SMED30027092

Overview
NameSMED30027092
Smed IDSMED30027092
Length (bp)6415
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30027092 (SMED30027092) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30027092 (SMED30027092) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30027092 (SMED30027092) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30027092 (SMED30027092) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30027092

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 15

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30027092SMESG000032651.1 SMESG000032650.1 SmedASXL_016915SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
pharynxSMED30027092SMESG000078236.1 SMESG000032651.1 dd_Smed_v4_4949_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30027092SMESG000078236.1 SMESG000032651.1 dd_Smed_v4_4949_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027092SMESG000078236.1 SMESG000032651.1 dd_Smed_v4_4949_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30027092SMESG000078236.1 SMESG000032651.1 dd_Smed_v4_4949_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30027092SMESG000078236.1 SMESG000032651.1 dd_Smed_v4_4949_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult colorimetric in situ hybridization evidence
muscle cellSMED30027092SMESG000078236.1 SMESG000032651.1 dd_Smed_v4_4949_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30027092SMESG000078236.1 SMESG000032651.1 dd_Smed_v4_4949_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027092SMESG000078236.1 SMESG000032651.1 dd_Smed_v4_4949_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027092SMESG000032651.1 SMESG000032650.1 Contig35113uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027092SMESG000032651.1 SMESG000032650.1 Contig35113newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027092SMESG000032651.1 Contig39017uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027092SMESG000032651.1 Contig39017newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
head regionSMED30027092SMESG000078236.1 SMESG000032651.1 dd_Smed_v6_4949_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
head regionSMED30027092 dd_Smed_v6_20640_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30027092 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000175:26910..34882 -31286
Homology
BLAST of SMED30027092 vs. Planmine SMEST
Match: SMESG000032651.1 (SMESG000032651.1)

HSP 1 Score: 730.324 bits (1884), Expect = 0.000e+0
Identity = 351/357 (98.32%), Postives = 351/357 (98.32%), Query Frame = 1
Query:  115 MKLAVKYFLSACLLLNAVISISGNQTHLRVNTIPEFPFPAGSNFTIEIVEKENGKQIYGNSHDILIIQISDSSKKQQAIFEYIYKDMIDMEIKGDFMRIPTWTKFKSQIIATMLFDRSANDKTLEIFQITASNNNEKRNQMKTLNKNSRIYQSKISLLIDPKLELLITSMDGRKFELMLDEWGKASCRAFDGVPMEKPYWDKNFDLKMRNPKYSPERNERTIEIYASILDHMKELSCTAGRTRAAVKINVLHHPTQILLDPELGSFVENGTTTYCSSIDGFPVPEVRWHFISGPDDPGRYFNISKDGRKLLLKSETPIGTVWKFNCTASNILPRTKGSFNRTVSFEIGRKLTSNFRL 1185
            MKLAVKYFLSACLLLNAVISISGNQTHLRVNTIPEFPFPAGSNFTIEIVEKENGKQIYGNSHDILIIQISDSSKKQQAIFEYIYKDMIDMEIKGDFMRIPTWTKFKSQIIATMLFDRSANDKTLEIFQITASNNNEKRNQMKTLNKNSRIYQSKISLLIDPKLELLITSMDGRKFELMLDEWGKASCRAFDGVPMEKPYWDKNFDLKMRNPKYSPERNERTIEIYASILDHMKELSCTAGRTRAAVKINVLHHPTQILLDPELGSFVENGTTTYCSSIDGFPVPEVRWHFISGPDDPGRYFNISKDGRKLLLKSETPIGTVWKFNCTASNILPRTKGSFNRTVSFEIGR     F L
Sbjct:    1 MKLAVKYFLSACLLLNAVISISGNQTHLRVNTIPEFPFPAGSNFTIEIVEKENGKQIYGNSHDILIIQISDSSKKQQAIFEYIYKDMIDMEIKGDFMRIPTWTKFKSQIIATMLFDRSANDKTLEIFQITASNNNEKRNQMKTLNKNSRIYQSKISLLIDPKLELLITSMDGRKFELMLDEWGKASCRAFDGVPMEKPYWDKNFDLKMRNPKYSPERNERTIEIYASILDHMKELSCTAGRTRAAVKINVLHHPTQILLDPELGSFVENGTTTYCSSIDGFPVPEVRWHFISGPDDPGRYFNISKDGRKLLLKSETPIGTVWKFNCTASNILPRTKGSFNRTVSFEIGRPQEGLFGL 357          

HSP 2 Score: 355.91 bits (912), Expect = 1.080e-107
Identity = 178/182 (97.80%), Postives = 180/182 (98.90%), Query Frame = 1
Query: 4174 VFYSDLTFQIMVGVAVMGAIIIFCIAMVFIVCLARRSCVDQNATRNNRRNGVPAKHVVEKKTLDSEQVTLLPPGAPQNHLDLANTGSGLPLPPPEYQLIIDNSEVKPAIPLEPQVSTEPYAEVTYAELNTSDLPMKESRGHKFXXXXXXSDEYNQQVIYSQIIGTISTPDPGQRTYMNQDSV 4719
            +F  +LTFQIMVGVAVMGAIIIFCIAMVFIVCLARRSCVDQNATRNNRRNGVPAKHVVEKKTLDSEQVTLLPPGAPQNHLDLANTGSGLPLPPPEYQLIIDNSEVKPAIPLEPQVSTEPYAEVTYAELNTSDLPMKESRGHKFNNNNNNSDEYNQQVIYSQIIGTISTPDPGQRTYMNQDSV
Sbjct:  354 LFGLNLTFQIMVGVAVMGAIIIFCIAMVFIVCLARRSCVDQNATRNNRRNGVPAKHVVEKKTLDSEQVTLLPPGAPQNHLDLANTGSGLPLPPPEYQLIIDNSEVKPAIPLEPQVSTEPYAEVTYAELNTSDLPMKESRGHKFNNNNNNSDEYNQQVIYSQIIGTISTPDPGQRTYMNQDSV 535          
BLAST of SMED30027092 vs. Planmine SMEST
Match: SMESG000032650.1 (SMESG000032650.1)

HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0
Identity = 380/381 (99.74%), Postives = 380/381 (99.74%), Query Frame = -1
Query: 5195 MPALKGFIIALEDNCSINRINHLEMTSLLISLTVCYLXXXXXXXXXIMLATMMLICMYRINTRATFYTIYFWILYIQLFKLFINVTFYEMQYILIFGSGMTALFMAFVIYSYNIFFYIYMSVDAIFFYLLAGLSVLNLIRLQKPFQIINKHIIHLLCSVIVFLAFLFNMIILYNTQAFICTNSGKIGFIYTTQLWKLPILLCLVFFHIIIPWVTSIFTTIYVYKLSRRLGSKSSNLKRXXXXXXXXXXXXXAPTITTLVSWILHRDIFLYQSLAMIMSDIGQYTSVLFILYILFVTDAKFRKLFLRFNPRLTESVEXXXXXXXXXXXXXXXXXXXXXXTNDEVVTNKVXXXXXXXXXXXXXXXSRPSKMEIKSSEVSKERA 6337
            MPALKGFIIALEDNCSINRINHLEMTSLLISLTVCYLIIIIIANIVIMLATMMLICMYRINTRATFYTIYFWILYIQLFKLFINVTFYEMQYILIFGSGMTALFMAFVIYSYNIFFYIYMSVDAIFFYLLAGLSVLNLIRLQKPFQIINKHIIHL CSVIVFLAFLFNMIILYNTQAFICTNSGKIGFIYTTQLWKLPILLCLVFFHIIIPWVTSIFTTIYVYKLSRRLGSKSSNLKRLALFINLIFILLAAPTITTLVSWILHRDIFLYQSLAMIMSDIGQYTSVLFILYILFVTDAKFRKLFLRFNPRLTESVESKYYTSNSRYKSTKTSYSTETWTNDEVVTNKVLKPPKSFSKSFISLLSRPSKMEIKSSEVSKERA
Sbjct:    1 MPALKGFIIALEDNCSINRINHLEMTSLLISLTVCYLIIIIIANIVIMLATMMLICMYRINTRATFYTIYFWILYIQLFKLFINVTFYEMQYILIFGSGMTALFMAFVIYSYNIFFYIYMSVDAIFFYLLAGLSVLNLIRLQKPFQIINKHIIHLSCSVIVFLAFLFNMIILYNTQAFICTNSGKIGFIYTTQLWKLPILLCLVFFHIIIPWVTSIFTTIYVYKLSRRLGSKSSNLKRLALFINLIFILLAAPTITTLVSWILHRDIFLYQSLAMIMSDIGQYTSVLFILYILFVTDAKFRKLFLRFNPRLTESVESKYYTSNSRYKSTKTSYSTETWTNDEVVTNKVLKPPKSFSKSFISLLSRPSKMEIKSSEVSKERA 381          
BLAST of SMED30027092 vs. Planmine SMEST
Match: SMESG000014496.1 (SMESG000014496.1)

HSP 1 Score: 204.142 bits (518), Expect = 3.334e-55
Identity = 112/348 (32.18%), Postives = 190/348 (54.60%), Query Frame = 1
Query:  151 LLLNAVI-------SISGNQTHLRVNTIPEFPFPAGSNFTIEIVEKENGKQIYGNSHDILIIQIS--DSSKKQQAIFEYIYKDMIDMEIKGDFMRIPTWTK-FKS-QIIATMLFDRSANDKTLEIFQITASNNNEKRNQMKTLNKNSRIYQSKISLLIDPKLELLITSMDGRKFELMLDEWGKASCRAFDGVPMEKPYWDKNFDLKMRNPKYSPERNERTIEIYASILDHMKELSCTAGRTRAAVKINVLHHPTQILLDPELGSFVENGTTTYCSSIDGFPVPEVRWHFISGPDDPGRYFNISKDGRKLLLKSETPIGTVWKFNCTASNILPRTKGSFNRTVSFEIGR 1161
            +LLNAVI        ++  Q  L V  +   P    + F I+I  + NG ++  +  D ++I+I   + ++++++I  Y  +D ID EI G FM I  W K F S +I  +++F R A++K LEIF  +A N  ++R  +K L+   R+   KI L +  +L L +  ++  + E+++++   ASCRAF G+P EKP ++ +  L +    Y+   NE  + + AS+ DH+   SC+AG       I + HHPT + + P +     + +T  C + DG+P PE+ W  I GP +  R++N    G ++ + S +P+G+ W F CT  ++L  TK   N+T+SF I +
Sbjct:    1 MLLNAVIFCLIQQLVLTDAQPLLTVCFVSTVPHLLKNTFDIQIKPQANGTKLSDDPSDTMVIRIYSFNFTEEEKSILNYGSQDAIDEEILGKFMDIKVWEKNFSSLRINISIMFKRGAHNKYLEIFYFSAPNKFQRRKYLKNLSLAKRLLYQKIELFMPSQLNLSMYPLNVDRKEIIINDMVMASCRAFGGIPQEKPKFEDHVHLNVMEKIYNKTTNEIRMNLRASLSDHLTNFSCSAGNVTETYTIRIHHHPTALYIQPIIKKRFRSNSTIICFTKDGYPDPEINWQLIEGPPNADRFYNFPGKGDQIHINSNSPVGSKWTFKCTMKSMLVNTKKMLNKTISFAIAK 348          
BLAST of SMED30027092 vs. Planmine SMEST
Match: SMESG000014710.1 (SMESG000014710.1)

HSP 1 Score: 195.667 bits (496), Expect = 1.721e-52
Identity = 104/287 (36.24%), Postives = 166/287 (57.84%), Query Frame = 1
Query:  307 LIIQISDSS--KKQQAIFEYIYKDMIDMEIKGDFMRIPTWTKFKS-QIIATML-FDRSANDKTLEIFQITASNNNEKRNQMKTLNKNSRIYQSKISLLIDPKLELLITSMDGRKFELMLDEWGKASCRAFDGVPMEKPYWDKNFDLKMRNPKYSPERNERTIEIYASILDHMKELSCTAGRTRAAVKINVLHHPTQILLDPELGSFVENGTTTYCSSIDGFPVPEVRWHFISGPDDPGRYFNISKDGRKLLLKSETPIGTVWKFNCTASNILPRTKGSFNRTVSFEI 1155
            ++IQ +D +   K+ AIF++  K++I  E + D+MRIPTW KF+    I TM+ F + AN++ LEI+ I  ++  E+RN +  L     +Y++ I+LL+ P+LEL + S       +  +     SC+A DG P  +P   K+ D+K+    +S + N   I I  S+LDH + ++C AG    +V+I + H PT+I L PE+   + N T   C + +G+P P + W+FI GP D   Y+ I+   ++L +K   PIG+ WKF C+A+N       +FN+TVSF I
Sbjct:    1 MVIQTTDLNGFDKEVAIFDFGLKEVISQEFQSDYMRIPTWGKFEEGATIYTMINFTQYANNRILEIYYINPNSTKERRNMLNHLKPTQLMYRNNINLLVPPQLELKMNSQVRNYITVEPNSSLTVSCQALDGQPKVRPEIVKS-DMKIEFDIFSHDSNTHKITIRTSMLDHNRTVTCKAGSVMKSVRIFIYHAPTKIKLQPEVKKVLGNNTGIICLATNGYPTPRITWYFIHGPSDASLYYQIAPYTQRLYIKENVPIGSSWKFICSATNSFFERSKTFNKTVSFTI 286          
BLAST of SMED30027092 vs. Planmine SMEST
Match: SMESG000070072.1 (SMESG000070072.1)

HSP 1 Score: 185.267 bits (469), Expect = 2.836e-49
Identity = 107/343 (31.20%), Postives = 180/343 (52.48%), Query Frame = 1
Query:  148 CLLLNAVISISGNQTHLRVNTIPEFPFPAGSNFTIEIVEK-ENGKQIYGNSHDILIIQISD--SSKKQQAIFEYIYKDMIDMEIKGDFMRIPTWTKFKS--QIIATMLFDRSANDKTLEIFQITASNNNEKRNQMKTLNKNSRIYQSKISLLIDPKLELLITSMDGRKFELMLDEWGKASCRAFDGVPMEKPYWDKNFDLKMRNPKYSPERNERTIEIYASILDHMKELSCTAGRTRAAVKINVLHHPTQILLDPELGSFVENGTTTYCSSIDGFPVPEVRWHFISGPDDPGRYFNISKDGRKLLLKSETPIGTVWKFNCTASNILPRTKGSFNRTVSFEIGR 1161
            C  L  +++ S  Q  L V ++ +FP   G  F+++I  + ENGK +  +  D + I+I D   ++ ++A   Y   + +D E KG  M +  W K  +   +  +++F+R+A++K LEIF  +ASN  E++  +K L+   R++   I L I   L L +  +   + E+++++   ASC+AF G+P EKP ++ +  L +    Y+   NE  + + AS+ DH+   SC AG       I + HHPT + + P    F  N T   C + DG+P PE+ W  I GP +   ++NI   G ++ + S +  G+ W F CT  + L  T    N+T+SF I R
Sbjct:    8 CFFLPLILAQS--QIPLFVKSVSKFPHLIGDAFSLDIQSRTENGK-LSSDPSDTMAIRIVDLNFTEIERAFLVYGVLNFMDDEFKGKLMDVKVWEKNPTLTAMNISIIFNRAAHNKYLEIFYFSASNALERKKYLKNLSLAKRLFHELIDLFIPSTLTLSVLPIKVDRREIIINDMVMASCKAFGGIPQEKPRFEDHAHLNVTEIIYNKTANEIRMNLRASLTDHLTNFSCVAGNVTETFTIRIHHHPTALYIQPIKKRFQSNSTIK-CYTNDGYPDPEINWQLIEGPPNANLFYNIPPKGDQIYINSNSQTGSKWTFRCTMKSFLVNTNKILNKTISFAITR 346          
The following BLAST results are available for this feature:
BLAST of SMED30027092 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027092 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027092 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027092 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027092 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027092 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027092 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027092 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027092 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027092 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027092 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027092 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027092 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027092 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000032651.11.080e-10798.32SMESG000032651.1[more]
SMESG000032650.10.000e+099.74SMESG000032650.1[more]
SMESG000014496.13.334e-5532.18SMESG000014496.1[more]
SMESG000014710.11.721e-5236.24SMESG000014710.1[more]
SMESG000070072.12.836e-4931.20SMESG000070072.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30027092 ID=SMED30027092|Name=SMED30027092|organism=Schmidtea mediterranea sexual|type=transcript|length=6415bp
ATATATCGATTTGTTTAAAAACCTCTATTTAATGATTATAAAAATAAACT
TATTTAATTATCGTTATAGCTTGTCAAATTGAATCGATTGTGAATAATTT
TAAGATTGTTTTCAATGAAGCTGGCAGTTAAATATTTTTTATCAGCCTGC
TTGCTGTTGAATGCAGTAATATCGATCAGCGGTAACCAGACTCATCTTAG
AGTCAACACTATTCCCGAGTTTCCTTTTCCTGCTGGAAGCAATTTCACAA
TTGAAATAGTAGAAAAAGAAAATGGGAAGCAGATTTATGGAAATTCCCAT
GACATTCTAATAATCCAGATCAGCGATTCCAGCAAGAAGCAACAGGCGAT
ATTTGAGTACATTTATAAGGACATGATCGATATGGAAATAAAGGGAGATT
TCATGCGGATTCCGACTTGGACCAAGTTCAAGAGTCAAATAATTGCGACT
ATGCTGTTTGATCGTTCTGCCAACGACAAAACGTTGGAAATATTTCAAAT
CACAGCCAGTAATAACAACGAAAAACGAAATCAAATGAAAACTCTAAATA
AAAATTCTCGCATTTATCAATCAAAAATTAGTCTTTTGATCGATCCAAAA
CTCGAGCTGCTGATCACTTCTATGGACGGTCGCAAATTCGAATTGATGCT
CGATGAATGGGGAAAGGCAAGCTGTCGGGCGTTTGACGGGGTGCCGATGG
AGAAACCGTATTGGGATAAAAATTTCGACTTGAAAATGCGTAATCCAAAA
TATTCCCCGGAACGGAACGAACGGACGATTGAAATCTACGCGTCGATTCT
CGATCACATGAAGGAGCTAAGCTGCACAGCCGGAAGAACGAGGGCAGCCG
TCAAAATCAATGTACTGCATCATCCGACTCAGATCCTGCTCGATCCGGAG
CTTGGAAGCTTCGTTGAGAATGGCACAACGACTTATTGCTCCTCCATCGA
CGGATTTCCGGTGCCAGAGGTGCGCTGGCACTTCATTTCAGGCCCTGATG
ACCCGGGTAGATATTTCAACATCAGCAAAGATGGACGAAAATTGCTTTTG
AAATCGGAAACGCCAATCGGAACGGTCTGGAAATTCAATTGCACTGCGTC
GAACATTTTGCCGCGCACAAAAGGCTCCTTCAATCGCACTGTCAGCTTTG
AGATCGGACGTAAGTTGACCAGTAATTTCCGTTTAGTTGTATTTAACAGC
TCACCTACTTCAATACCACTTTCCCTCGGTTTAAAGGGCTCCAGATTGGC
AACTTCCCCCATTTATACAGGGGTAATTCCACATATCTATAACCTACCCA
CTTTGCTCATATAATTATATTTAATTTAATATTAGTCAGAATTAATTAGT
AATATATTATATAACTTGATTTGCCGTTTATAAATTATCATAAATTCTAT
ACTAAATTCACATAATTAGCTCCGGAATTGTAAATATTTGGCCAATTGCA
TCAATCAGTCATGCGCACTAGCAGCTAATTGCAACTAGGATTGATTGCAA
TGTGATTAATGGTTAGAAATGTGTGGGAAAGGCCTCAAACGTTGTCAATT
GGTATTGTTGGCCATTGCTAGGAATGACAATACTCACATTGCAAACAAGC
TTGTAGAATTTCAGGATTTCTTTTGTATTATATCTCTTTCGTATTTCACT
AAAATTGCAGAAAATGTGCTTGTTATAATGAATAAAAGCCAAAACAAAAG
GAATTATTCCAAATTATTGATTCACAGTGTGATTATTTCAATATCTGGCC
GTGCAATCGGCAATTTGTGTCTCATAATACCACTGGAAATGTTTTGTCTA
CCTACAAATTATTTTCCAGCAAGGATGATGTCGGCTTTATTGACTACTAA
AGCATGACTTAGTGCTGGTTGGGACAAACATTTTTATTTAATATTCAAAA
GCTTTATTAGTCATTGTAGGAATGACATTGCCAGCTGGCAAAGAAATTGA
AAAATTTCATGACGCCAAAGCTCACCACTCGAGCTTGGTAATAAAGGTTT
TGAACTGAATTCATTGTACCTCCAGATATTTGGTTAGTGATTATCTCAAG
CTGTTCTATGCCATATTGATAGCTCTCGTCGCGGTAATTTACAAAAACAA
TAGATTCAGCATCTAATAACCACTCGATGATATCATAACAACTTTCTGGT
GGTTAATGATGACCTTTGTTCATCTGCTGGTCATGAAATGGTCTGAATAA
GTAGGGCAGCTATCCATAAATATACCCAGAACAATTGTTCCAGGTTGCAG
TGTTTACATAGCTGATCAAATCAATCAAAGTCCATTGAAAATTTCTAAAT
CACGCATGCAAACTGTAATCGTGGAGGATTTTTTGTTCTGAACGTGTTCG
TTCATTCAATCTCACATTTTCATTCTGATTCATCATTATCTGCCGCTGCT
GCTGCTGGTGGTGATGATGATGATGACTATATGATGCTGCCAGAAAACGT
TGTAATGATAAATTTGTCATCAAATCTGGCTCATCTGACATCTGATAGTG
TCAAGCGCATGAACTGCCGATATTAGCCACCCCATACCGCAGAATTTGGA
ACATAAATATGGAGTGAAAGCACTCATTGGAGGCATAATGAATCTTATTA
TAAACATTTTTAATATTCTCAACCGTATATATGCTGAGTAAAATATAATA
TTAAATTTGATCCATATTTGAGCAAGTTGTGAACTGCGATTGTGAATAAA
GTCAACAATTTTTACACCAAGCGATGAAGGGGCCAATAAATTGCTATGGA
TCTCATTTGAGTGGATCTTAGCAAGCCGGAAGCTTAGACTGCACATAAGC
ATTATTGATTTGCTTGATAATATTGATCTGATCAATAATAATTATTAGAA
ATCAATAATCTCAATATAATTAGCAATATTTAGAAAGTTGAAGTCCCATC
TAGAAGGCGTGAAATTACCGTGGATAGCTCAGCAAATTATTCCCATTTCC
CCGTTGCTTATCGTCAATTCCTTAATATATGGACTTCTCACTTCTTAATG
TAATTAAATTACTAGAAATTATAAAACATAAATCGGTAATTTTAATCTAA
TGATATTAATAACTGTGTAACACGCACTAACACATTATCACCGTGCCGTT
GCCCTCCATGCAAAAGTTATTAAAGGCACTTTGTTCCGATATTCCATGCC
AGCTTTCTTTTTCTCACAAGTTGATTAGCAGAAATTTCGCTACAATTCAA
GTTTCAATCTATGCCTAAATATCTGGTTGTGGGCGTCTCAATAAGCCGTG
TACAGTAATAGCTTGTGCAATAACGAGAACCGTTAGGTTAACCATGCTGG
TGAACACTAATATTTACAAAGCGTTTTATTTCTTTCTCTGGTAACAAATC
AGAGTTTGGGAACACGTTCCTATCGTTATATGAGGTGCCTCCGTTGTGTT
GCTAGAGCTTGACTAATCCATGTGATCTAGTGGTGAATGAGTCAGTGGAA
TCTATGTGACTGTGATGGCTGGCATTTACACTGAATACAGCTGAATTATC
ACAGTTCTACATACAAATGGCGTCTGTCTGTTCACTTAGCTAGATTGTAG
ATGTAGCTGCCTGGATCCACCGAGTAACAGCGCAATTGCCAAGGGACCAA
ATGGATTATAAGGCAATTCAACACTATTCTGGCTGTTGCATATTTATTGG
ACCGCAATCACCATCACTGTGATCGCCACCAGAACCTCAATTAAGCAATC
AAAATGATCTATATTTTTTGTATTTCTATGGAGACAAATAGTGAGGTTGA
CTGTGTTGAAGGGTAGACCTTAATGTCAAGGTTATGGATAAGCAGAGAGC
TGTTAATGATAGATCAATGATCTGTAACTTTTCTAATTGAGTAATTGGGC
CTGTCATTTTAAAAAATTTTATCATTTATATTTTTGTCTCAATTTATGCT
ATTAATCAATCATGATGGTTATTTTTTCAGGTCCCCAAGAAGGTTTATTT
GGACTTAGTAGGTGTCGTCATGTTCTCCTTTGTTGATGAGTGTTTATTGG
ATGCCAGTCAAGGATGTTTTATAAGGCTTTTCACTTATTTAATTCTATTG
TATTATCGTGCTTTATTTCTCAGTGTTTGTTTCTGAGTGTGGAATGATGG
CACAGAGGAATGATGATGAGACATCTGTTGAGTGCTTACAGATCAAACCT
ATTGACAAGTGTCCACCATAATTGTTTTTTATTCAGATCTCACTTTTCAA
ATCATGGTCGGCGTGGCTGTAATGGGCGCCATCATTATATTCTGCATTGC
CATGGTATTTATAGTGTGTCTCGCTCGAAGGAGCTGTGTGGATCAGAACG
CTACAAGGAATAACCGTCGCAACGGAGTTCCTGCGAAACATGTGGTGGAG
AAAAAGACCCTAGATTCTGAACAAGTGACATTGTTACCTCCGGGAGCACC
CCAGAATCATTTGGATTTGGCTAACACCGGTTCCGGCCTACCGCTGCCTC
CACCCGAATATCAACTGATCATCGATAACAGTGAAGTGAAACCAGCAATT
CCACTTGAACCCCAAGTTTCCACTGAGCCATACGCCGAAGTAACGTACGC
GGAATTGAACACGTCTGATTTGCCAATGAAGGAGAGCAGAGGTCACAAGT
TCAACAACAACAACAACAATAGTGACGAATACAATCAGCAAGTGATATAC
TCCCAGATCATTGGCACCATATCCACGCCAGATCCTGGCCAACGAACCTA
CATGAACCAAGATAGCGTTTAAAGGTTGCAGCATCATCTGAGATTTTATG
AACTGTTTTCTCTAAGAACATTAATCCGTGTATATTGTTTATTACGATAA
GTAGTCGTCACATTTATTCGATTAGATATTTTATATTTAGACATTGATGT
TGTCACTGTTATTTTCTTTTCCGTCGTTCATCTCTGTAATAATTTTTCTC
TCTACTTTTTAGTTTTCAATGTTCAGTGCGTGTGACAATGCAATTTGATA
GCTGTAAATATGCGGATGATGCTGGTGATGCTGAGCTGTTGCTGAGCTGA
TGCTGATCTCAATGCCATTGTGATACTGACTGTGTTTCTGGTTTTGATTT
GTTATTCCTATATATTATTATTATATATATATATGTGTGTATATTTGTGT
GTGTGTATTTATATGTATGATCGTCATCATCATTATCATCGTCATTCTCG
TTATTGTTGCTGTTGTTGAGCATTATCTTGATTTTATCCATTCAAGCTCT
CTCTTTTGATACTTCAGAACTTTTTATTTCCATTTTCGATGGTCTGGAAA
GCAGAGAAATAAAGGATTTTGAAAACGATTTTGGTGGTTTCAATACTTTG
TTGGTTACTACTTCATCGTTTGTCCAGGTTTCTGTTGAATAAGAGGTCTT
GGTGGACTTGTACCTGGAATTTGATGTATAATACTTCGATTCGACAGACT
CTGTCAATCTAGGATTGAATCTCAGAAACAGCTTCCTAAACTTGGCGTCT
GTGACAAAGAGTATGTAGAGAATAAACAACACTGACGTATATTGCCCAAT
GTCTGACATAATCATCGCAAGACTTTGATAAAGGAAAATATCCCTATGTA
GGATCCAACTCACCAAGGTGGTAATGGTAGGGGCTGCTAATAAGATGAAA
ATCAAATTTATAAACAAAGCCAGTCGCTTCAAATTCGATGATTTACTTCC
AAGTCTCCTACTGAGCTTGTATACGTATATGGTGGTGAAGATTGATGTCA
CCCACGGAATAATGATGTGGAAGAATACGAGGCACAATAAAATGGGAAGT
TTCCATAATTGAGTGGTATAAATGAAACCAATTTTACCAGAATTTGTGCA
AATGAATGCCTGAGTATTGTAGAGAATGATCATATTGAATAAAAACGCGA
GAAATACGATGACGGAGCATAACAAGTGTATAATATGTTTGTTGATGATC
TGGAATGGCTTCTGCAGCCTTATCAGATTTAGTACCGACAGCCCTGCCAG
CAAATAGAAGAATATCGCATCGACAGACATGTAGATATAGAAGAAAATGT
TATATGAATAAATGACAAACGCCATGAACAAGGCTGTCATTCCAGACCCG
AATATGAGAATGTATTGCATTTCATAGAATGTCACGTTGATGAAGAGCTT
GAACAGCTGAATGTATAAGATCCAGAAATATATTGTATAGAATGTCGCCC
GTGTATTTATCCGATACATGCATATCAGCATCATTGTTGCTAGCATGATG
ACTATGTTGGCTATTATGATGATGATTAAGTAGCACACCGTCAGAGAGAT
CAGCAATGACGTCATCTCCAAGTGATTGATCCGGTTTATGCTACAGTTGT
CTTCTAGGGCTATGATGAAACCTTTCAAGGCTGGCATTGACTATAATTCT
TGGCTCAATACTGATCAATATGACAGACATTTATTTATTACTATTAGACA
TGGGCATTTCAGGAC
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protein sequence of SMED30027092-orf-1

>SMED30027092-orf-1 ID=SMED30027092-orf-1|Name=SMED30027092-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=173bp
MVGVAVMGAIIIFCIAMVFIVCLARRSCVDQNATRNNRRNGVPAKHVVEK
KTLDSEQVTLLPPGAPQNHLDLANTGSGLPLPPPEYQLIIDNSEVKPAIP
LEPQVSTEPYAEVTYAELNTSDLPMKESRGHKFNNNNNNSDEYNQQVIYS
QIIGTISTPDPGQRTYMNQDSV*
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protein sequence of SMED30027092-orf-2

>SMED30027092-orf-2 ID=SMED30027092-orf-2|Name=SMED30027092-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=113bp
MCGKGLKRCQLVLLAIARNDNTHIANKLVEFQDFFCIISLSYFTKIAENV
LVIMNKSQNKRNYSKLLIHSVIISISGRAIGNLCLIIPLEMFCLPTNYFP
ARMMSALLTTKA*
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protein sequence of SMED30027092-orf-3

>SMED30027092-orf-3 ID=SMED30027092-orf-3|Name=SMED30027092-orf-3|organism=Schmidtea mediterranea sexual|type=polypeptide|length=400bp
MKLAVKYFLSACLLLNAVISISGNQTHLRVNTIPEFPFPAGSNFTIEIVE
KENGKQIYGNSHDILIIQISDSSKKQQAIFEYIYKDMIDMEIKGDFMRIP
TWTKFKSQIIATMLFDRSANDKTLEIFQITASNNNEKRNQMKTLNKNSRI
YQSKISLLIDPKLELLITSMDGRKFELMLDEWGKASCRAFDGVPMEKPYW
DKNFDLKMRNPKYSPERNERTIEIYASILDHMKELSCTAGRTRAAVKINV
LHHPTQILLDPELGSFVENGTTTYCSSIDGFPVPEVRWHFISGPDDPGRY
FNISKDGRKLLLKSETPIGTVWKFNCTASNILPRTKGSFNRTVSFEIGRK
LTSNFRLVVFNSSPTSIPLSLGLKGSRLATSPIYTGVIPHIYNLPTLLI*
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protein sequence of SMED30027092-orf-4

>SMED30027092-orf-4 ID=SMED30027092-orf-4|Name=SMED30027092-orf-4|organism=Schmidtea mediterranea sexual|type=polypeptide|length=382bp
MPALKGFIIALEDNCSINRINHLEMTSLLISLTVCYLIIIIIANIVIMLA
TMMLICMYRINTRATFYTIYFWILYIQLFKLFINVTFYEMQYILIFGSGM
TALFMAFVIYSYNIFFYIYMSVDAIFFYLLAGLSVLNLIRLQKPFQIINK
HIIHLLCSVIVFLAFLFNMIILYNTQAFICTNSGKIGFIYTTQLWKLPIL
LCLVFFHIIIPWVTSIFTTIYVYKLSRRLGSKSSNLKRLALFINLIFILL
AAPTITTLVSWILHRDIFLYQSLAMIMSDIGQYTSVLFILYILFVTDAKF
RKLFLRFNPRLTESVESKYYTSNSRYKSTKTSYSTETWTNDEVVTNKVLK
PPKSFSKSFISLLSRPSKMEIKSSEVSKERA*
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protein sequence of SMED30027092-orf-5

>SMED30027092-orf-5 ID=SMED30027092-orf-5|Name=SMED30027092-orf-5|organism=Schmidtea mediterranea sexual|type=polypeptide|length=110bp
MGEVANLEPFKPRESGIEVGELLNTTKRKLLVNLRPISKLTVRLKEPFVR
GKMFDAVQLNFQTVPIGVSDFKSNFRPSLLMLKYLPGSSGPEMKCQRTSG
TGNPSMEEQ*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000101muscle cell
PLANA:0000418head