C2H2-type domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30027056 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Homology
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A4Y2E3I7 (Uncharacterized protein (Fragment) OS=Araneus ventricosus OX=182803 GN=AVEN_94904_1 PE=4 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.156e-25 Identity = 92/298 (30.87%), Postives = 147/298 (49.33%), Query Frame = 3 Query: 630 VQIALTDKLVNKLQIEIKKMGSVKVQFTALIQFEK---DGEIK---DNFFSNSACVFSDSFLADGVS----RLNEKIEKFTYLGSGWRVVKIREIDFILTTYYPVSRLAGHSFIPTPESLVGKKAIVNVKNTDHSCFIYSVLSILKRDIVLKNRERVSSYTTFMDELNYDSITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHPHLALIHRTKVIGGNPINLLLLQDGDNFHYTAIFNLNRLLNCHSSSECNTRIRVKWCPHCLNGFYYDKTFKAHVNLCTKN 1493 V+ + D +V++LQ + ++K + I+F + DG+++ F S S + D + ++ E +++F GSGW + ++ TY+P LA S+IP P L KKA++N+KNTD CF++SVL+ L V KN +RVS YT+ EL +T CP++ C +P E+ N NL INVF Y D + P ++ +K INLL + GD+ HY I N++RLL N + + +C CL+ F + K H+ C ++ Sbjct: 243 VRPQIHDMIVDELQ----EKRAIKWYCVSKIRFSRETPDGDVEYCTPYFRSKVVIELDTSMIGDHIEQAFDKIKESVDEFLKNGSGWVFDSVIHMELKTATYHP---LAPSSYIPLPSKLAAKKAVINIKNTDQKCFVWSVLAALHP--VGKNADRVSHYTSMEQELQLGKVT-CPVQPCKVPIIEKLN---NLRINVFGY--------EDDEVFP-------LYISKREDTRVINLLYITQGDDKHYCLIKNMSRLLG----DLTNHKAKAFYCYSCLHRFTTESLLKDHLPYCKEH 508
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A4Y2ETR7 (Uncharacterized protein OS=Araneus ventricosus OX=182803 GN=AVEN_91292_1 PE=4 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.495e-25 Identity = 92/298 (30.87%), Postives = 147/298 (49.33%), Query Frame = 3 Query: 630 VQIALTDKLVNKLQIEIKKMGSVKVQFTALIQFEK---DGEIK---DNFFSNSACVFSDSFLADGVS----RLNEKIEKFTYLGSGWRVVKIREIDFILTTYYPVSRLAGHSFIPTPESLVGKKAIVNVKNTDHSCFIYSVLSILKRDIVLKNRERVSSYTTFMDELNYDSITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHPHLALIHRTKVIGGNPINLLLLQDGDNFHYTAIFNLNRLLNCHSSSECNTRIRVKWCPHCLNGFYYDKTFKAHVNLCTKN 1493 V+ + D +V++LQ + ++K + I+F + DG+++ F S S + D + ++ E +++F GSGW + ++ TY+P LA S+IP P L KKA++N+KNTD CF++SVL+ L V KN +RVS YT+ EL +T CP++ C +P E+ N NL INVF Y D + P ++ +K INLL + GD+ HY I N++RLL N + + +C CL+ F + K H+ C ++ Sbjct: 347 VRPQIHDMIVDELQ----QKKAIKWYCVSKIRFSRETPDGDVEYCMPYFRSKVVIELDTSMIGDHIEQAFDKIKESVDEFLKNGSGWVFDSVIHMELKTATYHP---LAPSSYIPLPSKLAAKKAVINIKNTDQKCFVWSVLAALHP--VGKNADRVSHYTSMEQELRLGKVT-CPVQPCKVPIIEKFN---NLRINVFGY--------EDDEVFP-------LYISKREDTRVINLLYITQGDDKHYCLIKNMSRLLG----DLTNHKAKAFYCYSCLHRFTTESLLKDHLPYCKEH 612
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A4Y2GN36 (Uncharacterized protein (Fragment) OS=Araneus ventricosus OX=182803 GN=AVEN_232847_1 PE=4 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.821e-25 Identity = 87/283 (30.74%), Postives = 140/283 (49.47%), Query Frame = 3 Query: 675 EIKKMGSVKVQFTALIQFEK---DGEIK---DNFFSNSACVFSDSFLADGVS----RLNEKIEKFTYLGSGWRVVKIREIDFILTTYYPVSRLAGHSFIPTPESLVGKKAIVNVKNTDHSCFIYSVLSILKRDIVLKNRERVSSYTTFMDELNYDSITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHPHLALIHRTKVIGGNPINLLLLQDGDNFHYTAIFNLNRLLNCHSSSECNTRIRVKWCPHCLNGFYYDKTFKAHVNLCTKN 1493 E+++ ++K + I+F + DG+++ F S S + D + ++ E +++F GSGW + ++ Y+P LA S+IP P L KKA++N+KNTD CF++SVL+ L V KN ERVS Y + EL ++T CP++ C +P E+ N NL INVF Y D + P ++ +K INLL + GD+ HY I N++RLL N + + +C CL+ F + K H++ C ++ Sbjct: 226 ELQEKRAIKWYCVSKIRFSRETPDGDVEYCTPYFRSKVVIELDTSMIGDHIEQAFDKIKESVDEFLKNGSGWVFDSVIHMELKTAAYHP---LAPSSYIPLPSKLAAKKALINIKNTDQKCFVWSVLAALHP--VGKNAERVSHYVSMEQELRLGNVT-CPVQPCKVPIIEKLN---NLRINVFGY--------EDDEVFP-------LYISKREDIQAINLLYITQGDDKHYCLIKNMSRLL----GDLTNHKAKAFYCYSCLHRFSAESLLKDHLSYCKEH 480
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A4Y2WJZ7 (Uncharacterized protein OS=Araneus ventricosus OX=182803 GN=AVEN_144343_1 PE=4 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 8.362e-24 Identity = 92/298 (30.87%), Postives = 145/298 (48.66%), Query Frame = 3 Query: 630 VQIALTDKLVNKLQIEIKKMGSVKVQFTALIQFEK---DGEIK---DNFFSNSACVFSDSFLADGVS----RLNEKIEKFTYLGSGWRVVKIREIDFILTTYYPVSRLAGHSFIPTPESLVGKKAIVNVKNTDHSCFIYSVLSILKRDIVLKNRERVSSYTTFMDELNYDSITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHPHLALIHRTKVIGGNPINLLLLQDGDNFHYTAIFNLNRLLNCHSSSECNTRIRVKWCPHCLNGFYYDKTFKAHVNLCTKN 1493 V+ + D +V++LQ + ++K + I+F + DG+++ F S S + D + ++ E +++F GSGW + ++ TY+P LA S+IP P L KKA++N+KNTD CFI+SVL+ L V KN ERVS Y + EL ++T CP++ C +P E+ + NL INVF Y D + P L + R + INLL + GD+ HY I N++RLL + +C CL+ F + K H+ C ++ Sbjct: 232 VRPQIHDMIVDELQ----QKKAIKWYCVSKIRFSRETPDGDVEYCTPYFRSKVVIELDTSMIGDHIEQAFDKIKESVDEFLKNGSGWVFDSVIHMELKTATYHP---LAPSSYIPLPSKLAAKKALINIKNTDQKCFIWSVLAALHP--VGKNAERVSHYVSMEQELRLGNVT-CPVQPCKVPIIEKLS---NLRINVFGY--------EDDEVFP----LYISKREDI---QVINLLYITQGDDKHYCLIKNMSRLLG----DLTKHNPKAFYCYSCLHRFSAESLLKDHLPYCKEH 497
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A4Y2S2Z6 (Uncharacterized protein (Fragment) OS=Araneus ventricosus OX=182803 GN=AVEN_82606_1 PE=4 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 2.462e-23 Identity = 89/298 (29.87%), Postives = 145/298 (48.66%), Query Frame = 3 Query: 630 VQIALTDKLVNKLQIEIKKMGSVKVQFTALIQFEK---DGEIK---DNFFSNSACVFSDSFLADGVS----RLNEKIEKFTYLGSGWRVVKIREIDFILTTYYPVSRLAGHSFIPTPESLVGKKAIVNVKNTDHSCFIYSVLSILKRDIVLKNRERVSSYTTFMDELNYDSITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHPHLALIHRTKVIGGNPINLLLLQDGDNFHYTAIFNLNRLLNCHSSSECNTRIRVKWCPHCLNGFYYDKTFKAHVNLCTKN 1493 V+ + D +V++LQ + ++K + I+F + DG+++ F S S + D + ++ E +++F GSGW + ++ TY+P LA S+IP P L KKA++N+KNTD CF++SVL+ L V + ERV YT+ EL ++T CP++ C +P E+ N NL INVF Y + + L++ +K INLL + GD+ HY I N++RLL + T +C CL+ F + K H+ C ++ Sbjct: 215 VRPQIHDMIVDELQ----QKKAIKWYCVSKIRFSRETPDGDVEYCTPYFRSKVVIELDTSMIGDHIEQAFEKIKESVDEFLKNGSGWVFDSVIHMELKTATYHP---LAPSSYIPLPSKLAAKKALINIKNTDQKCFVWSVLAAL-HPAVGPHPERVYHYTSLEQELRLGNVT-CPVQPCKVPIIEKLN---NLRINVFGYEDD---------------EVFLLYISKREEIQVINLLYITQGDDKHYCLIKNMSRLLGDLTKFNGETF----YCYSCLHRFTTESFLKNHLPYCNEH 481
BLAST of C2H2-type domain-containing protein vs. Ensembl Nematostella
Match: EDO44110 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RWZ0]) HSP 1 Score: 98.9821 bits (245), Expect = 1.106e-22 Identity = 74/226 (32.74%), Postives = 114/226 (50.44%), Query Frame = 3 Query: 828 IEKFTYLGSGWRVVKIREIDFILTTYYPVSRLAGHSFIPTPESLVGKKAIVNVKN-TDHSCFIYSVLSILKRDIVLKNRERVSSYTTFMDE-LNYDSITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHP-HLALIHRTKVIGGNPINLLLLQDGDNFHYTAIFNLNRLLNCHSSSECNTRIRVKWCPHCLNGFYYDKTFKAHVNLCTKNK 1496 +EKF GSGWR ++ D + P L+G S+IP P L KKAI+NVKN +DH CF ++V S + + ER++ T + N+ I + P+ L I +FE+ N A+NV+ Y + +P ++ H T+ INLLL+ D + HY I N++RLL SS + + ++CP CLN F+ + + H C+KN+ Sbjct: 9 VEKFQKQGSGWRFDQVEYFDINID---PXKPLSGSSYIPLPSELASKKAIINVKNESDHECFKWAVTSAIYPKET--HPERLNKQMTESSKNFNWSGI-EFPISLKQIDEFEKQNPH---AVNVYGYEGSV------------YPLRISKRHDTRT-----INLLLISDDETNHYCWIKNMSRLL---SSQIGDHQHASEFCPRCLNSFWCKEALERHSEYCSKNE 205
BLAST of C2H2-type domain-containing protein vs. Ensembl Nematostella
Match: EDO34080 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SQD5]) HSP 1 Score: 96.6709 bits (239), Expect = 4.058e-21 Identity = 74/226 (32.74%), Postives = 113/226 (50.00%), Query Frame = 3 Query: 828 IEKFTYLGSGWRVVKIREIDFILTTYYPVSRLAGHSFIPTPESLVGKKAIVNVKNT-DHSCFIYSVLSILKRDIVLKNRERVSSYTTFMDE-LNYDSITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHP-HLALIHRTKVIGGNPINLLLLQDGDNFHYTAIFNLNRLLNCHSSSECNTRIRVKWCPHCLNGFYYDKTFKAHVNLCTKNK 1496 +EKF GSGWR ++ D + + P L+G S+IP L KKAI+NVKN DH CF ++V S + + ER++ T + N+ I + P+ L I +FE+ N A+NV+ Y + +P ++ H T+ INLLL+ D + HY I N++RLL SS + + ++CP CLN F+ K + H C+KN+ Sbjct: 362 VEKFQKQGSGWRFDQVEYFDINIDPFKP---LSGSSYIPLLSELASKKAIINVKNENDHECFKWAVTSAIYPKET--HPERLNKQMTESSKNFNWSGI-EFPISLKQIDEFEKQNPH---AVNVYGYEGSV------------YPLRISKRHDTRT-----INLLLISDDETNHYCWIKNMSRLL---SSQIGDHQHASEFCPRCLNSFWCKKALERHSEYCSKNE 558
BLAST of C2H2-type domain-containing protein vs. Ensembl Nematostella
Match: EDO48021 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RKP4]) HSP 1 Score: 90.5077 bits (223), Expect = 2.544e-19 Identity = 75/231 (32.47%), Postives = 109/231 (47.19%), Query Frame = 3 Query: 807 VSRLNEKIEKFTYLGSGWRVVKIREIDFILTTYYPVSRLAGHSFIPTPESLVGKKAIVNVKN-TDHSCFIYSVLSIL----KRDIVLKNRERVSSYTTFMDELNYDSITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHPHLALIHRTKVIGGNPINLLLLQDGDNFHYTAIFNLNRLLNCHSSSECNTRIRVKWCPHCLNGFYYDKTFKAHVNLC 1484 V+ L E IE+F GSGWR ++ D + + P L+G S+I P L K+AI+NVKN DH CF ++V S + K L + R SS + ++ I + P+ L I KFE+ N +NVF YN + P +K INLLL+ + + HY I +++RLL SS N + ++CP CLN F+ K + H C Sbjct: 198 VNYLLELIERFQNKGSGWRFDQVEYFDINIDPFEP---LSGSSYIQLPSKLASKQAIINVKNKNDHECFKWAVTSAMYPRGKDPQRLNEQIRESS-----KKFDWAGI-EFPVSLKQIDKFEKQNP---YTVNVFGYNG---------EVFPRRI-------SKKRNARVINLLLISNDETNHYCWIKDMSRLL---SSQINNHQHATEFCPRCLNPFWCKKALEKHSEYC 397
BLAST of C2H2-type domain-containing protein vs. Ensembl Nematostella
Match: EDO46109 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RR56]) HSP 1 Score: 88.5817 bits (218), Expect = 2.732e-18 Identity = 78/242 (32.23%), Postives = 113/242 (46.69%), Query Frame = 3 Query: 780 FSDSFLADGVSRLNEKIEKFTYLGSGWRVVKIREIDFILTTYYPVSRLAGHSFIPTPESLVGKKAIVNVKN-TDHSCFIYSVLSIL--KRDIVLKNRERVSSYTTFMDELNYDSITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHPHLALIHRTKVIGGNPINLLLLQDGDNFHYTAIFNLNRLLNCHSSSECNTRIRVKWCPHCLNGFYYDKTFKAHVNLCTKNK 1496 FSD F A + L +EKF GSGW+ ++ D + + P L+G S++ P+ L KKAI+NV+N DH CF ++V S + KRD N +R+S E S + P+ L I KFER N +NVF Y K++ + P N INLLL+ +G+ HY I ++ L++ +TR C CLN F K + H C+KN+ Sbjct: 570 FSDLFNA-MTNPLIGLVEKFQKQGSGWQFDRVEYFDINIDPFDP---LSGSSYVELPKELAVKKAIINVRNENDHKCFKWAVTSAVYPKRD----NPQRLSRKMMENSERFDWSGIEFPVSLRQIDKFERQNPH---TVNVFTYE---EKKICPLRISGKDPF------------NAINLLLISNGETSHYCWIKDVMSLVSSQIDKYHHTRF---LCFRCLNSFRCKKALEKHYEYCSKNE 782
BLAST of C2H2-type domain-containing protein vs. Ensembl Nematostella
Match: EDO34977 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SMS5]) HSP 1 Score: 87.8113 bits (216), Expect = 3.390e-18 Identity = 71/226 (31.42%), Postives = 106/226 (46.90%), Query Frame = 3 Query: 828 IEKFTYLGSGWRVVKIREIDFILTTYYPVSRLAGHSFIPTPESLVGKKAIVNVKN-TDHSCFIYSVLSIL--KRDIVLKNRERVSSYTTFMDELNYDSITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHPHLALIHRTKVIGGNPINLLLLQDGDNFHYTAIFNLNRLLNCHSSSECNTRIRVKWCPHCLNGFYYDKTFKAHVNLCTKNK 1496 +EKF GSGW+ ++ D + + P L+G S++ P+ L KKAI+NV+N DH CF ++V S + KRD N +R+S E S + P+ L I KFER N +NVF Y K++ + P N INLLL+ +G+ HY I ++ L++ +TR C CLN F + + H C+KN+ Sbjct: 158 VEKFQKQGSGWQFDRVEYFDINIDPFDP---LSGSSYVELPKELAVKKAIINVRNENDHKCFKWAVTSAVYPKRD----NPQRLSRKMMENSERFDWSGIEFPVSLRQIDKFERQNPH---TVNVFTYEE---KKICPLRISGKDPF------------NAINLLLISNGETSHYCWIKDVMSLVSSQIDKYHHTRF---LCFRCLNSFRCEMALEKHYEYCSKNE 355
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000066165.1 (SMESG000066165.1) HSP 1 Score: 736.102 bits (1899), Expect = 0.000e+0 Identity = 412/418 (98.56%), Postives = 412/418 (98.56%), Query Frame = 3 Query: 192 MESYYGHRFYGIDFFICPKCDTAQDIEYLEFYKKHSSHLNQFKINKKALFQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPADKIVPCIPAXXXXXXXXXSDDETEYNQIGGSVXXXXXXXXXXXXXLRGSRKNIRFDLENQNLVQIALTDKLVNKLQIEIKKMGSVKVQFTALIQFEKDGEIKDNFFSNSACVFSDSFLADGVSRLNEKIEKFTYLGSGWRVVKIREIDFILTTYYPVSRLAGHSFIPTPESLVGKKAIVNVKNTDHSCFIYSVLSILKRDIVLKNRERVSSYTTFMDELNYDSITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHPHLALIHRTKVIGGNPINLLLLQDGDNFHYTAIFNLNRLLNCHSSSECNTRIRVKWCPHCLNGF 1445 MESYYGHRFYGIDFFICPKCDTAQDIEYLEFYKKHSSHLNQFKINKK LFQMINAKNASNNNTNNTKITKNNNTTVTKK KRPADKIVPCIPAKIKKIEIIISDDETEYNQIGGSVNIEINDEPEIEIDLRGSRKNIRFDLENQNLVQIALTDKLVNKLQIEIKKMGSVKVQFTALIQFEKDGEIKDNFFSNS CVFSDSFLADGVSRLNEKIEKFTYLGSGWRVVKIREIDFILTTYYPVSRLAGHSFIPTPESLVGKKAIVNVKNTDHSCFIYSVLSILKRDIVLKNRERVSSYTTFMDELNYDSITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHPHLALIHRTKVIGGNPINLLLLQDGDNFHYTAIFNLNRLLNC SSSECNTRI VKWCPHCLNG Sbjct: 1 MESYYGHRFYGIDFFICPKCDTAQDIEYLEFYKKHSSHLNQFKINKKTLFQMINAKNASNNNTNNTKITKNNNTTVTKKLKRPADKIVPCIPAKIKKIEIIISDDETEYNQIGGSVNIEINDEPEIEIDLRGSRKNIRFDLENQNLVQIALTDKLVNKLQIEIKKMGSVKVQFTALIQFEKDGEIKDNFFSNSVCVFSDSFLADGVSRLNEKIEKFTYLGSGWRVVKIREIDFILTTYYPVSRLAGHSFIPTPESLVGKKAIVNVKNTDHSCFIYSVLSILKRDIVLKNRERVSSYTTFMDELNYDSITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHPHLALIHRTKVIGGNPINLLLLQDGDNFHYTAIFNLNRLLNCRSSSECNTRIHVKWCPHCLNGL 418
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000037212.1 (SMESG000037212.1) HSP 1 Score: 727.628 bits (1877), Expect = 0.000e+0 Identity = 399/441 (90.48%), Postives = 405/441 (91.84%), Query Frame = 3 Query: 114 ITYLSGRLYKNYCQSGIGHNSKCHTTMESYYGHRFYGIDFFICPKCDTAQDIEYLEFYKKHSSHLNQFKINKKALFQMXXXXXXXXXXXXXXXXXXXXXXXXXXX--------XXRPADKIVPCIPAXXXXXXXXXSDDETEYNQIGGSVXXXXXXXXXXXXXLRGSRKNIRFDLENQNLVQIALTDKLVNKLQIEIKKMGSVKVQFTALIQFEKDGEIKDNFFSNSACVFSDSFLADGVSRLNEKIEKFTYLGSGWRVVKIREIDFILTTYYPVSRLAGHSFIPTPESLVGKKAIVNVKNTDHSCFIYSVLSILKRDIVLKNRERVSSYTTFMDELNYDSITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHPHLALIHRTKVIGGNPINLLLLQDGDNFHYTAIFNLNRLLNCHSSSECNTRIR 1412 I+Y RLYKNYCQSGIGHNSKCHTTME+YYGHRFYGIDFFICPKCDTAQDIEYLEFYKKHSSHLNQFK NK ALFQMINAKN NNN NNT TK SKRPADKIV CIPAKIKKIEIIISDDETEYNQ+ GSVN EINDEPEIE+DLR SRKNIRFDLENQNLVQIALTDKLVNKLQ EIKKMGSVKVQFTALIQFEKDGEIKDNFFSNSA VFSDSFLADGVSRLNEKIEKFTYLGSGWRVVKIREIDFILT+YYPVSRLAGHSFIPTPESLVGKKAIVNVKNTDHSCFIYSVLSILKRDIVLKNRERVSSYTTFMDELNYD ITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHPHL LIHRTKVIGGNPINLLLLQDGDN+HYTAIFNLNR LNCHSSSECNTRIR Sbjct: 665 ISYKKCRLYKNYCQSGIGHNSKCHTTMENYYGHRFYGIDFFICPKCDTAQDIEYLEFYKKHSSHLNQFKSNKNALFQMINAKNVINNNNNNTNNTKITKKINNNTTVTKNNKKSKRPADKIVSCIPAKIKKIEIIISDDETEYNQLEGSVNNEINDEPEIEVDLRSSRKNIRFDLENQNLVQIALTDKLVNKLQNEIKKMGSVKVQFTALIQFEKDGEIKDNFFSNSASVFSDSFLADGVSRLNEKIEKFTYLGSGWRVVKIREIDFILTSYYPVSRLAGHSFIPTPESLVGKKAIVNVKNTDHSCFIYSVLSILKRDIVLKNRERVSSYTTFMDELNYDPITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHPHLVLIHRTKVIGGNPINLLLLQDGDNYHYTAIFNLNRQLNCHSSSECNTRIR 1105
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000066165.1 (SMESG000066165.1) HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0 Identity = 376/379 (99.21%), Postives = 376/379 (99.21%), Query Frame = 3 Query: 192 MESYYGHRFYGIDFFICPKCDTAQDIEYLEFYKKHSSHLNQFKINKKALFQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPADKIVPCIPAXXXXXXXXXSDDETEYNQIGGSVXXXXXXXXXXXXXLRGSRKNIRFDLENQNLVQIALTDKLVNKLQIEIKKMGSVKVQFTALIQFEKDGEIKDNFFSNSACVFSDSFLADGVSRLNEKIEKFTYLGSGWRVVKIREIDFILTTYYPVSRLAGHSFIPTPESLVGKKAIVNVKNTDHSCFIYSVLSILKRDIVLKNRERVSSYTTFMDELNYDSITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHPHLALIHRTKVIGGNPINLLLLQDG 1328 MESYYGHRFYGIDFFICPKCDTAQDIEYLEFYKKHSSHLNQFKINKK LFQMINAKNASNNNTNNTKITKNNNTTVTKK KRPADKIVPCIPAKIKKIEIIISDDETEYNQIGGSVNIEINDEPEIEIDLRGSRKNIRFDLENQNLVQIALTDKLVNKLQIEIKKMGSVKVQFTALIQFEKDGEIKDNFFSNS CVFSDSFLADGVSRLNEKIEKFTYLGSGWRVVKIREIDFILTTYYPVSRLAGHSFIPTPESLVGKKAIVNVKNTDHSCFIYSVLSILKRDIVLKNRERVSSYTTFMDELNYDSITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHPHLALIHRTKVIGGNPINLLLLQDG Sbjct: 1 MESYYGHRFYGIDFFICPKCDTAQDIEYLEFYKKHSSHLNQFKINKKTLFQMINAKNASNNNTNNTKITKNNNTTVTKKLKRPADKIVPCIPAKIKKIEIIISDDETEYNQIGGSVNIEINDEPEIEIDLRGSRKNIRFDLENQNLVQIALTDKLVNKLQIEIKKMGSVKVQFTALIQFEKDGEIKDNFFSNSVCVFSDSFLADGVSRLNEKIEKFTYLGSGWRVVKIREIDFILTTYYPVSRLAGHSFIPTPESLVGKKAIVNVKNTDHSCFIYSVLSILKRDIVLKNRERVSSYTTFMDELNYDSITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHPHLALIHRTKVIGGNPINLLLLQDG 379
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000057427.1 (SMESG000057427.1) HSP 1 Score: 641.728 bits (1654), Expect = 0.000e+0 Identity = 365/466 (78.33%), Postives = 375/466 (80.47%), Query Frame = 3 Query: 111 IITYLSGRLYKNYCQSGIGHNSKCHTTMESYYGHRFYGIDFFICPKCDTAQDIEYLEFYKKHSSHLNQFKINKKALFQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPADKIVPCIPAXXXXXXXXXSDDETEYNQIGGSVXXXXXX--XXXXXXXLRGSRKNIRFDLENQNLVQIALTDKLVNKLQIEIKKMGSVKVQFTALIQFEKDGEIKDNFFSNSACVFSDSFLADGVSRLNEKIEKFTYLGSGWRVVKIREIDFILTTYYPVSRLAGHSFIPTPESLVGKKAIVNVKNTDHSCFIYSVLSILKRDIVLKNRERVSSYTTFMDELNYDSITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHPHLALIHRTKVIGGNPINLLLLQDGDNFHYTAIFNLNRLLNCHSSSECNTRIRVKWCPHCLNGFYYDKTFKAHVNLCTKNKIG 1502 +I+Y RLYKNYCQSGIGHNSK H TMESYYG RFYGIDFFICPKCDTAQDIEYLEFYKKHSSHLNQFKIN NNNT TK K + RPADKIV CIPAKIKKIEIIISDDETEYNQIGGSVN EIN EPEIE+DLRGSRKNIRFDLENQNLVQIAL DKLVNKLQ EIKKMGSVKVQFTALIQFEKDGEIKDNFFSNSACVFSDSFLADGVSRLNEKIEKFTYLG+G HSFIPTPESLVGKKAIVNVKNTD SCF+YSVLSILKRDIVLKNRERVSSYTTFMDELNYD ITDCPMRLC+IPKFERNNSDLNLAINV EYNNTPSKQLNDIDYV HHPHL LIHRTKVIGGNPIN L LLNCHSSSECNTRIRVKWC HCLNGFYY+KTFKAHV+LC KN+IG Sbjct: 886 VISYKKSRLYKNYCQSGIGHNSKFHMTMESYYGQRFYGIDFFICPKCDTAQDIEYLEFYKKHSSHLNQFKINNNNNTNNTKITKNINNNTTVTKNNKKSK--------RPADKIVLCIPAKIKKIEIIISDDETEYNQIGGSVNNEINVNDEPEIEVDLRGSRKNIRFDLENQNLVQIALIDKLVNKLQNEIKKMGSVKVQFTALIQFEKDGEIKDNFFSNSACVFSDSFLADGVSRLNEKIEKFTYLGTG------------------------HSFIPTPESLVGKKAIVNVKNTDPSCFMYSVLSILKRDIVLKNRERVSSYTTFMDELNYDPITDCPMRLCSIPKFERNNSDLNLAINVIEYNNTPSKQLNDIDYVSHHPHLVLIHRTKVIGGNPINHL------------------LLNCHSSSECNTRIRVKWCLHCLNGFYYEKTFKAHVDLCAKNQIG 1301 HSP 2 Score: 53.5286 bits (127), Expect = 3.847e-7 Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 1 Query: 1504 QNLPLNDYSTL-----VIFADLEAILPKDIKHHQIHMPISA 1611 +NL +YS + VI+AD EA+LPKD+KHHQIHMPISA Sbjct: 1311 KNLIFKNYSKMITPPFVIYADFEAVLPKDVKHHQIHMPISA 1351
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000057427.1 (SMESG000057427.1) HSP 1 Score: 641.728 bits (1654), Expect = 0.000e+0 Identity = 365/466 (78.33%), Postives = 375/466 (80.47%), Query Frame = 3 Query: 111 IITYLSGRLYKNYCQSGIGHNSKCHTTMESYYGHRFYGIDFFICPKCDTAQDIEYLEFYKKHSSHLNQFKINKKALFQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPADKIVPCIPAXXXXXXXXXSDDETEYNQIGGSVXXXXXX--XXXXXXXLRGSRKNIRFDLENQNLVQIALTDKLVNKLQIEIKKMGSVKVQFTALIQFEKDGEIKDNFFSNSACVFSDSFLADGVSRLNEKIEKFTYLGSGWRVVKIREIDFILTTYYPVSRLAGHSFIPTPESLVGKKAIVNVKNTDHSCFIYSVLSILKRDIVLKNRERVSSYTTFMDELNYDSITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHPHLALIHRTKVIGGNPINLLLLQDGDNFHYTAIFNLNRLLNCHSSSECNTRIRVKWCPHCLNGFYYDKTFKAHVNLCTKNKIG 1502 +I+Y RLYKNYCQSGIGHNSK H TMESYYG RFYGIDFFICPKCDTAQDIEYLEFYKKHSSHLNQFKIN NNNT TK K + RPADKIV CIPAKIKKIEIIISDDETEYNQIGGSVN EIN EPEIE+DLRGSRKNIRFDLENQNLVQIAL DKLVNKLQ EIKKMGSVKVQFTALIQFEKDGEIKDNFFSNSACVFSDSFLADGVSRLNEKIEKFTYLG+G HSFIPTPESLVGKKAIVNVKNTD SCF+YSVLSILKRDIVLKNRERVSSYTTFMDELNYD ITDCPMRLC+IPKFERNNSDLNLAINV EYNNTPSKQLNDIDYV HHPHL LIHRTKVIGGNPIN L LLNCHSSSECNTRIRVKWC HCLNGFYY+KTFKAHV+LC KN+IG Sbjct: 864 VISYKKSRLYKNYCQSGIGHNSKFHMTMESYYGQRFYGIDFFICPKCDTAQDIEYLEFYKKHSSHLNQFKINNNNNTNNTKITKNINNNTTVTKNNKKSK--------RPADKIVLCIPAKIKKIEIIISDDETEYNQIGGSVNNEINVNDEPEIEVDLRGSRKNIRFDLENQNLVQIALIDKLVNKLQNEIKKMGSVKVQFTALIQFEKDGEIKDNFFSNSACVFSDSFLADGVSRLNEKIEKFTYLGTG------------------------HSFIPTPESLVGKKAIVNVKNTDPSCFMYSVLSILKRDIVLKNRERVSSYTTFMDELNYDPITDCPMRLCSIPKFERNNSDLNLAINVIEYNNTPSKQLNDIDYVSHHPHLVLIHRTKVIGGNPINHL------------------LLNCHSSSECNTRIRVKWCLHCLNGFYYEKTFKAHVDLCAKNQIG 1279 HSP 2 Score: 53.5286 bits (127), Expect = 4.011e-7 Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 1 Query: 1504 QNLPLNDYSTL-----VIFADLEAILPKDIKHHQIHMPISA 1611 +NL +YS + VI+AD EA+LPKD+KHHQIHMPISA Sbjct: 1289 KNLIFKNYSKMITPPFVIYADFEAVLPKDVKHHQIHMPISA 1329 The following BLAST results are available for this feature:
BLAST of C2H2-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of C2H2-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of C2H2-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30027056 ID=SMED30027056|Name=C2H2-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1611bpback to top protein sequence of SMED30027056-orf-1 >SMED30027056-orf-1 ID=SMED30027056-orf-1|Name=SMED30027056-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=444bp MESYYGHRFYGIDFFICPKCDTAQDIEYLEFYKKHSSHLNQFKINKKALFback to top Annotated Terms
The following terms have been associated with this transcript:
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