V + QE+MA N + +      K+  T +    +  S + P   I   + +       K+ + +   S   Y++     + +P+ ++F AL   + +DI E I  + +   E++  V+ S++     Q Q          VA+N        P     +ER +  A++ + + +L HV  S    + +A +LG M  R+LLA  G    DDRD YG KRL++ G  LA +F   F++L+  +++   K I+  K   L+    I+  +I++G+   + TGNW  + +   AR+GV+QVLNRL++  TL HL R++S   +  K++  R +H +  G VC A+TPEG A GLVKNLA +  I+V          L     E LE     + +D    F          VNG  +G    P  +   LR+ RR+  +I   VS+  + +   + + +D GR+ RP +IV    +    R + Q  E       W DLV SG++EYID LE     ++A     L E+       +TH +I P+  LGV AS+IPFP HNQSPRNTYQ AMGKQA+GV  TN   R D   H L  PQ+PL  +       ++ LPAG N+IVAI  + GY+ ED++++N+++++RG F+SV  + + +          E    P R+  +  +HAI    DDDG  A G  +   D++I K V  P  D  + +T  +K    +   T    SE  IV + + T +   Y+  +++   +R P++GDK +SRHGQKG        +DMP+T +G+ PDII+NPH  PSRMTVG LIE L  K +   G   D++ F++A   VN     +++  +G+ + G EV+ +G  G  +   ++ GP +YQRLKHMV DK+H+R  G  Q L RQP  GRS DGGLR GEMERDC I +GA+Q LKER+  +SDP++  VC  CG++A     T    C+ CR+   +S + MPYA KLL QELM++ I PR+  S
Sbjct:   29 VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEEPP-RFLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSR-PTSTIWVSMMARGGQGVKKSAIGQRIVSTLPYIR-----QEVPIIIVFRALGFVSDRDILEHIIYDFD-DPEMMEMVKPSLDEAFVIQEQ---------NVALNFIGSRGAKPG--VTKERRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNLELA--IKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIF----------VNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEE-ETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDST--NKRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDA---VNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLIRMPYACKLLFQELMSMSIAPRMMTS 1174

[Close]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Medaka
Match: polr1b (RNA polymerase I subunit B [Source:NCBI gene;Acc:101159846])

HSP 1 Score: 382.104 bits (980), Expect = 1.244e-113
Identity = 323/1178 (27.42%), Postives = 540/1178 (45.84%), Query Frame = 1

Query:   70 IMDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSKFFVQISNIK--VDKPAIFEYQI--KIPLYPQQCRVRNFTYAADVTVDIQYP--GPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMII---EKFKITKKGGIKVPLSEK-IPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESI----ELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKY--LGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQ----SLITEGMFQCIFTGNWHLMRF--SMARSGVTQVLNRLSYLGTLGHLGRI--SSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEI------TVNLPAEEQEQLEMFIRRSYSDDLGTFRHQ-SGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKC----FTDVIKDNEFLAIPVR--KDRRQHAIDDDGTAAIGSVIRNGDIVISKI-VNPVKDPV-VAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATS---------------KEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRL 3441
            + D +H+ ++       L + H++SF+  V   + + V+    ++  S    + +S ++  +  PA+ +  I  +  ++P +CR R  +Y   +  DI +   G    +IK     +G++PIM++S++CNL+G+S +EL + +E   + GGYFI  G E+V  M     +N  I     K+K   +G  +  +S + + D+    ++  + + N T   V  N   F  Q  LF   +PL     AL       I++ +    E ++     V E +    E G  ++ + L +L  R +V +N     T                  E C  +L +    +   S   K+  L LM+R++          ++ D    + +   G    +  +++  + + ++++   K  +   A        I+     S +T+     + TGN +       +  SG+  V ++L+++  L H   +   + F K+R  S  R +     GF+C   TP+GE CGL+ ++    E+      T +LPA       +      +   GT     S    ++++G  +GW    +A A     RR   L    V  + E  +    V   G   + P + +      ++ R V    L            G  E+I   E     +   EE       TH ++ P + L VVA+ IPF  HNQSPRN YQC MGKQ +G    +   R D   +RL  PQ  L   ++    N    P+G NAIVA++ + GYD+EDA+++NK+S ERG       K       D ++  + +    +    +    +D DG   +GSV++ GD   S I +N  +  V    ++ + V+D     +  SGS             G ++   + T   R P +GDK +SRHGQKG++SR+   +DMP+TE G+ PDI+ NPHGFPSRMT+G LIE +A KSA + G   D++ F+ +        +  ++RA G++  G E + SG +G  +E D++ G V+YQRL+HMV DK   R  G   ++T QP  GR+  GG+R GEMERD L+ +G+S +L +R+   SD   A +C  CG L +                K  C +C  S  +++V +PY  +  + EL  + I  +L
Sbjct:   27 LTDQQHAAIQ------DLTKAHIESFDQAVTDGLIRAVQAIPPLEFMSKNDQISLSFVEAAIYSPAVAKGSICRETKVFPAECRGRRCSYKGKLVADISWAINGVPKGIIKQS---LGQVPIMVKSRLCNLHGMSPKELVKHHEEAEEMGGYFIVNGIEKVVRMLIMPRRNYPIAMSRPKWKSRGQGYTQYGVSMRCVKDDHTAINLNLHYLENGT---VMLN---FIYQKELFF--LPLGFALKALVDFTDFQIYQELIKGREDNSFYKTCVSEMLRVVMEEGCTTRSKVLTYLGERFRVKLNLPEWYT-----------------NEQCANILLNECICIHLKSDTEKFYLLCLMSRKLFSHAKQECMEENPDSIMCQEVLTPGQLYLMFLKERMTAWLVSVKLSFDKRGSKVFARGWSTENVIKMLNMGSDVTKPFEYLLATGNLNSKTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTS-VRKLLPESWGFLCPVHTPDGEPCGLMNHMTASCEVVAASSPTTSLPA-------LLCSLGVTPVDGTPAQAFSDCYPVVLDGSVVGWVETDLAPAVVDAMRRFKVLRERKVPPWTEIVL----VPKTGKASLYPGLFLFTTPC-RMMRPVQNLAL------------GKQEFIGTFEQLYTNVGILEEEIEAGVTTHQELFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLHSFMDRSDNKLYRLQTPQSALVRPYMYDHYNLDNYPSGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSIYKTELVDLADKVRGEDAVVFGTKPGDPKVNDKLDADGLPRVGSVLQYGDPFYSYINLNTGQSCVHFYKSQEACVVDNIKICSNDSGS-------------GQFKRICITTRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSAALHGRSHDATPFTFSEENSALDHFGELLRAGGYNYYGTERLYSGVSGRELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNIQGGIRFGEMERDALLAHGSSFLLHDRLFNCSDRSEAQMCVDCGSLLSPLLEKPPPCWSAMRHRKTLCTLCGKSDSINAVSVPYVFRYFVAELAAMNIKVKL 1132

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BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Match: SMESG000032705.1 (SMESG000032705.1)

HSP 1 Score: 2335.84 bits (6052), Expect = 0.000e+0
Identity = 1133/1133 (100.00%), Postives = 1133/1133 (100.00%), Query Frame = 1

Query:   73 MDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSKFFVQISNIKVDKPAIFEYQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDVIKDNEFLAIPVRKDRRQHAIDDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRHETAVL 3471
            MDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSKFFVQISNIKVDKPAIFEYQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMEEEERSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVAMAAALRERRRAGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDVIKDNEFLAIPVRKDRRQHAIDDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRHETAVL
Sbjct:    1 MDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSKFFVQISNIKVDKPAIFEYQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMEEEERSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGWTYQPVAMAAALRERRRAGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFEECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDVIKDNEFLAIPVRKDRRQHAIDDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRLTLSRHETAVL 1133

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BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Match: SMESG000067331.1 (SMESG000067331.1)

HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0
Identity = 392/1186 (33.05%), Postives = 603/1186 (50.84%), Query Frame = 1

Query:   76 DSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSKFFVQISNIKVDKPAIFEY---QIKI-------------PLYPQQCRVRNFTYAADVTVDI-QYPGPGNKLIKN--EKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLE---SELHNELICSVEESIELGIFSQRQALMWL-----IPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNW-HLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNL--IMVNGVPIGWTYQP-VXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRD-------WDDLVRSGIIEYIDALEGYAECLVAF-----EECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSV-------------TSKCFTDVIKDNEFLAIPVRKDRRQHAIDDDGTAAIGSVIRNGDIVISKIVN-PVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKI--TTFDGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSK-----EWCQMCRSSQHVSSVVMPYATKLLMQELMTIQITPRL 3441
            +S  +++  +     LVR  LDSF+ F+   + +IV+   +++I     +        D P   EY   QI +             P+ P   R+RN TY A V VD+ Q     +  I +  ++  IG+IPIMLRS  C L  +S+ +L + NEC  D GGYFI  G+E+V + QE+MA N + +  F    K   K  +   +             ++ K+ +                 + IP+ ++F A+   + +DI E    +   +++H  L  S++E+    I  +  AL ++      P I VA                  + +  A+  I +  L H+  +    + +A +LG M  R+L       + DDRD  G KRL++ G  LA +F+  F++L   L+    K I+  K  +L     ++ ++IT+G+   + TGNW    + S  R GV+QVLNRL++  TL HL R++S   +  KI   R +H +Q G VC A+TPEG A GLVKNLA +  I+V     + + +  F+     + L      +  N   I +NG  +G    P   MA   + RR   ++   VS+  +   + + + +D GR+ RP IIV +G       A+ +E +  L++       W +LV  G++EYID LE     +        +  Q  + HTH +I P+  LGV AS+IPFP HNQSPRNTYQ AMGKQA+GV  +N   R D   H L   Q+PLT +       ++ LPAG NAIVAI  + GY+ ED++++N++++ERG+F+S              +++   ++ K N+   + +R++     +D DG  + G  +  GD+++ K V  P  D  +     SK    K   + +       +V+K+  TT +   +  +++    + P++GDK +SRHGQKG        +DMP+T +G+ PDII+NPH  PSRMTVG LIE L  K +   G   D++ F++A   VN      V+  +G+  +G E+M +G  G  M   V+ GP +YQRLKHMV DK+H+R  G    +TRQP  GRS +GGLR GEMERDC I +GA+Q LKER++  SD +  +VC  CG + T+        C  C  S  VS + +PYA KLL QEL ++ IT RL
Sbjct:   13 ESSWTVISSFFEEKGLVRQQLDSFDEFLMTSIQRIVEEFPKLEIQGETQY----GSGCDTPNKCEYSFGQIYLSKATHWESDGTGSPMMPNDARLRNLTYCAPVFVDVTQKNMRSDDEITDTTDRTCIGKIPIMLRSTYCLLSEMSDVDLAQLNECPLDPGGYFIINGSEKVIIAQERMANNTVFV--FPAKDKYSYKCNVKSMVEYSFRSASNLGVNLLAKSGSGKRVVGPKIVCTMPFLKQEIPIIILFRAMGFVSDRDIIEHTIYDPDDTDMHEMLKPSIDEA--FVIQDEHHALNYIGSRGVKPGIPVA------------------QRIKFAKDVITKETLPHIGTTEFRSTRKAYFLGYMVHRLLSTALKRRNPDDRDHMGHKRLDLAGPLLAFLFKGFFKNLAKELKNNTLKIID--KTRELKAGLALKSNVITDGLKYSLATGNWGDQKKASETRKGVSQVLNRLTFASTLSHLRRLNSPSGRDGKIPKPRQLHNTQWGMVCPAETPEGHAVGLVKNLALMAYISV---GSKSDPIIEFLEEWSMESLEEIAPSAIANATKIFINGSWVGIHRDPDQLMATLKKLRRSMDVVVSEVSIVRDYSGKEIKIYTDSGRICRPLIIVNDGKF-----AIKKEHIKRLKEKAHARYGWQELVSDGVVEYIDTLEEETSMIAMVPADITKNSQYCKTHTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYISNFHTRMDTLAHVLYYSQKPLTTTRAMEYLRFRELPAGINAIVAIASYTGYNQEDSVILNESAIERGIFRSEFYRTVNESESRNNSTEFVENIEKPNKEETLGMREEEYV-KLDADGIVSPGVRVSGGDVLLGKTVTLPATDDFIETVGNSKF--KKRDCSLFMRKTEQGIVDKVMLTTNNEGSKFCKIRIRTTKIPQIGDKFASRHGQKGTCGIRYRQEDMPFTSEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANRGEIGDATPFNDA---VNVRKISRVLSDYGYEANGNEIMYNGYTGRKMTTTVFFGPTYYQRLKHMVDDKIHSRARGPVTMMTRQPLEGRSKEGGLRFGEMERDCQIAHGAAQFLKERLLDVSDSYFIYVCRICGQMVTANIKNQTFKCLSCNKSTEVSKIRLPYAAKLLSQELQSMHITMRL 1156

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BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Match: SMESG000055060.1 (SMESG000055060.1)

HSP 1 Score: 581.252 bits (1497), Expect = 0.000e+0
Identity = 385/1165 (33.05%), Postives = 595/1165 (51.07%), Query Frame = 1

Query:   76 DSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSKFF-----------VQISNIKVDKPAIFEYQ-IKIPLYPQQCRVRNFTYAADVTVDIQY---PGPGNKLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYTIVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGLESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTSMXXXXRSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENGLISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKANQLDPTQYIRQSLITEGMFQCIFTGNW-HLMRFSMARSGVTQVLNRLSYLGTLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQLEMFIRRSYSDDLGTFRHQ--SGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXG-LIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRD----WDDLVRSGIIEYIDALEGYAECLVAF------EECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDVIKDNEFLAIPVRK----------DRRQHAIDDDGTAAIGSVIRNGDIVISKIVN-PVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGH-YRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGD-YQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGMLA-----TSKEWCQMCRSSQHVSSVVMPYATKLLMQELMTIQI 3429
            DS  S++  + +S  LV   LDS++ F+   + +IV     V+I     +            +   I + +P  +E   I   L+P + R+RN TY++++ +D +       G    + E+  IG IP+ML+S  C L  +++ +LT+ NEC  D GGYFI  G+E+V + QE+MA N + +  F    K   K  +   + D           ++ K  +           Q     E IPL ++F A+   + +D+ E +  + +  + L        E  +    Q  +  I    V   KE     +P       + +  A+  + +  L H+  +  +++ +A +LG M  ++L    G  + DDRD  G KR+++ G  LA +F+  F++L   L++  T+ I+ N  +    +  IR ++IT+G    + TGNW    + S  R GV+QVLNRL+++  L HL R +S   +  KI+  R +H +Q G VC A+TPEG A GLVKNL+ +  I+V     +   +  F+     ++L        S  + I+VNG  IG    P  +   L++ +R+  +I   VS+  +   + + + SDGGR+ RP I+V +G +S   +  H + L  L +    W +LV  G+IEY+D +E     ++A       +  Q  + HTH +I P+  LGV AS+IPFP HNQSPRN YQ AMGKQALG   +N   R D   H L   Q+PLT S   T   Y+ LPAG NAIVAI  + GY+ ED+I++N++++ERGLF+S   +  ++ +  +      + K          +R    +DDDG   +GS +  GD +I K V  P  D     +++S +M  +        +E   V + + T D +   M +V     + P++GDK +SRHGQKG        +DMP+T +G+ PDII+NPH  PSRMT+G LIE L  K   ++ N+                D YQ+V+           V+ +G  G  +   V+ GP +YQRLKHMV DK+H+R  G    +TRQP  GR+ DGGLR GEMERDC I +GAS  LKER+   SDP+  ++C  CG +      T+   C++CR   +V  V +PYA KLLMQEL ++ I
Sbjct:   12 DSSWSVISSFFDSKGLVSQQLDSYDEFITSSVQQIVNEFQTVEIEGETKYNLGNDIPNRCEYKFGQISLRQPCHYEPSGICTRLFPNEARLRNLTYSSELLIDYEMNVNKSNGETRKETEQVKIGEIPMMLKSTYCVLGNMTDIDLTQLNECPLDPGGYFIVNGSEKVIIAQERMATNTVFV--FPSKDKYLYKCSIKSMVEDSFRSSSTFGVHLLAKGGSGKRTTGSKIVCQLPFIKEDIPLVIVFRAMGFVSERDVIERVIYDDKDMDMLDMLQPSIDEAFVIQDEQTALNFIGSRGV---KEG----TPIQ-----QRIKFAKDILTKETLPHIGLTEASMNKKAYFLGYMVHKLLETSLGKRAPDDRDHMGNKRIDLAGPLLATLFKGFFKNLAKELKLNTTRMIDRN--SDFHSSHAIRSNIITDGFKYSLATGNWGDQKKASETRKGVSQVLNRLTFVSALSHLRRTNSPTGRDSKIAKPRQLHNTQWGMVCPAETPEGHAVGLVKNLSLMTNISV---GSKSRPIIEFLEEWGMENLNDISPSAVSEGSKIIVNGSWIGIHRDPNQLVKTLKKLKRSADVIVSEVSINQDFNNKEIKINSDGGRLCRPLIVVEDGSLS--IKKSHIQRLGSLDNYQYGWKELVHGGVIEYLDTME-EENAMIAMVPSDISKGSQYCKTHTHCEIHPSMILGVCASIIPFPDHNQSPRNCYQSAMGKQALGFYTSNFHARMDTLAHVLYYSQKPLTASRAMTYLKYRELPAGVNAIVAISTYTGYNQEDSIILNESAIERGLFRSDFYRTVSETVNHSGHQVEAIEKPNSQETLGMREREYTKLDDDGIIRVGSCVYGGDPLIGKTVTIPPSDEFTETSKSSDLMK-RDCSVFMRKTEKGFVDKALRTTDNNGSTMVKVTMRTTKIPQIGDKFASRHGQKGTCGIKYRHEDMPFTAEGISPDIIINPHAIPSRMTIGHLIETLLGKVGQLEENWAMQHLLMTRLMLEKYVDYYQNVIM-------NPPVLYNGFTGRKINTTVFFGPTYYQRLKHMVDDKIHSRARGPVTMMTRQPLEGRAKDGGLRFGEMERDCQIAHGASLFLKERLFDCSDPYIVYICRHCGEIVIANPKTAVFTCKVCRKIPNVVKVKIPYAAKLLMQELKSMHI 1146

[Close]

BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Match: SMESG000054853.1 (SMESG000054853.1)

HSP 1 Score: 338.576 bits (867), Expect = 9.832e-104
Identity = 180/442 (40.72%), Postives = 255/442 (57.69%), Query Frame = 1

Query: 2029 QLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFTDVIKDNEFLAIPVRK----------DRRQHAIDDDGTAAIGSVIRNGDIVISKIVN-PVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGH-YRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMMLSSDPFRAWVCEKCGML 3318
            Q  + HTH +I P+  LGV AS+IPFP HNQSPRN YQ AMGKQALG   +N   R D   H L   Q+PLT S   T   Y+ LPAG NAIVAI  + GY+ ED+I++N++++ERGLF+S   +  ++ +  +      + K          +R    +DDDG   +GS +  GD +I K V  P  D     +++S +M  +        +E   V + + T D +   + +V     + P++GDK +SRHGQKG        +DMP+T +G+ PDII+NPH  PSRMT+G LIE L  K   + G   D++ F++   ++N G    ++    +  +G EV+ +G  G  +   V+ GP +YQRLKHMV DK+H+R  G    +TRQP  GR+ DGGLR GEMERDC I +GAS  LKER+   SDP+  ++C  CG +
Sbjct:   11 QYCKTHTHCEIHPSMILGVCASIIPFPDHNQSPRNCYQSAMGKQALGFYTSNFHARMDTLAHVLYYSQKPLTASRAMTYLKYRELPAGVNAIVAISTYTGYNQEDSIILNESAIERGLFRSDFYRTVSETVNHSGHQVEAIEKPNSQETLGMREREYTKLDDDGIIRVGSCVYGGDPLIGKTVTIPPSDEFTETSKSSDLMK-RDCSVFMRKTEKGFVDKALRTTDNNGSTLVKVTMRTTKIPQIGDKFASRHGQKGTCGIKYRHEDMPFTAEGITPDIIINPHAIPSRMTIGHLIETLLGKVGAIRGELGDATPFND---EINVGKICRLLSECDYESTGNEVLYNGFTGRKINTTVFFGPTYYQRLKHMVDDKIHSRARGPVTMMTRQPLEGRAKDGGLRFGEMERDCQIAHGASLFLKERLFDCSDPYIVYICRHCGEI 448

[Close]

BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Match: SMESG000009943.1 (SMESG000009943.1)

HSP 1 Score: 269.626 bits (688), Expect = 9.891e-75
Identity = 221/763 (28.96%), Postives = 344/763 (45.09%), Query Frame = 1

Query: 1393 QVLNRLSYLGTLGHLGRIS--------------SQFEKVRKISGARAIHL-----------------SQHGFVCVADTPEGEACGLVKNLAFLVEITVNLPAEEQEQ-LEMFIRRSYSD--DLGTFRHQSGMNLIMVNGVPIGWTYQPVXXXXXXXXXXXXGLIHPHVSVYYETKMETLHVCSDGGRMVRPYIIVGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALE-GYAECLVAFEECQLTEQH---------THLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGVIATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCFGGYDIEDAIVINKASLERGLFKSVTSKCFT-DVIKDNEFLAIPVRK--DRRQHAIDDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTCYSGSEPTIVVEKITTFDGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVISRVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNYRDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYTGPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDCLIGYGASQILKERMM-LSSDPFRAWVCEKCGMLATS---------------------KEW-CQMCR-------SSQHVSSVVMPYATKLLMQELMTIQITPRLTLS 3450
            ++LN + YL + G LG+I+                    R I+  RA H                     GFVC   TP+G  CGL+ + +    +  +  + +Q+  LE F+++S  +   + +F  +S    +M+NG  +G+ Y   A   A   R +     P + V   T++   ++     +    YI   +G   +L R V+  I+ G           +IEYI   E  Y +       CQ              TH ++   +     A   P+ ++N SPRN YQC M KQ++G    +   R D   +  + PQ PLT S      N +  P G N IVAI  +  YD+EDA+VIN  SLERG+ +    K +  D+  D   L   V    ++    +D DG   IG+ +  G        + +     + TE  KV       T Y  S+   V+    + +G      +     R  ++GDK SSRHGQKGV S  +   D+P +EDG+VPD + NPH  PSRMTVG +IE +A K A +     DS+AF +    V E  Y + +R++ +   G E    G  G +M+ ++  G V+YQRL+H+V+DK   R  GK   +TRQP  GR   GG+R+GEMERD L+ +GA+  L++R++  +SD      C  C     S                       W C++C        S++++  V +P  T+  + EL T+ +  +L+++
Sbjct:  310 RILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVQASAASSDQDDSLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSG---RLLRPVYN-IMFG---------EPVIEYIGTFEQTYLDI-----SCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGK-------SNMYAQYSSQTEQVKV-------TKYKESQVGYVIN--ISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF-QTSDIVEE--YMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 1035

HSP 2 Score: 54.6842 bits (130), Expect = 4.873e-7
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = 1

Query:  397 VIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKGTERVFLMQEQMAKNRMIIEKFKITKKGG 606
             +G IPIM+RS +C+L+GLS EEL + +E   + GGYFI KG + +     Q  +N  +++ FK  +K G
Sbjct:   18 TVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQ-FKPHQKVG 86

The following BLAST results are available for this feature:

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Human
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Celegans
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Fly
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Zebrafish
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Xenopus
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Mouse
BLAST of DNA-directed RNA polymerase subunit beta vs. UniProt/SwissProt
BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Cavefish
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Sea Lamprey
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Yeast
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Nematostella
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Medaka
BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
POLR3B	0.000e+0	41.25	RNA polymerase III subunit B [Source:HGNC Symbol;A...	[more]
POLR3B	0.000e+0	41.49	RNA polymerase III subunit B [Source:HGNC Symbol;A...	[more]
POLR2B	0.000e+0	34.64	RNA polymerase II subunit B [Source:HGNC Symbol;Ac...	[more]
POLR2B	0.000e+0	34.64	RNA polymerase II subunit B [Source:HGNC Symbol;Ac...	[more]
POLR2B	0.000e+0	34.64	RNA polymerase II subunit B [Source:HGNC Symbol;Ac...	[more]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 4


Match Name	E-value	Identity	Description
rpc-2	0.000e+0	41.37	DNA-directed RNA polymerase subunit beta [Source:...	[more]
rpc-2	0.000e+0	41.37	DNA-directed RNA polymerase subunit beta [Source:...	[more]
rpb-2	0.000e+0	34.65	DNA-directed RNA polymerase II subunit RPB2 [Sour...	[more]
rpoa-2	2.120e-77	27.89	DNA-directed RNA polymerase subunit beta [Source:...	[more]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 4


Match Name	E-value	Identity	Description
RpIII128	0.000e+0	40.49	gene:FBgn0004463 transcript:FBtr0087977	[more]
RpII140	0.000e+0	35.73	gene:FBgn0262955 transcript:FBtr0082892	[more]
RpII140	0.000e+0	35.73	gene:FBgn0262955 transcript:FBtr0344600	[more]
RpI135	2.921e-83	30.46	gene:FBgn0003278 transcript:FBtr0078054	[more]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
polr3b	0.000e+0	41.06	polymerase (RNA) III (DNA directed) polypeptide B ...	[more]
polr3b	0.000e+0	41.06	polymerase (RNA) III (DNA directed) polypeptide B ...	[more]
polr2b	0.000e+0	35.36	polymerase (RNA) II (DNA directed) polypeptide B [...	[more]
polr1b	1.811e-91	32.47	RNA polymerase I subunit B [Source:ZFIN;Acc:ZDB-GE...	[more]
polr1b	1.811e-91	32.47	RNA polymerase I subunit B [Source:ZFIN;Acc:ZDB-GE...	[more]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
polr3b	0.000e+0	41.43	polymerase (RNA) III (DNA directed) polypeptide B ...	[more]
polr3b	0.000e+0	41.73	polymerase (RNA) III (DNA directed) polypeptide B ...	[more]
polr3b	0.000e+0	41.32	polymerase (RNA) III (DNA directed) polypeptide B ...	[more]
polr3b	0.000e+0	41.17	polymerase (RNA) III (DNA directed) polypeptide B ...	[more]
nfkbia	0.000e+0	34.89	NFKB inhibitor alpha [Source:Xenbase;Acc:XB-GENE-4...	[more]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Polr3b	0.000e+0	41.17	polymerase (RNA) III (DNA directed) polypeptide B ...	[more]
Polr2b	0.000e+0	34.64	polymerase (RNA) II (DNA directed) polypeptide B [...	[more]
Polr1b	4.610e-118	28.73	polymerase (RNA) I polypeptide B [Source:MGI Symbo...	[more]
Polr1b	9.444e-31	24.82	polymerase (RNA) I polypeptide B [Source:MGI Symbo...	[more]
Polr3b	6.854e-20	31.28	polymerase (RNA) III (DNA directed) polypeptide B ...	[more]

BLAST of DNA-directed RNA polymerase subunit beta vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P25167\|RPC2_DROME	0.000e+0	40.49	DNA-directed RNA polymerase III subunit RPC2 OS=Dr...	[more]
sp\|Q9NW08\|RPC2_HUMAN	0.000e+0	41.25	DNA-directed RNA polymerase III subunit RPC2 OS=Ho...	[more]
sp\|P59470\|RPC2_MOUSE	0.000e+0	41.17	DNA-directed RNA polymerase III subunit RPC2 OS=Mu...	[more]
sp\|Q10233\|RPC2_SCHPO	0.000e+0	40.36	DNA-directed RNA polymerase III subunit RPC2 OS=Sc...	[more]
sp\|P22276\|RPC2_YEAST	0.000e+0	39.55	DNA-directed RNA polymerase III subunit RPC2 OS=Sa...	[more]

BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A5K3EII2	0.000e+0	42.82	DNA-directed RNA polymerase subunit beta OS=Mesoce...	[more]
A0A267GS75	0.000e+0	44.66	DNA-directed RNA polymerase subunit beta (Fragment...	[more]
A0A0R3UF74	0.000e+0	42.67	DNA-directed RNA polymerase subunit beta OS=Mesoce...	[more]
A0A158RDV5	0.000e+0	42.98	DNA-directed RNA polymerase subunit beta OS=Hydati...	[more]
A0A267GW75	0.000e+0	44.52	DNA-directed RNA polymerase subunit beta (Fragment...	[more]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4


Match Name	E-value	Identity	Description
polr3b	0.000e+0	41.64	RNA polymerase III subunit B [Source:NCBI gene;Acc...	[more]
polr3b	0.000e+0	41.88	RNA polymerase III subunit B [Source:NCBI gene;Acc...	[more]
POLR2B	0.000e+0	35.54	RNA polymerase II subunit B [Source:HGNC Symbol;Ac...	[more]
polr1b	2.697e-114	28.11	RNA polymerase I subunit B [Source:NCBI gene;Acc:1...	[more]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 4


Match Name	E-value	Identity	Description
ENSPMAT00000001310.1	3.177e-171	37.88	pep scaffold:Pmarinus_7.0:GL477974:3852:23589:-1 g...	[more]
ENSPMAT00000008572.1	3.246e-171	32.69	pep scaffold:Pmarinus_7.0:GL476831:175452:211422:1...	[more]
ENSPMAT00000009064.1	3.732e-145	47.31	pep scaffold:Pmarinus_7.0:GL481227:16752:24008:-1 ...	[more]
ENSPMAT00000002293.1	6.255e-41	34.47	pep scaffold:Pmarinus_7.0:GL487410:805:8051:1 gene...	[more]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 3


Match Name	E-value	Identity	Description
RET1	0.000e+0	39.55	Second-largest subunit of RNA polymerase III; RNA ...	[more]
RPB2	0.000e+0	33.66	RNA polymerase II second largest subunit B150; par...	[more]
RPA135	5.514e-99	27.51	RNA polymerase I second largest subunit A135 [Sour...	[more]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO36897	0.000e+0	35.19	DNA-directed RNA polymerase [Source:UniProtKB/TrE...	[more]
EDO33368	9.976e-49	36.33	DNA-directed RNA polymerase [Source:UniProtKB/TrE...	[more]
EDO30235	4.497e-40	43.20	DNA-directed RNA polymerase [Source:UniProtKB/TrE...	[more]
EDO30236	8.093e-17	50.00	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO44798	8.093e-17	50.00	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4


Match Name	E-value	Identity	Description
polr3b	0.000e+0	41.83	RNA polymerase III subunit B [Source:NCBI gene;Acc...	[more]
polr3b	0.000e+0	42.05	RNA polymerase III subunit B [Source:NCBI gene;Acc...	[more]
polr2b	0.000e+0	35.25	RNA polymerase II subunit B [Source:NCBI gene;Acc:...	[more]
polr1b	1.244e-113	27.42	RNA polymerase I subunit B [Source:NCBI gene;Acc:1...	[more]

BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000032705.1	0.000e+0	100.00	SMESG000032705.1	[more]
SMESG000067331.1	0.000e+0	33.05	SMESG000067331.1	[more]
SMESG000055060.1	0.000e+0	33.05	SMESG000055060.1	[more]
SMESG000054853.1	9.832e-104	40.72	SMESG000054853.1	[more]
SMESG000009943.1	9.891e-75	28.96	SMESG000009943.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence
protein sequence
protein sequence

transcript sequence

>SMED30027218 ID=SMED30027218|Name=DNA-directed RNA polymerase subunit beta|organism=Schmidtea mediterranea sexual|type=transcript|length=3490bp
GTTTAAATATTCGTTATAAAGTTGCAAATTGTGAACCTTTGAATATAATT
ATTTAATTTTTGATAAATTATTATGGACTCAAAACATTCCTTAGTTAAAT
TGTATAATAATTCTCACAGTCTTGTTAGACATCATCTAGATTCATTCAAT
CATTTTGTTGAAGTTGAAATGGGAAAAATTGTCAAAACTCACGGCCGTGT
TGATATCCCTTCTTCAAAGTTTTTTGTGCAAATTTCTAATATCAAAGTTG
ATAAGCCAGCAATATTTGAATATCAAATCAAAATTCCATTATATCCCCAG
CAATGCCGAGTCCGAAATTTCACTTATGCTGCAGATGTCACAGTTGATAT
CCAATATCCCGGGCCTGGAAATAAATTAATTAAAAACGAAAAATTTGTCA
TCGGTAGAATACCGATTATGCTGCGATCGAAGATTTGCAATTTATATGGA
TTATCGAATGAAGAGCTGACAAGAAAAAACGAGTGCATTTACGATACTGG
TGGATATTTCATTACTAAAGGAACAGAAAGAGTATTTCTAATGCAAGAAC
AAATGGCGAAAAATCGAATGATTATTGAAAAATTCAAAATCACGAAGAAA
GGTGGAATAAAAGTGCCTCTGTCGGAGAAAATTCCCGACGAAGATATCGT
ATGCCATGTGACGAGTTACACGATTGTCAACAAAACCAAAACGACTGTAT
TCAGAAACAGCGGATATTTCTACGTGCAAAACTCGCTATTTCACGAATCG
ATCCCGCTATTTGTAATGTTTGCCGCGCTGAACATGCCGGCTCACAAGGA
CATATTCGAATCGATCGGATTGGAGAGCGAGCTGCACAACGAGTTGATTT
GCAGTGTGGAGGAGTCAATCGAGCTGGGAATATTCTCGCAACGACAAGCA
CTGATGTGGCTCATTCCGAGGATCAAAGTGGCCATGAACAAGGAGAACAA
GATGACAACGAGCCCGACATCAATGGAGGAGGAGGAACGGAGCTTACTGA
TGGCCAGACAGGAGATCTGTCGCCGCGTGCTCAATCACGTGCCCGGTAGC
GTTGGCAACCTGTCGTATCGGGCTAAATATCTCGGCCTGATGACCAGGCG
GATCCTGCTGGCGGAAAACGGGCTGATCTCAGCGGATGATCGCGATTTCT
ACGGGATCAAGCGGCTGGAAATGGTCGGCACGTATCTGGCACTGATGTTT
GAGGACAAGTTCCAATCGCTCATGTCGGCACTGCAGATGGAGCTCACCAA
GACAATCAATGCCAATAAGGCCAATCAGCTGGACCCGACTCAATATATCC
GCCAATCGCTGATCACTGAGGGAATGTTCCAGTGCATTTTCACCGGCAAT
TGGCATCTGATGCGGTTCTCCATGGCCCGGAGCGGCGTTACTCAGGTGCT
CAACCGGCTGAGCTACCTGGGCACGTTGGGCCACCTCGGCAGGATCAGCA
GTCAGTTCGAGAAGGTCAGAAAGATATCGGGAGCCAGAGCGATCCATCTG
AGCCAGCACGGATTCGTCTGTGTCGCCGACACTCCAGAAGGCGAAGCGTG
CGGCCTCGTGAAGAATTTGGCGTTCCTGGTGGAGATCACGGTGAATTTGC
CGGCCGAGGAGCAGGAGCAGCTGGAGATGTTCATTAGGAGGAGTTACTCG
GATGATTTAGGCACGTTCCGGCATCAGTCCGGCATGAATCTGATCATGGT
GAACGGCGTGCCGATCGGCTGGACCTATCAGCCCGTTGCTATGGCTGCAG
CGCTCCGTGAGCGCCGCCGTGCCGGCCTCATCCACCCACACGTGTCGGTC
TATTACGAGACCAAGATGGAGACGCTCCACGTGTGCAGTGACGGCGGCAG
AATGGTGCGCCCCTACATCATTGTGGGCAACGGCGGCGTCAGCAAGCTCA
CACGTGCCGTTCACCAGGAGATCCTTGCAGGTCTCCGCGACTGGGACGAT
TTAGTAAGGAGCGGCATCATTGAGTATATCGATGCGTTGGAGGGCTATGC
GGAATGCCTGGTGGCGTTTGAGGAGTGCCAGCTCACTGAGCAGCACACTC
ACCTCGATATCGACCCGGCAACAGCGCTCGGAGTCGTGGCCAGCCTCATC
CCGTTCCCACATCACAATCAGTCGCCTAGGAACACATATCAATGCGCCAT
GGGCAAGCAAGCACTCGGCGTTATCGCCACCAATCAGAGCAAGCGATGTG
ACGGCACACAACACAGATTAGTGGCCCCCCAACGGCCCTTGACAATGAGC
CATGTCGGCACGCTGACCAATTACCAATTCTTACCTGCCGGTCAAAACGC
CATTGTCGCTATCCTTTGTTTCGGTGGCTACGATATCGAGGATGCAATCG
TTATTAATAAGGCCTCCCTCGAGCGGGGCCTGTTCAAGAGCGTGACCTCG
AAATGCTTCACCGATGTTATCAAGGACAACGAGTTTTTGGCCATTCCCGT
CAGGAAAGACAGGAGGCAGCACGCAATCGATGACGACGGAACAGCAGCAA
TCGGATCTGTCATCAGAAATGGGGATATTGTCATCAGCAAGATCGTAAAC
CCAGTCAAGGATCCCGTGGTGGCGGCTACCGAAGCGTCTAAGGTCATGGA
TCCAAAGCCAGCGCCAACGTGTTACAGTGGGAGCGAGCCAACGATTGTAG
TGGAGAAAATTACGACATTTGATGGGCATTACAGAATGGAGCGCGTAAAA
ACCAGTCAAATGAGGCAGCCGGAAGTCGGGGATAAATTGAGCAGCCGTCA
CGGCCAGAAGGGCGTCATCAGTCGGGTGGTTGCCATGGACGACATGCCTT
ACACAGAGGACGGGCTGGTGCCGGACATCATCATGAATCCGCACGGATTC
CCGAGCAGAATGACTGTGGGCAAACTGATTGAACTGCTGGCCAATAAGAG
CGCTGTCATGGACGGTAACTATAGAGACAGTTCCGCATTTAGTGAGGCCG
GACACAAGGTCAATGAGGGGGATTACCAGTCGGTAATGAGGGCGCACGGG
TTCTCAATGTCGGGCAAGGAGGTGATGATGTCGGGCCGGAACGGGGCGGT
CATGGAGTGTGACGTGTACACGGGGCCCGTGTTCTACCAGCGGCTCAAGC
ACATGGTGCAGGACAAGGTACACGCGCGCGACTTCGGCAAGAACCAGCAG
TTGACACGGCAACCGAATGTCGGCCGGTCCAATGATGGAGGCCTCCGAGT
CGGTGAGATGGAGCGCGACTGTCTCATTGGTTACGGAGCTTCACAGATAC
TCAAGGAGAGGATGATGCTCAGCAGTGACCCGTTCCGAGCCTGGGTTTGT
GAGAAATGCGGCATGCTCGCTACCAGCAAGGAATGGTGCCAGATGTGCCG
GTCCAGCCAGCACGTTTCGTCGGTTGTCATGCCTTACGCCACGAAATTAT
TGATGCAAGAACTGATGACCATTCAAATCACTCCGAGGTTGACACTGTCG
CGACATGAGACAGCTGTTTTGTGAATAGATATGTTTCTTT

protein sequence of SMED30027218-orf-1

>SMED30027218-orf-1 ID=SMED30027218-orf-1|Name=SMED30027218-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1134bp
MDSKHSLVKLYNNSHSLVRHHLDSFNHFVEVEMGKIVKTHGRVDIPSSKF
FVQISNIKVDKPAIFEYQIKIPLYPQQCRVRNFTYAADVTVDIQYPGPGN
KLIKNEKFVIGRIPIMLRSKICNLYGLSNEELTRKNECIYDTGGYFITKG
TERVFLMQEQMAKNRMIIEKFKITKKGGIKVPLSEKIPDEDIVCHVTSYT
IVNKTKTTVFRNSGYFYVQNSLFHESIPLFVMFAALNMPAHKDIFESIGL
ESELHNELICSVEESIELGIFSQRQALMWLIPRIKVAMNKENKMTTSPTS
MEEEERSLLMARQEICRRVLNHVPGSVGNLSYRAKYLGLMTRRILLAENG
LISADDRDFYGIKRLEMVGTYLALMFEDKFQSLMSALQMELTKTINANKA
NQLDPTQYIRQSLITEGMFQCIFTGNWHLMRFSMARSGVTQVLNRLSYLG
TLGHLGRISSQFEKVRKISGARAIHLSQHGFVCVADTPEGEACGLVKNLA
FLVEITVNLPAEEQEQLEMFIRRSYSDDLGTFRHQSGMNLIMVNGVPIGW
TYQPVAMAAALRERRRAGLIHPHVSVYYETKMETLHVCSDGGRMVRPYII
VGNGGVSKLTRAVHQEILAGLRDWDDLVRSGIIEYIDALEGYAECLVAFE
ECQLTEQHTHLDIDPATALGVVASLIPFPHHNQSPRNTYQCAMGKQALGV
IATNQSKRCDGTQHRLVAPQRPLTMSHVGTLTNYQFLPAGQNAIVAILCF
GGYDIEDAIVINKASLERGLFKSVTSKCFTDVIKDNEFLAIPVRKDRRQH
AIDDDGTAAIGSVIRNGDIVISKIVNPVKDPVVAATEASKVMDPKPAPTC
YSGSEPTIVVEKITTFDGHYRMERVKTSQMRQPEVGDKLSSRHGQKGVIS
RVVAMDDMPYTEDGLVPDIIMNPHGFPSRMTVGKLIELLANKSAVMDGNY
RDSSAFSEAGHKVNEGDYQSVMRAHGFSMSGKEVMMSGRNGAVMECDVYT
GPVFYQRLKHMVQDKVHARDFGKNQQLTRQPNVGRSNDGGLRVGEMERDC
LIGYGASQILKERMMLSSDPFRAWVCEKCGMLATSKEWCQMCRSSQHVSS
VVMPYATKLLMQELMTIQITPRLTLSRHETAVL*

protein sequence of SMED30027218-orf-2

>SMED30027218-orf-2 ID=SMED30027218-orf-2|Name=SMED30027218-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=123bp
MDRSGSRYLSDLLELTADPAEVAQRAQVAQPVEHLSNAAPGHGEPHQMPI
AGENALEHSLSDQRLADILSRVQLIGLIGIDCLGELHLQCRHERLELVLK
HQCQIRADHFQPLDPVEIAIIR*

protein sequence of SMED30027218-orf-3

>SMED30027218-orf-3 ID=SMED30027218-orf-3|Name=SMED30027218-orf-3|organism=Schmidtea mediterranea sexual|type=polypeptide|length=133bp
MPCDELHDCQQNQNDCIQKQRIFLRAKLAISRIDPAICNVCRAEHAGSQG
HIRIDRIGERAAQRVDLQCGGVNRAGNILATTSTDVAHSEDQSGHEQGEQ
DDNEPDINGGGGTELTDGQTGDLSPRAQSRAR*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000028	Category 2 cell
PLANA:0000101	muscle cell
PLANA:0002109	X1 cell
PLANA:0002111	X2 cell
PLANA:0002142	parenchyma
PLANA:0003001	lateral region of the whole animal

Vocabulary: **INTERPRO**
Term	Definition
IPR037033	DNA-dir_RNAP_su2_hyb_sf
IPR015712	DNA-dir_RNA_pol_su2
IPR007642	RNA_pol_Rpb2_2
IPR007641	RNA_pol_Rpb2_7
IPR007120	DNA-dir_RNAP_su2_dom
IPR007647	RNA_pol_Rpb2_5
IPR007644	RNA_pol_bsu_protrusion
IPR007646	RNA_pol_Rpb2_4
IPR014724	RNA_pol_RPB2_OB-fold
IPR007645	RNA_pol_Rpb2_3
IPR007121	RNA_pol_bsu_CS

Vocabulary: **biological process**
Term	Definition
GO:0006351	transcription, DNA-templated
GO:0006383	transcription from RNA polymerase III promoter

Vocabulary: **molecular function**
Term	Definition
GO:0003899	DNA-directed 5'-3' RNA polymerase activity
GO:0003677	DNA binding
GO:0016740	transferase activity
GO:0016779	nucleotidyltransferase activity
GO:0032549	ribonucleoside binding

Vocabulary: **cellular component**
Term	Definition
GO:0005666	DNA-directed RNA polymerase III complex

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007120	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	PFAM	PF00562	RNA_pol_Rpb2_6	coord: 672..1036 e-value: 1.1E-105 score: 353.9
None	No IPR available	GENE3D	G3DSA:3.90.1800.10		coord: 1024..1127 e-value: 1.7E-36 score: 126.3
None	No IPR available	GENE3D	G3DSA:3.90.1070.20		coord: 529..590 e-value: 5.8E-6 score: 27.9
None	No IPR available	GENE3D	G3DSA:3.90.1100.10		coord: 10..166 e-value: 1.1E-8 score: 36.4
None	No IPR available	GENE3D	G3DSA:3.90.1100.10		coord: 345..528 e-value: 1.2E-24 score: 89.0
None	No IPR available	PANTHER	PTHR20856:SF7	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2	coord: 6..1128
None	No IPR available	SUPERFAMILY	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 5..1127
IPR007642	RNA polymerase Rpb2, domain 2	PFAM	PF04561	RNA_pol_Rpb2_2	coord: 185..366 e-value: 8.3E-14 score: 51.7
IPR007644	RNA polymerase, beta subunit, protrusion	PFAM	PF04563	RNA_pol_Rpb2_1	coord: 17..415 e-value: 2.5E-42 score: 145.2
IPR014724	RNA polymerase Rpb2, OB-fold	GENE3D	G3DSA:2.40.50.150		coord: 703..882 e-value: 4.2E-119 score: 399.8
IPR007646	RNA polymerase Rpb2, domain 4	PFAM	PF04566	RNA_pol_Rpb2_4	coord: 541..601 e-value: 1.2E-17 score: 63.9
IPR007645	RNA polymerase Rpb2, domain 3	PFAM	PF04565	RNA_pol_Rpb2_3	coord: 441..505 e-value: 1.7E-17 score: 63.4
IPR007641	RNA polymerase Rpb2, domain 7	PFAM	PF04560	RNA_pol_Rpb2_7	coord: 1039..1124 e-value: 5.6E-31 score: 106.8
IPR037033	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	GENE3D	G3DSA:2.40.270.10		coord: 673..1022 e-value: 4.2E-119 score: 399.8
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 6..1128
IPR015712	DNA-directed RNA polymerase, subunit 2	CDD	cd00653	RNA_pol_B_RPB2	coord: 17..1123 e-value: 0.0 score: 876.127
IPR007121	RNA polymerase, beta subunit, conserved site	PROSITE	PS01166	RNA_POL_BETA	coord: 886..898