SMED30027108

Overview
NameSMED30027108
Smed IDSMED30027108
Length (bp)1449
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30027108 (SMED30027108) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30027108 (SMED30027108) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30027108 (SMED30027108) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30027108 (SMED30027108) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30027108

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30027108SMESG000027849.1 SMESG000054598.1 SMESG000054597.1 dd_Smed_v4_6188_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027108SMESG000027849.1 SMESG000054598.1 SMESG000054597.1 dd_Smed_v4_6188_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30027108SMESG000027849.1 SMESG000054598.1 SMESG000054597.1 dd_Smed_v4_6188_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30027108SMESG000027849.1 SMESG000054598.1 SMESG000054597.1 dd_Smed_v4_6188_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027108SMESG000027849.1 SMESG000054598.1 SMESG000054597.1 dd_Smed_v4_6188_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30027108SMESG000027849.1 SMESG000054598.1 SMESG000054597.1 dd_Smed_v4_6188_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30027108SMESG000027849.1 SMESG000054598.1 SMESG000054597.1 dd_Smed_v4_6188_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30027108 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.008586:1172..2708 -7111
Homology
BLAST of SMED30027108 vs. Ensembl Fly
Match: CG9175 (gene:FBgn0031779 transcript:FBtr0079212)

HSP 1 Score: 60.8474 bits (146), Expect = 1.130e-9
Identity = 41/184 (22.28%), Postives = 86/184 (46.74%), Query Frame = 3
Query:  393 IKISRNGSIFCIISNSNKIQIYDFKTFFDNDNNSCSVIE----SFDKAQMIIKDISPDASSLITQSCTSNLC--ILWDIEKNNKTVELIFSKESQIVDCLFGRIEAVSHIYNIYAIYN--SNVS-NKYWITVWNCSNHSIKNSLCIESRICNSICVSNEGRYVAVNCFDSKTIDIFISFNLQKL 917
            ++IS NG +        K++++ F         +    E     F     +I  IS DA  L+    +  L   + W   K  +  + +F +      C +G +EA    Y ++ I N    V   + ++  W+C++  ++ ++ I+  + +S+ V ++GR+VAV    S ++ ++I+F+LQ++
Sbjct:  192 VRISGNGRLMATGGTDGKLRVWTFPQMTLAAELAAHSKEIDDLDFSPDSKLIASISKDAQGLVWDLASGQLQHKLQW---KTPEGAKYLFKR------CRYGTVEAQKDNYRLFTIANPLGKVGKQRGFLQHWDCASGQLRQAVAIDESL-SSLAVRDDGRFVAVGTMFSGSVSMYIAFSLQRV 365          
BLAST of SMED30027108 vs. Ensembl Fly
Match: CG9175 (gene:FBgn0031779 transcript:FBtr0079211)

HSP 1 Score: 60.8474 bits (146), Expect = 1.130e-9
Identity = 41/184 (22.28%), Postives = 86/184 (46.74%), Query Frame = 3
Query:  393 IKISRNGSIFCIISNSNKIQIYDFKTFFDNDNNSCSVIE----SFDKAQMIIKDISPDASSLITQSCTSNLC--ILWDIEKNNKTVELIFSKESQIVDCLFGRIEAVSHIYNIYAIYN--SNVS-NKYWITVWNCSNHSIKNSLCIESRICNSICVSNEGRYVAVNCFDSKTIDIFISFNLQKL 917
            ++IS NG +        K++++ F         +    E     F     +I  IS DA  L+    +  L   + W   K  +  + +F +      C +G +EA    Y ++ I N    V   + ++  W+C++  ++ ++ I+  + +S+ V ++GR+VAV    S ++ ++I+F+LQ++
Sbjct:  192 VRISGNGRLMATGGTDGKLRVWTFPQMTLAAELAAHSKEIDDLDFSPDSKLIASISKDAQGLVWDLASGQLQHKLQW---KTPEGAKYLFKR------CRYGTVEAQKDNYRLFTIANPLGKVGKQRGFLQHWDCASGQLRQAVAIDESL-SSLAVRDDGRFVAVGTMFSGSVSMYIAFSLQRV 365          
BLAST of SMED30027108 vs. TrEMBL
Match: A0A2C9KTU5 (WD_REPEATS_REGION domain-containing protein OS=Biomphalaria glabrata OX=6526 GN=106059635 PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.056e-11
Identity = 61/216 (28.24%), Postives = 106/216 (49.07%), Query Frame = 3
Query:  540 DISPDASSLITQSCTSNLCILWDIEKNNKTVELIF----SKESQIVDCLFGRIEAVSHIYNIYAI---YNSNVSNKYWITVWNCSNHSIKNSLCIESRICNSICVSNEGRYVAVNCFDSKTIDIFISFNLQKLYSYSNV------SCDDSKWLCHFLPLSFSMDQFQ--HEFDLLSLYTSKNSTSVFWLYESMKQNYSVIWPISAAVVLIFSLFYV 1142
            DISPD S ++T S   N C+ W+     K  +LI+    S+  +   C +G IE     +NIY +      +  +  +I++W+ S  S+K +    + + ++  VSN+G Y+ V    S ++ ++ISF+LQ+LY           S D       FLP S +        +F+LLS+ ++ N+  +    E  +     +W I A + +IF++FYV
Sbjct:  134 DISPDGSKIVTISRDKNGCV-WNTSNGKKVTDLIWNYSTSQPYRFKACKYGLIEGKRDKFNIYTVNIPVTRSAKSVCYISLWDSSKFSLKKTASAGTEVISAFAVSNDGIYLGVGSI-SGSVSVYISFSLQRLYHVQEAHSIFVTSVD-------FLPCSEAARAVTGNQDFNLLSV-SADNTIRLHQCPE--RSTIHPVWLIFALIFIIFAMFYV 337          
BLAST of SMED30027108 vs. TrEMBL
Match: A0A2C9KTJ8 (WD_REPEATS_REGION domain-containing protein OS=Biomphalaria glabrata OX=6526 GN=106059635 PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.338e-11
Identity = 63/217 (29.03%), Postives = 107/217 (49.31%), Query Frame = 3
Query:  540 DISPDASSLITQSCTSNLCILWDIEKNNKTVELIF----SKESQIVDCLFGRIEAVSHIYNIYAIYNSNVSNKY----WITVWNCSNHSIKNSLCIESRICNSICVSNEGRYVAVNCFDSKTIDIFISFNLQKLYSYSNV------SCDDSKWLCHFLPLSFSMDQFQ--HEFDLLSLYTSKNSTSVFWLYESMKQNYSVIWPISAAVVLIFSLFYV 1142
            DISPD S ++T S   N C+ W+     K  +LI+    S+  +   C +G IE     +NIY + N  V+       +I++W+ S  S+K +    + + ++  VSN+G Y+ V    S ++ ++ISF+LQ+LY           S D       FLP S +        +F+LLS+ ++ N+  +    E  +     +W I A + +IF++FYV
Sbjct:  205 DISPDGSKIVTISRDKNGCV-WNTSNGKKVTDLIWNYSTSQPYRFKACKYGLIEGKRDKFNIYTV-NIPVTRSAKSVCYISLWDSSKFSLKKTASAGTEVISAFAVSNDGIYLGVGSI-SGSVSVYISFSLQRLYHVQEAHSIFVTSVD-------FLPCSEAARAVTGNQDFNLLSV-SADNTIRLHQCPE--RSTIHPVWLIFALIFIIFAMFYV 408          
BLAST of SMED30027108 vs. TrEMBL
Match: A0A1I8QAQ8 (WD_REPEATS_REGION domain-containing protein OS=Stomoxys calcitrans OX=35570 GN=106092653 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.035e-10
Identity = 54/214 (25.23%), Postives = 98/214 (45.79%), Query Frame = 3
Query:  366 EFVGINSTS--IKISRNGSIFCIISNSNKIQIYDFKTFFDNDNNSCSVIESFDKAQMIIKDISPDASSLITQSCTSNLCILWDIEKNNKTVELIFSKESQIV----DCLFGRIEAVSHIYNIYAIYN--SNVS-NKYWITVWNCSNHSIKNSLCIESRICNSICVSNEGRYVAVNCFDSKTIDIFISFNLQKLYSYSNVSCDDSKWLCHFLPLS 980
            +F+G +     ++IS NG I         ++++ F       +      E  D       DISPD+  ++T S      ++WDI  + K  +L ++           C +G IEA    Y ++ I N    V   + ++  W+C+N  ++ ++ IE  +  S+ V ++GR+VAV    S +I ++I F+LQ++    N        L  FLP++
Sbjct:  190 DFLGADPLQRVVRISPNGHIMATGGTDGHLRVWSFPQMLKTADIEAHTREIDDI------DISPDSKYIVTIS-KDGQGLVWDIATSKKIFDLKWATPEGTKYLFKRCRYGTIEAQKDKYRLFTITNPLGKVGKQRGFLQQWDCTNGKLRLAVPIEESLA-SLAVRDDGRFVAVGTMFSGSISMYIGFSLQRVLHIPNAHSMFVTGL-QFLPVT 394          
BLAST of SMED30027108 vs. TrEMBL
Match: A0A1I8MZN2 (WD_REPEATS_REGION domain-containing protein OS=Musca domestica OX=7370 GN=101899554 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.957e-9
Identity = 51/203 (25.12%), Postives = 96/203 (47.29%), Query Frame = 3
Query:  393 IKISRNGSIFCIISNSNKIQIYDFKTFFDNDNNSCSVIESFDKAQMIIKDISPDASSLITQSCTSNLCILWDIEKNNKTVELIFSKESQIV----DCLFGRIEAVSHIYNIYAIYN--SNVS-NKYWITVWNCSNHSIKNSLCIESRICNSICVSNEGRYVAVNCFDSKTIDIFISFNLQKLYSYSNVSCDDSKWLCHFLPLS 980
            ++IS NG I         ++++ F         +  ++    +   I  DISPD+  +IT S      ++WDI  + K  +L ++           C +G IEA    Y ++ I N    V   + ++  W+C+N  ++ ++ I+  +  S+ V ++GR+VAV    S +I ++I+F+LQ++    N        L  FLP++
Sbjct:  196 VRISPNGHIMATGGTDGHLRVWSFPQML----KTADIVAHSKEIDDI--DISPDSKYIITIS-KDGQGLMWDIATSKKVFDLKWATPEGAKYLFKRCRYGTIEAQRDKYRLFTITNPLGKVGKQRGFLQQWDCTNGKLRLAVGIDESLA-SLAVRDDGRFVAVGTMFSGSISMYIAFSLQRVLHIPNAHSMFVTGL-QFLPVT 389          
BLAST of SMED30027108 vs. TrEMBL
Match: A0A0L0BW54 (WD_REPEATS_REGION domain-containing protein OS=Lucilia cuprina OX=7375 GN=FF38_13692 PE=4 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.760e-8
Identity = 51/203 (25.12%), Postives = 92/203 (45.32%), Query Frame = 3
Query:  393 IKISRNGSIFCIISNSNKIQIYDFKTFFDNDNNSCSVIESFDKAQMIIKDISPDASSLITQSCTSNLCILWDIEKNNKTVELIFSKESQIV----DCLFGRIEAVSHIYNIYAIYN--SNVS-NKYWITVWNCSNHSIKNSLCIESRICNSICVSNEGRYVAVNCFDSKTIDIFISFNLQKLYSYSNVSCDDSKWLCHFLPLS 980
            ++IS NG I C       ++++ F     + +     IE+  K ++   DISPD S  I         I+WD+  + K  +L +            C +G IEA    Y ++ I N    V   + ++  W  +   I+ ++ I+  +  S+ V ++GR+VAV    + +I ++I F+LQ++    N        L  FLP++
Sbjct:  201 VRISPNGHIMCTGGTDGHLRVWSFPQMIKSAD-----IEAHTK-EIDDIDISPD-SKFIVTIAKDGQGIVWDVATSKKVYDLKWDTPEGAKYLFKRCRYGTIEAQRDKYRLFTITNPLGKVGKQRGYLQQWESTTGKIRLAVAIDESLA-SLAVRDDGRFVAVGTMFTGSISMYIGFSLQRVLLIPNAHSMFVTGL-QFLPVT 394          
BLAST of SMED30027108 vs. Planmine SMEST
Match: SMESG000027849.1 (SMESG000027849.1)

HSP 1 Score: 519.235 bits (1336), Expect = 0.000e+0
Identity = 261/262 (99.62%), Postives = 261/262 (99.62%), Query Frame = 3
Query:  360 MREFVGINSTSIKISRNGSIFCIISNSNKIQIYDFKTFFDNDNNSCSVIESFDKAQMIIKDISPDASSLITQSCTSNLCILWDIEKNNKTVELIFSKESQIVDCLFGRIEAVSHIYNIYAIYNSNVSNKYWITVWNCSNHSIKNSLCIESRICNSICVSNEGRYVAVNCFDSKTIDIFISFNLQKLYSYSNVSCDDSKWLCHFLPLSFSMDQFQHEFDLLSLYTSKNSTSVFWLYESMKQNYSVIWPISAAVVLIFSLFYVA 1145
            MREFVGINSTSIKISRNGSIFCIISNSNKIQIYDFKTFFDN NNSCSVIESFDKAQMIIKDISPDASSLITQSCTSNLCILWDIEKNNKTVELIFSKESQIVDCLFGRIEAVSHIYNIYAIYNSNVSNKYWITVWNCSNHSIKNSLCIESRICNSICVSNEGRYVAVNCFDSKTIDIFISFNLQKLYSYSNVSCDDSKWLCHFLPLSFSMDQFQHEFDLLSLYTSKNSTSVFWLYESMKQNYSVIWPISAAVVLIFSLFYVA
Sbjct:    1 MREFVGINSTSIKISRNGSIFCIISNSNKIQIYDFKTFFDNVNNSCSVIESFDKAQMIIKDISPDASSLITQSCTSNLCILWDIEKNNKTVELIFSKESQIVDCLFGRIEAVSHIYNIYAIYNSNVSNKYWITVWNCSNHSIKNSLCIESRICNSICVSNEGRYVAVNCFDSKTIDIFISFNLQKLYSYSNVSCDDSKWLCHFLPLSFSMDQFQHEFDLLSLYTSKNSTSVFWLYESMKQNYSVIWPISAAVVLIFSLFYVA 262          
The following BLAST results are available for this feature:
BLAST of SMED30027108 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027108 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027108 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
CG91751.130e-922.28gene:FBgn0031779 transcript:FBtr0079212[more]
CG91751.130e-922.28gene:FBgn0031779 transcript:FBtr0079211[more]
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BLAST of SMED30027108 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027108 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027108 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027108 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027108 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2C9KTU51.056e-1128.24WD_REPEATS_REGION domain-containing protein OS=Bio... [more]
A0A2C9KTJ81.338e-1129.03WD_REPEATS_REGION domain-containing protein OS=Bio... [more]
A0A1I8QAQ87.035e-1025.23WD_REPEATS_REGION domain-containing protein OS=Sto... [more]
A0A1I8MZN23.957e-925.12WD_REPEATS_REGION domain-containing protein OS=Mus... [more]
A0A0L0BW547.760e-825.12WD_REPEATS_REGION domain-containing protein OS=Luc... [more]
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BLAST of SMED30027108 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027108 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027108 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027108 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027108 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027108 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000027849.10.000e+099.62SMESG000027849.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30027108 ID=SMED30027108|Name=SMED30027108|organism=Schmidtea mediterranea sexual|type=transcript|length=1449bp
GCATGCAATGTAAGAAAATTGATTTTAAGCTGCTTTTTAATTTAGATAAC
ATTAAAATTATTTCTACTTCAAATAACGAGACAATAATATCATCGTACAG
TTTACATGAAAAAGAAATTAAAGTTTTAATTTATAATTATCATGAAAAGA
ATTGTGAATTGGAAAAACCTAAAGTATCGTCAATATTTTTAAATGATGAT
CTAAAATGTTACGAATTGATATCAAATATTAGTGAAATAGTTATATACGC
TTTAGTGAAAGACTCAGTGTTTAAATATGTTTATTCCAAAAATGACATAA
AAAAGCATATTTGTGCTTCTGGAGATAATGTTTGTCAAAATTCATTTTAT
ATTGACGCAATGCGAGAATTTGTTGGGATTAACTCGACATCTATTAAAAT
AAGTAGAAATGGATCAATATTTTGTATTATTTCAAATAGTAACAAAATAC
AAATTTATGACTTCAAAACGTTTTTTGATAATGACAATAATTCATGTTCT
GTAATAGAAAGTTTCGACAAGGCTCAGATGATAATTAAAGATATTTCACC
GGATGCAAGTTCATTAATTACGCAATCTTGTACTTCAAACCTATGCATAT
TGTGGGACATTGAGAAAAACAACAAAACAGTGGAATTAATTTTTTCAAAA
GAAAGCCAAATTGTTGATTGTTTATTTGGTAGAATTGAAGCCGTTTCGCA
TATTTATAATATTTATGCTATTTATAACAGTAATGTATCCAATAAGTATT
GGATTACCGTTTGGAATTGTTCAAATCATTCCATTAAAAATTCGCTATGC
ATTGAATCTAGAATATGCAATTCGATATGTGTAAGCAATGAAGGTCGTTA
TGTGGCAGTTAATTGTTTCGACAGTAAAACAATTGATATTTTTATCAGTT
TTAATCTTCAGAAATTATATTCATATTCAAATGTATCGTGTGACGATAGC
AAATGGCTTTGTCATTTTCTGCCATTATCGTTTTCCATGGATCAATTTCA
GCACGAATTTGATTTGCTTTCTCTTTATACATCGAAAAATTCGACTTCAG
TTTTTTGGTTGTATGAATCTATGAAACAAAACTATTCTGTTATTTGGCCG
ATTTCCGCTGCTGTTGTTTTAATATTCTCACTTTTTTATGTTGCTTTTCA
GTTTGGGCTATAATTATTGATTTTTCTTTTTGATGTAATTACTGTTATGT
TATTGCAATTGGTTATTTTTAATTGTTATTTTTCAACATTGGCAATTTAG
GTATTTATGTTTTATAGATTTGCTTTTTGTTGACTGACTGAAATATTTGG
ATGATTATTTTCGAAATATTATAGAATAATTATACACTGATGCTTCAACA
AAGGGTTTTTAAAAGGCTTAATATTGTGTACAAGCTTATAAATGGAATTT
TGTGTTATTGAGAACGTTTGGTTTGAGAAAAATAATATAAAGATTTTGT
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protein sequence of SMED30027108-orf-1

>SMED30027108-orf-1 ID=SMED30027108-orf-1|Name=SMED30027108-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=387bp
MQCKKIDFKLLFNLDNIKIISTSNNETIISSYSLHEKEIKVLIYNYHEKN
CELEKPKVSSIFLNDDLKCYELISNISEIVIYALVKDSVFKYVYSKNDIK
KHICASGDNVCQNSFYIDAMREFVGINSTSIKISRNGSIFCIISNSNKIQ
IYDFKTFFDNDNNSCSVIESFDKAQMIIKDISPDASSLITQSCTSNLCIL
WDIEKNNKTVELIFSKESQIVDCLFGRIEAVSHIYNIYAIYNSNVSNKYW
ITVWNCSNHSIKNSLCIESRICNSICVSNEGRYVAVNCFDSKTIDIFISF
NLQKLYSYSNVSCDDSKWLCHFLPLSFSMDQFQHEFDLLSLYTSKNSTSV
FWLYESMKQNYSVIWPISAAVVLIFSLFYVAFQFGL*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000101muscle cell
PLANA:0002032epidermal cell
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3DG3DSA:2.130.10.10coord: 36..334
e-value: 2.4E-13
score: 52.2
NoneNo IPR availableSUPERFAMILYSSF82171DPP6 N-terminal domain-likecoord: 127..356
NoneNo IPR availableTMHMMTMhelixcoord: 361..383