Aminotran_5 domain-containing protein

Overview
NameAminotran_5 domain-containing protein
Smed IDSMED30027034
Length (bp)1310
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Aminotran_5 domain-containing protein (SMED30027034) t-SNE clustered cells

Violin plots show distribution of expression levels for Aminotran_5 domain-containing protein (SMED30027034) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Aminotran_5 domain-containing protein (SMED30027034) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Aminotran_5 domain-containing protein (SMED30027034) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30027034

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 11

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
gutSMED30027034h1SMcG0004477 Contig1720GPL15192PMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
intestinal phagocyteSMED30027034h1SMcG0004477 Contig1720GPL15192PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
pigment cellSMED30027034h1SMcG0004477 SmedASXL_013037SmedAsxl_ww_GCZZ01PMID:29158443
He et al., 2017		whole organism asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30027034h1SMcG0004477 Contig15233newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027034h1SMcG0004477 Contig15233uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027034h1SMcG0004477 Contig51036newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30027034h1SMcG0004477 Contig51036uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
gutSMED30027034h1SMcG0004477 dd_Smed_v4_6547_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
tail regionSMED30027034h1SMcG0004477 dd_Smed_v6_6547_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
gutSMED30027034h1SMcG0004477 SMED30027034smed_20140614PMID:26457503
Tu et al., 2015		whole organism asexual adult colorimetric in situ hybridization evidence
parenchymaSMED30027034h1SMcG0004477 SMED30027034smed_20140614PMID:26457503
Tu et al., 2015		whole organism asexual adult colorimetric in situ hybridization evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Aminotran_5 domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9LGZ2|LCYD1_ORYSJ (Putative L-cysteine desulfhydrase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0290100 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.237e-37
Identity = 113/413 (27.36%), Postives = 193/413 (46.73%), Query Frame = 2 
Query:   92 NVRSNF-YLDKDILYFNAGTFGVCPKPVLEEKIKFLRKIEANPVNGYVESMFETSLENIKELGKRIGV-EFENLAFLQNVTQGFSSVLTSI-------DIKAGDEILITNFTYGAIVMEVEKYFVEKGGSVKKLILEFPFPSNEYIINKYK---HFAESNSR-IKYAIIDHIPSTLPMVQPVKEIVKALQSLGI-YVIIDGAHAPGQLPNLNVADIGADVYLGNLHKWCFLPRGVAFLAVHPS--CKFQIRPIVVSWLHNSSLFERFLFPGTVDFTNILCIKSAFQFIDSL-GGLEAISNYNSELLKRGIKYLEESWGVAAIAFPEMAPAMRVIPFPPGFDKHSD----KIALLLKRPF--EKPYYKFTLRKFGFILSAYSVNGKL---YFRFCSPIFMEFEYFKLVSEKILK 1252
             +R+ F + +  +   N G+FG CP  +L+ + ++ R   A P + Y  ++      +   +   +   +   ++ + N T   + VL              GD +L+ ++ YGA+   +  Y    G +V ++ L FP  S + II +++     A++  R ++ A+IDHI S   +V PVKE+V   +  G+  V ID AH+ GQ+P ++V DIGAD Y  NLHKW F P  VAFL          Q+   VVS  + + L     + GT D++  L +  +  F++   GG+E I + N E +    K L E+WG      PE+  +M ++  P      SD    ++  +L++ F  E P Y +  R+      A   NG     Y R    ++   E ++ + + + K
Sbjct:   51 QIRAEFEHHEAGVARVNNGSFGCCPSSLLDAQARWQRLFIAQPDDFYFHALQPGLRRSRAAVAGLVNAGDVAEVSLVDNATTAAAIVLQHAAWSFAEGRFSRGDAVLMLHYAYGAVKKSIHAYVARAGATVVEVPLPFPVASADAIIAEFRAALDVAKAGGRKVRLAVIDHITSMPSVVIPVKELVAICREEGVDKVFIDAAHSIGQVP-VDVRDIGADFYTSNLHKWFFCPPAVAFLHTRKDDPIASQLHHPVVSHEYGNGLPMESGWIGTRDYSAQLVVPESIDFVNRFEGGIEGIRSRNHEKVIEMGKMLAEAWGTFLGTPPELCGSMVMVGLPGCLGVESDDDVMRMRTMLRKDFMVEVPIY-YNSRRVEAQEMAKDKNGDAVTGYVRISHQVYNVTEDYEKLRDAVNK 461
[Close]
BLAST of Aminotran_5 domain-containing protein vs. UniProt/SwissProt
Match: sp|Q3E6S9|CNIF3_ARATH (Probable L-cysteine desulfhydrase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CpNIFS3 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.808e-36
Identity = 106/364 (29.12%), Postives = 177/364 (48.63%), Query Frame = 2 
Query:  110 YLDKDILYFNAGTFGVCPKPVL----EEKIKFLRKIEANPVNGYVESMFETSLENIKELGKRIGVEFEN-LAFLQNVTQGFSSVLTSI-------DIKAGDEILITNFTYGAIVMEVEKYFVEKGGSVKKLILEFPFPSNEYIINKYKHFAESNS----RIKYAIIDHIPSTLPMVQPVKEIVKALQSLGI-YVIIDGAHAPGQLPNLNVADIGADVYLGNLHKWCFLPRGVAFLAVHPSCKFQIRPI---VVSWLHNSSLFERFLFPGTVDFTNILCIKSAFQFIDSL-GGLEAISNYNSELLKRGIKYLEESWGVAAIAFPEMAPAMRVIPFPP--GFDKHSD--KIALLLKRPF--EKPYY 1120
            + D D    N G+FG CP  +L    + +++FLR+    P   Y + +     ++   + + I  E ++ ++ + N T   + VL              GD +++ ++ YG++   VE Y    GG V ++ L FP  S + II++++   ES      R++ A+IDH+ S   +V P+KE+VK  +  G+  V +D AH  G + ++++ +IGAD Y  NLHKW F P  VAFL    S    +  +   VVS  + + L     + GT D++  L + S  +F++   GG++ I   N E +    + L +SWG      PEM  +M ++  P   G    SD  K+   L+  F  E P Y
Sbjct:   66 HHDPDFARINNGSFGCCPSSILALQRDWQLRFLRQ----PDRFYFDELKPKISDSRSVIKRLINAEHDDEVSIVDNATTAAAIVLQQTAWAFREGRFDKGDAVVMLHYAYGSVKKSVEAYVTRSGGHVTEVQLPFPVISADEIIDRFRIGLESGKANGRRVRLALIDHVTSMPSVVIPIKELVKICRREGVDQVFVDAAHGIGCV-DVDMKEIGADFYTSNLHKWFFAPPSVAFLYCRKSSNGGVADLHHPVVSNEYGNGLAVESSWVGTRDYSAQLVVPSILEFVNRFEGGIDGIKKRNHESVVEMGQMLVKSWGTQLGCPPEMCASMIMVGLPVCLGVSSESDVLKLRTFLREKFRIEIPIY 424
[Close]
BLAST of Aminotran_5 domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9M1R1|LCYD1_ARATH (L-cysteine desulfhydrase OS=Arabidopsis thaliana OX=3702 GN=LCD PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.243e-32
Identity = 101/342 (29.53%), Postives = 168/342 (49.12%), Query Frame = 2 
Query:  125 ILYFNAGTFGVCPKPVLEEK----IKFLRKIEANPVNGYVESMFETSLENIKELGKRIGVEFENLAFLQNVTQGFSSVLTSI-------DIKAGDEILITNFTYGAIVMEVEKYFVEKGGSVKKLILEFPFPSNEYIINKYKHFAE---SNSR-IKYAIIDHIPSTLPMVQPVKEIVKALQSLGI-YVIIDGAHAPGQLPNLNVADIGADVYLGNLHKWCFLPRGVAFL-AVHPSCKFQIRPIVVSWLHNSSLFERFLFPGTVDFTNILCIKSAFQFIDSL-GGLEAISNYNSELLKRGIKYLEESWGVAAIAFPEMAPAMRVIPFPPGFDKHSDKIALLLK 1096
            +   N G+FG CP  VLE +    +++LR+ +    NG    +   S   I +L      + + ++ + N T   + VL  +         K  D +++ +  + ++   ++ Y    GGS  ++ L FP  SNE II+K++   E   +N R ++ AIIDHI S   ++ PV+E+VK  +  G+  V +D AHA G +  ++V +IGAD Y+ NLHKW F P  +AF        +  +   VVS    + L     + GT D+++ L + S  +F++   GG+E I   N +   R    L ++WG    + PEM   M +I  P      SD+ A+ L+
Sbjct:   44 VARINNGSFGCCPGSVLEAQREWQLRYLRQPDEFYFNGLRRGLL-ASRTVISDLIN--ADDVDEVSLVDNATTAAAIVLQKVGRCFSEGKYKKEDTVVMFHCAFQSVKKSIQAYVSRVGGSTVEVRLPFPVNSNEEIISKFREGLEKGRANGRTVRLAIIDHITSMPCVLMPVRELVKICREEGVEQVFVDAAHAIGSV-KVDVKEIGADYYVSNLHKWFFCPPSIAFFYCKKRGSESDVHHPVVSHEFGNGLPIESAWIGTRDYSSQLVVPSVMEFVNRFEGGMEGIMMKNHDEAVRMGLMLADAWGTNLGSPPEMCVGMVMIGLPSKLCVGSDEDAIKLR 381
[Close]
BLAST of Aminotran_5 domain-containing protein vs. UniProt/SwissProt
Match: sp|Q5JNT6|LCYD2_ORYSJ (Putative L-cysteine desulfhydrase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0290600 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.451e-31
Identity = 102/367 (27.79%), Postives = 164/367 (44.69%), Query Frame = 2 
Query:   95 VRSNF-YLDKDILYFNAGTFGVCPKPVLEEKIKFLRKIEANPVNGYVESMFET-SLENIKELGKRIGVEFENLAFLQNVTQGFSSVLTSI-------DIKAGDEILITNFTYGAIVMEVEKYFVEKGGSVKKLILEFPFPSNEYIINKYKHFAE-----SNSRIKYAIIDHIPSTLPMVQPVKEIVKALQSLGI-YVIIDGAHAPGQLPNLNVADIGADVYLGNLHKWCFLPRGVAFLAVH---PSCKFQIRPIVVSWLHNSSLFERFLFPGTVDFTNILCIKSAFQFIDSL-GGLEAISNYNSELLKRGIKYLEESWGVAAIAFPEMAPAMRVIPFPP--GFDKHSDKIAL--LLKRPF--EKPYY 1120
            VR+ F + D+ +   N GTFG CP  VL  + ++ R   + P   Y   +    +             +   ++ + NVT   + ++  +       D   GD +L+  +TY +I   +  Y    G +V ++ L FP  S + I+ +++            R++ A+IDHI +   ++ PVKE+V   +  G+  V +D AHA GQ+P ++V DIGAD Y  NLHKW F P  VAF+      P       P+V S   N    E     G  D++  L +     F++   GG+E I   N + +      L  +WG      PEM  +M ++  P   G     D + L  +L++ F  E P Y
Sbjct:   45 VRAEFAHHDRAVARLNNGTFGCCPASVLAARARWQRLFLSQPDAFYFHHLQPGLARSRAAVAAAVGAGDASEVSLVDNVTTAAAIIMQHVAWSFAEGDFARGDVVLMFLYTYCSIKNSIHAYVARAGATVVEVPLPFPVSSPDAIVAEFRAALAVARDGGRRRVRLAVIDHITAMPTVLIPVKELVAICREEGVDKVFVDAAHAVGQVP-VDVRDIGADFYASNLHKWFFCPSAVAFIHTRKDDPVSSKLHHPVVSSEYGNGLPMESAWI-GVRDYSAQLVVPDVVDFVNRFDGGVEGIRRRNHDKVVEMGTMLAAAWGTFLGTPPEMCGSMLMVGLPGSLGVGSEDDAVGLRTMLRKQFKVEVPLY 409
[Close]
BLAST of Aminotran_5 domain-containing protein vs. UniProt/SwissProt
Match: sp|P18549|CEFD_STRCL (Isopenicillin N epimerase OS=Streptomyces clavuligerus OX=1901 GN=cefD PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 3.591e-27
Identity = 90/348 (25.86%), Postives = 143/348 (41.09%), Query Frame = 2 
Query:   77 LADRENVRSNFYLDKDILYFNAGTFGVCPKPVLEEKIKFLRKIEANPVNGYVESMFETSLENIKELGKRIGVEFENLAFLQNVTQGFSSVLTSIDIKAGDEILITNFTYGAIVMEVEKYFVEKGGSVKKLIL-EFPFPSNEYIINKYKHFAESNSRIKYAIIDHIPSTLPMVQPVKEIVKALQSLGIYVIIDGAHAPGQLPNLNVADIGADVYLGNLHKWCFLPRGVAFLAVHPSCKFQIRPIVVSWLH----------------NSSLFERFLFPGTVDFTNILCIKSAFQFIDSLGGLEAISNYNSELLKRGIKYLEESWGVAAIA--FPEMAPAMRVIPFPPGFD 1063
            +AD E  R    LD  ++  N G+ G  P+   E    F   + A P++  +  +     +  + L + IG +   LA   NVT   + V +S+ ++A  EIL+++  Y  +    E+     G  ++   L E P    E              R +     H+ ST  ++ P  E+ +  ++ GI  ++DGAHAPG L +L+++ I  D Y G+ HKW   P GV FL + P    ++ P  VSW +                ++    R    GT D    L    +  F   LG   AI     EL     + L +  G   +    PE++  M     PPG D
Sbjct:    3 VADWEEARGRMLLDPTVVNLNTGSGGPLPRSAFERVTGFRAHLAAEPMDFLLREVPALLWQARESLARLIGGDPLRLALATNVTAAVNLVASSLRLEAPGEILLSDDEYTPMRWCWERVARRHGLELRTFRLPELPSDPAEITAAAVAAM---GPRTRLFFFSHVVSTTGLILPAAELCEEARARGITTVVDGAHAPGFL-DLDLSRIPCDFYAGSGHKWLLAPTGVGFLHLAPGRLEELEPTQVSWAYEPPEGSGPPAARDRFGSTPGLRRLECEGTRDICPWLATPESIDFQAELGP-GAIRARRRELTDHARRLLADRPGRTLLTPDSPELSGGMVAYRLPPGTD 345
[Close]
BLAST of Aminotran_5 domain-containing protein vs. TrEMBL
Match: A7RYW0 (Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g204182 PE=4 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.119e-67
Identity = 136/399 (34.09%), Postives = 211/399 (52.88%), Query Frame = 2 
Query:  107 FYLDKDILYFNAGTFGVCPKPVLEEKIKFLRKIEANPVNGYVESMFETSLENIKELGKRIGVEFENLAFLQNVTQGFSSVLTSIDIKAGDEILITNFTYGAIVMEVEKYFVEKGGSVKKLILEFPFP-----SNEYIIN---KYKHFAESNSRIKYAIIDHIPSTLPMVQPVKEIVKALQSLGIYVIIDGAHAPGQLPNLNVADIGADVYLGNLHKWCFLPRGVAFLAVHPSCKFQIRPIVVSWLHNSSLFERFLFPGTVDFTNILCIKSAFQFIDSLGGLEAISNYNSELLKRGIKYLEESWGVAAIAFPE--MAPAMRVIPFPPGFDKHSDKIALLLKRPFEKPYYKFTLRKFGFILSAYSVNGKLYFRFCSPIFMEFEYFKLVSEKILKWLEMLDN 1273
            FYLD +I + N G+FG  PK V+EE++K L + E  P         +  LE +K +   I  +  +L F+ N TQG +++L S+D+K GD +L+TN TYGA+ M  ++    K  ++  L L F        S+ Y+++   +Y+   + N  IK AIIDHI S+  ++ PVK+++KA    G+  ++DGAHAPGQ+ +L +  + AD Y+GNLHKW F PRG AFL VH   + QI P+ VSW H+     +FL  GT D +NI  +++A Q+   LGGLE I ++N  L       L   W    +  P+   AP M  I  P         IA    RP E    K    ++   ++   +   L+ R    ++   + +K ++E +L+  + + N
Sbjct:   56 FYLDSNITHVNNGSFGAVPKRVMEERLKHLYEEEGCPDGCIFYKSTDRWLEAVKSVANFINCDHRDLVFVNNATQGINAILRSLDLKEGDSVLVTNQTYGAVSMTTQEVCHSKKANLVVLNLTFRTSDLGGHSDYYVVDIVGQYRKVLQENPNIKIAIIDHITSSSALLLPVKKLLKACHDHGVMALVDGAHAPGQV-SLEIDSLDADFYVGNLHKWMFAPRGTAFLWVHKKYQSQINPLAVSWNHSLGFQMKFLLQGTEDQSNIFAVEAALQYHYHLGGLENIQSHNMALCHWASNMLASKWQTETLPIPDNMRAPYMACIRLPQEIG-----IAYGATRPGESKARKDLFERYSICVAVTCIQSSLWCRISCHVYNCEDDYKKLAEGVLRLKQAIIN 448
[Close]
BLAST of Aminotran_5 domain-containing protein vs. TrEMBL
Match: A0A3M6TXS7 (Aminotran_5 domain-containing protein OS=Pocillopora damicornis OX=46731 GN=pdam_00007826 PE=4 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.456e-63
Identity = 135/404 (33.42%), Postives = 209/404 (51.73%), Query Frame = 2 
Query:   89 ENVRSN-FYLDKDILYFNAGTFGVCPKPVLEEKIKFLRKIEANPVNGY---VESMFETSLENIKELGKRIGVEFENLAFLQNVTQGFSSVLTSIDIKAGDEILITNFTYGAIVMEVEKYFVEKGGSVKKLILEFPFPSNEY----------IINKYKHFAESNSRIKYAIIDHIPSTLPMVQPVKEIVKALQSLGIYVIIDGAHAPGQLPNLNVADIGADVYLGNLHKWCFLPRGVAFLAVHPSCKFQIRPIVVSWLHNSSLFERFLFPGTVDFTNILCIKSAFQFIDSLGGLEAISNYNSELLKRGIKYLEESWGVAAIAFPE--MAPAMRVIPFPPGFDKHSDKIALLLKRPFEKPYYKFTLRKFGFILSAYSVNGKLYFRFCSPIFMEFEYFKLVSEKILK 1252
            +N++ N F LD+ I+  N G++G  PK V E + K+  ++E  P   +   V++++ +SLE +    K +G   ++L F+ N T G ++VL S++ + GD ILITN TYGA+ M  ++   EK    K L+L   FP+++           I+  Y+   + N+ +K  IID I S   +  P+K++ +        V+IDGAHAPGQ+P L++  IGAD ++GNLHKW F PRG A L V P     I P VVSW H+ +L +RF   GT+D T+     +A QF   +GG+ AI+ YNS+L       L E+W    +  PE   AP M VI  P               +     Y+K+ +     I    S+   L+ R    ++   E +  + E +L+
Sbjct:   55 KNIKKNLFLLDESIVVTNNGSYGTIPKKVKETQWKYQEEMERCPDIWFRYKVKNLWNSSLETV---AKFVGANVKDLVFIANATSGINAVLRSVNFQEGDGILITNQTYGAVQMTAQEICQEK--KAKLLVLNVTFPTSDMTGSIKYQVTEIVEHYEKVLQENTNVKLVIIDAITSISALKLPIKKLSEVCHKHNALVLIDGAHAPGQIP-LDLERIGADFFVGNLHKWLFAPRGCAILWVSPKFHDVIIPQVVSWFHDKNLQDRFFQQGTIDHTSYTSAAAAVQFYREIGGMGAITKYNSQLATWASTTLAETWDTEVLPIPESMRAPFMAVIRLPGELSAAYGATQKGADKMMSDVYHKYNV-----IACFISIQASLWCRVSVQVYNVKEDYMQLGEVVLQ 447
[Close]
BLAST of Aminotran_5 domain-containing protein vs. TrEMBL
Match: A0A267G422 (Aminotran_5 domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig016158g3 PE=4 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 5.832e-60
Identity = 114/326 (34.97%), Postives = 178/326 (54.60%), Query Frame = 2 
Query:  125 ILYFNAGTFGVCPKPVLEEKIKFLRKIEANPVNGYVESMFETSLENIKELGKRIGVEFENLAFLQNVTQGFSSVLTSIDIKAGDEILITNFTYGAIVMEV-------------EKYFVEKGGSVKKLILEFPFPSNEYIINKYKHFAESNSRIKYAIIDHIPSTLPMVQPVKEIVKALQSLGIYVIIDGAHAPGQLPNLNVADIGADVYLGNLHKWCFLPRGVAFLAVHPSCKFQIRPIVVSWLHNSSLFE-RFLFPGTVDFTNILCIKSAFQFI-DSLGGLEAISNYNSELLKRGIKYLEESWGVAAIAFPE--MAPAMRVIPFP 1051
            ++  N+G+FG+ PK V+++KI+ ++  E+   N   +S+   + ++I+ + K + V  +    + NVT G S++L +I ++ GD IL+ ++TYG++ M               E         V +L +E P  S E II + +   E  S I+ AI+DHI S+   + PV+++ K  +S G+ V+IDGAHA GQ+P L++  IGAD Y+GNLHKWCF P+  A L   P     +RP VVSWL    L   RF F GT D +++  +  A +F+  S GGL  I  Y S L  +  ++L  +W    +  P    AP MR+I  P
Sbjct:   26 VIMLNSGSFGLSPKSVIDKKIECIQDFESYGDNYVRQSLLRQTEDSIEAVAKLLDVRPDQCVIVDNVTTGISNLLDTI-VRPGDTILVNSWTYGSVKMAASLSSEVMTNRNSDETDVKPSSVQVVELDIELPIKSEEDIIEQVRKTLEQRSDIRIAILDHITSSTACLMPVQQLTKLCRSRGVLVVIDGAHAIGQVPELDIESIGADFYVGNLHKWCFAPKSAALLWARPDRIDSLRPSVVSWLVRDHLASMRFAFLGTRDTSSVCAVSEAVRFVKQSCGGLARIQAYCSRLADKASQHLATAWNSHKLPIPANMEAPFMRLIALP 350
[Close]
BLAST of Aminotran_5 domain-containing protein vs. TrEMBL
Match: A0A553N6Y5 (Aminotran_5 domain-containing protein OS=Tigriopus californicus OX=6832 GN=TCAL_08278 PE=4 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.814e-60
Identity = 127/389 (32.65%), Postives = 202/389 (51.93%), Query Frame = 2 
Query:   89 ENVRSNFYLD-KDILYFNAGTFGVCPKPVLEEKIKFLRKIEANPVNGYVESMFETSLENIKELGKRIGVEFENLAFLQNVTQGFSSVLTSIDIKAGDEILITNFTYGAIVMEVEKYFVEKGGSVKKLILEFPFPSNEYIINKYKHFAESNSRIKYAIIDHIPSTLPMVQPVKEIVKALQSLGIYVIIDGAHAPGQLP--NLNVADIGADVYLGNLHKWCFLPRGVAFLAVHPSCKFQIRPIVVSWLHNSSLFERFLFPGTVDFTNILCIKSAFQFIDSLGGLEAISNYNSELLKRGIKYLEESWGVAAIAFPEM--APAMRVIPFP--PGFDKHSDKIALLLKRPFEKPYYKFTLRKFGFILSAYSVNGKLYFRFCSPIFMEFE-YFKL 1231
            E +++ F L  ++I++ N G++GVCP+ V++ K   + ++EA P   + +     S E  K+L   +G + ++L F+ N T G ++VL S+  +  +EIL  N TY A+   V+    +    +  L   FP  S E I++ Y    + N  I+ A++DHI S   +  P+K I + L   G+ V++DGAHAPGQ+P    ++AD G D Y GNLHKW F PRG  FL VHP     I+P+V S ++  S  E F   GT D++N L  ++A +F + LGG E I  Y   LLK     + E+ G   +  P    +P ++V+  P  P   ++  + A  L R          + ++  ++      G+L+ R    I+   E YFKL
Sbjct:   35 EQMKAEFGLAFQEIVFCNQGSYGVCPRRVVQYKHDLVDEMEAYPDYWFRKVFAGKSNEARKQLANFLGSDPDHLVFVPNATVGVNTVLKSLQFQPEEEILHNNHTYMAVKNTVDATVTKYDADILSLDFTFPIESEEEIVDLYSEVCQRNRSIRLAVVDHISSPSGIQFPIKRIAEKLHKYGVLVMVDGAHAPGQVPLDMKDLADAGVDFYTGNLHKWLFTPRGCGFLWVHPRHHHMIQPLVTSNIYKKSFVEGFQLAGTDDYSNYLASEAALEFFNGLGGFEGIHGYVVPLLKWARDMIGEALGTKKLPIPATMESPYLKVVGLPNLPDGRENCFETAEQLIREI--------MDEYNVVVQVACFQGQLWTRISGSIYSTKEDYFKL 415
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BLAST of Aminotran_5 domain-containing protein vs. TrEMBL
Match: A0A1I8J336 (Aminotran_5 domain-containing protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.690e-59
Identity = 114/332 (34.34%), Postives = 178/332 (53.61%), Query Frame = 2 
Query:  125 ILYFNAGTFGVCPKPVLEEKIKFLRKIEANPVNGYVESMFETSLENIKELGKRIGVEFENLAFLQNVTQGFSSVLTSIDIKAGDEILITNFTYGAIVMEV-------------EKYFVEKGGSVKKLILEFPFPSNEYIINKYKHFAESNSRIKYAIIDHIPSTLPMVQPVKEIVKALQSLGIYVIIDGAHAPGQLPNLNVADIGADVYLGNLHKWCFLPRGVAFLAVHPSCKFQIRPIVVSWLHNSSLFE-RFLFPGTVDFTNILCIKSAFQFI-DSLGGLEAISNYNSELLKRGIKYLEESWGVAAIAFPE--MAPAMRVIPFPPGFDKH 1069
            ++  N+G+FG+ PK V+++KI+ ++  E+   N   +S+   + ++I+ + K + V  +    + NVT G S++L +I ++ GD IL+ ++TYG++ M               E         V +L +E P  S E II + +   E  S I+ AI+DHI S+   + PV+++ K  +S G+ V+IDGAHA GQ+P L++  IGAD Y+GNLHKWCF P+  A L         +RP VVSWL    L   RF F GT D +++  +  A +F+  S GGL  I  Y S L  +  ++L  +W    +  P    AP MR+I  P     H
Sbjct:   26 VIMLNSGSFGLSPKSVIDKKIECIQDFESYGDNYVRQSLLRQTEDSIEAVAKLLDVRPDQCVIVDNVTTGISNLLDTI-VRPGDTILVNSWTYGSVKMAASLSSEVMTNRNSDETDVKPSSVQVVELDIELPIKSEEDIIEQVRKTLEQRSDIRIAILDHITSSTACLMPVQQLTKLCRSRGVLVVIDGAHAIGQVPELDIESIGADFYVGNLHKWCFAPKSAALLWARADRIDSLRPSVVSWLVRDHLASMRFAFLGTRDTSSVCAVSEAVRFVKQSCGGLARIQAYCSRLADKASQHLATAWNSHKLPIPANMEAPFMRLIALPKHLQCH 356
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BLAST of Aminotran_5 domain-containing protein vs. Ensembl Nematostella
Match: EDO43426 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RYW0])

HSP 1 Score: 231.106 bits (588), Expect = 7.080e-71
Identity = 136/399 (34.09%), Postives = 211/399 (52.88%), Query Frame = 2 
Query:  107 FYLDKDILYFNAGTFGVCPKPVLEEKIKFLRKIEANPVNGYVESMFETSLENIKELGKRIGVEFENLAFLQNVTQGFSSVLTSIDIKAGDEILITNFTYGAIVMEVEKYFVEKGGSVKKLILEFPFP-----SNEYIIN---KYKHFAESNSRIKYAIIDHIPSTLPMVQPVKEIVKALQSLGIYVIIDGAHAPGQLPNLNVADIGADVYLGNLHKWCFLPRGVAFLAVHPSCKFQIRPIVVSWLHNSSLFERFLFPGTVDFTNILCIKSAFQFIDSLGGLEAISNYNSELLKRGIKYLEESWGVAAIAFPE--MAPAMRVIPFPPGFDKHSDKIALLLKRPFEKPYYKFTLRKFGFILSAYSVNGKLYFRFCSPIFMEFEYFKLVSEKILKWLEMLDN 1273
            FYLD +I + N G+FG  PK V+EE++K L + E  P         +  LE +K +   I  +  +L F+ N TQG +++L S+D+K GD +L+TN TYGA+ M  ++    K  ++  L L F        S+ Y+++   +Y+   + N  IK AIIDHI S+  ++ PVK+++KA    G+  ++DGAHAPGQ+ +L +  + AD Y+GNLHKW F PRG AFL VH   + QI P+ VSW H+     +FL  GT D +NI  +++A Q+   LGGLE I ++N  L       L   W    +  P+   AP M  I  P         IA    RP E    K    ++   ++   +   L+ R    ++   + +K ++E +L+  + + N
Sbjct:   56 FYLDSNITHVNNGSFGAVPKRVMEERLKHLYEEEGCPDGCIFYKSTDRWLEAVKSVANFINCDHRDLVFVNNATQGINAILRSLDLKEGDSVLVTNQTYGAVSMTTQEVCHSKKANLVVLNLTFRTSDLGGHSDYYVVDIVGQYRKVLQENPNIKIAIIDHITSSSALLLPVKKLLKACHDHGVMALVDGAHAPGQV-SLEIDSLDADFYVGNLHKWMFAPRGTAFLWVHKKYQSQINPLAVSWNHSLGFQMKFLLQGTEDQSNIFAVEAALQYHYHLGGLENIQSHNMALCHWASNMLASKWQTETLPIPDNMRAPYMACIRLPQEIG-----IAYGATRPGESKARKDLFERYSICVAVTCIQSSLWCRISCHVYNCEDDYKKLAEGVLRLKQAIIN 448
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BLAST of Aminotran_5 domain-containing protein vs. Ensembl Nematostella
Match: EDO41055 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S5A5])

HSP 1 Score: 138.658 bits (348), Expect = 2.077e-36
Identity = 100/405 (24.69%), Postives = 186/405 (45.93%), Query Frame = 2 
Query:   98 RSNFYLD-KDILYFNAGTFGVCPKPVLEEKIKFLRK----IEANPVNGYVESMFETSLENIKELGKRIGVEFENLAFLQNVTQGFSSVLTSIDIKAGDEILITNFTYGAIVMEVEKYFVEKGGSVKKLILEFPFPSNEYIINKYKHFAESNSR--IKYAIIDHIPSTLPMVQPVKEIVKALQSLGIYVIIDGAHAPGQLPNLNVADIGADVYLGNLHKWCFLPRGVAFLAVHPSCKFQIRPIVVSWLHNSSLFERFLFPGTVDFTNILCIKSAFQFIDSLGGLEAISNYNSELLKRGIKYLEESWGVAAIAFPEMAPAMRVIPFPP-----GFDKHSDKIALLLKRPFEKPYYKFTLRKFGFILSAYSVNGKLYFRFCSPIFMEFEYFKLVSEKILKWLEMLDND 1276
            + +F +D K+  + N G FG     VL+E +   R     IE  P+      +    +   + L   +  +  +L  + N T+G ++V+ S+ +  GD++   N  Y A+   +     E G  +++  +  PFPS E   +      E+  +   K A+  HIPS +P++ P+  ++       + V++DGAHA G LP L +A++GAD Y+ N HKW   P+G A L V    K  +R + VS          FLF G  D++  L + +   F +++   + I N+N+ L  +    L + W    +    M   M ++  P           +D++     +P  +   +    +    +   +VNGKLY R  + ++ E   +KL+++ +L+ +E+  ++
Sbjct:   66 KKHFLIDFKNWTFLNHGAFG----GVLKESLDIARDWQIYIEKQPLRFVDRELLTHMVYITRRLAGFLCCDPRDLVLVPNATEGINTVIRSLKLCKGDKVFYLNTCYYAVKKLLRHLSAEDGVEIQEATI--PFPSYE---DDILSLVETTLQPGTKLAVFSHIPSVIPIIMPISRLIGICHKRDVPVLVDGAHALGALP-LRIAELGADYYVANAHKWLCAPKGCAALYVADKHKGSVRCLTVSGGFGRGFTTEFLFRGLRDYSPYLALHTVLDFWETVSP-DRIYNHNTSLAHKAATLLAKCWDTDTLFPLYMFGPMVLVRLPDLLWQCQVANGNDEV----DKPKAEAVQERLHCESALEVPVKAVNGKLYVRISAHVYNELNEYKLLADAVLRLVELCKDN 455
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BLAST of Aminotran_5 domain-containing protein vs. Planmine SMEST
Match: SMESG000033958.1 (SMESG000033958.1)

HSP 1 Score: 813.913 bits (2101), Expect = 0.000e+0
Identity = 398/404 (98.51%), Postives = 401/404 (99.26%), Query Frame = 2 
Query:   74 MLADRENVRSNFYLDKDILYFNAGTFGVCPKPVLEEKIKFLRKIEANPVNGYVESMFETSLENIKELGKRIGVEFENLAFLQNVTQGFSSVLTSIDIKAGDEILITNFTYGAIVMEVEKYFVEKGGSVKKLILEFPFPSNEYIINKYKHFAESNSRIKYAIIDHIPSTLPMVQPVKEIVKALQSLGIYVIIDGAHAPGQLPNLNVADIGADVYLGNLHKWCFLPRGVAFLAVHPSCKFQIRPIVVSWLHNSSLFERFLFPGTVDFTNILCIKSAFQFIDSLGGLEAISNYNSELLKRGIKYLEESWGVAAIAFPEMAPAMRVIPFPPGFDKHSDKIALLLKRPFEKPYYKFTLRKFGFILSAYSVNGKLYFRFCSPIFMEFEYFKLVSEKILKWLEMLDNDKDL 1285
            MLADRENVRSNFY+DKDILYFNAGTFGVCPKPVLEEKIKFLRKIEANPVNGYVESMFETSLENIKELGKRIGVEFENLAFLQNVTQGFSSVLTSIDIKAGDEILITNFTYGAIVMEVEKYFVEKGGSVK LILEFPFPSNEYIINKYK FAESNSRIKYAIIDHIPSTLPMVQPVKEIVKALQSLGIYVIIDGAHAPGQLPNLNVADIGAD+YLGNLHKWCFLPRGVAFLAVHPSCKFQIRPIVVSWLHNSSLFERFLFPGTVDFTNILCIKSAFQFIDSLGGLEAISNYNSELLKRGIKYLEESWGVAAIAFPEMAPAMR+IPFPPGFDKHSDKIALLLKRPFEKPYYKFTLRKFGFILSAYSVNGKLYFRFCS IFMEFEYFKLVSEKILKWLEMLDNDKDL
Sbjct:    1 MLADRENVRSNFYIDKDILYFNAGTFGVCPKPVLEEKIKFLRKIEANPVNGYVESMFETSLENIKELGKRIGVEFENLAFLQNVTQGFSSVLTSIDIKAGDEILITNFTYGAIVMEVEKYFVEKGGSVKTLILEFPFPSNEYIINKYKDFAESNSRIKYAIIDHIPSTLPMVQPVKEIVKALQSLGIYVIIDGAHAPGQLPNLNVADIGADIYLGNLHKWCFLPRGVAFLAVHPSCKFQIRPIVVSWLHNSSLFERFLFPGTVDFTNILCIKSAFQFIDSLGGLEAISNYNSELLKRGIKYLEESWGVAAIAFPEMAPAMRIIPFPPGFDKHSDKIALLLKRPFEKPYYKFTLRKFGFILSAYSVNGKLYFRFCSQIFMEFEYFKLVSEKILKWLEMLDNDKDL 404
The following BLAST results are available for this feature:
BLAST of Aminotran_5 domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Aminotran_5 domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Aminotran_5 domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Aminotran_5 domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Aminotran_5 domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Aminotran_5 domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Aminotran_5 domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9LGZ2|LCYD1_ORYSJ6.237e-3727.36Putative L-cysteine desulfhydrase 1 OS=Oryza sativ... [more]
sp|Q3E6S9|CNIF3_ARATH9.808e-3629.12Probable L-cysteine desulfhydrase, chloroplastic O... [more]
sp|Q9M1R1|LCYD1_ARATH1.243e-3229.53L-cysteine desulfhydrase OS=Arabidopsis thaliana O... [more]
sp|Q5JNT6|LCYD2_ORYSJ2.451e-3127.79Putative L-cysteine desulfhydrase 2 OS=Oryza sativ... [more]
sp|P18549|CEFD_STRCL3.591e-2725.86Isopenicillin N epimerase OS=Streptomyces clavulig... [more]
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BLAST of Aminotran_5 domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A7RYW05.119e-6734.09Predicted protein OS=Nematostella vectensis OX=453... [more]
A0A3M6TXS74.456e-6333.42Aminotran_5 domain-containing protein OS=Pocillopo... [more]
A0A267G4225.832e-6034.97Aminotran_5 domain-containing protein OS=Macrostom... [more]
A0A553N6Y58.814e-6032.65Aminotran_5 domain-containing protein OS=Tigriopus... [more]
A0A1I8J3361.690e-5934.34Aminotran_5 domain-containing protein OS=Macrostom... [more]
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BLAST of Aminotran_5 domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Aminotran_5 domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Aminotran_5 domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Aminotran_5 domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO434267.080e-7134.09Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO410552.077e-3624.69Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Aminotran_5 domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Aminotran_5 domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000033958.10.000e+098.51SMESG000033958.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30027034 ID=SMED30027034|Name=Aminotran_5 domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1310bp
AACTTTCACCTTTGAAATTTGCACAATTTTTGATGGATAAAAACAATTTT
ACCAATCAATATCCTTACAAAATATGTTGGCCGACAGAGAAAATGTACGA
AGCAACTTTTACCTAGATAAAGATATATTATATTTTAATGCAGGAACATT
TGGAGTGTGTCCAAAGCCGGTTTTGGAAGAAAAGATCAAGTTTCTTCGGA
AAATTGAAGCTAATCCAGTTAATGGTTATGTTGAATCCATGTTTGAAACC
AGTCTTGAAAATATCAAAGAATTGGGAAAAAGAATCGGAGTTGAATTTGA
AAACTTAGCCTTCTTGCAAAATGTTACACAAGGATTCAGTTCTGTATTAA
CTAGCATTGATATAAAAGCTGGTGATGAAATTCTAATAACAAATTTTACT
TATGGAGCAATAGTTATGGAAGTTGAAAAGTATTTTGTAGAAAAAGGAGG
ATCTGTAAAAAAGTTGATTTTGGAGTTTCCATTTCCATCAAATGAGTATA
TTATTAACAAGTACAAACATTTCGCCGAAAGTAACTCTCGTATAAAATAT
GCCATTATCGATCATATTCCTTCGACTCTCCCAATGGTGCAGCCTGTTAA
GGAAATAGTTAAAGCATTACAAAGTCTAGGAATTTATGTCATAATAGATG
GAGCTCATGCACCTGGGCAACTTCCTAATTTGAATGTAGCAGATATTGGG
GCAGACGTTTACTTAGGCAACCTTCATAAATGGTGCTTTCTGCCCAGAGG
AGTAGCATTTTTAGCAGTTCATCCCAGTTGCAAATTCCAGATTCGGCCAA
TTGTGGTTTCTTGGTTACATAATTCCTCATTGTTTGAGCGATTCCTGTTT
CCTGGTACTGTAGATTTTACAAATATCCTATGTATAAAAAGTGCCTTTCA
ATTTATTGATAGTCTAGGAGGACTTGAAGCTATTTCAAATTACAATTCGG
AATTATTGAAAAGAGGAATTAAATATCTGGAAGAAAGTTGGGGAGTTGCT
GCTATAGCGTTTCCTGAAATGGCACCAGCAATGAGAGTTATTCCATTTCC
ACCAGGATTTGATAAGCATTCCGATAAAATAGCTTTGCTTTTAAAAAGAC
CCTTTGAAAAACCATATTATAAATTCACATTAAGAAAATTTGGATTTATC
TTGAGTGCATATTCGGTAAACGGAAAACTTTATTTTCGATTTTGTAGCCC
AATTTTCATGGAGTTTGAATATTTTAAATTGGTCTCCGAAAAAATTTTAA
AATGGTTAGAAATGTTGGACAATGACAAAGATTTGTGATTTTCATATATT
GGAAAATAAA
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protein sequence of SMED30027034-orf-1

>SMED30027034-orf-1 ID=SMED30027034-orf-1|Name=SMED30027034-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=405bp
MLADRENVRSNFYLDKDILYFNAGTFGVCPKPVLEEKIKFLRKIEANPVN
GYVESMFETSLENIKELGKRIGVEFENLAFLQNVTQGFSSVLTSIDIKAG
DEILITNFTYGAIVMEVEKYFVEKGGSVKKLILEFPFPSNEYIINKYKHF
AESNSRIKYAIIDHIPSTLPMVQPVKEIVKALQSLGIYVIIDGAHAPGQL
PNLNVADIGADVYLGNLHKWCFLPRGVAFLAVHPSCKFQIRPIVVSWLHN
SSLFERFLFPGTVDFTNILCIKSAFQFIDSLGGLEAISNYNSELLKRGIK
YLEESWGVAAIAFPEMAPAMRVIPFPPGFDKHSDKIALLLKRPFEKPYYK
FTLRKFGFILSAYSVNGKLYFRFCSPIFMEFEYFKLVSEKILKWLEMLDN
DKDL*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000070intestinal phagocyte
PLANA:0000421tail
PLANA:0002075pigment cell
PLANA:0002142parenchyma
Vocabulary: INTERPRO
TermDefinition
IPR015422PyrdxlP-dep_Trfase_dom1
IPR000192Aminotrans_V_dom
IPR015421PyrdxlP-dep_Trfase_major
IPR015424PyrdxlP-dep_Trfase
Vocabulary: molecular function
TermDefinition
GO:0003824catalytic activity
GO:0008483transaminase activity
GO:0016740transferase activity
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015421Pyridoxal phosphate-dependent transferase, major domainGENE3DG3DSA:3.40.640.10coord: 30..284
e-value: 4.3E-42
score: 146.4
IPR015422Pyridoxal phosphate-dependent transferase domain 1GENE3DG3DSA:3.90.1150.10coord: 17..326
e-value: 4.3E-42
score: 146.4
IPR000192Aminotransferase class V domainPFAMPF00266Aminotran_5coord: 20..340
e-value: 3.1E-20
score: 72.4
NoneNo IPR availablePANTHERPTHR43092FAMILY NOT NAMEDcoord: 6..393
NoneNo IPR availablePANTHERPTHR43092:SF4coord: 6..393
IPR015424Pyridoxal phosphate-dependent transferaseSUPERFAMILYSSF53383PLP-dependent transferasescoord: 8..342