Overview
Name SMED30027083
Smed ID SMED30027083
Length (bp) 498
Neoblast Clusters
Zeng et. al., 2018
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progenies
We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.
We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)
Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2 ), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.
Expression of SMED30027083 (SMED30027083) t-SNE clustered cells
Violin plots show distribution of expression levels for SMED30027083 (SMED30027083) in cells (dots) of each of the 12 neoblast clusters.
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Sub-lethal Irradiated Surviving X1 and X2 Cell Population
t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.
Expression of SMED30027083 (SMED30027083) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.
Violin plots show distribution of expression levels for SMED30027083 (SMED30027083) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.
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Anatomical Expression
PAGE et. al., 2020
SMED30027083
has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE
Expressed In Reference Transcript Gene Models Published Transcript Transcriptome Publication Specimen Lifecycle Evidence pharynx SMED30027083 h1SMcG0000090 dd_Smed_v4_1243_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30027083 h1SMcG0000090 dd_Smed_v4_1243_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 epidermis SMED30027083 h1SMcG0000090 dd_Smed_v4_1243_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 cephalic ganglia SMED30027083 h1SMcG0000090 dd_Smed_v4_1243_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 muscle cell SMED30027083 h1SMcG0000090 dd_Smed_v4_1243_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchymal cell SMED30027083 h1SMcG0000090 dd_Smed_v4_1243_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 pharynx SMED30027083 h1SMcG0000090 dd_Smed_v4_529_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30027083 h1SMcG0000090 dd_Smed_v4_529_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 epidermis SMED30027083 h1SMcG0000090 dd_Smed_v4_529_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 cephalic ganglia SMED30027083 h1SMcG0000090 dd_Smed_v4_529_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 muscle cell SMED30027083 h1SMcG0000090 dd_Smed_v4_529_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 neoblast SMED30027083 h1SMcG0000090 dd_Smed_v4_529_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchyma SMED30027083 h1SMcG0000090 dd_Smed_v4_529_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 Smed sexual biotype SMED30027083 h1SMcG0000083 Contig31041 newmark_ests PMID:29674431 Fincher et al., 2018 Smed sexual biotype SMED30027083 h1SMcG0000083 Contig31041 uc_Smed_v2 PMID:29674431 Fincher et al., 2018 Smed sexual biotype SMED30027083 h1SMcG0000098 Contig31041 newmark_ests PMID:29674431 Fincher et al., 2018 Smed sexual biotype SMED30027083 h1SMcG0000098 Contig31041 uc_Smed_v2 PMID:29674431 Fincher et al., 2018 Smed sexual biotype SMED30027083 h1SMcG0000090 Contig31041 newmark_ests PMID:29674431 Fincher et al., 2018 Smed sexual biotype SMED30027083 h1SMcG0000090 Contig31041 uc_Smed_v2 PMID:29674431 Fincher et al., 2018 Smed sexual biotype SMED30027083 h1SMcG0000090 Contig22758 newmark_ests PMID:29674431 Fincher et al., 2018 pharynx SMED30027083 h1SMcG0000090 dd_Smed_v4_1243_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30027083 h1SMcG0000090 dd_Smed_v4_1243_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 epidermis SMED30027083 h1SMcG0000090 dd_Smed_v4_1243_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 cephalic ganglia SMED30027083 h1SMcG0000090 dd_Smed_v4_1243_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 muscle cell SMED30027083 h1SMcG0000090 dd_Smed_v4_1243_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchymal cell SMED30027083 h1SMcG0000090 dd_Smed_v4_1243_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 pharynx SMED30027083 h1SMcG0000090 dd_Smed_v4_529_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 nervous system SMED30027083 h1SMcG0000090 dd_Smed_v4_529_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 epidermis SMED30027083 h1SMcG0000090 dd_Smed_v4_529_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 cephalic ganglia SMED30027083 h1SMcG0000090 dd_Smed_v4_529_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 muscle cell SMED30027083 h1SMcG0000090 dd_Smed_v4_529_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 neoblast SMED30027083 h1SMcG0000090 dd_Smed_v4_529_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 parenchyma SMED30027083 h1SMcG0000090 dd_Smed_v4_529_0_1 dd_Smed_v4 PMID:29674431 Fincher et al., 2018 Smed sexual biotype SMED30027083 h1SMcG0000083 Contig31041 newmark_ests PMID:29674431 Fincher et al., 2018 Smed sexual biotype SMED30027083 h1SMcG0000083 Contig31041 uc_Smed_v2 PMID:29674431 Fincher et al., 2018 Smed sexual biotype SMED30027083 h1SMcG0000098 Contig31041 newmark_ests PMID:29674431 Fincher et al., 2018 Smed sexual biotype SMED30027083 h1SMcG0000098 Contig31041 uc_Smed_v2 PMID:29674431 Fincher et al., 2018 Smed sexual biotype SMED30027083 h1SMcG0000090 Contig31041 newmark_ests PMID:29674431 Fincher et al., 2018 Smed sexual biotype SMED30027083 h1SMcG0000090 Contig31041 uc_Smed_v2 PMID:29674431 Fincher et al., 2018 Smed sexual biotype SMED30027083 h1SMcG0000090 Contig22758 newmark_ests PMID:29674431 Fincher et al., 2018 epidermis SMED30027083 h1SMcG0000026 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0000026 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0000026 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0000098 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0000098 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0000098 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0000098 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0000107 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0000107 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0000107 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0000036 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0000036 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0000036 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0000090 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0000090 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0000090 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0000090 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0000090 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0000090 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0000090 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0009086 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0009086 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0009086 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0009086 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0008990 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0008990 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0008990 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0008990 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0008966 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0008966 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0008966 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0008966 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0009107 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0009107 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0009107 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0009107 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0009109 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0009109 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0009109 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0009109 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0009106 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0009106 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0009106 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0009106 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0009086 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0009086 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0009086 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0008970 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 vitelline gland SMED30027083 h1SMcG0000090 Contig47485 uc_Smed_v2 PMID:28434803 Rouhana et al., 2017 vitelline gland SMED30027083 h1SMcG0000090 Contig47485 newmark_ests PMID:28434803 Rouhana et al., 2017 oocyte SMED30027083 h1SMcG0000090 Contig47485 uc_Smed_v2 PMID:28434803 Rouhana et al., 2017 oocyte SMED30027083 h1SMcG0000090 Contig47485 newmark_ests PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0000036 PL030016A10H10 smed_ncbi_20240424 PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0000036 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0000090 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0000132 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0000196 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0000098 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0000133 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0000257 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0000107 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0000026 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0000263 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0021921 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017 oocyte SMED30027083 h1SMcG0000090 Contig47485 uc_Smed_v2 PMID:28434803 Rouhana et al., 2017 oocyte SMED30027083 h1SMcG0000090 Contig47485 newmark_ests PMID:28434803 Rouhana et al., 2017 vitelline gland SMED30027083 h1SMcG0000090 Contig47485 uc_Smed_v2 PMID:28434803 Rouhana et al., 2017 vitelline gland SMED30027083 h1SMcG0000090 Contig47485 newmark_ests PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0000036 PL030016A10H10 smed_ncbi_20240424 PMID:28434803 Rouhana et al., 2017 epidermis SMED30027083 h1SMcG0008970 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0008970 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0008970 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0009120 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0009120 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0009120 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0009120 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0009147 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0009147 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0009147 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0009147 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0009192 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0009192 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0009192 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0009192 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0009184 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0009184 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0009184 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0009184 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0000026 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0000026 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0000026 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0000098 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0000098 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0000098 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0000098 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0000107 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0000107 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0000107 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0000036 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0000036 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0000036 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0000090 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0000090 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0000090 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0000090 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0000090 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0000090 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0000090 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0009086 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0009086 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0009086 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0009086 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0008990 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0008990 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0008990 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0008990 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0008966 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0008966 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0008966 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0008966 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0009107 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0009107 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0009107 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0009107 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0009109 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0009109 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0009109 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0009109 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0009106 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0009106 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0009106 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0009106 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0009086 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0009086 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0009086 dd_Smed_v6_1243_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0008970 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0008970 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0008970 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0008970 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0009120 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0009120 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0009120 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0009120 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0009147 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0009147 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0009147 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0009147 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0009192 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0009192 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0009192 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0009192 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 pharynx SMED30027083 h1SMcG0009184 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 epidermis SMED30027083 h1SMcG0009184 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 intestinal phagocyte SMED30027083 h1SMcG0009184 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 parenchymal cell SMED30027083 h1SMcG0009184 dd_Smed_v6_490_0 dd_Smed_v6 PMID:29674432 Plass et al., 2018 ovary SMED30027083 h1SMcG0000036 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0000090 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0000132 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0000196 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0000098 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0000133 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0000257 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0000107 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0000026 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0000263 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017 ovary SMED30027083 h1SMcG0021921 Contig1624 GPL15192 PMID:28434803 Rouhana et al., 2017
Note: Hover over icons to view figure legend
Alignments
SMED30027083 aligns in the following genomic locations:
Homology
BLAST of SMED30027083 vs. Planmine SMEST
Match:
SMESG000016032.1 (SMESG000016032.1)
HSP 1 Score: 189.504 bits (480), Expect = 2.582e-58
Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = 3
Query: 3 KEQENTG*IEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGXXXXXXXXXXXXXXXLQNEMIELRREISQSKQQIDAFKQISEXXXXXXNIKV 389
KEQENTG IEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEM+AKEQENRGEINEEIA VNNANRALQNEMIELRREISQSKQQIDAFKQISEQQQLQQNIK+
Sbjct: 208 KEQENTGEIEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMKAKEQENRGEINEEIAEVNNANRALQNEMIELRREISQSKQQIDAFKQISEQQQLQQNIKI 336 HSP 2 Score: 83.1889 bits (204), Expect = 6.008e-19
Identity = 62/95 (65.26%), Postives = 76/95 (80.00%), Query Frame = 3
Query: 78 LQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGXXXXX---XXXXXXXXXXLQNEMIELR-------REISQSKQQ 332
L++EM ++++NI+LK+EISQSKQ+ +NI+LQLTNQQQKMCEMEAKEQEN GEI E + + NANRALQ+EMIELR REISQSKQQ
Sbjct: 163 LRNEMESMKSENIELKKEISQSKQKIENIQLQLTNQQQKMCEMEAKEQENTGEIEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQ 257
BLAST of SMED30027083 vs. Planmine SMEST
Match:
SMESG000000563.1 (SMESG000000563.1)
HSP 1 Score: 183.726 bits (465), Expect = 6.555e-56
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 3
Query: 3 KEQENTG*IEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGXXXXXXXXXXXXXXXLQNEMIELRREISQSKQQIDAFKQISEXXXXXXNIKV 389
KEQENTG IE+LNEEMVVIKNANRALQDEMIELRNDNIQLKREISQS+QQNQNIELQLTNQQQKMCEMEAKEQENRGEINEEIAAVNNANRALQNEMIELRREISQSKQQIDAFKQ EQQQLQQNIK+
Sbjct: 222 KEQENTGEIEQLNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSRQQNQNIELQLTNQQQKMCEMEAKEQENRGEINEEIAAVNNANRALQNEMIELRREISQSKQQIDAFKQNCEQQQLQQNIKI 350 HSP 2 Score: 72.7886 bits (177), Expect = 2.601e-15
Identity = 63/112 (56.25%), Postives = 76/112 (67.86%), Query Frame = 3
Query: 27 IEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRG---XXXXXXXXXXXXXXXLQNEMIELR-------REISQSKQQ 332
I L EM +K+ N +++ IELRND I+L+ Q KQQ NIE Q NQQQKMCEMEAKEQEN G ++NEE+ + NANRALQ+EMIELR REISQS+QQ
Sbjct: 160 INNLRNEMESMKSENTEMRNYNIELRNDIIELRNANKQFKQQIDNIERQFINQQQKMCEMEAKEQENTGEIEQLNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSRQQ 271 HSP 3 Score: 47.7506 bits (112), Expect = 1.096e-6
Identity = 23/28 (82.14%), Postives = 24/28 (85.71%), Query Frame = 1
Query: 415 IQIQNEMEKCAYEIQSIQTNFGNAEFIN 498
I+IQNEMEKCA EI IQT FGNAEFIN
Sbjct: 348 IKIQNEMEKCANEIPPIQTKFGNAEFIN 375
BLAST of SMED30027083 vs. Planmine SMEST
Match:
SMESG000000294.1 (SMESG000000294.1)
HSP 1 Score: 181.8 bits (460), Expect = 9.664e-56
Identity = 121/129 (93.80%), Postives = 125/129 (96.90%), Query Frame = 3
Query: 3 KEQENTG*IEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGXXXXXXXXXXXXXXXLQNEMIELRREISQSKQQIDAFKQISEXXXXXXNIKV 389
KEQENT IE LNEEMVVIKNANRALQDEMIELRNDNIQLKR+ISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGEIN EIAAVNNANR+LQNEMIELR+EISQSKQQIDAFKQISEQQQLQQNIK+
Sbjct: 222 KEQENTAEIELLNEEMVVIKNANRALQDEMIELRNDNIQLKRQISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGEINGEIAAVNNANRSLQNEMIELRKEISQSKQQIDAFKQISEQQQLQQNIKI 350 HSP 2 Score: 69.3218 bits (168), Expect = 3.607e-14
Identity = 62/112 (55.36%), Postives = 74/112 (66.07%), Query Frame = 3
Query: 27 IEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRG---XXXXXXXXXXXXXXXLQNEMIELR-------REISQSKQQ 332
I L EM +K+ N +++ IELRND I+L+ Q KQQ NIE Q NQQQKMCEMEAKEQEN +NEE+ + NANRALQ+EMIELR R+ISQSKQQ
Sbjct: 160 INNLRNEMESMKSENTEMRNYNIELRNDIIELRNANKQFKQQIDNIERQFINQQQKMCEMEAKEQENTAEIELLNEEMVVIKNANRALQDEMIELRNDNIQLKRQISQSKQQ 271 HSP 3 Score: 47.3654 bits (111), Expect = 1.404e-6
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 1
Query: 415 IQIQNEMEKCAYEIQSIQTNFGNAEFIN 498
I+IQNEMEKCA EI+ IQT FGNAEFIN
Sbjct: 348 IKIQNEMEKCANEIRLIQTKFGNAEFIN 375
BLAST of SMED30027083 vs. Planmine SMEST
Match:
SMESG000015894.1 (SMESG000015894.1)
HSP 1 Score: 182.956 bits (463), Expect = 1.068e-55
Identity = 122/128 (95.31%), Postives = 126/128 (98.44%), Query Frame = 3
Query: 3 KEQENTG*IEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGXXXXXXXXXXXXXXXLQNEMIELRREISQSKQQIDAFKQISEXXXXXXNIK 386
KEQENTG IEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQS+QQNQNIELQLTNQ+QKMCEMEAKEQ+NRGEINEEIAAVNNANRA+QNEMIELRREISQ KQQIDAFKQISEQQQLQQNIK
Sbjct: 208 KEQENTGEIEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSRQQNQNIELQLTNQKQKMCEMEAKEQKNRGEINEEIAAVNNANRAIQNEMIELRREISQFKQQIDAFKQISEQQQLQQNIK 335 HSP 2 Score: 77.411 bits (189), Expect = 5.574e-17
Identity = 59/95 (62.11%), Postives = 74/95 (77.89%), Query Frame = 3
Query: 78 LQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGXXXXX---XXXXXXXXXXLQNEMIELR-------REISQSKQQ 332
L++E+ ++++NI+LKR+ SQSKQQ +NIELQL NQ+QKMCEMEAKEQEN GEI E + + NANRALQ+EMIELR REISQS+QQ
Sbjct: 163 LRNEIESMKSENIELKRKFSQSKQQIENIELQLRNQKQKMCEMEAKEQENTGEIEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSRQQ 257
BLAST of SMED30027083 vs. Planmine SMEST
Match:
SMESG000000559.1 (SMESG000000559.1)
HSP 1 Score: 182.57 bits (462), Expect = 1.338e-55
Identity = 122/129 (94.57%), Postives = 125/129 (96.90%), Query Frame = 3
Query: 3 KEQENTG*IEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGXXXXXXXXXXXXXXXLQNEMIELRREISQSKQQIDAFKQISEXXXXXXNIKV 389
KEQENT IE+LNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGEINEEIAAVNNANRALQNEMIELRREIS+ KQQIDAFKQISEQ QLQQNIK+
Sbjct: 222 KEQENTAEIEQLNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGEINEEIAAVNNANRALQNEMIELRREISKFKQQIDAFKQISEQHQLQQNIKI 350 HSP 2 Score: 69.707 bits (169), Expect = 2.465e-14
Identity = 63/112 (56.25%), Postives = 74/112 (66.07%), Query Frame = 3
Query: 27 IEELNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRG---XXXXXXXXXXXXXXXLQNEMIELR-------REISQSKQQ 332
I L EM +K N +++ IELRND I+L+ Q KQQ NIE Q NQQQKMCEMEAKEQEN ++NEE+ + NANRALQ+EMIELR REISQSKQQ
Sbjct: 160 INNLRNEMESMKRENTEMRNYNIELRNDIIELRNANEQFKQQIDNIERQFINQQQKMCEMEAKEQENTAEIEQLNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQ 271 HSP 3 Score: 47.3654 bits (111), Expect = 1.373e-6
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 1
Query: 415 IQIQNEMEKCAYEIQSIQTNFGNAEFIN 498
I+IQNEMEKCA EI+ IQT FGNAEFIN
Sbjct: 348 IKIQNEMEKCANEIRLIQTKFGNAEFIN 375
The following BLAST results are available for this feature:
Analyses
This transcript is derived from or has results from the following analyses
Sequences
The following sequences are available for this feature:
transcript sequence
>SMED30027083 ID=SMED30027083|Name=SMED30027083|organism=Schmidtea mediterranea sexual|type=transcript|length=498bp CGAAGGAGCAGGAAAACACAGGATAAATCGAGGAACTCAATGAGGAAATG GTCGTAATCAAGAATGCGAATCGCGCATTGCAAGATGAAATGATCGAATT GCGAAATGATAATATCCAATTGAAAAGAGAAATCAGCCAATCCAAACAAC AAAATCAAAATATCGAGCTGCAATTAACCAATCAGCAGCAGAAAATGTGC GAGATGGAAGCGAAGGAGCAGGAAAACCGAGGAGAAATCAATGAGGAAAT AGCGGCAGTCAATAATGCGAATCGCGCATTACAAAATGAAATGATCGAAT TGAGGAGGGAAATCAGCCAATCCAAACAGCAAATTGATGCATTTAAACAA ATCAGTGAACAGCAGCAACTGCAGCAGAATATAAAAGTGATTTATAGAAA TGATTGAATTTGTGATTCAGATTCAAAATGAAATGGAGAAATGCGCCTAT GAAATCCAGTCGATTCAAACAAATTTTGGAAATGCAGAATTTATAAAT back to top protein sequence of SMED30027083-orf-1
>SMED30027083-orf-1 ID=SMED30027083-orf-1|Name=SMED30027083-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=120bp
MVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKM CEMEAKEQENRGEINEEIAAVNNANRALQNEMIELRREISQSKQQIDAFK QISEQQQLQQNIKVIYRND* back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
Term Definition
PLANA:0000016 pharynx
PLANA:0000034 epidermis
PLANA:0000070 intestinal phagocyte
PLANA:0000204 ovary
PLANA:0002032 epidermal cell
PLANA:0003116 parenchymal cell