E3 SUMO-protein ligase RanBP2

Overview
NameE3 SUMO-protein ligase RanBP2
Smed IDSMED30027149
Length (bp)3592
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of E3 SUMO-protein ligase RanBP2 (SMED30027149) t-SNE clustered cells

Violin plots show distribution of expression levels for E3 SUMO-protein ligase RanBP2 (SMED30027149) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of E3 SUMO-protein ligase RanBP2 (SMED30027149) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for E3 SUMO-protein ligase RanBP2 (SMED30027149) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30027149

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30027149h1SMcG0004305 SmedASXL_017694SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30027149h1SMcG0004305 SmedASXL_017695SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30027149h1SMcG0004305 Contig37558uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027149h1SMcG0004305 Contig37558newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
neoblastSMED30027149h1SMcG0004305 dd_Smed_v4_8023_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30027149h1SMcG0004305 dd_Smed_v4_8646_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of E3 SUMO-protein ligase RanBP2 vs. Ensembl Human
Match: RANBP2 (RAN binding protein 2 [Source:HGNC Symbol;Acc:HGNC:9848])

HSP 1 Score: 51.9878 bits (123), Expect = 9.016e-6
Identity = 34/139 (24.46%), Postives = 67/139 (48.20%), Query Frame = 1 
Query:   10 MFSTKEEVDEHVKRILSISKSQRDRDRHYLTISKMYYDIKEFLIAKTYIDEFMKLNENSQLALKLLAKIHENLLEFDMTAKYYERLYDLY-SEKEFIFKASEFIIKCEKVNENKLKKYISILEKISPNHELYIKLKKLL 423
            M  +K +V+ ++  +   + S R +       +K+YY+ KE+ +AK YI  ++ + E    A + L  ++E     D   + Y R  +L  ++K+ + K +E + K   V + + K ++    K+ P      KLK+ L
Sbjct:    1 MRRSKADVERYIASVQGSTPSPRQKSMKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCK-NDVTDGRAKYWLERAAKLFPGSPAIYKLKEQL 138
[Close]
BLAST of E3 SUMO-protein ligase RanBP2 vs. Ensembl Zebrafish
Match: RANBP2 (si:ch1073-55a19.2 [Source:ZFIN;Acc:ZDB-GENE-081104-93])

HSP 1 Score: 56.225 bits (134), Expect = 3.593e-7
Identity = 43/230 (18.70%), Postives = 107/230 (46.52%), Query Frame = 1 
Query:   10 MFSTKEEVDEHVKRILSISKSQRDRDRHYLTISKMYYDIKEFLIAKTYIDEFMKLNENSQLALKLLAKIHENLLEFDMTAKYYERLYDLY-SEKEFIFKASEFIIKCEKVNENKLKKYISILEKISPNHELYIKLKKLLSPNATFIYTIEEINNLKIQIKSNVSDELKIRFLRILENQSGVVDSLEECKIFMDSYEILDNVDVIKLCLSVFKKFYKPDSIKYKSHYCLIL 696
            M  ++ EV+ ++  + S S  Q+ R +     +K+Y++ +EF  AK ++ E++++      A K L +++E     +     Y+R  DL  ++ + + K +E +    +  +N+ + ++    K+ P H     L++ L  +A   + + ++   ++Q++   S  +  R L++  ++    D++       +   + D +D  KL +   +++   +    K    L+L
Sbjct:    1 MRRSRAEVERYISAVQSASPGQKARPQKGFLFAKLYFEAEEFDQAKRHVSEYLRVQPKDPKAHKFLGQLYEREGNTESAVGCYKRAVDLNPAQHDLVLKVAELLCGLPE-QDNRARFWVEKAAKLLPGHPAVFNLRERLLSDAGGRHQLYDLLQSELQLRPGDS-YINCRLLQLQRSEGRHRDAVTHGLQVEERGLLRDQLDWYKLLVETLEEYLSVEQASRKVQKELLL 228
[Close]
BLAST of E3 SUMO-protein ligase RanBP2 vs. Ensembl Mouse
Match: Ranbp2 (RAN binding protein 2 [Source:MGI Symbol;Acc:MGI:894323])

HSP 1 Score: 55.4546 bits (132), Expect = 5.268e-7
Identity = 34/139 (24.46%), Postives = 69/139 (49.64%), Query Frame = 1 
Query:   10 MFSTKEEVDEHVKRILSISKSQRDRDRHYLTISKMYYDIKEFLIAKTYIDEFMKLNENSQLALKLLAKIHENLLEFDMTAKYYERLYDLY-SEKEFIFKASEFIIKCEKVNENKLKKYISILEKISPNHELYIKLKKLL 423
            M  +K +V+ ++  +   + S R++       +K+YY+ KE+ +AK YI  ++ + E    A + L  ++E     D   + Y+R  +L  ++K+ + K +E + K   V + + K ++    K+ P      KLK+ L
Sbjct:    1 MRRSKADVERYIASVQGSAPSPREKSMKGFYFAKLYYEAKEYDLAKKYISTYINVQERDPKAHRFLGLLYEVEENIDKAVECYKRSVELNPTQKDLVLKIAELLCK-NDVTDGRAKYWVERAAKLFPGSPAIYKLKEQL 138
[Close]
BLAST of E3 SUMO-protein ligase RanBP2 vs. UniProt/SwissProt
Match: sp|Q9ERU9|RBP2_MOUSE (E3 SUMO-protein ligase RanBP2 OS=Mus musculus OX=10090 GN=Ranbp2 PE=1 SV=2)

HSP 1 Score: 55.4546 bits (132), Expect = 3.685e-6
Identity = 34/139 (24.46%), Postives = 69/139 (49.64%), Query Frame = 1 
Query:   10 MFSTKEEVDEHVKRILSISKSQRDRDRHYLTISKMYYDIKEFLIAKTYIDEFMKLNENSQLALKLLAKIHENLLEFDMTAKYYERLYDLY-SEKEFIFKASEFIIKCEKVNENKLKKYISILEKISPNHELYIKLKKLL 423
            M  +K +V+ ++  +   + S R++       +K+YY+ KE+ +AK YI  ++ + E    A + L  ++E     D   + Y+R  +L  ++K+ + K +E + K   V + + K ++    K+ P      KLK+ L
Sbjct:    1 MRRSKADVERYIASVQGSAPSPREKSMKGFYFAKLYYEAKEYDLAKKYISTYINVQERDPKAHRFLGLLYEVEENIDKAVECYKRSVELNPTQKDLVLKIAELLCK-NDVTDGRAKYWVERAAKLFPGSPAIYKLKEQL 138
[Close]
BLAST of E3 SUMO-protein ligase RanBP2 vs. TrEMBL
Match: A0A0B6YRU6 (TPR_REGION domain-containing protein (Fragment) OS=Arion vulgaris OX=1028688 GN=ORF33229 PE=4 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.333e-13
Identity = 46/144 (31.94%), Postives = 82/144 (56.94%), Query Frame = 1 
Query:   10 MFSTKEEVDEHVKRILSISKSQRDRDRHYLTISKMYYDIKEFLIAKTYIDEFMKLNENSQLALKLLAKIHENLLEFDMTAKYYERLYDLY----SEKEFIFKASEFIIKCEKVNE-NKLKKYISILEKISPNHELYIKLKKLLS 426
            MF  K++VD+H+  ILS  + +++R      I+++YYDIKE+ IAK Y+  F+ + EN+  A +L+ +I+E+L E +   + Y+R  +L     S K+ + K  E    CE+  +  ++K +    EK  P  ++  KLK  ++
Sbjct:    1 MFKRKQDVDKHISSILSRKRDEKERQAQGFQIARLYYDIKEYAIAKRYLSGFLNVRENAPTAHQLMGEINESLGEKEEAIENYKRALNLASYGSSNKQLVLKICELY--CEQGTDVERMKYWCDQCEKFYPKSDVVFKLKAQIA 142
[Close]
BLAST of E3 SUMO-protein ligase RanBP2 vs. TrEMBL
Match: A0A1S3J7B0 (E3 SUMO-protein ligase RanBP2 OS=Lingula unguis OX=7574 GN=LOC106170853 PE=4 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.296e-11
Identity = 44/139 (31.65%), Postives = 81/139 (58.27%), Query Frame = 1 
Query:    4 MNMFSTKEEVDEHVKRILSISKSQRDRDRHYLTISKMYYDIKEFLIAKTYIDEFMKLNENSQLALKLLAKIHENLLEFDMTAKYYERLYDL-YSEKEFIFKASEFIIKCEKVNENKLKKYISILEKISPNHELYIKLKK 417
            M+++ TK  VD++V  ILS  K++++R+   L I++ YY++KE+ +AK Y   ++ + E    A KL+ +IHE L + D     Y++  +L  ++K+ + K  +   K  KV+ +  K +    E++ PNHE   +LK+
Sbjct:    1 MSVYQTKSHVDKNVSMILSKLKTEKERNSRGLIIARQYYEVKEYEMAKRYCALYLTVKEQYAPAHKLMGQIHEALGQLDRAVACYKKCLELDGAQKDLVLKICQLYSKL-KVDPDVAKYWAERAERLFPNHEAIFQLKE 138
[Close]
BLAST of E3 SUMO-protein ligase RanBP2 vs. TrEMBL
Match: A0A1S3JZV8 (RANBP2-like and GRIP domain-containing protein 5/6 OS=Lingula unguis OX=7574 GN=LOC106177627 PE=4 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.092e-11
Identity = 46/155 (29.68%), Postives = 88/155 (56.77%), Query Frame = 1 
Query:    4 MNMFSTKEEVDEHVKRILSISKSQRDRDRHYLTISKMYYDIKEFLIAKTYIDEFMKLNENSQLALKLLAKIHENLLEFDMTAKYYERLYDL-YSEKEFIFKASEFIIKCEKVNENKLKKYISILEKISPNHELYIKLKKLLS-PNATFIYTIEEI 462
            M+++ TK  VD++V  ILS  K++++R+   L I++ YY++KE+ +AK Y   ++ + E    A KL+ +IHE L + D     Y++  +L  ++K+ + K  +   K  KV+ +  K +    E++ PNHE   +LK+ +   N    + +E++
Sbjct:    1 MSVYQTKSHVDKNVSMILSKLKTEKERNSRGLIIARQYYEVKEYEMAKRYCALYLTVKEQYAPAHKLMGQIHEALGQLDRAVACYKKCLELDGAQKDLVLKICQLYSKL-KVDPDVAKYWAERAERLFPNHEAIFQLKEQIHMTNGNTAHDLEDL 154
[Close]
BLAST of E3 SUMO-protein ligase RanBP2 vs. TrEMBL
Match: A0A0A1XND7 (RANBP2-like and GRIP domain-containing protein 1 OS=Zeugodacus cucurbitae OX=28588 GN=RGPD1 PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.747e-10
Identity = 47/187 (25.13%), Postives = 101/187 (54.01%), Query Frame = 1 
Query:   10 MFSTKEEVDEHVKRILSISKSQRDRDRHYLTISKMYYDIKEFLIAKTYIDEFMKLNENSQLALKLLAKIHENLLEFDMTAKYYERLYDLYSEK-EFIFKASEFIIKCEKVNENKLKKYISILEKISPNHELYIKLK-KLLSPNATFIYTIEEINNLKIQIKSNVSDELKIRFLRILENQSGVVDSLE 564
            M+ TK+EVD HV+  LS  +S+ +R     TI+K+YY I E+  A+ Y+  ++ + E++  A KLL + ++ L + +   + ++R   L S++ + +    + +++ + +N +K K +  + E     H+    L+ KL++        +E++   +I  + N   +L++R +R    Q+ V+D+ +
Sbjct:    1 MYKTKKEVDAHVRTALSKLRSESERQLRSFTIAKLYYKINEYSTAEQYLCSYLSVKEDNDQAHKLLGQCYQRLKKPEKALQSFQRSLQLNSKQPDVLADVCQLLLEDKNMNASKAKYWCELAESEKVQHDAVFSLRLKLINKENLETNQVEDLIQKEISARPN-DVQLRVRLMRNYIEQNKVLDAFK 186
[Close]
BLAST of E3 SUMO-protein ligase RanBP2 vs. TrEMBL
Match: A0A0K8UKN5 (RANBP2-like and GRIP domain-containing protein 1 OS=Bactrocera latifrons OX=174628 GN=RGPD1_1 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.587e-9
Identity = 57/242 (23.55%), Postives = 127/242 (52.48%), Query Frame = 1 
Query:   10 MFSTKEEVDEHVKRILSISKSQRDRDRHYLTISKMYYDIKEFLIAKTYIDEFMKLNENSQLALKLLAKIHENLLEFDMTAKYYERLYDLYSEK-EFIFKASEFIIKCEKVNENKLKKYISILEKISPNHELYIKLK-KLLSPNATFIYTIEEINNLKIQIKSNVSDELKIRFLRILENQSGVVDSLEECKIF-MDSYEILDN----VDVIKLCLSVFKKFYKPDSIKYKSHYCLILIALFRK 714
            M+ TK+EVD HV+  LS  +S+ +R      I+K+YY I E+  A+ Y+  ++ + E++  A KLL + ++ L + +   + ++R   L S++ E +    + ++  + +N +K K +  + E     H+    L+ KL++ +      +E++   +I  + N   +L++R +R    Q+ V+D+ +    F M+ ++   +     +++ L L+ ++  + P++ K    + L++I L R+
Sbjct:    1 MYKTKKEVDAHVRTALSKLRSESERQLRSFIIAKLYYKIGEYSTAEQYLCSYLNVKEDNDQAHKLLGQCYQRLKKPEKALQSFQRSLQLNSKQPEVLADVCQLLLDDKNLNVSKAKYWCELAESEKVQHDAVFSLRLKLMNKDNLESNQVEDLILKEINARPN-DVQLRVRLMRNYIEQNKVLDAFKYVHNFEMNQHDNFSSSSEWYNIVWLVLNKYE--HMPNTKKDWEFWLLMIICLERQ 239
[Close]
BLAST of E3 SUMO-protein ligase RanBP2 vs. Ensembl Sea Lamprey
Match: si:ch1073-55a19.2 (RAN binding protein 2 [Source:HGNC Symbol;Acc:HGNC:9848])

HSP 1 Score: 52.7582 bits (125), Expect = 6.866e-7
Identity = 43/183 (23.50%), Postives = 64/183 (34.97%), Query Frame = 1 
Query: 2995 QWACSKCYSMNDDNVSSCPVCKSNNRTVKSIPNIDLSKFT--QNKWECPTCACMNDDKDIICPSCKYVKINNNT----VKFGQSGIKFKETFKFGSQLDS------ISTGSTSSPGFLFXXXXXXXXXXKTQYTFGASNKLTSAPNFGNSNSY----------WTCE-CTTENKDDRTICIAC 3474
            QW C  C   ND + +SC  C++        PN     F+  + +W+C TCA  N      C +C+  K + +T    V         +    FGSQ           T +  +   L   +           +     + + AP FGN   +          W C+ C   NK D   C AC
Sbjct: 1445 QWDCEICVVRNDGSATSCVACQT--------PNPGAPPFSKKEGEWDCDTCAVRNKPDLAACAACQMRKPDASTSIPRVAESSQASAVRNLTGFGSQFSKKEGEWDCETCAVRNKPHLAACAACQMRKPDASTSIPRVAESSQAPAFGNLMGFGSQFSKKEGEWDCDTCAVRNKPDLAACAAC 1619
[Close]
BLAST of E3 SUMO-protein ligase RanBP2 vs. Ensembl Medaka
Match: si:ch1073-55a19.2 (RANBP2-like and GRIP domain-containing protein 8 [Source:NCBI gene;Acc:101160447])

HSP 1 Score: 65.0846 bits (157), Expect = 5.159e-10
Identity = 39/141 (27.66%), Postives = 76/141 (53.90%), Query Frame = 1 
Query:   10 MFSTKEEVDEHVKRILSISKSQRDRDRHYLTISKMYYDIKEFLIAKTYIDEFMKLNENSQLALKLLAKIHENLLEFDMTAKYYERLYDLY-SEKEFIFKASEFIIKCEKVNENKLKKYISILEKISPNHELYIKLK-KLLS 426
            M  +K EVD +V  +LS S + +++       +K+Y D KE+ +AK ++ E++K+ E    A K L  ++E   E +     Y+R  DL  ++++ + K +E ++  E+ N+++ + ++    K+ P       LK +LLS
Sbjct:    1 MRRSKVEVDRYVSSVLSTSTALKEKPVKGFLFAKLYLDAKEYELAKRHVSEYLKVQERDPKAHKFLGHLYEREGELNKAVGCYKRSVDLNPAQRDLVLKVAELLVSKEE-NDSRAEFWVDKAAKLLPGSPAVFNLKERLLS 140
[Close]
BLAST of E3 SUMO-protein ligase RanBP2 vs. Ensembl Medaka
Match: si:ch1073-55a19.2 (RANBP2-like and GRIP domain-containing protein 8 [Source:NCBI gene;Acc:101160447])

HSP 1 Score: 65.0846 bits (157), Expect = 5.163e-10
Identity = 39/141 (27.66%), Postives = 76/141 (53.90%), Query Frame = 1 
Query:   10 MFSTKEEVDEHVKRILSISKSQRDRDRHYLTISKMYYDIKEFLIAKTYIDEFMKLNENSQLALKLLAKIHENLLEFDMTAKYYERLYDLY-SEKEFIFKASEFIIKCEKVNENKLKKYISILEKISPNHELYIKLK-KLLS 426
            M  +K EVD +V  +LS S + +++       +K+Y D KE+ +AK ++ E++K+ E    A K L  ++E   E +     Y+R  DL  ++++ + K +E ++  E+ N+++ + ++    K+ P       LK +LLS
Sbjct:    1 MRRSKVEVDRYVSSVLSTSTALKEKPVKGFLFAKLYLDAKEYELAKRHVSEYLKVQERDPKAHKFLGHLYEREGELNKAVGCYKRSVDLNPAQRDLVLKVAELLVSKEE-NDSRAEFWVDKAAKLLPGSPAVFNLKERLLS 140
[Close]
BLAST of E3 SUMO-protein ligase RanBP2 vs. Planmine SMEST
Match: SMESG000031772.1 (SMESG000031772.1)

HSP 1 Score: 1965.66 bits (5091), Expect = 0.000e+0
Identity = 1000/1007 (99.30%), Postives = 1004/1007 (99.70%), Query Frame = 1 
Query:  166 MKLNENSQLALKLLAKIHENLLEFDMTAKYYERLYDLYSEKEFIFKASEFIIKCEKVNENKLKKYISILEKISPNHELYIKLKKLLSPNATFIYTIEEINNLKIQIKSNVSDELKIRFLRILENQSGVVDSLEECKIFMDSYEILDNVDVIKLCLSVFKKFYKPDSIKYKSHYCLILIALFRKRTKICDFDRESYXXXXXXXXKTDKIDPNNAVIFQLFVYYLTSLVHFRLTQDNKLTIEMISAILRGYLIANSLSNGDKIFFSPVISRWLRSQVSFIKSISNHMISESGQLKNDNSISLLINFTWNLSTSDLELSQQFFENFSVSQSNMKSTIEDDLQCLMNHYGDLKLICWQIMCYNKFPTKSEFDYQLHPIACKFISSISNKVFSKVPLESTCRRSPENISKIDIITFLIGSLLSYQKSFNSLKIVDKSLGYSFELWQEIRIPEVVHKCWEALCDFTLLGRRNTSIGSLKELLKSGIESMQLTDNQMSDFLKLQLGKILFDCAKHVDTERDLLNKRGVAFYTSVIIPDKTISSFKSLPISTYANSQSIISRQKSFTHAIKIKEMFDTEYIGDEVLNQWKLEAAVVIIDSRLQRRITTVVEYEELDRLIETIEDSGLLSPQLEFMKAKIYAARANSIKCKEIPTLNNGEYNQLLKSAQDSANDALDTSDQLSSPQKSKFESAVKEFLNTMASVRPHDNYSLMEFSVAGETCNSNRAYNHSLXXXXXXXXXXXXXXXXIAIDIFKIDQLQNAVIGLTSSHEKINSEMNYKINNVSQVVDNKLLSINDKIEYENNCQNKLFQSLVSKIDCLNSKTDELIVKTDGLELKAKYDQEEIYNLTNDVSKLCKTVNNLRIENSQLKNELEMINRTTSITENVLRPEINKITSLIDSNFETICNNANKYTYRMKSIKIESNLKVPALKKEPVLSSETAESNVSVESHVTQWACSKCYSMNDDNVSSCPVCKSNNRTVKSIPNIDLSKFTQNKWECPTCACMNDDKDIICPSCK 3186
            MKLNENSQLALKLLAKIHENLLEFDMTAKYYERLYDLYSEKEFIFKASEFIIKCEKVNENKLKKYISILEKISPNHELYIKLKKLLSPNATFIYTIEEINNLKIQIKSNVSDELKIRFLRILENQSGVVDSLEECKIFMDSYEILDNVDVIKLCLSVFKKFYKPDSIKYKSHYCLILIALFRKRTKICDFDRESYLLDLLNLLKTDKIDPNNAVIFQLFVYYLTSLVHFRLTQDNKLTIEMISAILRGYLIANSLSNGDKIFFSPVISRWLRSQVSFIKSISNHMISESGQLKNDNSISLLINFTWNLSTSDLELSQQFFENFSVSQSNMKSTIEDDLQCLMNHYGDLKLICWQIMCYNKFPTKSEFDYQLHPIACKFISSISNKVFSKVPLESTCRRSPENISKIDIITFLIGSLLSYQKSFNSLKIVDKSLGYSFELWQEIRIPEVVHKCWEALCDFTLLGRRNTSIGSLKELLKSGIESMQLTDNQMSDFLKLQLGKILFDCAKHVDTERDLLNKRGVAFYTSVIIPDKTISSFKSLPISTYANSQSIISRQKSFTHAIKIKEMFDTEYIGDEVLNQWKLEAAVVIIDSRLQRRITTVVEYEELDRLIETIEDSGLLSPQLEFMKAKIYAARANSIKCKEIPTLNNGEYNQLLKSAQDSANDALDTSDQLSSPQKSKFESAVKEFLNTMASVRPHDNYSLMEFSVAGETCNSNRAYNHSLDSTDFFNQSSFSDNQSIAIDIFKIDQLQNAVIGLTSSHEKINSEMNYKINNVSQVVDNKLLSINDKIEYENNCQNKLFQSLVSKIDCLNSKTDELIVKTDGLELKAKYDQEEIYNLTNDVSKLCKTVNNLRIENSQLKNELEMINRTTSITENVLRPEINKITSLIDSNFETICNNANKYTYRMKSIKIESNLKVPALKKEPVLSSETAESNVSVESHVTQWACSKCYSMNDDNVSSCPVCKSNNRTVKSIPNIDLSKFTQNKWECPTCACMND+  + CP+C+
Sbjct:    1 MKLNENSQLALKLLAKIHENLLEFDMTAKYYERLYDLYSEKEFIFKASEFIIKCEKVNENKLKKYISILEKISPNHELYIKLKKLLSPNATFIYTIEEINNLKIQIKSNVSDELKIRFLRILENQSGVVDSLEECKIFMDSYEILDNVDVIKLCLSVFKKFYKPDSIKYKSHYCLILIALFRKRTKICDFDRESYLLDLLNLLKTDKIDPNNAVIFQLFVYYLTSLVHFRLTQDNKLTIEMISAILRGYLIANSLSNGDKIFFSPVISRWLRSQVSFIKSISNHMISESGQLKNDNSISLLINFTWNLSTSDLELSQQFFENFSVSQSNMKSTIEDDLQCLMNHYGDLKLICWQIMCYNKFPTKSEFDYQLHPIACKFISSISNKVFSKVPLESTCRRSPENISKIDIITFLIGSLLSYQKSFNSLKIVDKSLGYSFELWQEIRIPEVVHKCWEALCDFTLLGRRNTSIGSLKELLKSGIESMQLTDNQMSDFLKLQLGKILFDCAKHVDTERDLLNKRGVAFYTSVIIPDKTISSFKSLPISTYANSQSIISRQKSFTHAIKIKEMFDTEYIGDEVLNQWKLEAAVVIIDSRLQRRITTVVEYEELDRLIETIEDSGLLSPQLEFMKAKIYAARANSIKCKEIPTLNNGEYNQLLKSAQDSANDALDTSDQLSSPQKSKFESAVKEFLNTMASVRPHDNYSLMEFSVAGETCNSNRAYNHSLDSTDFFNQSSFSDNQSIAIDIFKIDQLQNAVIGLTSSHEKINSEMNYKINNVSQVVDNKLLSINDKIEYENNCQNKLFQSLVSKIDCLNSKTDELIVKTDGLELKAKYDQEEIYNLTNDVSKLCKTVNNLRIENSQLKNELEMINRTTSITENVLRPEINKITSLIDSNFETICNNANKYTYRMKSIKIESNLKVPALKKEPVLSSETAESNVSVESHVTQWACSKCYSMNDDNVSSCPVCKSNNRTVKSIPNIDLSKFTQNKWECPTCACMNDNCQLNCPACQ 1007

HSP 2 Score: 300.442 bits (768), Expect = 1.005e-83
Identity = 150/175 (85.71%), Postives = 157/175 (89.71%), Query Frame = 1 
Query: 2995 QWACSKCYSMNDDNVSSCPVCKSNNRTVKSIPNI----DLSKFTQNKWECPTCACMNDDKDIICPSCKYVKINNNTVKFGQSGIKFKETFKFGSQLDSISTGSTSSPGFLFXXXXXXXXXXKTQYTFGASNKLTSAPNFGNSNSYWTCECTTENKDDRTICIACGIGKNKIVQSV 3507
            +W C  C  MNDD  S CP CK++N   K+ P +    DLSKF++NKWECPTCACMNDDKDIICPSCKYVKINNNTVKFGQSGIKFKETFKFGSQLDSISTGSTSSPGFLFGSSRTSSSTGKTQYTFGASNKLTSAPNFGNSNSYWTCECTTENKDDRTICIACGIGKNKIVQSV
Sbjct: 1029 KWECPTCACMNDDKQSLCPSCKTSNPAQKNSPKLQNQFDLSKFSKNKWECPTCACMNDDKDIICPSCKYVKINNNTVKFGQSGIKFKETFKFGSQLDSISTGSTSSPGFLFGSSRTSSSTGKTQYTFGASNKLTSAPNFGNSNSYWTCECTTENKDDRTICIACGIGKNKIVQSV 1203
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BLAST of E3 SUMO-protein ligase RanBP2 vs. Planmine SMEST
Match: SMESG000031772.1 (SMESG000031772.1)

HSP 1 Score: 1918.28 bits (4968), Expect = 0.000e+0
Identity = 975/982 (99.29%), Postives = 979/982 (99.69%), Query Frame = 1 
Query:  241 MTAKYYERLYDLYSEKEFIFKASEFIIKCEKVNENKLKKYISILEKISPNHELYIKLKKLLSPNATFIYTIEEINNLKIQIKSNVSDELKIRFLRILENQSGVVDSLEECKIFMDSYEILDNVDVIKLCLSVFKKFYKPDSIKYKSHYCLILIALFRKRTKICDFDRESYXXXXXXXXKTDKIDPNNAVIFQLFVYYLTSLVHFRLTQDNKLTIEMISAILRGYLIANSLSNGDKIFFSPVISRWLRSQVSFIKSISNHMISESGQLKNDNSISLLINFTWNLSTSDLELSQQFFENFSVSQSNMKSTIEDDLQCLMNHYGDLKLICWQIMCYNKFPTKSEFDYQLHPIACKFISSISNKVFSKVPLESTCRRSPENISKIDIITFLIGSLLSYQKSFNSLKIVDKSLGYSFELWQEIRIPEVVHKCWEALCDFTLLGRRNTSIGSLKELLKSGIESMQLTDNQMSDFLKLQLGKILFDCAKHVDTERDLLNKRGVAFYTSVIIPDKTISSFKSLPISTYANSQSIISRQKSFTHAIKIKEMFDTEYIGDEVLNQWKLEAAVVIIDSRLQRRITTVVEYEELDRLIETIEDSGLLSPQLEFMKAKIYAARANSIKCKEIPTLNNGEYNQLLKSAQDSANDALDTSDQLSSPQKSKFESAVKEFLNTMASVRPHDNYSLMEFSVAGETCNSNRAYNHSLXXXXXXXXXXXXXXXXIAIDIFKIDQLQNAVIGLTSSHEKINSEMNYKINNVSQVVDNKLLSINDKIEYENNCQNKLFQSLVSKIDCLNSKTDELIVKTDGLELKAKYDQEEIYNLTNDVSKLCKTVNNLRIENSQLKNELEMINRTTSITENVLRPEINKITSLIDSNFETICNNANKYTYRMKSIKIESNLKVPALKKEPVLSSETAESNVSVESHVTQWACSKCYSMNDDNVSSCPVCKSNNRTVKSIPNIDLSKFTQNKWECPTCACMNDDKDIICPSCK 3186
            MTAKYYERLYDLYSEKEFIFKASEFIIKCEKVNENKLKKYISILEKISPNHELYIKLKKLLSPNATFIYTIEEINNLKIQIKSNVSDELKIRFLRILENQSGVVDSLEECKIFMDSYEILDNVDVIKLCLSVFKKFYKPDSIKYKSHYCLILIALFRKRTKICDFDRESYLLDLLNLLKTDKIDPNNAVIFQLFVYYLTSLVHFRLTQDNKLTIEMISAILRGYLIANSLSNGDKIFFSPVISRWLRSQVSFIKSISNHMISESGQLKNDNSISLLINFTWNLSTSDLELSQQFFENFSVSQSNMKSTIEDDLQCLMNHYGDLKLICWQIMCYNKFPTKSEFDYQLHPIACKFISSISNKVFSKVPLESTCRRSPENISKIDIITFLIGSLLSYQKSFNSLKIVDKSLGYSFELWQEIRIPEVVHKCWEALCDFTLLGRRNTSIGSLKELLKSGIESMQLTDNQMSDFLKLQLGKILFDCAKHVDTERDLLNKRGVAFYTSVIIPDKTISSFKSLPISTYANSQSIISRQKSFTHAIKIKEMFDTEYIGDEVLNQWKLEAAVVIIDSRLQRRITTVVEYEELDRLIETIEDSGLLSPQLEFMKAKIYAARANSIKCKEIPTLNNGEYNQLLKSAQDSANDALDTSDQLSSPQKSKFESAVKEFLNTMASVRPHDNYSLMEFSVAGETCNSNRAYNHSLDSTDFFNQSSFSDNQSIAIDIFKIDQLQNAVIGLTSSHEKINSEMNYKINNVSQVVDNKLLSINDKIEYENNCQNKLFQSLVSKIDCLNSKTDELIVKTDGLELKAKYDQEEIYNLTNDVSKLCKTVNNLRIENSQLKNELEMINRTTSITENVLRPEINKITSLIDSNFETICNNANKYTYRMKSIKIESNLKVPALKKEPVLSSETAESNVSVESHVTQWACSKCYSMNDDNVSSCPVCKSNNRTVKSIPNIDLSKFTQNKWECPTCACMND+  + CP+C+
Sbjct:    1 MTAKYYERLYDLYSEKEFIFKASEFIIKCEKVNENKLKKYISILEKISPNHELYIKLKKLLSPNATFIYTIEEINNLKIQIKSNVSDELKIRFLRILENQSGVVDSLEECKIFMDSYEILDNVDVIKLCLSVFKKFYKPDSIKYKSHYCLILIALFRKRTKICDFDRESYLLDLLNLLKTDKIDPNNAVIFQLFVYYLTSLVHFRLTQDNKLTIEMISAILRGYLIANSLSNGDKIFFSPVISRWLRSQVSFIKSISNHMISESGQLKNDNSISLLINFTWNLSTSDLELSQQFFENFSVSQSNMKSTIEDDLQCLMNHYGDLKLICWQIMCYNKFPTKSEFDYQLHPIACKFISSISNKVFSKVPLESTCRRSPENISKIDIITFLIGSLLSYQKSFNSLKIVDKSLGYSFELWQEIRIPEVVHKCWEALCDFTLLGRRNTSIGSLKELLKSGIESMQLTDNQMSDFLKLQLGKILFDCAKHVDTERDLLNKRGVAFYTSVIIPDKTISSFKSLPISTYANSQSIISRQKSFTHAIKIKEMFDTEYIGDEVLNQWKLEAAVVIIDSRLQRRITTVVEYEELDRLIETIEDSGLLSPQLEFMKAKIYAARANSIKCKEIPTLNNGEYNQLLKSAQDSANDALDTSDQLSSPQKSKFESAVKEFLNTMASVRPHDNYSLMEFSVAGETCNSNRAYNHSLDSTDFFNQSSFSDNQSIAIDIFKIDQLQNAVIGLTSSHEKINSEMNYKINNVSQVVDNKLLSINDKIEYENNCQNKLFQSLVSKIDCLNSKTDELIVKTDGLELKAKYDQEEIYNLTNDVSKLCKTVNNLRIENSQLKNELEMINRTTSITENVLRPEINKITSLIDSNFETICNNANKYTYRMKSIKIESNLKVPALKKEPVLSSETAESNVSVESHVTQWACSKCYSMNDDNVSSCPVCKSNNRTVKSIPNIDLSKFTQNKWECPTCACMNDNCQLNCPACQ 982

HSP 2 Score: 300.442 bits (768), Expect = 1.187e-83
Identity = 150/175 (85.71%), Postives = 157/175 (89.71%), Query Frame = 1 
Query: 2995 QWACSKCYSMNDDNVSSCPVCKSNNRTVKSIPNI----DLSKFTQNKWECPTCACMNDDKDIICPSCKYVKINNNTVKFGQSGIKFKETFKFGSQLDSISTGSTSSPGFLFXXXXXXXXXXKTQYTFGASNKLTSAPNFGNSNSYWTCECTTENKDDRTICIACGIGKNKIVQSV 3507
            +W C  C  MNDD  S CP CK++N   K+ P +    DLSKF++NKWECPTCACMNDDKDIICPSCKYVKINNNTVKFGQSGIKFKETFKFGSQLDSISTGSTSSPGFLFGSSRTSSSTGKTQYTFGASNKLTSAPNFGNSNSYWTCECTTENKDDRTICIACGIGKNKIVQSV
Sbjct: 1004 KWECPTCACMNDDKQSLCPSCKTSNPAQKNSPKLQNQFDLSKFSKNKWECPTCACMNDDKDIICPSCKYVKINNNTVKFGQSGIKFKETFKFGSQLDSISTGSTSSPGFLFGSSRTSSSTGKTQYTFGASNKLTSAPNFGNSNSYWTCECTTENKDDRTICIACGIGKNKIVQSV 1178
The following BLAST results are available for this feature:
BLAST of E3 SUMO-protein ligase RanBP2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 1
Match NameE-valueIdentityDescription
RANBP29.016e-624.46RAN binding protein 2 [Source:HGNC Symbol;Acc:HGNC... [more]
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BLAST of E3 SUMO-protein ligase RanBP2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of E3 SUMO-protein ligase RanBP2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of E3 SUMO-protein ligase RanBP2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
RANBP23.593e-718.70si:ch1073-55a19.2 [Source:ZFIN;Acc:ZDB-GENE-081104... [more]
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BLAST of E3 SUMO-protein ligase RanBP2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of E3 SUMO-protein ligase RanBP2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Ranbp25.268e-724.46RAN binding protein 2 [Source:MGI Symbol;Acc:MGI:8... [more]
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BLAST of E3 SUMO-protein ligase RanBP2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 1
Match NameE-valueIdentityDescription
sp|Q9ERU9|RBP2_MOUSE3.685e-624.46E3 SUMO-protein ligase RanBP2 OS=Mus musculus OX=1... [more]
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BLAST of E3 SUMO-protein ligase RanBP2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0B6YRU64.333e-1331.94TPR_REGION domain-containing protein (Fragment) OS... [more]
A0A1S3J7B02.296e-1131.65E3 SUMO-protein ligase RanBP2 OS=Lingula unguis OX... [more]
A0A1S3JZV84.092e-1129.68RANBP2-like and GRIP domain-containing protein 5/6... [more]
A0A0A1XND74.747e-1025.13RANBP2-like and GRIP domain-containing protein 1 O... [more]
A0A0K8UKN54.587e-923.55RANBP2-like and GRIP domain-containing protein 1 O... [more]
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BLAST of E3 SUMO-protein ligase RanBP2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of E3 SUMO-protein ligase RanBP2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
si:ch1073-55a19.26.866e-723.50RAN binding protein 2 [Source:HGNC Symbol;Acc:HGNC... [more]
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BLAST of E3 SUMO-protein ligase RanBP2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of E3 SUMO-protein ligase RanBP2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of E3 SUMO-protein ligase RanBP2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
si:ch1073-55a19.25.159e-1027.66RANBP2-like and GRIP domain-containing protein 8 [... [more]
si:ch1073-55a19.25.163e-1027.66RANBP2-like and GRIP domain-containing protein 8 [... [more]
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BLAST of E3 SUMO-protein ligase RanBP2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000031772.11.005e-8399.30SMESG000031772.1[more]
SMESG000031772.11.187e-8399.29SMESG000031772.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30027149 ID=SMED30027149|Name=E3 SUMO-protein ligase RanBP2|organism=Schmidtea mediterranea sexual|type=transcript|length=3592bp
AAAATGAATATGTTTTCTACAAAAGAAGAAGTTGATGAACATGTTAAAAG
AATTTTAAGTATATCAAAAAGTCAACGAGATAGAGATCGTCATTATTTGA
CAATTAGTAAAATGTATTATGATATCAAAGAATTTTTAATTGCAAAAACT
TATATTGATGAGTTTATGAAATTAAATGAAAATTCGCAGTTAGCTTTAAA
GTTACTAGCGAAAATTCACGAAAATTTATTGGAATTCGACATGACTGCTA
AGTACTACGAACGTTTATATGACTTATATTCTGAAAAAGAGTTTATTTTT
AAAGCTTCCGAATTCATCATTAAATGTGAAAAAGTAAATGAGAACAAACT
GAAGAAATACATTAGTATTTTGGAAAAAATAAGCCCTAATCACGAATTAT
ATATCAAATTAAAAAAATTATTATCTCCAAATGCTACTTTTATTTACACA
ATCGAAGAGATTAATAATTTAAAAATACAAATCAAATCAAATGTAAGTGA
TGAATTAAAAATTCGTTTTTTAAGAATTCTTGAAAACCAAAGTGGCGTTG
TTGATTCTTTAGAAGAATGTAAAATATTTATGGATTCTTATGAAATTCTC
GATAATGTTGATGTCATTAAATTATGCCTATCGGTTTTCAAAAAGTTTTA
CAAACCCGATTCAATTAAGTACAAGTCTCATTATTGTTTAATTCTCATTG
CTCTTTTCCGAAAGCGAACAAAAATTTGCGATTTCGATCGTGAATCTTAT
TTATTGGATTTATTAAATTTGCTGAAAACTGACAAAATCGACCCAAACAA
TGCGGTTATATTCCAATTGTTTGTATACTATCTAACGAGTCTCGTTCATT
TTCGATTGACACAGGATAATAAGTTGACAATCGAGATGATCTCTGCAATT
CTTCGTGGATATTTAATAGCAAATTCATTATCAAATGGAGATAAAATATT
TTTCTCTCCAGTAATTTCTCGTTGGTTACGCAGTCAAGTGAGTTTCATAA
AATCCATATCGAATCACATGATTTCCGAGAGTGGTCAGCTTAAAAACGAT
AATTCAATTTCCCTACTTATTAATTTCACTTGGAATTTATCTACATCCGA
TTTGGAGTTATCTCAACAGTTTTTCGAAAATTTCTCCGTCAGCCAATCGA
ACATGAAATCGACAATTGAGGATGATTTACAATGTTTGATGAATCATTAT
GGTGATTTGAAATTGATTTGTTGGCAAATTATGTGCTACAACAAATTCCC
GACCAAGTCCGAATTCGATTATCAATTGCACCCGATCGCGTGCAAATTCA
TTTCATCCATTTCCAATAAAGTATTCTCCAAAGTTCCATTGGAATCGACT
TGCCGAAGAAGTCCGGAAAATATCTCAAAAATCGATATAATCACATTTCT
TATTGGTTCATTGTTGAGCTATCAGAAATCGTTCAATTCTTTGAAAATCG
TCGACAAATCTCTCGGTTACTCTTTTGAATTGTGGCAGGAAATCCGAATT
CCTGAAGTTGTTCACAAATGCTGGGAAGCTCTCTGTGATTTTACTCTACT
TGGCAGGCGCAACACGTCGATTGGTTCATTGAAAGAGCTTTTAAAATCCG
GGATTGAATCAATGCAATTGACGGATAATCAGATGTCGGATTTTCTGAAA
CTACAACTGGGGAAAATTCTCTTTGATTGTGCGAAACATGTCGACACAGA
AAGGGATTTGTTGAATAAACGTGGGGTTGCGTTCTACACATCGGTCATCA
TACCGGACAAAACCATTTCATCGTTCAAAAGCCTACCGATCTCAACATAT
GCCAATTCACAAAGCATCATTAGCCGGCAGAAAAGTTTCACTCATGCAAT
TAAAATCAAAGAAATGTTCGATACTGAATATATTGGTGATGAGGTGCTCA
ACCAATGGAAACTCGAGGCAGCCGTTGTTATTATTGATTCGCGATTACAA
CGGAGAATTACCACCGTTGTCGAATATGAGGAATTGGACAGATTGATCGA
AACCATTGAAGATTCCGGTTTGTTGTCACCACAACTAGAGTTTATGAAAG
CGAAAATCTACGCAGCACGGGCAAATTCCATCAAATGCAAAGAAATTCCC
ACATTAAATAATGGTGAATATAATCAACTGTTAAAATCAGCTCAGGATAG
CGCTAATGATGCGTTGGATACTTCTGATCAGCTTAGCTCACCACAGAAAT
CCAAATTTGAGTCTGCAGTTAAGGAATTTTTAAACACAATGGCATCTGTT
AGACCACATGATAACTATTCTCTAATGGAGTTCAGTGTTGCTGGAGAAAC
TTGCAATAGCAATCGTGCTTATAACCATTCATTGGATTCTACTGATTTCT
TCAATCAATCATCGTTTTCTGATAACCAATCAATAGCGATCGATATTTTC
AAAATCGACCAACTGCAAAATGCTGTCATTGGACTCACTTCATCTCATGA
AAAAATAAACAGTGAAATGAATTACAAAATCAATAATGTCTCACAAGTTG
TAGATAATAAATTGTTATCAATAAACGATAAAATCGAATACGAGAATAAT
TGCCAAAATAAACTCTTCCAAAGTTTGGTGTCTAAAATTGACTGTTTAAA
CAGTAAAACCGATGAGTTGATTGTTAAAACCGATGGATTGGAATTGAAGG
CAAAATACGACCAAGAAGAAATTTACAATTTGACAAATGATGTTAGCAAA
TTGTGCAAAACCGTCAATAATCTGAGAATTGAGAATAGTCAATTGAAAAA
TGAGTTAGAAATGATCAACCGTACCACTAGTATAACTGAAAATGTTCTTC
GCCCAGAAATCAATAAAATTACCAGTTTGATCGACTCGAATTTTGAAACG
ATCTGCAACAATGCCAATAAGTATACATATAGGATGAAAAGTATCAAGAT
TGAATCAAATTTAAAAGTTCCCGCCTTAAAAAAGGAGCCAGTATTGAGCA
GTGAAACCGCAGAGTCTAACGTCTCTGTTGAATCGCATGTAACGCAGTGG
GCCTGTTCCAAATGTTACTCCATGAATGATGACAACGTTTCATCTTGCCC
AGTCTGTAAATCCAATAATAGAACAGTTAAATCAATTCCAAATATCGATT
TATCTAAATTCACTCAAAACAAATGGGAATGTCCGACATGTGCTTGCATG
AATGATGATAAAGACATAATTTGTCCATCATGCAAATACGTTAAAATCAA
TAACAATACTGTAAAATTCGGCCAATCAGGCATTAAATTCAAAGAAACTT
TTAAATTCGGTTCACAGCTCGATTCCATCTCTACGGGTTCCACATCTAGT
CCTGGATTCTTGTTTGGTAGTTCGAGAACCTCGTCGAGCACCGGTAAAAC
TCAATACACATTTGGTGCATCGAATAAATTGACCAGTGCACCCAATTTCG
GAAATTCCAACAGCTATTGGACATGCGAATGCACAACTGAGAACAAGGAT
GACAGAACGATTTGCATTGCCTGTGGAATTGGTAAAAATAAAATCGTTCA
ATCAGTCGAGGAAGAAGATAAAGACTACGAAGATTCTGATAGCGATAGTG
AAAACACAAATAGTGACAGTGAAAACACAAACAGTGATGGTG
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protein sequence of SMED30027149-orf-1

>SMED30027149-orf-1 ID=SMED30027149-orf-1|Name=SMED30027149-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1197bp
KMNMFSTKEEVDEHVKRILSISKSQRDRDRHYLTISKMYYDIKEFLIAKT
YIDEFMKLNENSQLALKLLAKIHENLLEFDMTAKYYERLYDLYSEKEFIF
KASEFIIKCEKVNENKLKKYISILEKISPNHELYIKLKKLLSPNATFIYT
IEEINNLKIQIKSNVSDELKIRFLRILENQSGVVDSLEECKIFMDSYEIL
DNVDVIKLCLSVFKKFYKPDSIKYKSHYCLILIALFRKRTKICDFDRESY
LLDLLNLLKTDKIDPNNAVIFQLFVYYLTSLVHFRLTQDNKLTIEMISAI
LRGYLIANSLSNGDKIFFSPVISRWLRSQVSFIKSISNHMISESGQLKND
NSISLLINFTWNLSTSDLELSQQFFENFSVSQSNMKSTIEDDLQCLMNHY
GDLKLICWQIMCYNKFPTKSEFDYQLHPIACKFISSISNKVFSKVPLEST
CRRSPENISKIDIITFLIGSLLSYQKSFNSLKIVDKSLGYSFELWQEIRI
PEVVHKCWEALCDFTLLGRRNTSIGSLKELLKSGIESMQLTDNQMSDFLK
LQLGKILFDCAKHVDTERDLLNKRGVAFYTSVIIPDKTISSFKSLPISTY
ANSQSIISRQKSFTHAIKIKEMFDTEYIGDEVLNQWKLEAAVVIIDSRLQ
RRITTVVEYEELDRLIETIEDSGLLSPQLEFMKAKIYAARANSIKCKEIP
TLNNGEYNQLLKSAQDSANDALDTSDQLSSPQKSKFESAVKEFLNTMASV
RPHDNYSLMEFSVAGETCNSNRAYNHSLDSTDFFNQSSFSDNQSIAIDIF
KIDQLQNAVIGLTSSHEKINSEMNYKINNVSQVVDNKLLSINDKIEYENN
CQNKLFQSLVSKIDCLNSKTDELIVKTDGLELKAKYDQEEIYNLTNDVSK
LCKTVNNLRIENSQLKNELEMINRTTSITENVLRPEINKITSLIDSNFET
ICNNANKYTYRMKSIKIESNLKVPALKKEPVLSSETAESNVSVESHVTQW
ACSKCYSMNDDNVSSCPVCKSNNRTVKSIPNIDLSKFTQNKWECPTCACM
NDDKDIICPSCKYVKINNNTVKFGQSGIKFKETFKFGSQLDSISTGSTSS
PGFLFGSSRTSSSTGKTQYTFGASNKLTSAPNFGNSNSYWTCECTTENKD
DRTICIACGIGKNKIVQSVEEEDKDYEDSDSDSENTNSDSENTNSDG
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
Vocabulary: molecular function
TermDefinition
GO:0008270zinc ion binding
GO:0016874ligase activity
GO:0046872metal ion binding
Vocabulary: cellular component
TermDefinition
GO:0005622intracellular
Vocabulary: biological process
TermDefinition
GO:0046907intracellular transport