SMED30027074

Overview
NameSMED30027074
Smed IDSMED30027074
Length (bp)773
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30027074 (SMED30027074) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30027074 (SMED30027074) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30027074 (SMED30027074) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30027074 (SMED30027074) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30027074

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 13

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
cephalic gangliaSMED30027074SMESG000005752.1 dd_Smed_v4_15537_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
anterior sideSMED30027074SMESG000005752.1 dd_Smed_v4_15537_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30027074SMESG000005752.1 dd_Smed_v4_15537_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027074SMESG000005752.1 Contig20172newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027074SMESG000005752.1 Contig20172uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027074SMESG000005752.1 Contig4817newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027074SMESG000005752.1 Contig4817uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027074SMESG000040441.1 SMESG000035784.1 Contig4817newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027074SMESG000040441.1 SMESG000035784.1 Contig4817uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
enteric muscle cellSMED30027074SMESG000005752.1 dd_Smed_v4_15537_0_1dd_Smed_v4PMID:30471994
Scimone et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30027074SMESG000005752.1 dd_Smed_v6_15537_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynx musculatureSMED30027074SMESG000005752.1 dd_Smed_v6_15537_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
musculature systemSMED30027074SMESG000005752.1 dd_Smed_v6_15537_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30027074 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000643:95955..96727 +3865
Homology
BLAST of SMED30027074 vs. Planmine SMEST
Match: SMESG000005752.1 (SMESG000005752.1)

HSP 1 Score: 346.665 bits (888), Expect = 3.338e-109
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 3
Query:    3 EAFKEVLNEVSLENKIEENVFQIKAIEKQPHFLEELVTENIAEEEIKTIDAIVVPSDAMVPVLSEAVEQTQKYEQGEINADVAEIEQVIASKSVVGKVIESRAIELESEKPKLNLLXXXXXXXXXXXXXXXXXXXXXXXXXXXDAENQELEADFKAKESLALQNVSENVENICDYAGHXXXXXXXXXXXXXXXXXXXYDTIAIVEHPQTLEAMXXXXXXXXXXXXXXXXXVKTEKKLSTLSEAVEQNVKIEQGGVNE 773
            EAFKEVLNEVSLENKIEENVFQIKAIEKQPHFLEELVTENIAEEEIKTIDAIVVPSDAMVPVLSEAVEQTQKYEQGEINADVAEIEQVIASKSVVGKVIESRAIELESEKPKLNLLEESKIETEITEKEESIEDSFEIEIELSDAENQELEADFKAKESLALQNVSENVENICDYAGHLSEEELNEVYLENEVEDNVYDTIAIVEHPQTLEAMATENIIEQEINTIEATIVKTEKKLSTLSEAVEQNVKIEQGGVNE
Sbjct: 8240 EAFKEVLNEVSLENKIEENVFQIKAIEKQPHFLEELVTENIAEEEIKTIDAIVVPSDAMVPVLSEAVEQTQKYEQGEINADVAEIEQVIASKSVVGKVIESRAIELESEKPKLNLLEESKIETEITEKEESIEDSFEIEIELSDAENQELEADFKAKESLALQNVSENVENICDYAGHLSEEELNEVYLENEVEDNVYDTIAIVEHPQTLEAMATENIIEQEINTIEATIVKTEKKLSTLSEAVEQNVKIEQGGVNE 8496          

HSP 2 Score: 99.7525 bits (247), Expect = 1.911e-23
Identity = 114/249 (45.78%), Postives = 171/249 (68.67%), Query Frame = 3
Query:   21 LNEVSLENKIEENVFQIKAIEKQPHFLEELVTENIAEEEIKTIDAIVVPSDAMVPVLSEAVEQTQKYEQGEINADVAEIEQVIASKSVVGKVIESRAIELESEKPKLNLLXXXXXXXXXXXXXX---------XXXXXXXXXXXXXDAENQELEADFKAKESLALQNVSENVENICDYAGHXXXXXXXXXXXXXXXXXXXYDTIAIVEHPQTLEAMXXXXXXXXXXXXXXXXXVKTEKKLSTLSEAVEQ 740
            LNEV LEN++E+NV+   AI + P  LE + TENI E+EI TI+A +V ++  +  LSEAVEQ  K EQG +N D+ EI +  AS +++   +E++     SEK  +N+LE SK+E  + ++           SIEDSFEIE+ELSD EN+++EADFK K++  LQNVSEN+E   ++  ++ +E L EV +++++E+NV+ T  I E P+ LEA+  ENI+E+E++ +E T+VKTEK+ + L+EAVEQ
Sbjct: 8423 LNEVYLENEVEDNVYDTIAIVEHPQTLEAMATENIIEQEINTIEATIVKTEKKLSTLSEAVEQNVKIEQGGVNEDILEIIETRASTALIENSLENK-----SEKLDVNVLENSKVEETMKDEAVFEDIFVQEESIEDSFEIEMELSDLENEDVEADFKTKDNKELQNVSENLEITDEHEANIHDEALEEVSIQHKLEENVFKTEIIKEQPEFLEALVAENIVEEEMHNVEGTLVKTEKQQTVLAEAVEQ 8666          

HSP 3 Score: 88.9669 bits (219), Expect = 8.916e-20
Identity = 100/251 (39.84%), Postives = 158/251 (62.95%), Query Frame = 3
Query:    9 FKEVLNEVSLENKIEENVFQIKAIEKQPHFLEELVTENIAEEEIKTIDAIVVPSDAMVPVL-SEAVEQTQKYEQGEINADVAEIEQVIASKSVVGKVIESRAIELESEKPKLNLLXXXXXXXXXXXXXXXXXXXXXXXXXXXDAENQELEADFKAKESLALQNVSENVENICDYAGHXXXXXXXXXXXXXXXXXXXYDTIAIVEHPQTLEAMXXXXXXXXXXXXXXXXXVKTEKKLSTLSEAVEQNVKIEQ 758
            ++++L+ VSLENKIE +V + + I++Q  FLE LVT+NI EEE+ +++ + V  + +  VL SE+VE   K ++ EI  D+AEI+Q  ++ +VV   +E + I+ +++KP++N+L E+ I++E+  +                 EN  +EADFK K++  LQ VSENVE I D     + +E           ++V +T  I E+PQ+LEA   E+I+E+EINTIEATI+K + +L  LSEAVEQ  ++EQ
Sbjct: 7191 YQDLLDVVSLENKIENDVLETRVIKEQSEFLEPLVTDNIPEEEMNSVELVTVKPEELTTVLISESVE---KVDESEI-IDIAEIKQTDSTTTVVENFLEIQVIDEKADKPEINILTETNIQSEVEMETALEH-----------TENVNVEADFKTKDNEELQIVSENVE-IVDEHETETCKEEFYEAPLENKMESVIETELIEEYPQSLEASNVEDIVEEEINTIEATIIKPKNELLALSEAVEQIERVEQ 7425          

HSP 4 Score: 82.4185 bits (202), Expect = 1.417e-17
Identity = 106/268 (39.55%), Postives = 163/268 (60.82%), Query Frame = 3
Query:    9 FKEVLNEVSLENKIEENVFQIKAIEKQPHFLEELVTENIAEEEIKTIDAIVVPSDAMVPVLSEAVEQTQKYEQGEINADVAEIEQVIASKSVV-GKVIESR------------AIELESEKPKLNLLXXXXXXXXXXXXXXXXXXXXXXXXXXXDAENQELEADFKAKESLALQNVSENVENICDYAGHXXXXXXXXXXXXXXXXXXXYDTIAIVEHPQTLEAMXXXXXXXXXXXXXXXXXVKTEKKLSTLSEAVEQNVKIEQGGVNE 773
            ++E L+EV LEN  E NVF+ + I++ P FLE L  + +A EE++ ++AI+V    ++ VLSEAVEQ +  EQ EI  D+A IEQ I   +V+  +V+E++             IE+E+  P+           E  EKEESI+DSFEIE+ELS+ +N++++ +FK K+ +     SEN+E + +     S E ++EV L + VE N+++T  I E PQ LE     +I+E+E  ++E TIVK E K+  LSEA+EQ   ++Q  +NE
Sbjct: 7874 YEERLDEVQLENVTELNVFKTEIIQEHPQFLESLTNDTMAGEEMRILEAIIVAPKEVIKVLSEAVEQIETIEQSEIQDDLANIEQDIVLANVIEAQVLETKLEQADEYISMETKIEIETPNPE-------ATTEETIEKEESIDDSFEIEMELSEVKNEDVKEEFKMKDKVEHHGASENIEIVHEQKAETSGETMDEVCLASRVEQNLFETQVIEEIPQFLETTIISDIVEEETKSVEGTIVKPEVKMEILSEAIEQTQNLKQSEINE 8134          

HSP 5 Score: 80.4925 bits (197), Expect = 7.084e-17
Identity = 75/167 (44.91%), Postives = 116/167 (69.46%), Query Frame = 3
Query:   15 EVLNEVSLENKIEENVFQIKAIEKQPHFLEELVTENIAEEEIKTIDAIVVPSDAMVPVLSEAVEQTQKYEQGEINADVAEIEQVIASKSVVGKVIESRAIELESEKPKLNLLXXXXXXXXXXXXXXXXXXXXXXXXXXXDAENQELEADFKAKESLALQNVSENVEN 515
            E L EVS+++K+EENVF+ + I++QP FLE LV ENI EEE+  ++  +V ++    VL+EAVEQ ++ E  +   +V+EI+Q + S +V+  V+E+   E E ++  + ++       +  E+EESIEDSFEIE+ELSD EN+++EA+FK K++  LQ +SENVEN
Sbjct: 8602 EALEEVSIQHKLEENVFKTEIIKEQPEFLEALVAENIVEEEMHNVEGTLVKTEKQQTVLAEAVEQIKELEHDK--DEVSEIKQALVSSAVMEDVLETNIHESEVKELDIKVI-------DSIEREESIEDSFEIEMELSDVENEDVEAEFKTKDNKELQILSENVEN 8759          

HSP 6 Score: 78.9518 bits (193), Expect = 2.209e-16
Identity = 114/262 (43.51%), Postives = 170/262 (64.89%), Query Frame = 3
Query:    3 EAFKEVLNEVSLENKIEENVFQIKAIEKQPHFLEELVTENIAEEEIKTIDAIVVPSDAMVPVLSEAVEQTQKYEQGEINADVAEIEQVIASKSVVGKVIESRAIELESEKPKLNLLXXXXXXXXXXXX----------XXXXXXXXXXXXXXXDAENQELEADFKAKESLALQNVSENVENICDYAGHXXXXXXXXXXXXXXXXXXXYDTIAIVEHPQTLEAMXXXXXXXXXXXXXXXXXVKTEKKLSTLSEAVEQNVKIEQ 758
            E F+E  +EV+LE+K EENVF+ + IE+ P F+E L+T+NI +E +             V VLSE VEQTQK ++ E+  ++ EI+ + A  S++  ++E +  E +SE P++N+LEE K E E+ E           +ESIE SFEIE+ELSD E + ++ADF+ K++  LQ +SEN E   ++     +EEL EV LE+++E+N   +  I EHPQ LE    ENI+E+EINT+EATIV++E++L  LSE +EQ  K+E+
Sbjct: 8766 ETFQE-FDEVNLESKAEENVFKTQVIEEHPQFVEALITDNIEDEVVND-----------VAVLSEGVEQTQKLDENEVKEEIPEIKPITALTSLIKNILEDKVCEHKSEMPEVNVLEEVKTEMEVVETEDVIKEIIEKQESIEGSFEIEMELSDIEREIVKADFETKDNKELQVLSENAEIQEEHETEKCKEELYEVNLESKMEENASMSKVIEEHPQILEKEINENIVEEEINTVEATIVRSEEQLPVLSEVIEQIEKLEK 9015          

HSP 7 Score: 73.1738 bits (178), Expect = 1.968e-14
Identity = 107/265 (40.38%), Postives = 165/265 (62.26%), Query Frame = 3
Query:    3 EAFKEVLNEVSLENKIEENVFQIKAIEKQPHFLEELVTENIAEEEIKTIDAIVVPSDAMVPVLSEAVEQTQKYEQGEINADVAEIEQVIASKSVVGKVIESRAIELESEKPKLNLLXXXXXXXXXXXX---------XXXXXXXXXXXXXXXDAENQELEADFKAKESLALQNVSENVENICDYAGHXXXXXXXXXXXXXXXXXXXYDTIAIVEHPQTLEAMXXXXXXXXXXXXXXXXXVKTEKKLSTLSEAVEQNVKIEQGGVN 770
            E   E ++EV L +++E+N+F+ + IE+ P FLE  +  +I EEE K+++  +V  +  + +LSEA+EQTQ  +Q EIN +++EI+   AS  V+    E   + L+ E   + +LEES  + E+TE           ES+EDSFE+E+EL D E+  +EA+FK K+S   + VS  +E + ++     +E LNEV LEN++E+NV+   AI + P  LE + TENI E+EI TI+A +V ++  +  LSEAVEQ  K EQG +N
Sbjct: 8055 ETSGETMDEVCLASRVEQNLFETQVIEEIPQFLETTIISDIVEEETKSVEGTIVKPEVKMEILSEAIEQTQNLKQSEIN-EISEIKPNAASVLVIDNSPEENVLGLKPETFDVPILEESNKQDEVTEMEVKGNIVVNAESLEDSFEMEMELLDVESANVEAEFKTKDSEDFKIVSGCIETVDEHEAEAFKEVLNEVSLENKIEENVFQIKAIEKQPHFLEELVTENIAEEEIKTIDAIVVPSDAMVPVLSEAVEQTQKYEQGEIN 8318          

HSP 8 Score: 72.4034 bits (176), Expect = 4.234e-14
Identity = 110/262 (41.98%), Postives = 154/262 (58.78%), Query Frame = 3
Query:    3 EAFKEVLNEVSLENKIEENVFQIKAIEKQPHFLEELVTENIAEEEIKTIDAIVVPSDAMVPVLSEAVEQTQKYEQGEINADVAEIEQVIASKSVVGKVIESRAIELESEKPKLNLLXXXXXXXXXXXXXXXXXXXXXXXXXXXDA----------ENQELEADFKAKESLALQNVSENVENICDYAGHXXXXXXXXXXXXXXXXXXXYDTIAIVEHPQTLEAMXXXXXXXXXXXXXXXXXVKTEKKLSTLSEAVEQNVKIEQ 758
            E  KE   E  LENK+E +V + + IE+ P  LE    E+I EEEI TI+A ++     +  LSEAVEQ ++ EQ EI  +  EI+Q     +V     E +  E +SEKP++N+ EE KIE EI + EE  E++ E E  + D+          E++ +EADFK K++  LQ VSENVE I D     + EE           +NV++T  I ++PQ LEA   E+I+E+EINTIEATI+K + +L  LSEAVEQ  ++EQ
Sbjct: 7352 ETCKEEFYEAPLENKME-SVIETELIEEYPQSLEASNVEDIVEEEINTIEATIIKPKNELLALSEAVEQIERVEQDEIKDEDLEIKQEETFTAVFENNSEDKVFETKSEKPEINVFEEMKIEEEIVKIEEVFEETIEKEESIEDSFEIEIELSDVEHENVEADFKTKDNEELQIVSENVE-IVDEHEAKTCEEELYKKPLESKVENVFETKVIEQYPQALEASNVEDIVEEEINTIEATIIKPKNELLALSEAVEQIERVEQ 7611          

HSP 9 Score: 67.0106 bits (162), Expect = 2.281e-12
Identity = 71/169 (42.01%), Postives = 101/169 (59.76%), Query Frame = 3
Query:   36 LENKIEENVFQIKAIEKQPHFLEELVTENIAEEEIKTIDAIVVPSDAMVPVLSEAVEQTQKYEQGEINADVAEIEQVIASKSVVGKVIESRAIELESEKPKLNLLXXXXXXXXXXXXXXXXXXXXXXXXXXXDA----------ENQELEADFKAKESLALQNVSENVE 512
            LE+K+E NVF+ K IE+ P  LE    E+I EEEI TI+A ++     +  LSEAVEQ ++ EQ EI  +  EI+Q     +V     E +  E +SEKP++N+ EE KIE EI + EE  E++ E E  + D+          E++ +EADFK K++  LQ VSEN+E
Sbjct: 7549 LESKVE-NVFETKVIEQYPQALEASNVEDIVEEEINTIEATIIKPKNELLALSEAVEQIERVEQDEIKDEDLEIKQEETFTAVFENNSEDKFFETKSEKPEINVFEEMKIEEEIVKIEEVFEETIEKEDSIEDSFEIEIELSDVEHENVEADFKTKDNEELQIVSENIE 7716          

HSP 10 Score: 52.7582 bits (125), Expect = 1.484e-7
Identity = 79/213 (37.09%), Postives = 129/213 (60.56%), Query Frame = 3
Query:  144 TIDAIVVPSDAMVPVLSEAVEQTQKYEQGEINADVAEIEQVIASKSVVGKVIESRAIELESEKPKLNLLXXXXXXXXXXXXXXXXXXXXXXXXXXXDAENQELEADF-------KAKESLALQNVSENVENICDYAGHXXXXXXXXXXXXXXXXXXXYDTIAIVEHPQTLEAMXXXXXXXXXXXXXXXXXVKTEKKLSTLSEAVEQNVKIEQG 761
            + +AI++  D M  +LSE+VEQ +K EQ EI  + AE+ Q  A ++V+  V++ +A E ++ KP+ ++LE + ++ EI + E  +E+S E        + + L+  F       K + ++ LQNVSE++EN+  +A ++ EE L+EV LEN  E NV+ T  I EHPQ LE++  + +  +E+  +EA IV  ++ +  LSEAVEQ   IEQ 
Sbjct: 7743 STEAIIIKPDDMKNILSESVEQIEKVEQCEIKDEFAEVMQDKAFEAVLENVLDVKATEPKTTKPERSILEIANVQVEIMKDESFMEESIE--------KEESLQVSFESENEYAKTESNVDLQNVSEDIENLEQHATNIYEERLDEVQLENVTELNVFKTEIIQEHPQFLESLTNDTMAGEEMRILEAIIVAPKEVIKVLSEAVEQIETIEQS 7947          

HSP 11 Score: 50.0618 bits (118), Expect = 9.529e-7
Identity = 46/109 (42.20%), Postives = 68/109 (62.39%), Query Frame = 3
Query:    3 EAFKEVLNEVSLENKIEENVFQIKAIEKQPHFLEELVTENIAEEEIKTIDAIVVPSDAMVPVLSEAVEQTQKYEQGEINADVAEIEQVIASKSVVGKVIESRAIELESE 329
            E  KE L EV+LE+K+EEN    K IE+ P  LE+ + ENI EEEI T++A +V S+  +PVLSE +EQ +K E+  I     E E+  A  ++V  + E++A   E++
Sbjct: 8941 EKCKEELYEVNLESKMEENASMSKVIEEHPQILEKEINENIVEEEINTVEATIVRSEEQLPVLSEVIEQIEKLEKDVIKDIHLETEEDKAVLTMVDAMEETKAESFETK 9049          
The following BLAST results are available for this feature:
BLAST of SMED30027074 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027074 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027074 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027074 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027074 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027074 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027074 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027074 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027074 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027074 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027074 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027074 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027074 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30027074 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000005752.13.338e-109100.00SMESG000005752.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30027074 ID=SMED30027074|Name=SMED30027074|organism=Schmidtea mediterranea sexual|type=transcript|length=773bp
CTGAAGCATTCAAAGAAGTATTAAATGAAGTAAGTTTGGAAAATAAGATA
GAAGAGAATGTGTTTCAAATTAAAGCCATTGAAAAACAGCCACATTTTCT
AGAAGAATTGGTAACAGAAAATATTGCTGAGGAAGAAATTAAGACTATTG
ACGCAATAGTCGTGCCATCAGATGCGATGGTTCCAGTTTTATCTGAAGCA
GTAGAACAAACGCAAAAGTATGAGCAAGGAGAAATTAATGCTGATGTAGC
AGAAATAGAGCAAGTCATTGCATCTAAATCTGTTGTTGGAAAAGTAATTG
AAAGCAGAGCCATCGAGCTTGAGTCAGAAAAACCAAAGTTAAATTTGTTG
GAAGAATCAAAAATAGAAACTGAAATAACTGAAAAGGAAGAATCCATAGA
GGACTCGTTCGAAATTGAAATCGAATTATCAGATGCAGAAAACCAAGAGC
TAGAAGCAGATTTCAAGGCAAAAGAAAGTTTAGCACTTCAAAATGTTTCT
GAAAATGTGGAGAATATTTGTGATTATGCAGGACATCTGAGTGAAGAAGA
GTTGAATGAAGTATACTTGGAAAATGAAGTCGAAGACAATGTATATGACA
CTATAGCAATCGTAGAGCATCCACAAACTCTAGAAGCGATGGCTACTGAG
AATATTATCGAACAAGAAATAAATACCATTGAAGCAACGATTGTGAAAAC
CGAAAAGAAGTTATCAACTCTATCTGAAGCTGTTGAACAAAATGTGAAGA
TAGAACAGGGTGGAGTAAATGAG
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protein sequence of SMED30027074-orf-1

>SMED30027074-orf-1 ID=SMED30027074-orf-1|Name=SMED30027074-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=257bp
EAFKEVLNEVSLENKIEENVFQIKAIEKQPHFLEELVTENIAEEEIKTID
AIVVPSDAMVPVLSEAVEQTQKYEQGEINADVAEIEQVIASKSVVGKVIE
SRAIELESEKPKLNLLEESKIETEITEKEESIEDSFEIEIELSDAENQEL
EADFKAKESLALQNVSENVENICDYAGHLSEEELNEVYLENEVEDNVYDT
IAIVEHPQTLEAMATENIIEQEINTIEATIVKTEKKLSTLSEAVEQNVKI
EQGGVNE
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000101muscle cell
PLANA:0000140anterior region of the whole animal
PLANA:0000428musculature system
PLANA:0000429neoblast
PLANA:0000478pharynx musculature
PLANA:0003104enteric muscle cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 223..243
NoneNo IPR availableCOILSCoilCoilcoord: 133..153