ATP-dependent rRNA helicase RRP3
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Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30026996 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Homology
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Human
Match: DDX47 (DEAD-box helicase 47 [Source:HGNC Symbol;Acc:HGNC:18682]) HSP 1 Score: 285.804 bits (730), Expect = 2.711e-91 Identity = 155/354 (43.79%), Postives = 225/354 (63.56%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIY 1112
F+ LGV L E +++GW +PT+IQ + IPL L+ D++ LAETGSGKTGAFA+PI+ L + P+ FAL+LTPT ELA QI +F LG G++ IVGG Q+ L + K H+++ TPGR++ H+ N K N + L++LV+DEADR+L+ DF ++ I++ +P+ R+T LFSATMT K++KL+ +KNP++ VS K+ QQ +F + +LV+ L L S ++F T +T+ LL L + L M++ +R +L+ F + ++L+ATDVASRGLDIP+V +V+NF +P SKDY+HRVGRTARAGRSG AI+ T Y
Sbjct: 26 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQS-LALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKY-QTVEKLQQYYIFIPSKFKDTYLVYILNELAGNS-------FMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQY 370
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Human
Match: DDX47 (DEAD-box helicase 47 [Source:HGNC Symbol;Acc:HGNC:18682]) HSP 1 Score: 261.151 bits (666), Expect = 2.166e-82 Identity = 148/354 (41.81%), Postives = 209/354 (59.04%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIY 1112
F+ LGV L E +++GW +PT+IQ + IPL L+ D++ LAETGSGKTGAFA+PI+ L + P+ FAL+LTPT ELA QI +F LG G++ IVGG Q+ L + K H+++ TPGR++ H+ N K N + L++LV+DEADR+L+ DF ++ I++ +P+ R+T LFSATMT K++KL+ +KNP++ VS K+QT V KLQ +F +K +K R +L+ F + ++L+ATDVASRGLDIP+V +V+NF +P SKDY+HRVGRTARAGRSG AI+ T Y
Sbjct: 26 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQS-LALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQT---------------------VEKLQ------------QYYIFIPSKFKSK------------------------RLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQY 321
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Human
Match: DDX49 (DEAD-box helicase 49 [Source:HGNC Symbol;Acc:HGNC:18684]) HSP 1 Score: 256.529 bits (654), Expect = 1.215e-79 Identity = 157/393 (39.95%), Postives = 219/393 (55.73%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGG-EFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSD---DFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPL--RAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSIDVPRNEFEEIQDNV 1211
F +LG+ L E+ ++G +PT +Q IP +L+ D + A+TGSGKT AF +PI+QKL + P F L+LTPT ELA QI +F LG+ GLK IVGG + V +L S K HVV+ TPGR+ H+ + + K +RFLV+DEADR+L DF DL AI+ ++P RQT LFSAT+T+ L +L+ + P A+ + + D ++ L+ + Q DE++ ++I+FT T K +IL +L + L S M + ER AL F S +L+ATDVASRGLDIP V +VIN P K Y+HRVGRTARAGR G AI+L T Y + IE+ + ++ V E +I V
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALEL--SRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQ------DEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKKKLEEFSVEEAEVLQILTQV 388
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Human
Match: EIF4A3 (eukaryotic translation initiation factor 4A3 [Source:HGNC Symbol;Acc:HGNC:18683]) HSP 1 Score: 210.69 bits (535), Expect = 7.959e-63 Identity = 116/349 (33.24%), Postives = 199/349 (57.02%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISL 1100
F+ +G+ +L I G+ +P+ IQ++ I ++K DV+A +++G+GKT F+I ++Q L + + ALIL PT ELAVQI+ + LG+ ++ +GG V + + L + HVV GTPGRV I ++ L + ++ LVLDEAD ML+ F + + LP Q L SAT+ +++ ++ + + +P+R V R T++ + Q + ++ WK +L + D + ++F TK+ L + E + +V+ + DM + ER++ + F SG VL++TDV +RGLD+P V L+IN+ +P + + Y+HR+GR+ R GR G+AI+
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ-HVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE-------WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINF 380
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Human
Match: EIF4A3 (eukaryotic translation initiation factor 4A3 [Source:HGNC Symbol;Acc:HGNC:18683]) HSP 1 Score: 210.69 bits (535), Expect = 7.959e-63 Identity = 116/349 (33.24%), Postives = 199/349 (57.02%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISL 1100
F+ +G+ +L I G+ +P+ IQ++ I ++K DV+A +++G+GKT F+I ++Q L + + ALIL PT ELAVQI+ + LG+ ++ +GG V + + L + HVV GTPGRV I ++ L + ++ LVLDEAD ML+ F + + LP Q L SAT+ +++ ++ + + +P+R V R T++ + Q + ++ WK +L + D + ++F TK+ L + E + +V+ + DM + ER++ + F SG VL++TDV +RGLD+P V L+IN+ +P + + Y+HR+GR+ R GR G+AI+
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ-HVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE-------WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINF 380
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Celegans
Match: T26G10.1 (Putative ATP-dependent RNA helicase T26G10.1 [Source:UniProtKB/Swiss-Prot;Acc:P34580]) HSP 1 Score: 291.967 bits (746), Expect = 1.256e-93 Identity = 162/379 (42.74%), Postives = 234/379 (61.74%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSIDVPRNE 1187
F +LGV L + +++GW +P++IQ+ +P L+ DV+ LAETGSGKTGAFAIP++Q L D P+ F L+LTPT ELA QI +F LG GL IVGG + Q L + + H++V TPGR++ H+ N K N K L+FL++DEADR+L+ DF +L I++ +P+ R+T LFSATMT K+ KLE +++P R VS ++ +Q +F + + +LV+ LLN E+ ++ IVF T T + +L +L + L M++ +R +L+ F S +LV TDVA+RGLDIP+V +VIN+ +P SKDY+HRVGRTARAGRSG+AI++ T Y IE +LG + NE
Sbjct: 46 FAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMAL-ARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLFSATMTKKVSKLERASLRDPARVSVSSRY-KTVDNLKQHYIFVPNKYKETYLVY----LLN---EHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEANLGKKLDEYKCVENE 415
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Celegans
Match: H20J04.4 (pep chromosome:WBcel235:II:4329023:4332507:1 gene:WBGene00019219.1 transcript:H20J04.4a.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:H20J04.4) HSP 1 Score: 246.514 bits (628), Expect = 4.414e-76 Identity = 150/387 (38.76%), Postives = 221/387 (57.11%), Query Frame = 3
Query: 51 KFEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRV--LLHINKKLLN--FKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDE-RVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSIDVPRNEFEE 1196
KF +LGV ++++++ + T +Q IP +L+ +D++ A TG+GKT AFAIPI+QKL P +ALILTPT ELA QI +F LG+ LK IVGG + Q + L S + HVVV TPGR+ L+ + + FK ++F VLDEADRML + + L I ES+ + RQT L SAT+TN + L V + P E K ++ C + +LV+ ++ N S++N S+V++F +T ++ + L + L V L S + + +R AL +F S + V++ TDVASRGLDIP+V LV+N VP+ K Y+HRVGR+ARAGR G A+S T Y L +E+ +G + + V F +
Sbjct: 90 KFSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQAREL-SERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESISEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQKYVVCPVAVKDAYLVYVVK---NYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLDELKVKIQTFRK 472
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Celegans
Match: H20J04.4 (pep chromosome:WBcel235:II:4329023:4334091:1 gene:WBGene00019219.1 transcript:H20J04.4b.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:H20J04.4) HSP 1 Score: 245.743 bits (626), Expect = 5.091e-75 Identity = 149/380 (39.21%), Postives = 219/380 (57.63%), Query Frame = 3
Query: 51 KFEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRV--LLHINKKLLN--FKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDE-RVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSIDV 1175
KF +LGV ++++++ + T +Q IP +L+ +D++ A TG+GKT AFAIPI+QKL P +ALILTPT ELA QI +F LG+ LK IVGG + Q + L S + HVVV TPGR+ L+ + + FK ++F VLDEADRML + + L I ES+ + RQT L SAT+TN + L V + P E K ++ C + +LV+ ++ N S++N S+V++F +T ++ + L + L V L S + + +R AL +F S + V++ TDVASRGLDIP+V LV+N VP+ K Y+HRVGR+ARAGR G A+S T Y L +E+ +G + + V
Sbjct: 90 KFSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQAREL-SERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESISEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQKYVVCPVAVKDAYLVYVVK---NYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLDELKV 465
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Celegans
Match: H20J04.4 (pep chromosome:WBcel235:II:4329023:4334484:1 gene:WBGene00019219.1 transcript:H20J04.4b.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:H20J04.4) HSP 1 Score: 245.743 bits (626), Expect = 5.091e-75 Identity = 149/380 (39.21%), Postives = 219/380 (57.63%), Query Frame = 3
Query: 51 KFEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRV--LLHINKKLLN--FKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDE-RVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSIDV 1175
KF +LGV ++++++ + T +Q IP +L+ +D++ A TG+GKT AFAIPI+QKL P +ALILTPT ELA QI +F LG+ LK IVGG + Q + L S + HVVV TPGR+ L+ + + FK ++F VLDEADRML + + L I ES+ + RQT L SAT+TN + L V + P E K ++ C + +LV+ ++ N S++N S+V++F +T ++ + L + L V L S + + +R AL +F S + V++ TDVASRGLDIP+V LV+N VP+ K Y+HRVGR+ARAGR G A+S T Y L +E+ +G + + V
Sbjct: 90 KFSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQAREL-SERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESISEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQKYVVCPVAVKDAYLVYVVK---NYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLDELKV 465
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Celegans
Match: ddx-27 (DEAD boX helicase homolog [Source:UniProtKB/TrEMBL;Acc:Q95XM9]) HSP 1 Score: 225.713 bits (574), Expect = 5.263e-66 Identity = 138/355 (38.87%), Postives = 204/355 (57.46%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKH---NFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDE--RVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISL 1100
FE++ + + + G+++PT IQ+ IP+ L D+ A A TG+GKT AF +PI++++ +PK L+L PT ELA+Q+ F KL L+V GG ++ Q L+S VVV TPGR++ H+ N N + LVLDEADRML + F + + +I + RQT LFSATMT ++++L S+ ++ P++ ++ T L Q+ + R E R + + T N IVF TKKD + + LLG L I V +QS +T+ +R +L F ++ VLV+TD+ASRGLDI V VIN +P+S K Y+HRVGRTARAG++G +ISL
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGP-DVVVATPGRLIDHLHNSPSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGRETDREAMVAALVTRTFQT-------NTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISL 496
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Fly
Match: CG9253 (gene:FBgn0032919 transcript:FBtr0081468) HSP 1 Score: 282.722 bits (722), Expect = 9.796e-90 Identity = 161/390 (41.28%), Postives = 245/390 (62.82%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGG-EFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQS--LLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSIDVPRNEFEEIQDNV 1211
++ LG++ L + +++ W P++IQR+ IP+ L+ DV+ LAETGSGKTGAFA+PI+ L + P+ FAL+LTPT ELA QI +F LG G+K +VGG + V +L K K H+++ TPGR++ H+ N K N K +++LV+DEADR+L+ DF +L I++ LP+ R+T LFSATMT K++KL+ +K+P++ EVS K+QTV+ L + LF+ K + L++ +E ++ ++F T +T +L L ++ L M++ +R AL+ F + ++L++TDVASRGLDIP+V +V+NF +P SKDY+HRVGRTARAGRSG AI+L + Y IE LG + +E +Q+ V
Sbjct: 63 WKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAK--KPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQL----------QQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGKQLTLYKCEEDEVMALQERV 440
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Fly
Match: Dbp45A (gene:FBgn0010220 transcript:FBtr0088564) HSP 1 Score: 254.218 bits (648), Expect = 1.248e-78 Identity = 148/361 (41.00%), Postives = 221/361 (61.22%), Query Frame = 3
Query: 45 GNKFEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGG--EFVEDQTKLLKSNKCHVVVGTPGRVLLHINK-KLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEK-----LESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDD-ERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISL 1100
N F+ LG+ L +++ K+G T IQ+K IP +L D + A+TGSGKT AFA+PI+++L ++P +FAL+LTPTHELA QI +F+ G+ G++V + GG + VE Q KL++ + H+VV PGR+ H+ +F L++LV+DEADRML+ DF L+ I LPK RQ FSATM + +++ + S C E S+ T + C D +R + L+ ++L +EN+++NV++FT TKK ++L L ++I L M + ER AL F S ++ L+ATDVA+RGLDIP+V LV+N +P + K+Y+HRVGRTARAGR G++IS+
Sbjct: 6 ANPFQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQ-KLMQ--RPHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLPKTRQNLFFSATMKDFIKESSIFPIASDCF------EWSQDSDVATVETLDQRYLLCADYDRDMVLI---EALRKYREENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISI 354
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Fly
Match: vas (gene:FBgn0283442 transcript:FBtr0445187) HSP 1 Score: 209.149 bits (531), Expect = 2.821e-60 Identity = 126/349 (36.10%), Postives = 189/349 (54.15%), Query Frame = 3
Query: 87 EKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFAL------ILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIE--SLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDD-ERVLFLVWKL--QSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISL 1100
+ + K G+ PT IQ+ IP++ D++A A+TGSGKT AF +PI+ KL + P H L I++PT ELA+QI NE K E LK+ + GG Q + + + CHVV+ TPGR+L +++ + F+ RF+VLDEADRML F D+ I+ ++ QT +FSAT +++++ +KN + + + C D ++ ++ V K +S L Q+ IVF ETK+ L L E + + D + +R+ AL F +G + VL+AT VASRGLDI N+ VIN+ +P DY+HR+GRT R G +G A S
Sbjct: 258 DNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP-HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI-TRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIG------------IVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSF 592
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Fly
Match: vas (gene:FBgn0283442 transcript:FBtr0445185) HSP 1 Score: 209.149 bits (531), Expect = 2.821e-60 Identity = 126/349 (36.10%), Postives = 189/349 (54.15%), Query Frame = 3
Query: 87 EKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFAL------ILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIE--SLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDD-ERVLFLVWKL--QSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISL 1100
+ + K G+ PT IQ+ IP++ D++A A+TGSGKT AF +PI+ KL + P H L I++PT ELA+QI NE K E LK+ + GG Q + + + CHVV+ TPGR+L +++ + F+ RF+VLDEADRML F D+ I+ ++ QT +FSAT +++++ +KN + + + C D ++ ++ V K +S L Q+ IVF ETK+ L L E + + D + +R+ AL F +G + VL+AT VASRGLDI N+ VIN+ +P DY+HR+GRT R G +G A S
Sbjct: 258 DNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP-HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI-TRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIG------------IVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSF 592
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Fly
Match: vas (gene:FBgn0283442 transcript:FBtr0445186) HSP 1 Score: 209.149 bits (531), Expect = 2.821e-60 Identity = 126/349 (36.10%), Postives = 189/349 (54.15%), Query Frame = 3
Query: 87 EKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFAL------ILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIE--SLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDD-ERVLFLVWKL--QSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISL 1100
+ + K G+ PT IQ+ IP++ D++A A+TGSGKT AF +PI+ KL + P H L I++PT ELA+QI NE K E LK+ + GG Q + + + CHVV+ TPGR+L +++ + F+ RF+VLDEADRML F D+ I+ ++ QT +FSAT +++++ +KN + + + C D ++ ++ V K +S L Q+ IVF ETK+ L L E + + D + +R+ AL F +G + VL+AT VASRGLDI N+ VIN+ +P DY+HR+GRT R G +G A S
Sbjct: 258 DNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP-HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI-TRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIG------------IVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSF 592
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Zebrafish
Match: ddx49 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:ZFIN;Acc:ZDB-GENE-031030-3]) HSP 1 Score: 254.603 bits (649), Expect = 2.740e-79 Identity = 154/359 (42.90%), Postives = 215/359 (59.89%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSD---DFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERV--LFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIY 1112
FE LG+ L ++ +++G + PT +Q K IP +L D + A+TGSGKT AF +P++QKL + P F L+LTPT ELA QI +F LG+ GLK IVGG + Q L S K HVVV TPGR+ HI + +N ++FL++DEADR+L DF DL I+ ++P RQT LFSAT+T+ L++L+S+ + P E VQT+ + F E+V +LV +Q+ DE+ ++I+FT T K +IL +L E + L S M + +R L F S +L+ATDVA+RGLDIP V +VIN P K Y+HRVGRTARAGR+G++I+L T Y
Sbjct: 4 FESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQKLSEDPYGVFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLEL-SKKPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPVKRQTLLFSATLTDTLQQLQSIAMNRPFFWE---HKSDVQTVKELDQRFILTPEKVKDAYLVHLIQTF---QDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKSNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQY 355
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Zebrafish
Match: eif4a3 (eukaryotic translation initiation factor 4A3 [Source:NCBI gene;Acc:394053]) HSP 1 Score: 211.075 bits (536), Expect = 3.241e-63 Identity = 115/349 (32.95%), Postives = 198/349 (56.73%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISL 1100
F+ +G+ +L I G+ +P+ IQ++ I ++K DV+A +++G+GKT F + ++Q L + + ALIL PT ELA QI+ + LG+ ++ +GG V + + L + HVV GTPGRV I ++ L + ++ LVLDEAD ML+ F + + LP Q CL SAT+ +++ ++ + + +P+R V R T++ + Q + ++ WK +L + D + ++F TK+ L + E + +V+ + DM + ER++ + F SG VL++TDV +RGLD+P V L+IN+ +P + + Y+HR+GR+ R GR G+AI+
Sbjct: 35 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ-HVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE-------WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINF 375
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Zebrafish
Match: ddx23 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:ZFIN;Acc:ZDB-GENE-030131-6215]) HSP 1 Score: 206.453 bits (524), Expect = 1.084e-58 Identity = 125/380 (32.89%), Postives = 201/380 (52.89%), Query Frame = 3
Query: 87 EKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPI---------IQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLP--------------------------KMRQTCLFSATMTNKLEKLESVCVKNP---LRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVW--KLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLAT 1106
E IEK G+ +PT IQR+ IP+ L+ D++ +AETGSGKT AF IP+ I ++ D + +A+IL PT ELA QI+ E +K G+ G++ V ++GG EDQ L+ C +V+ TPGR++ + + L ++VLDEADRM+ F D+ I+E +P K RQT +F+ATM +E+L ++ P + H+ V +++V+ + K + LL +I+F KK +L + L ++ + L + +R+ AL + +G +LVATDVA RG+DI +V +V+N+ + ++ +DY+HR+GRT RAG+SG+A++ T
Sbjct: 331 EVIEKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEDSDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMG-CEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEYIPVTNQKPDTDDAEDPEKMMQNFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERV-------------EQKVILMSEGEKRKKLLEVLASGFEPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLT 696
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Zebrafish
Match: ddx54 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Source:ZFIN;Acc:ZDB-GENE-021220-2]) HSP 1 Score: 207.608 bits (527), Expect = 1.123e-58 Identity = 133/359 (37.05%), Postives = 198/359 (55.15%), Query Frame = 3
Query: 33 KMFGGNKFEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNF---ALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISL 1100
K GG F+ +G+ + + I K G+ PT IQRK IP++L DVVA+A TGSGKT AF +P+ +KL P+ ALILTPT ELA+Q +LG+ GL+ I+GG+ ++DQ L N +++GTPGR++ I + L +++ ++V DEADR+ F L II LP RQT LFSAT+ + + + P+ + + + L R DD+ L L L++++ ++ +VF TK + L LL + + + S + + R+ ++ F KV +L+ TDVA+RG+DIP + VIN+ P K +LHRVGR ARAGR G A SL
Sbjct: 75 KKSGG--FQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFEKL-KAPQAQTGARALILTPTRELALQTMKFTKELGKFTGLRTALILGGDSMDDQFAALHENP-DIIIGTPGRLMHVIQEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIRRLPDARQTLLFSATLPKLIVEFARAGLTEPVLIRLDVDTKLSEQLKLSFFSLRLDDKPALLLHL-LRNVVKPQEQ-----TVVFVATKHHVEYLKELLSAEGVDCSCIYSALDQTARKISIGRFVHRKVMLLLVTDVAARGIDIPLLDNVINYNFPCKPKLFLHRVGRVARAGRGGTAYSL 423
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Zebrafish
Match: ddx27 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Source:ZFIN;Acc:ZDB-GENE-031001-8]) HSP 1 Score: 205.682 bits (522), Expect = 2.674e-58 Identity = 125/353 (35.41%), Postives = 202/353 (57.22%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHN---FALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISL 1100
F+ + + L + I +G+ +PT IQ+ +P+ L D+ A A TG+GKT AF +P++++L KP+ L+L PT EL +Q+ +L + + VGG ++ Q L++ V++ TPGR++ H+ N + L+LDEADRML + F + II RQT LFSATM+ +++ L SV +K P+R V+ L Q+ + R + E + + +LL + ++ +V++FT+TKK ++ LLG + + V L ++++ +R +L F ++ +LVATDVA+RGLDI V VINF +P + K Y+HRVGRTARAG+ G ++SL
Sbjct: 203 FQDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLERLIYKPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAALRAG-PDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQRQTMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAI--VAALLTRTFQD---HVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSL 549
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Xenopus
Match: mki67 (marker of proliferation Ki-67 [Source:Xenbase;Acc:XB-GENE-6457930]) HSP 1 Score: 288.115 bits (736), Expect = 2.746e-92 Identity = 157/354 (44.35%), Postives = 228/354 (64.41%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIY 1112
F +LGV L E E++GW +PT+IQ + IP+ L+ D++ LAETGSGKTGAFA+PI+Q L + P+ +AL+LTPT ELA QI +F LG G+K IVGG + Q+ L + K HVV+ TPGR++ H+ N K N + L++LV+DEADR+L+ DF ++ I++ +P+ R+T LFSATMT K++KL+ +K+P++ VS K+ QQ +F + +LV+ L L S ++F T +T+ + LL L + L M++ +R +L+ F + ++L+ATDVASRGLDIP+V +VINF +P SKDY+HRVGRTARAGRSG AI+ + Y
Sbjct: 21 FRELGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQTLLESPQRLYALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQS-LALAKKPHVVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKY-QTVEKLQQFYVFIPSKFKDSYLVYILNELAGNS-------FMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQY 365
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Xenopus
Match: mki67 (marker of proliferation Ki-67 [Source:Xenbase;Acc:XB-GENE-6457930]) HSP 1 Score: 285.034 bits (728), Expect = 4.222e-91 Identity = 156/351 (44.44%), Postives = 226/351 (64.39%), Query Frame = 3
Query: 63 LGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIY 1112
LGV L E E++GW +PT+IQ + IP+ L+ D++ LAETGSGKTGAFA+PI+Q L + P+ +AL+LTPT ELA QI +F LG G+K IVGG + Q+ L + K HVV+ TPGR++ H+ N K N + L++LV+DEADR+L+ DF ++ I++ +P+ R+T LFSATMT K++KL+ +K+P++ VS K+ QQ +F + +LV+ L L S ++F T +T+ + LL L + L M++ +R +L+ F + ++L+ATDVASRGLDIP+V +VINF +P SKDY+HRVGRTARAGRSG AI+ + Y
Sbjct: 20 LGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQTLLESPQRLYALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQS-LALAKKPHVVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKY-QTVEKLQQFYVFIPSKFKDSYLVYILNELAGNS-------FMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQY 361
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Xenopus
Match: mki67 (marker of proliferation Ki-67 [Source:Xenbase;Acc:XB-GENE-6457930]) HSP 1 Score: 283.878 bits (725), Expect = 7.741e-91 Identity = 155/350 (44.29%), Postives = 225/350 (64.29%), Query Frame = 3
Query: 66 GVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIY 1112
GV L E E++GW +PT+IQ + IP+ L+ D++ LAETGSGKTGAFA+PI+Q L + P+ +AL+LTPT ELA QI +F LG G+K IVGG + Q+ L + K HVV+ TPGR++ H+ N K N + L++LV+DEADR+L+ DF ++ I++ +P+ R+T LFSATMT K++KL+ +K+P++ VS K+ QQ +F + +LV+ L L S ++F T +T+ + LL L + L M++ +R +L+ F + ++L+ATDVASRGLDIP+V +VINF +P SKDY+HRVGRTARAGRSG AI+ + Y
Sbjct: 9 GVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQTLLESPQRLYALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQS-LALAKKPHVVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKY-QTVEKLQQFYVFIPSKFKDSYLVYILNELAGNS-------FMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQY 349
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Xenopus
Match: mki67 (marker of proliferation Ki-67 [Source:Xenbase;Acc:XB-GENE-6457930]) HSP 1 Score: 283.878 bits (725), Expect = 1.253e-90 Identity = 155/350 (44.29%), Postives = 225/350 (64.29%), Query Frame = 3
Query: 66 GVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIY 1112
GV L E E++GW +PT+IQ + IP+ L+ D++ LAETGSGKTGAFA+PI+Q L + P+ +AL+LTPT ELA QI +F LG G+K IVGG + Q+ L + K HVV+ TPGR++ H+ N K N + L++LV+DEADR+L+ DF ++ I++ +P+ R+T LFSATMT K++KL+ +K+P++ VS K+ QQ +F + +LV+ L L S ++F T +T+ + LL L + L M++ +R +L+ F + ++L+ATDVASRGLDIP+V +VINF +P SKDY+HRVGRTARAGRSG AI+ + Y
Sbjct: 27 GVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQTLLESPQRLYALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQS-LALAKKPHVVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKY-QTVEKLQQFYVFIPSKFKDSYLVYILNELAGNS-------FMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQY 367
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Xenopus
Match: mki67 (marker of proliferation Ki-67 [Source:Xenbase;Acc:XB-GENE-6457930]) HSP 1 Score: 283.493 bits (724), Expect = 1.490e-90 Identity = 155/350 (44.29%), Postives = 225/350 (64.29%), Query Frame = 3
Query: 66 GVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIY 1112
GV L E E++GW +PT+IQ + IP+ L+ D++ LAETGSGKTGAFA+PI+Q L + P+ +AL+LTPT ELA QI +F LG G+K IVGG + Q+ L + K HVV+ TPGR++ H+ N K N + L++LV+DEADR+L+ DF ++ I++ +P+ R+T LFSATMT K++KL+ +K+P++ VS K+ QQ +F + +LV+ L L S ++F T +T+ + LL L + L M++ +R +L+ F + ++L+ATDVASRGLDIP+V +VINF +P SKDY+HRVGRTARAGRSG AI+ + Y
Sbjct: 20 GVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQTLLESPQRLYALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQS-LALAKKPHVVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKY-QTVEKLQQFYVFIPSKFKDSYLVYILNELAGNS-------FMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQY 360
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Mouse
Match: Ddx47 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Source:MGI Symbol;Acc:MGI:1915005]) HSP 1 Score: 286.574 bits (732), Expect = 9.664e-92 Identity = 157/356 (44.10%), Postives = 230/356 (64.61%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQS--LLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIY 1112
F+ LGV L E +++GW +PT+IQ + IPL L+ D++ LAETGSGKTGAFA+PI+ L + P+ FAL+LTPT ELA QI +F LG G++ IVGG Q+ L + K H+V+ TPGR++ H+ N K N + L++LV+DEADR+L+ DF ++ I++ +P+ R+T LFSATMT K++KL+ +KNP++ VS K+QTV+ L + LF+ K + L+ +E ++ ++F T +T+ LL L + L M++ +R +L+ F + ++L+ATDVASRGLDIP+V +V+NF +P SKDY+HRVGRTARAGRSG AI+ T Y
Sbjct: 26 FKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQS-LALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKL----------QQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQY 370
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Mouse
Match: Ddx47 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Source:MGI Symbol;Acc:MGI:1915005]) HSP 1 Score: 263.462 bits (672), Expect = 9.086e-84 Identity = 148/356 (41.57%), Postives = 217/356 (60.96%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQS--LLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIY 1112
F+ LGV L E +++GW +PT+IQ + IPL L+ D++ LAETGSGKTGAFA+PI+ L + P+ FAL+LTPT ELA QI +F LG G++ TPGR++ H+ N K N + L++LV+DEADR+L+ DF ++ I++ +P+ R+T LFSATMT K++KL+ +KNP++ VS K+QTV+ L + LF+ K + L+ +E ++ ++F T +T+ LL L + L M++ +R +L+ F + ++L+ATDVASRGLDIP+V +V+NF +P SKDY+HRVGRTARAGRSG AI+ T Y
Sbjct: 26 FKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQ-------------------------CATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKL----------QQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQY 346
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Mouse
Match: Ddx47 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Source:MGI Symbol;Acc:MGI:1915005]) HSP 1 Score: 262.307 bits (669), Expect = 1.828e-83 Identity = 149/354 (42.09%), Postives = 209/354 (59.04%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIY 1112
F+ LGV L E +++GW +PT+IQ + IPL L+ D++ LAETGSGKTGAFA+PI+ L + P+ FAL+LTPT ELA QI +F LG G++ IVGG Q+ L + K H+V+ TPGR++ H+ N K N + L++LV+DEADR+L+ DF ++ I++ +P+ R+T LFSATMT K++KL+ +KNP++ VS K+QT V KLQ +F +K +K R +L+ F + ++L+ATDVASRGLDIP+V +V+NF +P SKDY+HRVGRTARAGRSG AI+ T Y
Sbjct: 23 FKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQS-LALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQT---------------------VEKLQ------------QYYLFIPSKFKSK------------------------RLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQY 318
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Mouse
Match: Ddx49 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:MGI Symbol;Acc:MGI:2136689]) HSP 1 Score: 255.758 bits (652), Expect = 1.868e-79 Identity = 156/393 (39.69%), Postives = 220/393 (55.98%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGG-EFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSD---DFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPL--RAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSIDVPRNEFEEIQDNV 1211
F ++G+ L E+ ++G +PT +Q IP +L+ D + A+TGSGKT AF +PI+QKL + P F L+LTPT ELA QI +F LG+ GLK IVGG + V +L S K HVV+ TPGR+ H+ + N K ++FLV+DEADR+L DF DL I+ ++P RQT LFSAT+T+ L++L+ + P A+ + + + + D ++ LV Q D+ + ++I+FT T K +IL +L + + L S M + ER AL F S +L+ATDVASRGLDIP V +VIN P K Y+HRVGRTARAGR G AI+L T Y L IE+ + + + V E +I V
Sbjct: 4 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALEL--SRKPHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARRQTLLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQTFQ------DQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLHAIEEQIKQQLAELVVEEAEVLQILTQV 388
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Mouse
Match: Eif4a3 (eukaryotic translation initiation factor 4A3 [Source:MGI Symbol;Acc:MGI:1923731]) HSP 1 Score: 209.92 bits (533), Expect = 1.098e-62 Identity = 115/349 (32.95%), Postives = 199/349 (57.02%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISL 1100
F+ +G+ +L I G+ +P+ IQ++ I ++K DV+A +++G+GKT F++ ++Q L + + ALIL PT ELAVQI+ + LG+ ++ +GG V + + L + HVV GTPGRV I ++ L + ++ LVLDEAD ML+ F + + LP Q L SAT+ +++ ++ + + +P+R V R T++ + Q + ++ WK +L + D + ++F TK+ L + E + +V+ + DM + ER++ + F SG VL++TDV +RGLD+P V L+IN+ +P + + Y+HR+GR+ R GR G+AI+
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ-HVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE-------WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINF 380
BLAST of ATP-dependent rRNA helicase RRP3 vs. UniProt/SwissProt
Match: sp|A2RB17|RRP3_ASPNC (ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rrp3 PE=3 SV=1) HSP 1 Score: 295.819 bits (756), Expect = 2.351e-94 Identity = 170/387 (43.93%), Postives = 232/387 (59.95%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSIDVPRNEFEEIQDNV 1211
F++LG+ L E E +G+ PT IQR+ IPL LK D++ LAETGSGKT AFA+PI+Q L +KP+ F L+L PT ELA QI F LG G++ IVGG + Q+ L K H++V TPGR+L H+ N K + + L++LV+DEADR+L DF L I++ LP+ R+T LFSATM++K+E L+ + NPLR VS + Q LF + L+LV+ LLN E + I+FT T +T+ L LL L L +++ R AL F + +LVATDVA+RGLDIP+V +V+NF +P S Y+HRVGRTARAG+SGLAIS Y + IE LG +K D P++E + +NV
Sbjct: 50 FKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKPQPFFGLVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISL-GKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESLQRASLSNPLRVSVSTSKYQTVSTLLQSYLFIPQKHKDLYLVY----LLN---EFAGQSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNILVATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWLRIEGALGKKLKEYDCPKDEVMVLGENV 428
BLAST of ATP-dependent rRNA helicase RRP3 vs. UniProt/SwissProt
Match: sp|P34580|DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans OX=6239 GN=T26G10.1 PE=3 SV=1) HSP 1 Score: 291.967 bits (746), Expect = 1.598e-92 Identity = 162/379 (42.74%), Postives = 234/379 (61.74%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSIDVPRNE 1187
F +LGV L + +++GW +P++IQ+ +P L+ DV+ LAETGSGKTGAFAIP++Q L D P+ F L+LTPT ELA QI +F LG GL IVGG + Q L + + H++V TPGR++ H+ N K N K L+FL++DEADR+L+ DF +L I++ +P+ R+T LFSATMT K+ KLE +++P R VS ++ +Q +F + + +LV+ LLN E+ ++ IVF T T + +L +L + L M++ +R +L+ F S +LV TDVA+RGLDIP+V +VIN+ +P SKDY+HRVGRTARAGRSG+AI++ T Y IE +LG + NE
Sbjct: 46 FAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMAL-ARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLFSATMTKKVSKLERASLRDPARVSVSSRY-KTVDNLKQHYIFVPNKYKETYLVY----LLN---EHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEANLGKKLDEYKCVENE 415
BLAST of ATP-dependent rRNA helicase RRP3 vs. UniProt/SwissProt
Match: sp|Q2H1Q8|RRP3_CHAGB (ATP-dependent rRNA helicase RRP3 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=RRP3 PE=3 SV=1) HSP 1 Score: 291.197 bits (744), Expect = 3.517e-92 Identity = 163/371 (43.94%), Postives = 229/371 (61.73%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGG-EFVEDQTKLLKSNKCHVVVGTPGRVLLHINK-KLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITM 1160
F+ LG+ +L + +++GW +PT IQ++ IPL L++ D++ LAETGSGKTGAFA+PI+Q L DKP+ FAL+L PT ELA QI F LG L+ I+GG + V+ L K K HVVV TPGR+L H+ K K + + LR+LV+DEADR+L DF L I++ LP+ R+T LFSATM++K+E L+ C+++PL+ +S + Q +F + +L++ L N E +I+FT T +T+ + LL L + L +++ R AL+ F +G +LVATDVA+RGLDIPNV V+N +P SK Y+HRVGRTARAGRSG AIS T Y + IE LG +
Sbjct: 67 FQDLGIVDSLCDACKELGWKKPTPIQQESIPLALQDRDIIGLAETGSGKTGAFALPILQALLDKPQPLFALVLAPTRELAAQIAQSFEALGSLISLRCALILGGLDMVQQAIALGK--KPHVVVATPGRLLDHLEKTKGFSLRNLRYLVMDEADRLLDMDFGPILDKILKFLPRERRTFLFSATMSSKVESLQRACLRDPLKVSISSSKYQTVSTLVQNYVFIPHTHKDTYLIY----LCN---EFAGQTIIIFTRTVIETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRDILVATDVAARGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAISFVTQYDLELWLRIEAALGTKL 428
BLAST of ATP-dependent rRNA helicase RRP3 vs. UniProt/SwissProt
Match: sp|Q6CH58|RRP3_YARLI (ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=RRP3 PE=3 SV=1) HSP 1 Score: 290.041 bits (741), Expect = 7.522e-92 Identity = 161/374 (43.05%), Postives = 232/374 (62.03%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXX--XFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKS 1166
F+ LGV ++ E E++ + +PT IQ + IP L+ D++ LA+TGSGKT AFAIP++Q L++ P+ + ++L PT ELA QI F LG GL+ +VGG + Q L S K HV+V TPGR++ H+ N K + +TL+FLV+DEADR+L +F L I++ +P+ R T LFSATMT+K+EKL+ + +P+R VS K+QT L Q + F+ D +++LV EN +++I+F TK DT+ + LL L L D+++ R AL+ F SG +L+ATDVASRGLDIP V LVIN+ +P SK Y+HRVGRTARAGR+G +++L + Y + IE LG + S
Sbjct: 66 FKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLYENPQPLYCVVLAPTRELAYQISETFEALGSAMGLRTAVVVGGMNMMTQAVAL-SKKPHVIVATPGRLVDHLENTKGFSLRTLKFLVMDEADRLLDMEFGPSLDKILKVIPRQRNTYLFSATMTSKVEKLQRASLVDPVRVAVSTKYQTADNLLQYMVFCPFKHKDTHLVYLV----------SENAGNSMIIFARTKSDTQRISLLLRNLGYGAIPLHGDLSQTARLGALNKFKSGSRNILIATDVASRGLDIPAVDLVINYDIPSDSKSYIHRVGRTARAGRAGKSVALVSQYDLELYLRIEGALGKKLDS 428
BLAST of ATP-dependent rRNA helicase RRP3 vs. UniProt/SwissProt
Match: sp|Q29S22|DDX47_BOVIN (Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus OX=9913 GN=DDX47 PE=2 SV=1) HSP 1 Score: 287.73 bits (735), Expect = 2.664e-91 Identity = 157/356 (44.10%), Postives = 230/356 (64.61%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQS--LLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIY 1112
F+ LGV L E +++GW +PT+IQ + IPL L+ D++ LAETGSGKTGAFA+PI+ L + P+ FAL+LTPT ELA QI +F LG G++ IVGG Q+ L + K H+V+ TPGR++ H+ N K N + L++LV+DEADR+L+ DF ++ I++ +P+ R+T LFSATMT K++KL+ +KNP++ VS K+QTV+ L + LF+ K + L+ +E ++ ++F T +T+ LL L + L M++ +R +L+ F + ++L+ATDVASRGLDIP+V +V+NF +P SKDY+HRVGRTARAGRSG AI+ T Y
Sbjct: 28 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQS-LALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKL----------QQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQY 372
BLAST of ATP-dependent rRNA helicase RRP3 vs. TrEMBL
Match: A0A4S2MFQ5 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_000246 PE=4 SV=1) HSP 1 Score: 341.658 bits (875), Expect = 2.374e-110 Identity = 184/389 (47.30%), Postives = 263/389 (67.61%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAM-------LQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVP------ESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSIDVP 1178
F KLG+ + + I+K+GW++P+EIQ K IP L+ DVV LAETGSGKT AFAIPI+Q L KPKHNFAL+LTPT ELA+Q+K++FM LGE GL+V+ +VGG+ VEDQT+ LK +K H+++GTPGR+ H+ N K L +R+LVLDEAD+ML D F ++L+AII +LP +T L+SAT++ K++KL+ +C ++P+ EVS ++ + +F + ER ++LV+ L+++ S +S IVFT T +++ +R+ L+ + L M + +RQN+L SF +G+ A LVATD+ASRGLDIP+V L+IN+ VP +S+K Y+HRVGRTARAGRSG AI+L T Y+ L IE LG + + P
Sbjct: 6 FAKLGICQEILDVIKKLGWSKPSEIQAKTIPQALRGKDVVGLAETGSGKTAAFAIPILQDLISKPKHNFALVLTPTRELALQLKSQFMDLGEVYGLRVICLVGGQHVEDQTRDLKVSKYHIIIGTPGRICYHLENSKDLRLNHIRYLVLDEADQMLEDTFEDELSAIIANLPPNHRTYLYSATLSPKVQKLQEICTRSPIIVEVSLEY-SKVKKLDHAFVFIPEQERDVYLVYALKTI---SKAAANSRTIVFTTTWRES---FRIASLLNNLSQLLGGKAVPLNGAMQQDKRQNSLFSFRAGQAAFLVATDLASRGLDIPDVDLIINYDVPRRPSWSDSAKAYIHRVGRTARAGRSGRAITLVTPYSATRLKAIEAALGECIPQLPWP 387
BLAST of ATP-dependent rRNA helicase RRP3 vs. TrEMBL
Match: A0A1S8WXX1 (DEAD/DEAH box helicase (Fragment) OS=Opisthorchis viverrini OX=6198 GN=X801_04873 PE=4 SV=1) HSP 1 Score: 340.887 bits (873), Expect = 4.605e-110 Identity = 184/388 (47.42%), Postives = 259/388 (66.75%), Query Frame = 3
Query: 48 NKFEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDI----SVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVP------ESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSIDVP 1178
N F+ G+ + + I+K+GW++P+EIQ K IP L+ DVV LAETGSGKT AFAIPI+Q L KPKHNFAL+LTPT ELA+Q+K++FM LGE GL+V+ +VGG+ VEDQT+ LK +K H+++GTPGR+ H+ N K L +R+LVLDEAD+ML D F + L+AII SLP +T L+SAT++ K++KL+ +C ++P+ EVS ++ + +F + ER ++LV+ L+++ S +S IVFT T +++ + L L L M + +RQN+L SF +G+ A LVATD+ASRGLDIP+V L+IN+ VP +S+K Y+HRVGRTARAGRSG AI+L T Y+ L IE LG + + P
Sbjct: 17 NHFQ--GICQEILDVIKKLGWSKPSEIQAKTIPQALRGKDVVGLAETGSGKTAAFAIPILQDLISKPKHNFALVLTPTRELALQLKSQFMDLGEVYGLRVICLVGGQHVEDQTRDLKISKYHIIIGTPGRICYHLENSKDLRLNHVRYLVLDEADQMLEDTFESQLSAIIASLPPNHRTYLYSATLSPKVQKLQEICTRSPIIVEVSLEY-SKVKKLDHAFVFIPEQERDVYLVYALKTI---SKAAANSRTIVFTTTWRESFRIASFLNSLSQLLGGKAVPLNGAMQQDKRQNSLFSFRAGQAAFLVATDLASRGLDIPDVDLIINYDVPRRPSWSDSAKAYIHRVGRTARAGRSGRAITLVTPYSATRLKAIEAALGECIPQLPWP 398
BLAST of ATP-dependent rRNA helicase RRP3 vs. TrEMBL
Match: A0A4S2MKH8 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_000246 PE=4 SV=1) HSP 1 Score: 341.658 bits (875), Expect = 6.358e-110 Identity = 184/389 (47.30%), Postives = 263/389 (67.61%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAM-------LQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVP------ESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSIDVP 1178
F KLG+ + + I+K+GW++P+EIQ K IP L+ DVV LAETGSGKT AFAIPI+Q L KPKHNFAL+LTPT ELA+Q+K++FM LGE GL+V+ +VGG+ VEDQT+ LK +K H+++GTPGR+ H+ N K L +R+LVLDEAD+ML D F ++L+AII +LP +T L+SAT++ K++KL+ +C ++P+ EVS ++ + +F + ER ++LV+ L+++ S +S IVFT T +++ +R+ L+ + L M + +RQN+L SF +G+ A LVATD+ASRGLDIP+V L+IN+ VP +S+K Y+HRVGRTARAGRSG AI+L T Y+ L IE LG + + P
Sbjct: 6 FAKLGICQEILDVIKKLGWSKPSEIQAKTIPQALRGKDVVGLAETGSGKTAAFAIPILQDLISKPKHNFALVLTPTRELALQLKSQFMDLGEVYGLRVICLVGGQHVEDQTRDLKVSKYHIIIGTPGRICYHLENSKDLRLNHIRYLVLDEADQMLEDTFEDELSAIIANLPPNHRTYLYSATLSPKVQKLQEICTRSPIIVEVSLEY-SKVKKLDHAFVFIPEQERDVYLVYALKTI---SKAAANSRTIVFTTTWRES---FRIASLLNNLSQLLGGKAVPLNGAMQQDKRQNSLFSFRAGQAAFLVATDLASRGLDIPDVDLIINYDVPRRPSWSDSAKAYIHRVGRTARAGRSGRAITLVTPYSATRLKAIEAALGECIPQLPWP 387
BLAST of ATP-dependent rRNA helicase RRP3 vs. TrEMBL
Match: A0A4E0R1D2 (ATP-dependent rRNA helicase OS=Fasciola hepatica OX=6192 GN=D915_008057 PE=4 SV=1) HSP 1 Score: 336.65 bits (862), Expect = 6.155e-108 Identity = 182/389 (46.79%), Postives = 254/389 (65.30%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLG-------ELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVP------ESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSIDVP 1178
F +LGV + + IEK+GW +P+EIQ K IP L+ D+V LAETGSGKT AFAIPI+Q L KP+HNFAL+LTPT ELA+Q+K++F+ LGE GL+V+ +VGG+ VEDQ + LK NK H+++GTPGR++ H+ N K L +R+LVLDEAD+ML D F + L I+ +P+ +T L+SATM+ K+ K++SVC K+P+ +VS K+ F D ER ++LV+ L + + +N S IVFT T +++ +R+ + +V+ L M + +RQNAL F GK +LVATD+ASRGLDIP+V LVIN+ VP +S+K Y+HRVGRTARAGR G A++L T Y+ L IE LG + + P
Sbjct: 3 FAQLGVCKEILDVIEKLGWEKPSEIQTKAIPPSLRGRDIVGLAETGSGKTAAFAIPILQDLISKPRHNFALVLTPTRELALQLKSQFLDLGEAYGLRVICLVGGQHVEDQLRDLKINKFHIIIGTPGRIVYHLENSKDLRLNRIRYLVLDEADQMLEDTFDSHLEIIVSRIPESHKTYLYSATMSQKVSKIQSVCSKSPVTIQVSNKY-AKVERLDHAFTFLPDQERDIYLVYLLSCAASKTTDNSRS--IVFTTTWRES---FRIASLLGLLGPLVGGTVSPLNGAMQQDKRQNALFGFRLGKTNILVATDLASRGLDIPDVDLVINYDVPKRPSWSDSAKAYIHRVGRTARAGRPGRAVTLVTPYSASRLKAIEAALGERVPQLPWP 385
BLAST of ATP-dependent rRNA helicase RRP3 vs. TrEMBL
Match: A0A504YV23 (DEAD box ATP-dependent RNA helicase OS=Fasciola gigantica OX=46835 GN=FGIG_08448 PE=4 SV=1) HSP 1 Score: 336.65 bits (862), Expect = 6.497e-108 Identity = 181/389 (46.53%), Postives = 253/389 (65.04%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLG-------ELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVP------ESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSIDVP 1178
F +LGV + + IEK+GW +P+EIQ K IP L+ D+V LAETGSGKT AFAIPI+Q L KP+HNFAL+LTPT ELA+Q+K++F+ LGE GL+V+ +VGG+ VEDQ + LK NK H+++GTPGR++ H+ N K L +R+LVLDEAD+ML D F + L I+ +P+ +T L+SATM+ K+ K++SVC K+P+ +VS K+ F D ER ++LV+ L + + +N S IVFT T +++ +R+ + + + L M + +RQNAL F GK +LVATD+ASRGLDIP+V LVIN+ VP +S+K Y+HRVGRTARAGR G A++L T Y+ L IE LG + + P
Sbjct: 3 FAQLGVCKEILDVIEKLGWEKPSEIQTKAIPPSLRGRDIVGLAETGSGKTAAFAIPILQDLISKPRHNFALVLTPTRELALQLKSQFLDLGEAYGLRVICLVGGQHVEDQLRDLKINKFHIIIGTPGRIVYHLENSKDLRLNRIRYLVLDEADQMLEDTFDSHLEIIVSRIPESHKTYLYSATMSQKVNKIQSVCAKSPVTIQVSNKY-AKVERLDHAFTFLPDQERDIYLVYLLSCAASKTTDNSRS--IVFTSTWRES---FRIASLLGLLGPLVGGTASPLNGAMQQDKRQNALFEFRLGKTNILVATDLASRGLDIPDVDLVINYDVPKRPSWSDSAKAYIHRVGRTARAGRPGRAVTLVTPYSASRLKAIEAALGERVPQLPWP 385
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Cavefish
Match: ddx47 (DEAD-box helicase 47 [Source:NCBI gene;Acc:103034543]) HSP 1 Score: 287.345 bits (734), Expect = 6.464e-92 Identity = 157/356 (44.10%), Postives = 229/356 (64.33%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQS--LLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIY 1112
F++LGV L E E++GW +PT+IQ + IP+ L+ DV+ LAETGSGKTGAFA+PI+Q L P+ L+LTPT ELA QI +F LG G+K +VGG + Q +L + K H+V+ TPGR++ H+ N K N + LRFLV+DEADR+L+ DF +++ I++ +P+ R T LFSATMT K++KL+ +K+P++ VS K+ TV L + +F+ K + L++ +E ++ ++F T + + + LL L I+ L M++ +R +L+ F + +VL+ATDVASRGLDIP+V VINF +P SKDY+HRVGRTARAGRSG +I+ T Y
Sbjct: 30 FKELGVTEVLCEACEQLGWKQPTKIQIEAIPVALEGRDVIGLAETGSGKTGAFALPILQTLLSHPQRLHTLVLTPTRELAFQIAEQFEALGSSIGVKTAVVVGGIDMMSQAMVL-AKKPHIVIATPGRLIDHLENTKGFNLRALRFLVMDEADRILNMDFESEVDKILKVIPRERHTFLFSATMTKKVQKLQRAALKDPVKCAVSTKYATVDKL----------QQYYIFIPAKYKDCYLVSILNELAGNSFMIFCGTCNNAQRVALLLRNLGITAIPLHGQMSQNKRLGSLNKFKAKSRSVLLATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQY 374
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Cavefish
Match: ddx49 (DEAD-box helicase 49 [Source:NCBI gene;Acc:103043246]) HSP 1 Score: 250.751 bits (639), Expect = 8.484e-78 Identity = 153/395 (38.73%), Postives = 223/395 (56.46%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGG-EFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSD---DFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPL----RAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSIDVPRNEFEEIQDNV 1211
F LG+ L ++ +++G PT +Q+ +P +L D + A+TGSGKT AF +P++QKL + P F L+LTPT ELA QI +F LG+ GL+ IVGG + V +L S K H+VV TPGR+ HI + N K ++FL+LDEADR+L DF DL I+ +P RQT LFSAT+T+ L++L+++ + P ++EV + + D ++ L+ K+Q DE+ +V++FT T K+ +IL +L E L S M + +R L F S +L+ATDVA+RGLDIP V +VIN P K Y+HRVGRTARAGR+G++I+L T Y + IE+ + +K V E +I V
Sbjct: 4 FAALGLSDWLIQQCKQMGITRPTPVQQSCVPAILAGRDCMGCAKTGSGKTAAFVLPVLQKLAEDPYGIFCLVLTPTRELAYQIAEQFRALGKPLGLRDCIIVGGMDMVAQGLEL--SKKPHIVVATPGRLADHIRSSDTFNMKRIKFLILDEADRLLEQGCTDFTKDLEVILSVVPAKRQTLLFSATLTDTLQELKTIAMNEPFFWENKSEV--RTVDELDQRYILTPEKVKDAYLVHLIQKIQ------DEHDDWSVMIFTNTCKNCQILTMMLREFKFPAISLHSMMKQRQRFANLAKFKSNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHLVNAIEEQIQTKLKEYPVEEKEVLKILTQV 388
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Cavefish
Match: eif4a3 (eukaryotic translation initiation factor 4A3 [Source:NCBI gene;Acc:103037591]) HSP 1 Score: 206.453 bits (524), Expect = 1.482e-61 Identity = 114/349 (32.66%), Postives = 197/349 (56.45%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISL 1100
F+ +G+ +L I G+ +P+ IQ++ I ++K DV+A +++G+GKT F + ++Q L + + ALIL PT ELA QI+ + LG+ ++ +GG V + + L + HVV GTPGRV I ++ L + ++ LVLDEAD ML+ F + + LP Q L SAT+ +++ ++ + + +P+R V R T++ + Q + ++ WK +L + D + ++F TK+ L + E + +V+ + DM + ER++ + F SG VL++TDV +RGLD+P V L+IN+ +P + + Y+HR+GR+ R GR G+AI+
Sbjct: 35 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ-HVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE-------WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINF 375
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Cavefish
Match: ddx54 (DEAD-box helicase 54 [Source:NCBI gene;Acc:103046998]) HSP 1 Score: 211.075 bits (536), Expect = 5.187e-60 Identity = 138/360 (38.33%), Postives = 199/360 (55.28%), Query Frame = 3
Query: 33 KMFGGNKFEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNF---ALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKL-LNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISL 1100
K GG F+ +G+ + + + K G+ PT IQRK IP++L DVVA+A TGSGKT AF +P+ ++L P+ ALILTPT ELA+Q +LG+ GLK I+GG+ ++DQ L N +++GTPGR L+HI ++ L + ++V DEADR+ F + L II LP+ RQT LFSAT+ L + P+ + + L R DD+ L L L++++ ++ +VF TK + L +LL I A + S + + R+ + F K VL+ TDVA+RG+DIP + VIN+ P +K +LHRVGR ARAGRSG A SL
Sbjct: 75 KKSGG--FQSMGLSYPVYKGVMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPMFERL-KAPQAQTGARALILTPTRELALQTMKFTKELGKFTGLKTALILGGDSMDDQFAALHEN-PDIIIGTPGR-LMHIVMEMNLKLNNVEYVVFDEADRLFEMGFADQLQEIIRRLPETRQTLLFSATLPKLLVDFARAGLTEPVLMRLDVDTKLSDQLKLAFFHLRLDDKPALLLHL-LRNVVKPQEQ-----TVVFVSTKHHVEYLNQLLTAEGIECAYIYSALDQTARKINIGRFVHRKAMVLLVTDVAARGIDIPMLDNVINYNFPSKAKLFLHRVGRVARAGRSGTAFSL 423
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Cavefish
Match: eif4a3 (eukaryotic translation initiation factor 4A3 [Source:NCBI gene;Acc:103037591]) HSP 1 Score: 201.83 bits (512), Expect = 5.447e-60 Identity = 112/341 (32.84%), Postives = 192/341 (56.30%), Query Frame = 3
Query: 78 NLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISL 1100
+L I G+ +P+ IQ++ I ++K DV+A +++G+GKT F + ++Q L + + ALIL PT ELA QI+ + LG+ ++ +GG V + + L + HVV GTPGRV I ++ L + ++ LVLDEAD ML+ F + + LP Q L SAT+ +++ ++ + + +P+R V R T++ + Q + ++ WK +L + D + ++F TK+ L + E + +V+ + DM + ER++ + F SG VL++TDV +RGLD+P V L+IN+ +P + + Y+HR+GR+ R GR G+AI+
Sbjct: 29 DLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ-HVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE-------WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINF 361
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000216.1 (pep scaffold:Pmarinus_7.0:GL476721:117971:126978:-1 gene:ENSPMAG00000000186.1 transcript:ENSPMAT00000000216.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 286.96 bits (733), Expect = 3.699e-93 Identity = 163/379 (43.01%), Postives = 238/379 (62.80%), Query Frame = 3
Query: 66 GVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQS--LLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSIDVPRNEFE 1193
GV L E E++GW +PT+IQ + IP+ L+ D++ LAETGSGKTGAFA+PI+Q L D P+ FAL+LTPT ELA QI +F LG G+K +VGG + Q+ L + K HV++ TPGR++ H+ N K N + L++LV+DEADR+L+ DF ++ I++ +PK R+T LFSATMT K++KL+ +K P++ VS K+QTV+ L + +F+ K + L+ +E ++ I+F T +T+ + LL L + L M++ +R +L+ F ++L+ATDVASRGLDIP+V +VINF +P SKDY+HRVGRTARAGRSG +I+ + Y IE +G + + P NE E
Sbjct: 1 GVTEVLCEACEQLGWKQPTKIQVEAIPVALQGKDIIGLAETGSGKTGAFALPILQALLDAPQRLFALVLTPTRELAFQISEQFEALGSSIGIKSAVVVGGIDMMSQS-LALAKKPHVIIATPGRLVDHLENTKGFNIRALKYLVMDEADRILNMDFETEVDKILKVIPKERKTYLFSATMTKKVQKLQRAALKEPVKCSVSTKYQTVEKL----------QQYYVFIPAKFKDSYLVYILNELAGNSFIIFCSTCNNTQRIALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKGKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVSQYDVELFQRIEHLIGKKLPAF--PTNEEE 366
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Sea Lamprey
Match: ddx49 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:ZFIN;Acc:ZDB-GENE-031030-3]) HSP 1 Score: 251.136 bits (640), Expect = 9.489e-79 Identity = 151/381 (39.63%), Postives = 226/381 (59.32%), Query Frame = 3
Query: 45 GNKFEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRML---SDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVAS----RGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMK 1163
N F++LG+D L ++ +++G ++PT +Q IP +L+ D + A+TGSGKT AF +PI+QKL + P F L+L PT ELA QI +F +G+ GLK IVGG Q + L + K HVV+ TPGR+ H+ + + K ++FLV+DEADR+L + DF DL I+ +LP RQT LFSAT+T+ L++L ++ + NP E S++ Q+ + D + +LV +Q + + D+ ++IVFT T K+ ++L +L + L S M + ER +L F S +L+ATDVAS RGLDIP V +V+N P K Y+HRVGRTARAGR+G+AI++ T Y + IE+ + +K
Sbjct: 4 ANLFKRLGLDDWLMQQCKQMGISKPTPVQENCIPPILRGQDCMGCAQTGSGKTAAFVLPILQKLSEDPFGIFCLVLAPTRELAYQIAEQFRVMGKPLGLKDSVIVGGMDSVRQAQEL-ARKPHVVIATPGRLADHLRSSNTFSLKKIQFLVMDEADRLLEQGATDFTKDLQVIL-ALPAKRQTLLFSATLTDTLQELRNLALTNPFFWE-SKEPVRTVEELDQRYILVADKVKDAYLVHIIQKIQDAHDD---WSIIVFTNTCKNCQVLNMMLRHFNFPSVALHSMMRQTERFASLSKFKSSMFKILIATDVASSFWARGLDIPTVQVVLNHNTPSLPKTYIHRVGRTARAGRNGVAITIVTQYDIHLVQAIEETINTKLK 378
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Sea Lamprey
Match: DDX54 (DEAD-box helicase 54 [Source:HGNC Symbol;Acc:HGNC:20084]) HSP 1 Score: 214.157 bits (544), Expect = 2.969e-65 Identity = 133/364 (36.54%), Postives = 203/364 (55.77%), Query Frame = 3
Query: 27 NLKMFGGNKFEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHN--FALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNP--LRAEVSRKHXXXXXXXXXXXXFRCD--DERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISL 1100
N K F+ +G+ + + + G+ PT IQRK IP++L+ DVVA+A TGSGKT AF +P+ ++L + AL+L+PT ELA+Q +LG+ GLK I+GG+ +EDQ L N +++GTPGR++ + + L + + ++V DEADR+ F LT II LP RQT LFSAT+ +L + + +P +R +V K Q KL F C D++ L+ L++++ ++ +VF TK + L L+ + +S A + S + + ER+ + F K +L+ TDVA+RG+D P + VIN+ P K ++HRVGR ARAGRSG A SL
Sbjct: 26 NCKKKKSGGFQSMGLSYPVFKGVMGKGYKVPTPIQRKCIPVILEGRDVVAMARTGSGKTAAFLVPMFERLHARSAQAGARALVLSPTRELALQTSKFTKELGKHTGLKTALILGGDRMEDQFAALHENP-DIIIGTPGRLMHVVVEMNLKLQAMEYVVFDEADRLFEMGFAEQLTEIIRRLPDSRQTLLFSATLPKQLVEFARAGLSDPVLIRLDVDSK-----LSDQLKLAFMCSRADDKPCVLLHLLRTVVKPHEQT-----VVFVATKHHVEYLRELVSQAGMSCAYIYSALDQTERKINVGKFVHKKTMLLIVTDVAARGID-PMLDNVINYNFPGKPKLFIHRVGRVARAGRSGTAYSL 377
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Sea Lamprey
Match: ddx6 (DEAD (Asp-Glu-Ala-Asp) box helicase 6 [Source:ZFIN;Acc:ZDB-GENE-070912-83]) HSP 1 Score: 201.06 bits (510), Expect = 2.132e-59 Identity = 127/376 (33.78%), Postives = 206/376 (54.79%), Query Frame = 3
Query: 45 GNKFEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEE-DGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSI 1169
GN+FE + L I + GW +P+ IQ + IP+ L D++A A+ G+GK+GA+ IP++++L K + AL + PT ELA+Q ++L + G+KV+ GG + D L HV++ TPGR+L INK L ++ +VLDEAD++LS DFV L II ++P+ RQ L+SAT ++K + ++ P E++ + Q + + ++V L +L + NQS I+F + + ++L + + +L S + + M + R F G+ LV +D+ +RG+DI V +VINF P++++ YLHR+GR+ R G GLAI+L T +L IE+ LG +K I
Sbjct: 98 GNEFEDYCLKRELLMGIFEKGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDMKKPYIQALTIVPTRELALQTSQICIELSKHMGGVKVMATTGGTNLRDDILRLDET-VHVIIATPGRILDLINKGLAKVDAVQMIVLDEADKLLSQDFVQMLDDIIRAMPRNRQILLYSATFPLSVQKFMNRHLQKPY--EINLMEELTLKGITQFYAYVNERQKV----HCLNTLFSKLQINQS---IIFCNSTQRVELLAKKITQLGYSCFYIHAKMKQEHRNRVFHDFRRGECRNLVCSDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLITYEDRFNLKGIEEQLGTEIKPI 463
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Sea Lamprey
Match: ddx23 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:ZFIN;Acc:ZDB-GENE-030131-6215]) HSP 1 Score: 204.527 bits (519), Expect = 8.020e-59 Identity = 126/390 (32.31%), Postives = 201/390 (51.54%), Query Frame = 3
Query: 78 NLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPI---------IQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLP--------------------------KMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFL--VWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLAT---IYTFVDL 1127
++ E IEK G+ +PT IQR+ IP+ L+ D++ +AETGSGKT AF IP+ I ++ D + +A+IL PT ELA QI+ E +K G+ G++ V ++GG EDQ L+ C +V+ TPGR++ + + L ++VLDEADRM+ F D+ I+E +P K RQT +F+ATM +E+L ++ P + ++RV + K + LL +I+F KK +L + L ++ + L + +R+ AL + +G +LVATDVA RG+DI +V +V+N+ + ++ +DY HR+GRT RAG+SG++++ T F DL
Sbjct: 330 HIREVIEKCGYKDPTPIQRQAIPIGLQNRDIIGIAETGSGKTAAFLIPLLVWITTLPKIDRIEDTDQGPYAVILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMG-CKIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQRILEHMPVSNQKPDTDDAEDPDKMTANFESGRHKYRQTVMFTATMPAAVERLARSYLRRPAVVYIG----------SVGKPIERVEQRVFIMGESEKRKKLLELLSRGFEPPIIIFVNQKKGCDVLAKSLEKMGFNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIHDVSMVLNYDMAKNIEDYTHRIGRTGRAGKSGVSVTFLTKEDAAVFYDL 708
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Yeast
Match: RRP3 (Protein involved in rRNA processing; required for maturation of the 35S primary transcript of pre-rRNA and for cleavage leading to mature 18S rRNA; homologous to eIF-4a, which is a DEAD box RNA-dependent ATPase with helicase activity [Source:SGD;Acc:S000001107]) HSP 1 Score: 266.544 bits (680), Expect = 1.826e-84 Identity = 159/388 (40.98%), Postives = 242/388 (62.37%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLP-KMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSIDVPRNEFEEIQDNV 1211
F +L + L + + + +++PT IQ K IP L+ +D++ LA+TGSGKT AFAIPI+ +L+ + +A IL PT ELA QIK F LG G++ IVGG + DQ + L K H+++ TPGR++ H+ N K + + L+FLV+DEADR+L +F L I++ +P + R T LFSATMT+K++KL+ + NP++ VS K+QTV TL Q ++ + +L++ L + + +I+FT TK + + L L L+ S L D+ + +R +LD F +GK ++LVATDVA+RGLDIP+V +V+N+ +P SK Y+HRVGRTARAGRSG +ISL + Y ++ IE+ LG + V +N ++D+V
Sbjct: 83 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDL-MRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNT-YLIYLLNEFIGKT-------MIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSV 461
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Yeast
Match: DBP8 (ATPase, putative RNA helicase of the DEAD-box family; component of 90S preribosome complex involved in production of 18S rRNA and assembly of 40S small ribosomal subunit; ATPase activity stimulated by association with Esf2p [Source:SGD;Acc:S000001212]) HSP 1 Score: 224.942 bits (572), Expect = 3.345e-69 Identity = 141/360 (39.17%), Postives = 203/360 (56.39%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI----NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPK--MRQTCLFSATMTNKLEKLESVCV---KNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLAT 1106
F+ LG+ L+E + + +PT IQ+ IP +L+ D + A+TGSGKT AFA P++ K + P F ++LTPT ELA+QI +F LG ++V IVGGE + Q L+ K H ++ TPGR+ HI + + ++LVLDEAD +L+ F + L I +LP RQT LF+AT+T++++ L++ V K PL A V + K+ + E V L LL T +E ++ I+F +IL R L +L++ VA L S M + ER N+L F + +L+ATDVASRGLDIP V LV+N+ +P ++HR GRTARAGR G AIS T
Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTKWSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQ-RKPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDKRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVKEAY--LYQLL-TCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVT 359
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Yeast
Match: FAL1 (Nucleolar protein required for maturation of 18S rRNA; member of the eIF4A subfamily of DEAD-box ATP-dependent RNA helicases; 18S rRNA biogenesis defect of the null mutant is functionally complemented by human EIF4A3 [Source:SGD;Acc:S000002428]) HSP 1 Score: 205.682 bits (522), Expect = 2.639e-62 Identity = 123/365 (33.70%), Postives = 196/365 (53.70%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSD--DFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEK 1142
FE + + +L I G+ P+ IQ + I ++ DV+A A++G+GKT F I ++Q + + K ALIL+PT ELA QI LG+ + I GG+ ++D K ++ + C V GTPGRVL I K++L + ++ LVLDEAD +LS+ F + I LPK Q + SATM + ++ + +P++ V R + ++ + D E WK +L + D + ++F TKK L + L + + +V + DM + ER ++ F +G VL++TDV +RG+D+ V LVIN+ +PE ++Y+HR+GR+ R GR G+AI+ T L IEK
Sbjct: 25 FESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDE--ISLEGIKQYVVNVDKEE-----WKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Yeast
Match: DRS1 (Nucleolar DEAD-box protein required for ribosome assembly and function; including synthesis of 60S ribosomal subunits; constituent of 66S pre-ribosomal particles [Source:SGD;Acc:S000003931]) HSP 1 Score: 212.616 bits (540), Expect = 6.204e-62 Identity = 129/338 (38.17%), Postives = 202/338 (59.76%), Query Frame = 3
Query: 102 IGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKH---NFALILTPTHELAVQIKNEFMKLGE-EDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISL 1100
+G+ +P+ IQ IP+ L D++A A TGSGKT AF IPII++L KP ++L PT ELA+Q+ + ++ G+ VGG + Q ++LKS + +V+ TPGR + HI N N ++ LV+DEADRML + F ++L I+ LP RQ LFSATM +K++ L S+ +K P+R + + LTQ+ + R D L++ L L+ + + + ++VF K+ L ++G L +SV L +T+ +R ++++ F + +V VL+ TD+ASRGLDIP + +VIN+ +P+S + YLHRVGRTARAGR G +++
Sbjct: 249 LGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKS-RPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKR---IVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTF 582
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Yeast
Match: DBP3 (RNA-Dependent ATPase, member of DExD/H-box family; involved in cleavage of site A3 within the ITS1 spacer during rRNA processing; not essential for growth, but deletion causes severe slow-growth phenotype [Source:SGD;Acc:S000003046]) HSP 1 Score: 205.682 bits (522), Expect = 5.787e-61 Identity = 132/358 (36.87%), Postives = 203/358 (56.70%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLF-DKPKHNF-ALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAII-ESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXX----FRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLAT 1106
F+ L +D ++ +I K + +PT IQ P +L DVV +AETGSGKT AF +P I L D+ K L+++PT ELA QI + + L ++ G++ + GG ++Q LK K VVV TPGR+L + + ++ + +LVLDEADRML F D+ II E+ RQT +F+AT ++ +L S + NP++ + Q +++ R + ++L L+ K S ++ V++F KK+ + R L +VA + D+++ +R AL+ F SGK +L+ATDVA+RGLDIPNV VIN P + +DY+HR+GRT RAG++G A +L T
Sbjct: 116 FDYLSLDSSIQAEISK--FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLK--KSQVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHS-----GPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFT 464
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Nematostella
Match: EDO33593 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SRU4]) HSP 1 Score: 289.271 bits (739), Expect = 1.704e-93 Identity = 158/356 (44.38%), Postives = 232/356 (65.17%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQS--LLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIY 1112
F+ LGV L E +++GW P++IQR+ IP+ L+ DV+ LAETGSGKTGAFA+PI+Q L D P+ FALILTPT ELA QI + LG G+K IVGG + Q L+ + K H+++ TPGR++ H+ N K + +TL++LV+DEADR+L+ DF ++ +++ +PK R+T LFSATMT K++KL+ ++ P++ EV+ K+QTV+ L + LF+ K + L+ +E ++ +VF T + + + +L L + L M++ +R AL+ F S ++LVATDVASRGLDIP+V +VINF +P SKDY+HRVGRTARAGRSG +++ T Y
Sbjct: 16 FKSLGVVDALCEACKQLGWKTPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILQALLDNPQRLFALILTPTRELAFQISEQCEALGSGIGVKCAVIVGGIDMMSQA-LMLAKKPHIIIATPGRLIDHLENTKGFSLRTLKYLVMDEADRILNMDFEKEVDKLLKVIPKERRTFLFSATMTKKVQKLQRASLQAPVKVEVATKYQTVEKL----------QQSYLFIPSKFKDCYLVYVLNELAGNSFMVFCGTCNNVQRVTLMLRNLGLDAVPLHGQMSQSKRLGALNKFKSKSRSILVATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRSVTFVTQY 360
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Nematostella
Match: EDO43011 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RZV2]) HSP 1 Score: 280.411 bits (716), Expect = 3.794e-90 Identity = 164/359 (45.68%), Postives = 221/359 (61.56%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQ-----SLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIY 1112
F LG++ L + +G +PTEIQ +P +L+ D + A+TGSGKT AFA+PI+QKL D P FA++LTPT ELA QI ++F LG GLK IVGG + Q L +NK HVV+ TPGR+ HI + LN K ++FLVLDEADR+L F +DL I +++P+ RQT LFSAT+T+ + +L+ + P EV TV L D+R L ++ LL +D+NQS VIVFT T K+ ++L + +L ++ L S +++ ER AL F SG + +LVATDVASRGLDIP V LV+N +P KDY+HRVGRTARAGR G+AIS+ T Y
Sbjct: 9 FAGLGLNKWLVSQCVAMGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQKLCDDPYGIFAVVLTPTRELAFQIADQFKVLGRPIGLKEAVIVGGLDMMKQALSL-ANKPHVVIATPGRLADHIKSTDTLNLKKIQFLVLDEADRLLDPSFGDDLKVIFDAVPEKRQTLLFSATLTDTMGELQKMSGSQPFSYEVQSDIATVAEL----------DQRYLLTPAHVRDCYLVHLLRENDDNQS--VIVFTHTCKNCQVLVSMFHKLGLTCVGLHSLLSQGERLAALARFKSGTIKILVATDVASRGLDIPQVELVVNSNIPADPKDYIHRVGRTARAGRGGMAISMVTQY 354
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Nematostella
Match: EDO43602 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RYA5]) HSP 1 Score: 209.534 bits (532), Expect = 3.198e-60 Identity = 131/403 (32.51%), Postives = 215/403 (53.35%), Query Frame = 3
Query: 24 FNLKMFGGN------KFEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPI---------IQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLP------------------------KMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLV---WKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLAT 1106
FN+ GG K+++ + ++ E ++K+G+ +PT IQR+ IP+ L+ D++ +AETGSGKT AFAIP+ I++ D + +ALIL PT ELA QI+ E +K G G++ V+++GG EDQ L+ +V+ TPGR++ + + L ++V+DEADRM+ F ++ I+E LP K RQT +F+ATM ++E+L ++ P + + V+ + E+ ++LV K + LL +++ +I+F KK +L + L ++ L + +R+ AL S G +LVATDVA RG+DI +V VIN+ + ++ +DY HR+GRT RAG++G+A+S T
Sbjct: 336 FNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFGRPLGIRTVSVIGGLSREDQGFQLRLG-VEIVIATPGRLIDVLENRYLVLNRCSYIVMDEADRMIDMGFEPEVQKILEHLPVSNVKPDSEDSEDPEHLLTHMGKDKYRQTVMFTATMPPQVERLAKNYLRRPAVVYIGSVGKPVERV-----------EQRVYLVNEQQKRKKLLELLNKDLEPPIIIFVNQKKGADVLAKSLEKMGFRATTLHGGRNQEQREFALSSLKGGSKDILVATDVAGRGIDIKDVSHVINYDMAKTIEDYTHRIGRTGRAGKTGIAVSFLT 726
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Nematostella
Match: EDO48460 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RIU5]) HSP 1 Score: 201.445 bits (511), Expect = 3.709e-60 Identity = 113/349 (32.38%), Postives = 198/349 (56.73%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISL 1100
F+ + + +L I G+ +P+ IQ++ I +LK DV+A A++G+GKT F+I ++Q + + + AL+L+PT ELA QI+ + LG+ ++ +GG + + + L + H+V GTPGRV I ++ L ++++ LVLDEAD ML+ F + + LP Q L SAT+ +++ ++ S + +P+R V R T++ + Q + ++ WK +L + D + ++F TK+ L + E + +VA + DM + ER+ + F +G+ VL++TDV +RGLD+ V LVIN+ +P + + Y+HR+GR+ R GR G+AI+
Sbjct: 36 FDAMKLREDLLRGIYAYGFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQLREPQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQ-HIVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREE-------WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVASMHGDMPQKEREAIMKDFRAGQSRVLISTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF 376
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Nematostella
Match: EDO39940 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S8H2]) HSP 1 Score: 201.445 bits (511), Expect = 7.377e-60 Identity = 131/376 (34.84%), Postives = 205/376 (54.52%), Query Frame = 3
Query: 45 GNKFEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNF-ALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSI 1169
GN+FE + L I + G+++P+ IQ + IP+ L D++A A+ G+GKT A+ +P++++ D K+ AL+L PT ELA+Q ++LG+ G +V+ GG ++D L NK HV+V TPGRVL + KKL + + LV+DEAD++LS DF L II+ LP+ RQ LFSAT + + ++ P E++ + Q F + ++V L Q L Q + I+F + + ++L R + EL S + + M++ R F G LV +D+ +RG+DI +V +VINF P++S+ YLHR+GR+ R G G+AI+L T DL IE +L +K I
Sbjct: 46 GNEFEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLERT-DTTKNCIQALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTSLKDDILRL-YNKVHVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHLPENRQILLFSATFPISVRDFKEKHLRKPY--EINLMDELTLHGVTQYYAFVEEKQKVHCLNTLFQKL-------QINQSIIFCNSVQRVELLARKILELGFSCFYIHARMSQSHRNRVFHDFRQGHCRNLVCSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGVAINLITYDDRFDLYKIENELDTEIKPI 410
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Medaka
Match: ddx47 (DEAD-box helicase 47 [Source:NCBI gene;Acc:101159675]) HSP 1 Score: 283.108 bits (723), Expect = 4.276e-90 Identity = 155/356 (43.54%), Postives = 228/356 (64.04%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQS--LLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIY 1112
F+ LGV L E +++GW PT+IQ + IP+ L+ DV+ LAETGSGKTGAFA+PI+Q L P+ L+LTPT ELA QI +F LG G+K IVGG + Q+ L+ + K H+V+ TPGR++ H+ N K + + L+FLV+DEADR+L+ DF ++ I++ +P+ R+T LFSATMT K++KL+ +K+P++ VS K+ TV L + +F+ K + L++ +E ++ ++F T + + + +L L I+ L M++ +R AL+ F S +VL+ATDVASRGLDIP+V VIN+ +P SKDY+HRVGRTARAGRSG +I+ T Y
Sbjct: 41 FKDLGVTDVLCEACDQLGWKSPTKIQVEAIPVALQGKDVIGLAETGSGKTGAFALPILQSLLASPQRLHTLVLTPTRELAFQISEQFEALGSSIGVKCAVIVGGIDMMSQS-LVLAKKPHIVIATPGRLIDHMENTKGFSLRALKFLVMDEADRILNMDFETEVDKILKVIPRERRTFLFSATMTKKVQKLQRAALKDPVKCAVSTKYSTVDKL----------QQYYVFIPAKYKDCYLVSILNELAGNSFMIFCSTCNNAQRVALMLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATDVASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQY 385
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Medaka
Match: ddx49 (DEAD-box helicase 49 [Source:NCBI gene;Acc:101169189]) HSP 1 Score: 247.669 bits (631), Expect = 1.137e-76 Identity = 149/390 (38.21%), Postives = 224/390 (57.44%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSD---DFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSIDVPRNEFEEIQDNV 1211
F LG+ L ++ +++G ++PT +Q +P +L+ D + A+TGSGKT AF +P++QKL + P F L+LTPT ELA QI +F LG+ GLK +VGG + Q L S + HVVV TPGR+ H+ + + + ++FL+LDEADR+L DF DL I+ +LP RQT LFSAT+T+ L++L+S+ + P E S Q+ + + + +LV +Q+ +D++ ++I+FT T K+ +IL +L E + L S M + +R L F + +L+ATDVA+RGLDIP V +VIN P K Y+HRVGRTARAGR+G++I+L T Y + IE+ + V E +I V
Sbjct: 4 FHSLGLSDWLVKQCKQLGIDKPTPVQENCVPAILEGRDCLGCAKTGSGKTAAFVLPVLQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIVVGGMDMVTQALEL-SKQPHVVVATPGRLADHVRSSNTFSMRKIKFLILDEADRLLEQGCTDFTKDLEEILGTLPAKRQTLLFSATLTDTLQELKSIAMNKPFFWE-STSETRTVEELDQRYILTPEKVKDAYLVHLIQTF---TDKHDDWSIIIFTNTCKNCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKASVYKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHLVHSIEEQTKTKLTEYPVEEKEVHKILTQV 388
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Medaka
Match: eif4a3 (eukaryotic translation initiation factor 4A3 [Source:NCBI gene;Acc:101159793]) HSP 1 Score: 207.223 bits (526), Expect = 7.566e-62 Identity = 115/349 (32.95%), Postives = 197/349 (56.45%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISL 1100
F+ +G+ +L I G+ +P+ IQ++ I ++K DV+A +++G+GKT F I ++Q L + + ALIL PT ELA QI+ + LG+ ++ +GG V + + L + HVV GTPGRV I ++ L + ++ LVLDEAD ML+ F + + LP Q L SAT+ +++ ++ + + +P+R V R T++ + Q + ++ WK +L + D + ++F TK+ L + E + +V+ + DM + ER++ + F SG VL++TDV +RGLD+P V L+IN+ +P + + Y+HR+GR+ R GR G+AI+
Sbjct: 35 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCISVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ-HVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE-------WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINF 375
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Medaka
Match: ddx54 (DEAD-box helicase 54 [Source:NCBI gene;Acc:101162145]) HSP 1 Score: 213.001 bits (541), Expect = 1.180e-60 Identity = 137/360 (38.06%), Postives = 196/360 (54.44%), Query Frame = 3
Query: 33 KMFGGNKFEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNF---ALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKL-LNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISL 1100
K GG F+ +G+ + + + K G+ PT IQRK IP++L DVVA+A TGSGKT AF +P+ +KL P+ + ALI++PT ELA+Q +LG+ GLK I+GG+ +EDQ L N +++GTPGR L+H+ K++ L ++ ++V DEADR+ F L II+ LP RQT LFSAT+ L + + P+ + + + R DD+ + L LL + Q V VF TK + L LL I A + S + + R+ + F K VL+ TDVA+RG+DIP + +VIN+ P K +LHRVGR RAGRSG SL
Sbjct: 74 KKSGG--FQSMGLSYPVYKGVMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPMFEKL-KAPQASAGARALIMSPTRELALQTMKFTKELGKFAGLKTALILGGDRMEDQFAALHEN-PDIIIGTPGR-LMHVVKEMNLKLHSVEYVVFDEADRLFEMGFAEQLQEIIQRLPDTRQTLLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLSDQIKLSFFHLRVDDKPAMLL-----HLLKNVAKPQEQTV-VFVATKHHVEYLRELLSSEGIECAYIYSALDQTARKINIGKFVHRKAMVLIVTDVAARGIDIPMLDIVINYNFPSKPKLFLHRVGRVGRAGRSGTTYSL 422
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Medaka
Match: ddx27 (DEAD-box helicase 27 [Source:NCBI gene;Acc:101158015]) HSP 1 Score: 204.527 bits (519), Expect = 3.662e-58 Identity = 131/351 (37.32%), Postives = 202/351 (57.55%), Query Frame = 3
Query: 72 DGNLSEKIEK----IGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHN---FALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHI-NKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISL 1100
D NLS I K +G+ +PT IQ+ +P+ L D+ A A TG+GKT AF +P++++L KP+ + L+L PT EL +Q+ + +L + + VGG ++ Q L++ V++ TPGR++ H+ N + L+LDEADRML + F + II RQT LFSATMT +++ L +V +K P+R V+ L Q+ + R E V + +LL + ++ +V++FT+T+K L+ LLG + + V L ++++ +R L F ++ +LVATDVA+RGLDI V VINF +P + K Y+HRVGRTARAGRSG ++SL
Sbjct: 177 DMNLSRPILKAITALGFKQPTPIQKACVPVSLLGRDLCACAATGTGKTAAFMLPVLERLIYKPRTSQVTRVLVLVPTRELGIQVHSVARQLAQFTSITTCLAVGGLDLKSQEAALRAGP-DVLIATPGRLIDHLHNTPNFELSHIEILILDEADRMLDEYFEEQMKEIIRLCSYNRQTMLFSATMTEEVKDLAAVSLKQPVRIFVNSNTDVAPFLRQEFIRIRPHREGDREAV--VAALLTRTFQD---HVMLFTQTRKQAHRLHILLGLMGLKVGELHGELSQNQRLENLRRFKDDQIDILVATDVAARGLDIDGVKTVINFTMPSTVKHYVHRVGRTARAGRSGRSVSL 521
BLAST of ATP-dependent rRNA helicase RRP3 vs. Planmine SMEST
Match: SMESG000067540.1 (SMESG000067540.1) HSP 1 Score: 647.892 bits (1670), Expect = 0.000e+0 Identity = 362/434 (83.41%), Postives = 369/434 (85.02%), Query Frame = 3
Query: 36 MFGGNKFEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSIDVPRNEFEEIQDNVXXXXXXXXXXXXXDEMPIREGNTXXXXXXXXXXXXXXPHLDN 1337
MFGGNKFEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEF+EDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIE+LPK + C+ + + DENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDL ITMKSIDVPRNEFEEIQ+NVLSLLESTKKKLKEDEMPIREGNTKRKHGEKKEKHSKKPHLDN
Sbjct: 1 MFGGNKFEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFIEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIEALPK-----------------MRQTCL--------------------------------------FSATMTNKDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLRITMKSIDVPRNEFEEIQNNVLSLLESTKKKLKEDEMPIREGNTKRKHGEKKEKHSKKPHLDN 379
BLAST of ATP-dependent rRNA helicase RRP3 vs. Planmine SMEST
Match: SMESG000060310.1 (SMESG000060310.1) HSP 1 Score: 647.892 bits (1670), Expect = 0.000e+0 Identity = 362/434 (83.41%), Postives = 369/434 (85.02%), Query Frame = 3
Query: 36 MFGGNKFEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSIDVPRNEFEEIQDNVXXXXXXXXXXXXXDEMPIREGNTXXXXXXXXXXXXXXPHLDN 1337
MFGGNKFEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEF+EDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIE+LPK + C+ + + DENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDL ITMKSIDVPRNEFEEIQ+NVLSLLESTKKKLKEDEMPIREGNTKRKHGEKKEKHSKKPHLDN
Sbjct: 1 MFGGNKFEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFIEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIEALPK-----------------MRQTCL--------------------------------------FSATMTNKDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLRITMKSIDVPRNEFEEIQNNVLSLLESTKKKLKEDEMPIREGNTKRKHGEKKEKHSKKPHLDN 379
BLAST of ATP-dependent rRNA helicase RRP3 vs. Planmine SMEST
Match: SMESG000067540.1 (SMESG000067540.1) HSP 1 Score: 569.696 bits (1467), Expect = 0.000e+0 Identity = 324/396 (81.82%), Postives = 331/396 (83.59%), Query Frame = 3
Query: 150 MLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERVLFLVWKLQSLLNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGITMKSIDVPRNEFEEIQDNVXXXXXXXXXXXXXDEMPIREGNTXXXXXXXXXXXXXXPHLDN 1337
MLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEF+EDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIE+LPK + C+ + + DENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDL ITMKSIDVPRNEFEEIQ+NVLSLLESTKKKLKEDEMPIREGNTKRKHGEKKEKHSKKPHLDN
Sbjct: 1 MLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFIEDQTKLLKSNKCHVVVGTPGRVLLHINKKLLNFKTLRFLVLDEADRMLSDDFVNDLTAIIEALPK-----------------MRQTCL--------------------------------------FSATMTNKDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLRITMKSIDVPRNEFEEIQNNVLSLLESTKKKLKEDEMPIREGNTKRKHGEKKEKHSKKPHLDN 341
BLAST of ATP-dependent rRNA helicase RRP3 vs. Planmine SMEST
Match: SMESG000051946.1 (SMESG000051946.1) HSP 1 Score: 286.574 bits (732), Expect = 5.467e-92 Identity = 157/376 (41.76%), Postives = 235/376 (62.50%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKHNFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQ-TKLLKSNKCHVVVGTPGRVLLHI-NKKLLN---FKTLRFLVLDEADRMLSDDFVNDLTAIIESLPKMRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCD-DERVLFLVWKLQSL-----------------LNTSDENQSSNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIY 1112
F++LGV+ L E IE+I W PTEIQ+K IP L+ D++ LA+TGSGKTGAF IPI+Q+L PK FAL+ TPT ELA+QI+ EF LG+ G+K T++GG + Q T++L NK H+++ TPGR L H+ K N K L+FLV+DEADRMLS F DL I+ LP+ R+T LFSAT T+K+ KL+ + +P++ V K+ ++ ++ + C +++ LVW L+ L L++ + + ++IVF +T+ + +L L +L ++ + SDM++ +R + KV ++VATDVA+RG+DIPNV +VI + +PES+K Y HR GRTARAG+ G++I++ Y
Sbjct: 3 FKELGVNDTLCEAIERIKWKIPTEIQKKAIPPALEGKDIIGLAKTGSGKTGAFTIPILQELMKDPKPFFALVFTPTRELAIQIQTEFNGLGKGIGVKCATLIGGLCEKTQATQIL--NKPHIIIATPGRFLKHVATTKGFNEQTLKNLKFLVMDEADRMLSSQFDRDLNKILYILPRTRRTFLFSATNTDKVSKLQRASLIDPVKVSVDEKY--AESSELKEFMLLCPYEQQSAHLVWLLKQLTCKSAKPTEFDIAAFNYLDSDGKKATKSIIVFVQTRMMSNLLAYFLQKLGLNAQPINSDMSQEQRTATIHKMKMRKVDIMVATDVAARGIDIPNVDVVIQYDIPESAKTYTHRAGRTARAGKRGVSITMVNQY 374
BLAST of ATP-dependent rRNA helicase RRP3 vs. Planmine SMEST
Match: SMESG000030761.1 (SMESG000030761.1) HSP 1 Score: 246.514 bits (628), Expect = 2.410e-76 Identity = 161/405 (39.75%), Postives = 236/405 (58.27%), Query Frame = 3
Query: 54 FEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAETGSGKTGAFAIPIIQKLFDKPKH-NFALILTPTHELAVQIKNEFMKLGEEDGLKVVTIVGGEFVEDQTKLLKSNKCHVVVGTPGRV--LLHINKKLLN-FKTLRFLVLDEADRMLSDDFVNDLTAIIESLPK-----------------MRQTCLFSATMTNKLEKLESVCVKNPLRAEVSRKHXXXXXXXXXXXXFRCDDERV--LFLVWKL-----------QSLLNTS-DENQS--SNVIVFTETKKDTKILYRLLGELDISVAMLQSDMTRVERQNALDSFSSGKVAVLVATDVASRGLDIPNVGLVINFQVPESSKDYLHRVGRTARAGRSGLAISLATIYTFVDLIFIEKDLGIT 1157
F++LG+ +L + + GWNEPT+IQ+ IP+ L D++ LAETG GKTGAF +PI+ ++ K FALILTPT ELA QI+ +F+ +G E GLK I+GGE + Q L + H+VV TPGRV L+ +K+ + +T+ LV+DEADRML +F +D+ AI + LPK +RQT LFSAT ++ +EK+ + P + V K Q + L Q L+ + ERV LF + + Q++ T+ E+Q S+ IVF T K TK L L ++ S L S +++ +R+ A+D F +G+ +L+ATD+ASRGLD+ +V LV+N+ +P++ Y HRVGRTARAGRSG A++ I +EK LG+
Sbjct: 3 FKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQY-VERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLA 406 The following BLAST results are available for this feature:
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30026996 ID=SMED30026996|Name=ATP-dependent rRNA helicase RRP3|organism=Schmidtea mediterranea sexual|type=transcript|length=1374bpback to top protein sequence of SMED30026996-orf-1 >SMED30026996-orf-1 ID=SMED30026996-orf-1|Name=SMED30026996-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=435bp MFGGNKFEKLGVDGNLSEKIEKIGWNEPTEIQRKVIPLMLKENDVVALAEback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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