SMED30027083

Overview
NameSMED30027083
Smed IDSMED30027083
Length (bp)498
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30027083 (SMED30027083) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30027083 (SMED30027083) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30027083 (SMED30027083) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30027083 (SMED30027083) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30027083

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 206

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30027083h1SMcG0000090 dd_Smed_v4_1243_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30027083h1SMcG0000090 dd_Smed_v4_1243_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0000090 dd_Smed_v4_1243_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30027083h1SMcG0000090 dd_Smed_v4_1243_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30027083h1SMcG0000090 dd_Smed_v4_1243_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0000090 dd_Smed_v4_1243_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0000090 dd_Smed_v4_529_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30027083h1SMcG0000090 dd_Smed_v4_529_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0000090 dd_Smed_v4_529_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30027083h1SMcG0000090 dd_Smed_v4_529_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30027083h1SMcG0000090 dd_Smed_v4_529_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30027083h1SMcG0000090 dd_Smed_v4_529_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30027083h1SMcG0000090 dd_Smed_v4_529_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027083h1SMcG0000083 Contig31041newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027083h1SMcG0000083 Contig31041uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027083h1SMcG0000098 Contig31041newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027083h1SMcG0000098 Contig31041uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027083h1SMcG0000090 Contig31041newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027083h1SMcG0000090 Contig31041uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027083h1SMcG0000090 Contig22758newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0000090 dd_Smed_v4_1243_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30027083h1SMcG0000090 dd_Smed_v4_1243_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0000090 dd_Smed_v4_1243_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30027083h1SMcG0000090 dd_Smed_v4_1243_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30027083h1SMcG0000090 dd_Smed_v4_1243_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0000090 dd_Smed_v4_1243_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0000090 dd_Smed_v4_529_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30027083h1SMcG0000090 dd_Smed_v4_529_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0000090 dd_Smed_v4_529_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30027083h1SMcG0000090 dd_Smed_v4_529_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30027083h1SMcG0000090 dd_Smed_v4_529_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30027083h1SMcG0000090 dd_Smed_v4_529_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30027083h1SMcG0000090 dd_Smed_v4_529_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027083h1SMcG0000083 Contig31041newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027083h1SMcG0000083 Contig31041uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027083h1SMcG0000098 Contig31041newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027083h1SMcG0000098 Contig31041uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027083h1SMcG0000090 Contig31041newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027083h1SMcG0000090 Contig31041uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027083h1SMcG0000090 Contig22758newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0000026 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0000026 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0000026 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0000098 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0000098 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0000098 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0000098 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0000107 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0000107 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0000107 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0000036 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0000036 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0000036 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0000090 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0000090 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0000090 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0000090 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0000090 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0000090 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0000090 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0009086 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0009086 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0009086 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0009086 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0008990 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0008990 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0008990 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0008990 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0008966 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0008966 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0008966 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0008966 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0009107 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0009107 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0009107 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0009107 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0009109 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0009109 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0009109 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0009109 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0009106 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0009106 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0009106 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0009106 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0009086 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0009086 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0009086 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0008970 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
vitelline glandSMED30027083h1SMcG0000090 Contig47485uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
vitelline glandSMED30027083h1SMcG0000090 Contig47485newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
oocyteSMED30027083h1SMcG0000090 Contig47485uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
oocyteSMED30027083h1SMcG0000090 Contig47485newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
ovarySMED30027083h1SMcG0000036 PL030016A10H10smed_ncbi_20240424PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30027083h1SMcG0000036 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30027083h1SMcG0000090 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30027083h1SMcG0000132 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30027083h1SMcG0000196 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30027083h1SMcG0000098 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30027083h1SMcG0000133 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30027083h1SMcG0000257 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30027083h1SMcG0000107 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30027083h1SMcG0000026 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30027083h1SMcG0000263 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30027083h1SMcG0021921 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
oocyteSMED30027083h1SMcG0000090 Contig47485uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
oocyteSMED30027083h1SMcG0000090 Contig47485newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
vitelline glandSMED30027083h1SMcG0000090 Contig47485uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
vitelline glandSMED30027083h1SMcG0000090 Contig47485newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
ovarySMED30027083h1SMcG0000036 PL030016A10H10smed_ncbi_20240424PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
epidermisSMED30027083h1SMcG0008970 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0008970 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0008970 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0009120 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0009120 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0009120 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0009120 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0009147 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0009147 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0009147 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0009147 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0009192 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0009192 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0009192 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0009192 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0009184 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0009184 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0009184 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0009184 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0000026 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0000026 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0000026 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0000098 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0000098 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0000098 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0000098 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0000107 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0000107 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0000107 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0000036 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0000036 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0000036 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0000090 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0000090 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0000090 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0000090 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0000090 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0000090 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0000090 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0009086 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0009086 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0009086 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0009086 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0008990 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0008990 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0008990 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0008990 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0008966 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0008966 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0008966 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0008966 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0009107 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0009107 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0009107 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0009107 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0009109 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0009109 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0009109 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0009109 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0009106 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0009106 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0009106 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0009106 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0009086 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0009086 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0009086 dd_Smed_v6_1243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0008970 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0008970 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0008970 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0008970 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0009120 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0009120 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0009120 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0009120 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0009147 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0009147 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0009147 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0009147 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0009192 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0009192 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0009192 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0009192 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30027083h1SMcG0009184 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30027083h1SMcG0009184 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30027083h1SMcG0009184 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30027083h1SMcG0009184 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
ovarySMED30027083h1SMcG0000036 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30027083h1SMcG0000090 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30027083h1SMcG0000132 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30027083h1SMcG0000196 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30027083h1SMcG0000098 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30027083h1SMcG0000133 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30027083h1SMcG0000257 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30027083h1SMcG0000107 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30027083h1SMcG0000026 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30027083h1SMcG0000263 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30027083h1SMcG0021921 Contig1624GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30027083 vs. Planmine SMEST
Match: SMESG000016032.1 (SMESG000016032.1)

HSP 1 Score: 189.504 bits (480), Expect = 2.582e-58
Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = 3 
Query:    3 KEQENTG*IEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGXXXXXXXXXXXXXXXLQNEMIELRREISQSKQQIDAFKQISEXXXXXXNIKV 389
            KEQENTG IEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEM+AKEQENRGEINEEIA VNNANRALQNEMIELRREISQSKQQIDAFKQISEQQQLQQNIK+
Sbjct:  208 KEQENTGEIEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMKAKEQENRGEINEEIAEVNNANRALQNEMIELRREISQSKQQIDAFKQISEQQQLQQNIKI 336

HSP 2 Score: 83.1889 bits (204), Expect = 6.008e-19
Identity = 62/95 (65.26%), Postives = 76/95 (80.00%), Query Frame = 3 
Query:   78 LQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGXXXXX---XXXXXXXXXXLQNEMIELR-------REISQSKQQ 332
            L++EM  ++++NI+LK+EISQSKQ+ +NI+LQLTNQQQKMCEMEAKEQEN GEI E    +  + NANRALQ+EMIELR       REISQSKQQ
Sbjct:  163 LRNEMESMKSENIELKKEISQSKQKIENIQLQLTNQQQKMCEMEAKEQENTGEIEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQ 257
[Close]
BLAST of SMED30027083 vs. Planmine SMEST
Match: SMESG000000563.1 (SMESG000000563.1)

HSP 1 Score: 183.726 bits (465), Expect = 6.555e-56
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 KEQENTG*IEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGXXXXXXXXXXXXXXXLQNEMIELRREISQSKQQIDAFKQISEXXXXXXNIKV 389
            KEQENTG IE+LNEEMVVIKNANRALQDEMIELRNDNIQLKREISQS+QQNQNIELQLTNQQQKMCEMEAKEQENRGEINEEIAAVNNANRALQNEMIELRREISQSKQQIDAFKQ  EQQQLQQNIK+
Sbjct:  222 KEQENTGEIEQLNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSRQQNQNIELQLTNQQQKMCEMEAKEQENRGEINEEIAAVNNANRALQNEMIELRREISQSKQQIDAFKQNCEQQQLQQNIKI 350

HSP 2 Score: 72.7886 bits (177), Expect = 2.601e-15
Identity = 63/112 (56.25%), Postives = 76/112 (67.86%), Query Frame = 3 
Query:   27 IEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRG---XXXXXXXXXXXXXXXLQNEMIELR-------REISQSKQQ 332
            I  L  EM  +K+ N  +++  IELRND I+L+    Q KQQ  NIE Q  NQQQKMCEMEAKEQEN G   ++NEE+  + NANRALQ+EMIELR       REISQS+QQ
Sbjct:  160 INNLRNEMESMKSENTEMRNYNIELRNDIIELRNANKQFKQQIDNIERQFINQQQKMCEMEAKEQENTGEIEQLNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSRQQ 271

HSP 3 Score: 47.7506 bits (112), Expect = 1.096e-6
Identity = 23/28 (82.14%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:  415 IQIQNEMEKCAYEIQSIQTNFGNAEFIN 498
            I+IQNEMEKCA EI  IQT FGNAEFIN
Sbjct:  348 IKIQNEMEKCANEIPPIQTKFGNAEFIN 375
[Close]
BLAST of SMED30027083 vs. Planmine SMEST
Match: SMESG000000294.1 (SMESG000000294.1)

HSP 1 Score: 181.8 bits (460), Expect = 9.664e-56
Identity = 121/129 (93.80%), Postives = 125/129 (96.90%), Query Frame = 3 
Query:    3 KEQENTG*IEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGXXXXXXXXXXXXXXXLQNEMIELRREISQSKQQIDAFKQISEXXXXXXNIKV 389
            KEQENT  IE LNEEMVVIKNANRALQDEMIELRNDNIQLKR+ISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGEIN EIAAVNNANR+LQNEMIELR+EISQSKQQIDAFKQISEQQQLQQNIK+
Sbjct:  222 KEQENTAEIELLNEEMVVIKNANRALQDEMIELRNDNIQLKRQISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGEINGEIAAVNNANRSLQNEMIELRKEISQSKQQIDAFKQISEQQQLQQNIKI 350

HSP 2 Score: 69.3218 bits (168), Expect = 3.607e-14
Identity = 62/112 (55.36%), Postives = 74/112 (66.07%), Query Frame = 3 
Query:   27 IEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRG---XXXXXXXXXXXXXXXLQNEMIELR-------REISQSKQQ 332
            I  L  EM  +K+ N  +++  IELRND I+L+    Q KQQ  NIE Q  NQQQKMCEMEAKEQEN      +NEE+  + NANRALQ+EMIELR       R+ISQSKQQ
Sbjct:  160 INNLRNEMESMKSENTEMRNYNIELRNDIIELRNANKQFKQQIDNIERQFINQQQKMCEMEAKEQENTAEIELLNEEMVVIKNANRALQDEMIELRNDNIQLKRQISQSKQQ 271

HSP 3 Score: 47.3654 bits (111), Expect = 1.404e-6
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:  415 IQIQNEMEKCAYEIQSIQTNFGNAEFIN 498
            I+IQNEMEKCA EI+ IQT FGNAEFIN
Sbjct:  348 IKIQNEMEKCANEIRLIQTKFGNAEFIN 375
[Close]
BLAST of SMED30027083 vs. Planmine SMEST
Match: SMESG000015894.1 (SMESG000015894.1)

HSP 1 Score: 182.956 bits (463), Expect = 1.068e-55
Identity = 122/128 (95.31%), Postives = 126/128 (98.44%), Query Frame = 3 
Query:    3 KEQENTG*IEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGXXXXXXXXXXXXXXXLQNEMIELRREISQSKQQIDAFKQISEXXXXXXNIK 386
            KEQENTG IEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQS+QQNQNIELQLTNQ+QKMCEMEAKEQ+NRGEINEEIAAVNNANRA+QNEMIELRREISQ KQQIDAFKQISEQQQLQQNIK
Sbjct:  208 KEQENTGEIEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSRQQNQNIELQLTNQKQKMCEMEAKEQKNRGEINEEIAAVNNANRAIQNEMIELRREISQFKQQIDAFKQISEQQQLQQNIK 335

HSP 2 Score: 77.411 bits (189), Expect = 5.574e-17
Identity = 59/95 (62.11%), Postives = 74/95 (77.89%), Query Frame = 3 
Query:   78 LQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGXXXXX---XXXXXXXXXXLQNEMIELR-------REISQSKQQ 332
            L++E+  ++++NI+LKR+ SQSKQQ +NIELQL NQ+QKMCEMEAKEQEN GEI E    +  + NANRALQ+EMIELR       REISQS+QQ
Sbjct:  163 LRNEIESMKSENIELKRKFSQSKQQIENIELQLRNQKQKMCEMEAKEQENTGEIEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSRQQ 257
[Close]
BLAST of SMED30027083 vs. Planmine SMEST
Match: SMESG000000559.1 (SMESG000000559.1)

HSP 1 Score: 182.57 bits (462), Expect = 1.338e-55
Identity = 122/129 (94.57%), Postives = 125/129 (96.90%), Query Frame = 3 
Query:    3 KEQENTG*IEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGXXXXXXXXXXXXXXXLQNEMIELRREISQSKQQIDAFKQISEXXXXXXNIKV 389
            KEQENT  IE+LNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGEINEEIAAVNNANRALQNEMIELRREIS+ KQQIDAFKQISEQ QLQQNIK+
Sbjct:  222 KEQENTAEIEQLNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGEINEEIAAVNNANRALQNEMIELRREISKFKQQIDAFKQISEQHQLQQNIKI 350

HSP 2 Score: 69.707 bits (169), Expect = 2.465e-14
Identity = 63/112 (56.25%), Postives = 74/112 (66.07%), Query Frame = 3 
Query:   27 IEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRG---XXXXXXXXXXXXXXXLQNEMIELR-------REISQSKQQ 332
            I  L  EM  +K  N  +++  IELRND I+L+    Q KQQ  NIE Q  NQQQKMCEMEAKEQEN     ++NEE+  + NANRALQ+EMIELR       REISQSKQQ
Sbjct:  160 INNLRNEMESMKRENTEMRNYNIELRNDIIELRNANEQFKQQIDNIERQFINQQQKMCEMEAKEQENTAEIEQLNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQ 271

HSP 3 Score: 47.3654 bits (111), Expect = 1.373e-6
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:  415 IQIQNEMEKCAYEIQSIQTNFGNAEFIN 498
            I+IQNEMEKCA EI+ IQT FGNAEFIN
Sbjct:  348 IKIQNEMEKCANEIRLIQTKFGNAEFIN 375
The following BLAST results are available for this feature:
BLAST of SMED30027083 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027083 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027083 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027083 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027083 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027083 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027083 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027083 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027083 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027083 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027083 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027083 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027083 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027083 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000016032.12.582e-5896.90SMESG000016032.1[more]
SMESG000000563.16.555e-5695.35SMESG000000563.1[more]
SMESG000000294.19.664e-5693.80SMESG000000294.1[more]
SMESG000015894.11.068e-5595.31SMESG000015894.1[more]
SMESG000000559.11.338e-5594.57SMESG000000559.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30027083 ID=SMED30027083|Name=SMED30027083|organism=Schmidtea mediterranea sexual|type=transcript|length=498bp
CGAAGGAGCAGGAAAACACAGGATAAATCGAGGAACTCAATGAGGAAATG
GTCGTAATCAAGAATGCGAATCGCGCATTGCAAGATGAAATGATCGAATT
GCGAAATGATAATATCCAATTGAAAAGAGAAATCAGCCAATCCAAACAAC
AAAATCAAAATATCGAGCTGCAATTAACCAATCAGCAGCAGAAAATGTGC
GAGATGGAAGCGAAGGAGCAGGAAAACCGAGGAGAAATCAATGAGGAAAT
AGCGGCAGTCAATAATGCGAATCGCGCATTACAAAATGAAATGATCGAAT
TGAGGAGGGAAATCAGCCAATCCAAACAGCAAATTGATGCATTTAAACAA
ATCAGTGAACAGCAGCAACTGCAGCAGAATATAAAAGTGATTTATAGAAA
TGATTGAATTTGTGATTCAGATTCAAAATGAAATGGAGAAATGCGCCTAT
GAAATCCAGTCGATTCAAACAAATTTTGGAAATGCAGAATTTATAAAT
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protein sequence of SMED30027083-orf-1

>SMED30027083-orf-1 ID=SMED30027083-orf-1|Name=SMED30027083-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=120bp
MVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKM
CEMEAKEQENRGEINEEIAAVNNANRALQNEMIELRREISQSKQQIDAFK
QISEQQQLQQNIKVIYRND*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000070intestinal phagocyte
PLANA:0000204ovary
PLANA:0002032epidermal cell
PLANA:0003116parenchymal cell