SMED30027184

Overview
NameSMED30027184
Smed IDSMED30027184
Length (bp)3883
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30027184 (SMED30027184) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30027184 (SMED30027184) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30027184 (SMED30027184) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30027184 (SMED30027184) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30027184

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30027184h1SMcG0016837 SmedASXL_010263SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30027184h1SMcG0016837 SmedASXL_015269SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
epidermisSMED30027184h1SMcG0016837 dd_Smed_v4_8164_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30027184h1SMcG0016837 dd_Smed_v4_8164_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30027184 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001769:30506..38862 -19114
Homology
[Close]
BLAST of SMED30027184 vs. Planmine SMEST
Match: SMESG000077503.1 (SMESG000077503.1)

HSP 1 Score: 1719.52 bits (4452), Expect = 0.000e+0
Identity = 852/853 (99.88%), Postives = 853/853 (100.00%), Query Frame = 2 
Query:  164 VNEEVKKNIINKMIDRLSIIRVYDLKKWCLILVKMLSNYSASFEYLIDLFVLKSKENRLPTVVMGMKLGAIVVLHVIVKFQFKNLTNDIVKLLYFVANLVNEKVVGVIASSVLSRCIKQLSCDQFNPTMTKIFQLTLIKNNVLSKCPNLYFVLLSLKEEHKKILLRETVDLLNFQSESEVKNFINTFLTISDTEISSLFFNEFAVSNLFEIFWNLLTGCLDKEKFIYCEREVFLKCLFQTINPVPTGLIDQATAHQKLAIIDIVWKKSRIWKFFFSNLSDDKSLFQNLCKNLIVQLKSTSMHFSAVVEKLFEYFISVADKQCHFMESNVPQSFRLSQALIGLIKDSNQLTKYVDLLMKYFEENCSSDEKVFIIEQLEYSCHCTTDIHIHNTCIDKIIAIQTQELAGHLYLSDKLNRSSFSALISCIHHSVTVRNISMSEYLIYLKSVIAIVVHNLSNNSSELKTPLQIIKSLSKYIDEQLEIGYENPVIVDKVFPCFGSVICYLSLFLLSKTDLRNCEKSLNFCNQIIDWIKQCFQAANKSIGCNSLDKEIPSRKRMLSISSLCSDDENEMEKTPENYHWSFYLLDILLKIYDEDAMLMNKAVNSIVSLMIRTKTLEISAVRYLKNLILSENARRRKIIEFDLVIKLNNADSPGKDSVQYDVKLINMKGRCLNILSTIILESNDMDMIASCLFILLDICSTGDQILISQIENLVSLFKDRSKFYKDFYINGQNTIRAIDSILTLSNDTSNYENFVELASNIITGLINRTDLNEETIMYLKSMMDKNLFGSISNFQKLILQKFFMEHVEITWHLREALFECIVQPDIIRLTKYKAFCIIKNIINSGRPDRGSLV 2722
            VNEEVKKNIINKMIDRLSIIRVYDLKKWCLILVKMLSNYSASFEYLIDLFVLKSKENRLPTVVMGMKLGAIVVLHVIVKFQFKNLTNDIVKLLYFVANLVNEKVVGVIASSVLSRCIKQLSCDQFNPTMTKIFQLTLIKNNVLSKCPNLYFVLLSLKEEHKKILLRETVDLLNFQSESEVKNFINTFLTISDTEISSLFFNEFAVSNLFEIFWNLLTGCLDKEKFIYCEREVFLKCLFQTINPVPTGLIDQATAHQKLAIIDIVWKKSRIWKFFFSNLSDDKSLFQNLCKNLIVQLKSTSMHFSAVVEKLFEYFISVADKQCHFMESNVPQSFRLSQALIGLIKDSNQLTKYVDLLMKYFEENCSSDEKVFIIEQLEYSCHCTTDIHIHNTCIDKIIAIQTQELAGHLYLSDKLNRSSFSALISCIHHSVTVRNISMSEYLIYLKSVIAIVVHNLSNNSSELKTPLQIIKSLSKYIDEQLEIGYENPVIVDKVFPCFGSVICYLSLFLLSKTDLRNCEKSLNFCNQIIDWIKQCFQAANKSIGCNSLDKEIPSRKRMLSISSLCSDDENEMEKTPENYHWSFYLLDILLKIYDEDAMLMNKAVNSIVSLMIRTKTLEISAVRYLKNLILSENARRRKIIEFDLVIKLNNADSPGKDSVQYDVKLINMKGRCLNILSTIILESNDMDMIASCLFILLDICSTGDQILISQIENLVSLFKDRSKFYKDFYINGQNTIRAIDSILTLSNDTSNYENFVELASNIITGLINRTDLNEETIMYLKSMMDKNLFGSISNFQKLILQKFFMEHVEITWHLREALFECIVQPDIIRLTKYKAFCIIKNIINSGRPDRGSL+
Sbjct:   37 VNEEVKKNIINKMIDRLSIIRVYDLKKWCLILVKMLSNYSASFEYLIDLFVLKSKENRLPTVVMGMKLGAIVVLHVIVKFQFKNLTNDIVKLLYFVANLVNEKVVGVIASSVLSRCIKQLSCDQFNPTMTKIFQLTLIKNNVLSKCPNLYFVLLSLKEEHKKILLRETVDLLNFQSESEVKNFINTFLTISDTEISSLFFNEFAVSNLFEIFWNLLTGCLDKEKFIYCEREVFLKCLFQTINPVPTGLIDQATAHQKLAIIDIVWKKSRIWKFFFSNLSDDKSLFQNLCKNLIVQLKSTSMHFSAVVEKLFEYFISVADKQCHFMESNVPQSFRLSQALIGLIKDSNQLTKYVDLLMKYFEENCSSDEKVFIIEQLEYSCHCTTDIHIHNTCIDKIIAIQTQELAGHLYLSDKLNRSSFSALISCIHHSVTVRNISMSEYLIYLKSVIAIVVHNLSNNSSELKTPLQIIKSLSKYIDEQLEIGYENPVIVDKVFPCFGSVICYLSLFLLSKTDLRNCEKSLNFCNQIIDWIKQCFQAANKSIGCNSLDKEIPSRKRMLSISSLCSDDENEMEKTPENYHWSFYLLDILLKIYDEDAMLMNKAVNSIVSLMIRTKTLEISAVRYLKNLILSENARRRKIIEFDLVIKLNNADSPGKDSVQYDVKLINMKGRCLNILSTIILESNDMDMIASCLFILLDICSTGDQILISQIENLVSLFKDRSKFYKDFYINGQNTIRAIDSILTLSNDTSNYENFVELASNIITGLINRTDLNEETIMYLKSMMDKNLFGSISNFQKLILQKFFMEHVEITWHLREALFECIVQPDIIRLTKYKAFCIIKNIINSGRPDRGSLL 889

HSP 2 Score: 73.559 bits (179), Expect = 8.972e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 3 
Query:   60 MIELINSVIDNIFSPCSQNNEAEENNVAFLFSHYE 164
            MIELINSVIDNIFSPCSQNNEAEENNVAFLFSHYE
Sbjct:    1 MIELINSVIDNIFSPCSQNNEAEENNVAFLFSHYE 35
[Close]
BLAST of SMED30027184 vs. Planmine SMEST
Match: SMESG000077502.1 (SMESG000077502.1)

HSP 1 Score: 400.979 bits (1029), Expect = 8.528e-130
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 2 
Query: 2993 MISLEKLQEYDDYVSYLMRLLPSEYYKDLDVNSNISSVKAKPVKESKAMSKFQLIAQKKRHSDKLNESKILDNNSNSRKRKINDSETHVRDCTPDLKKTNSNDVNDSISVKNKGKDLKEASNTSELSXXXXXXXXXXXXLVKPSVTLSAPLTINVDKTQAVEGDKNSLKTSVNLGKQLEGXXXXXXXXXXXXXXXXXXXXXXXXXTDKQLIGXXXXXXXXXXXXXVXXXXXXXXXXXXNVELADINTNIVLDKLKKCETESVAVSSENIXXXXXXXXXXXNCTNVPMEVDH 3865
            MISLEKLQEYDDYVSYLMRLLPSEYYKDLDVNSNISSVKAKPVKESKAMSKFQLIAQKKRHSDKLNESKILDNNSNSRKRKINDSETHVRDCTPDLKKTNSNDVNDSISVKNKGKDLKEASNTSELSKIKNKKHKNKNILVKPSVTLSAPLTINVDKTQAVEGDKNSLKTSVNLGKQLEGLNKTEIKLKKHKKNKKSSVNNDKLKTDKQLIGNNEFLTNENLNTTVKHKKKKSKKSKKNVELADINTNIVLDKLKKCETESVAVSSENIKSSKKKTKKSKNCTNVPMEVDH
Sbjct:    1 MISLEKLQEYDDYVSYLMRLLPSEYYKDLDVNSNISSVKAKPVKESKAMSKFQLIAQKKRHSDKLNESKILDNNSNSRKRKINDSETHVRDCTPDLKKTNSNDVNDSISVKNKGKDLKEASNTSELSKIKNKKHKNKNILVKPSVTLSAPLTINVDKTQAVEGDKNSLKTSVNLGKQLEGLNKTEIKLKKHKKNKKSSVNNDKLKTDKQLIGNNEFLTNENLNTTVKHKKKKSKKSKKNVELADINTNIVLDKLKKCETESVAVSSENIKSSKKKTKKSKNCTNVPMEVDH 291
The following BLAST results are available for this feature:
BLAST of SMED30027184 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30027184 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30027184 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30027184 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30027184 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30027184 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30027184 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30027184 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30027184 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30027184 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30027184 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30027184 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30027184 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30027184 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000077503.18.972e-1399.88SMESG000077503.1[more]
SMESG000077502.18.528e-130100.00SMESG000077502.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30027184 ID=SMED30027184|Name=SMED30027184|organism=Schmidtea mediterranea sexual|type=transcript|length=3883bp
ACTTAAGAGTGTTCTTGTTTAAATATTCTTATTTGTGAATCAATTTCTTA
AATATTTTAATGATTGAATTAATAAATAGTGTAATTGATAATATCTTCTC
TCCCTGTAGCCAAAACAATGAGGCAGAAGAAAACAATGTTGCTTTTTTAT
TTTCTCATTATGAGTTAACGAAGAAGTTAAAAAGAACATAATAAATAAAA
TGATTGATAGATTAAGTATCATAAGAGTTTATGACTTGAAAAAGTGGTGT
TTGATTCTAGTTAAAATGTTGTCTAATTATTCTGCATCGTTTGAATATTT
GATCGATTTATTTGTGCTTAAATCTAAAGAAAATCGTCTCCCAACAGTTG
TTATGGGCATGAAATTAGGTGCAATAGTGGTTCTACACGTAATAGTTAAA
TTTCAATTTAAAAACCTAACTAATGATATTGTCAAATTACTATACTTTGT
TGCTAATTTGGTTAATGAAAAGGTTGTCGGTGTAATTGCTTCATCAGTAT
TGTCTAGGTGTATTAAACAGCTATCGTGTGACCAATTCAATCCAACAATG
ACTAAAATTTTTCAGTTGACACTAATAAAAAATAATGTACTCTCTAAATG
TCCGAATCTTTATTTCGTTTTATTATCTCTGAAAGAAGAACATAAGAAAA
TTCTATTACGGGAAACAGTAGATTTGTTAAACTTTCAATCCGAGAGTGAA
GTGAAAAATTTCATAAATACCTTTCTAACTATAAGTGACACAGAAATTAG
TTCTTTATTTTTCAATGAATTTGCTGTTTCTAATTTGTTTGAAATATTTT
GGAATCTTCTAACAGGTTGCTTAGATAAAGAAAAATTTATTTATTGCGAA
AGAGAAGTATTTTTAAAATGTCTTTTCCAAACAATCAATCCAGTTCCAAC
CGGTTTAATCGACCAAGCGACAGCGCACCAAAAGTTAGCAATAATTGATA
TTGTCTGGAAAAAATCTAGAATTTGGAAGTTTTTCTTTTCCAATTTATCC
GATGATAAATCTCTTTTTCAAAATCTCTGTAAAAATTTGATTGTCCAATT
AAAATCGACTTCGATGCATTTTAGCGCTGTTGTTGAAAAACTCTTTGAAT
ACTTCATTTCAGTTGCCGACAAACAATGTCATTTTATGGAATCAAATGTG
CCGCAAAGTTTTCGATTATCACAGGCTCTTATTGGTCTTATTAAAGATTC
AAATCAATTGACAAAATATGTCGATTTGCTCATGAAGTATTTTGAGGAAA
ACTGCAGTAGCGATGAAAAAGTCTTCATTATTGAACAATTGGAATACAGC
TGCCACTGTACAACCGATATTCACATACATAACACATGTATTGATAAAAT
AATAGCTATTCAAACACAAGAACTGGCTGGGCATTTATATTTGTCCGATA
AACTAAATCGCTCATCCTTTTCAGCACTGATTTCATGTATTCATCATTCT
GTCACTGTCAGAAATATATCCATGTCGGAATATTTGATTTATTTAAAATC
CGTTATCGCTATTGTCGTTCATAACCTATCAAATAACTCATCAGAACTGA
AAACTCCGTTGCAAATCATAAAATCCCTGTCAAAATATATCGATGAACAA
TTGGAGATCGGTTACGAAAACCCAGTAATTGTCGACAAAGTATTTCCATG
TTTCGGCTCGGTGATTTGTTATCTCAGTCTTTTTTTACTATCGAAAACCG
ACTTGAGAAATTGTGAAAAATCATTAAATTTTTGCAATCAAATTATCGAT
TGGATAAAACAGTGCTTTCAAGCGGCAAATAAATCAATCGGATGTAACAG
TTTGGACAAAGAAATTCCTAGTCGAAAACGAATGTTGTCAATTTCTTCTC
TTTGTTCTGATGATGAAAATGAAATGGAAAAAACTCCCGAAAATTATCAT
TGGAGTTTTTATTTGTTGGATATTTTATTAAAGATTTATGACGAAGATGC
AATGTTGATGAATAAGGCTGTAAACTCGATTGTCAGCTTGATGATTCGAA
CGAAAACTCTGGAAATATCGGCAGTCCGGTATCTAAAAAATTTGATTTTA
TCAGAAAATGCTCGCAGAAGGAAAATTATTGAATTTGATTTGGTTATCAA
ATTGAATAATGCAGATTCTCCTGGAAAGGATTCTGTTCAATATGATGTGA
AACTAATAAATATGAAAGGAAGGTGCTTAAATATTTTATCGACAATAATC
CTAGAAAGTAACGATATGGATATGATAGCGAGTTGCTTATTTATTTTATT
GGATATCTGTTCAACTGGTGACCAAATTTTAATTTCCCAAATCGAAAATT
TAGTATCGCTTTTTAAAGATCGCTCAAAATTTTATAAAGACTTTTATATA
AATGGCCAAAACACCATTAGAGCCATCGATTCAATTTTGACACTTTCGAA
TGATACTTCTAATTATGAAAATTTTGTTGAATTGGCGAGCAATATTATAA
CAGGATTAATAAATCGAACCGATTTAAATGAAGAAACAATTATGTATTTA
AAATCCATGATGGATAAGAATCTTTTTGGTTCTATAAGTAATTTCCAAAA
ACTGATATTGCAAAAATTTTTTATGGAACATGTCGAAATTACGTGGCACC
TAAGAGAGGCATTGTTTGAATGCATCGTCCAGCCTGATATTATACGATTG
ACAAAATATAAAGCATTTTGCATTATTAAAAATATTATAAATAGTGGCCG
ACCTGATAGAGGGAGCTTGGTCTTGCATAATTATAGTGAATTTGTTACAA
GGCTTTTTCCAATTGTAGCTAAAACTTTGTGCGCATTTAATTTCGAATCG
TTAAATGTAAAATACGCAACAATCATTTTGGAATGTTTTTTCGGCATAAT
ATTAACCAATACTGAAAGTTATAAAATCCCTGATGATTTATTGGAAAATT
TTAAAAAGAAATTTAATAATATGAATCCTGAAATAAGAAATTTGATTAAA
AATATTCTGGAAATTTATAAACATAAAAACTTTAATTTGCAGATGATTTC
ATTAGAAAAACTTCAGGAATATGATGATTATGTGTCATATTTAATGAGGT
TGTTACCATCTGAATATTATAAAGATTTAGATGTTAATTCAAATATTTCC
TCTGTAAAAGCTAAACCTGTTAAGGAATCTAAAGCTATGTCCAAATTCCA
GTTAATTGCACAGAAAAAAAGACATAGTGATAAATTAAACGAGTCTAAAA
TTTTGGATAATAATTCGAATTCGAGGAAACGCAAAATAAATGATTCTGAG
ACGCATGTAAGAGATTGTACTCCAGATTTAAAGAAAACTAACTCGAATGA
TGTGAATGATTCAATATCTGTTAAAAATAAAGGAAAAGATTTGAAAGAGG
CTAGCAATACCTCTGAATTGTCTAAAATAAAAAACAAGAAGCATAAAAAT
AAGAATATTCTGGTTAAACCTTCTGTTACATTATCTGCTCCATTGACAAT
TAATGTCGATAAAACACAAGCTGTTGAAGGGGATAAAAATAGTCTAAAAA
CCAGTGTAAATTTAGGTAAACAATTGGAAGGCTTAAATAAAACTGAAATA
AAATTAAAAAAACATAAAAAGAACAAAAAATCCTCTGTAAACAATGATAA
ATTAAAAACTGATAAACAATTAATTGGTAATAATGAATTCCTGACAAATG
AAAACTTGAATACCACAGTTAAACACAAGAAAAAGAAAAGCAAAAAGTCA
AAAAAAAATGTCGAGCTTGCTGATATCAATACTAATATTGTTCTTGATAA
ATTGAAAAAATGCGAGACTGAATCTGTAGCCGTATCATCTGAAAATATTA
AATCTAGTAAAAAGAAAACTAAGAAGTCTAAAAATTGTACAAATGTGCCA
ATGGAAGTTGATCATTAAATATATGTTGATGCG
back to top

protein sequence of SMED30027184-orf-1

>SMED30027184-orf-1 ID=SMED30027184-orf-1|Name=SMED30027184-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1223bp
MIDRLSIIRVYDLKKWCLILVKMLSNYSASFEYLIDLFVLKSKENRLPTV
VMGMKLGAIVVLHVIVKFQFKNLTNDIVKLLYFVANLVNEKVVGVIASSV
LSRCIKQLSCDQFNPTMTKIFQLTLIKNNVLSKCPNLYFVLLSLKEEHKK
ILLRETVDLLNFQSESEVKNFINTFLTISDTEISSLFFNEFAVSNLFEIF
WNLLTGCLDKEKFIYCEREVFLKCLFQTINPVPTGLIDQATAHQKLAIID
IVWKKSRIWKFFFSNLSDDKSLFQNLCKNLIVQLKSTSMHFSAVVEKLFE
YFISVADKQCHFMESNVPQSFRLSQALIGLIKDSNQLTKYVDLLMKYFEE
NCSSDEKVFIIEQLEYSCHCTTDIHIHNTCIDKIIAIQTQELAGHLYLSD
KLNRSSFSALISCIHHSVTVRNISMSEYLIYLKSVIAIVVHNLSNNSSEL
KTPLQIIKSLSKYIDEQLEIGYENPVIVDKVFPCFGSVICYLSLFLLSKT
DLRNCEKSLNFCNQIIDWIKQCFQAANKSIGCNSLDKEIPSRKRMLSISS
LCSDDENEMEKTPENYHWSFYLLDILLKIYDEDAMLMNKAVNSIVSLMIR
TKTLEISAVRYLKNLILSENARRRKIIEFDLVIKLNNADSPGKDSVQYDV
KLINMKGRCLNILSTIILESNDMDMIASCLFILLDICSTGDQILISQIEN
LVSLFKDRSKFYKDFYINGQNTIRAIDSILTLSNDTSNYENFVELASNII
TGLINRTDLNEETIMYLKSMMDKNLFGSISNFQKLILQKFFMEHVEITWH
LREALFECIVQPDIIRLTKYKAFCIIKNIINSGRPDRGSLVLHNYSEFVT
RLFPIVAKTLCAFNFESLNVKYATIILECFFGIILTNTESYKIPDDLLEN
FKKKFNNMNPEIRNLIKNILEIYKHKNFNLQMISLEKLQEYDDYVSYLMR
LLPSEYYKDLDVNSNISSVKAKPVKESKAMSKFQLIAQKKRHSDKLNESK
ILDNNSNSRKRKINDSETHVRDCTPDLKKTNSNDVNDSISVKNKGKDLKE
ASNTSELSKIKNKKHKNKNILVKPSVTLSAPLTINVDKTQAVEGDKNSLK
TSVNLGKQLEGLNKTEIKLKKHKKNKKSSVNNDKLKTDKQLIGNNEFLTN
ENLNTTVKHKKKKSKKSKKNVELADINTNIVLDKLKKCETESVAVSSENI
KSSKKKTKKSKNCTNVPMEVDH*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000429neoblast
PLANA:0002032epidermal cell
PLANA:0002109X1 cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1112..1132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1041..1060
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1041..1066
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 991..1019
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1193..1222