SMED30026949

Overview
NameSMED30026949
Smed IDSMED30026949
Length (bp)1361
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30026949 (SMED30026949) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30026949 (SMED30026949) in cells (dots) of each of the 12 neoblast clusters.

 

back to top


 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30026949 (SMED30026949) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30026949 (SMED30026949) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top


 

Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020




SMED30026949

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 14

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30026949SMESG000047804.1 SMESG000038532.1 SMESG000038520.1 SMESG000036102.1 SMESG000036067.1 SMESG000036060.1 Contig7058newmark_estsPMID:23079596
Forsthoefel et al., 2012
FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30026949SMESG000047804.1 SMESG000038532.1 SMESG000038520.1 SMESG000036102.1 SMESG000036067.1 SMESG000036060.1 Contig7058uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012
FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
head regionSMED30026949SMESG000047804.1 SMESG000038528.1 SMESG000038520.1 SMESG000036102.1 SmedASXL_012879SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
pharynxSMED30026949SMESG000047804.1 SMESG000038532.1 SMESG000038520.1 SMESG000036112.1 SMESG000036060.1 dd_Smed_v4_4251_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30026949SMESG000047804.1 SMESG000038532.1 SMESG000038520.1 SMESG000036112.1 SMESG000036060.1 dd_Smed_v4_4251_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30026949SMESG000047804.1 SMESG000038532.1 SMESG000038520.1 SMESG000036112.1 SMESG000036060.1 dd_Smed_v4_4251_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30026949SMESG000047804.1 SMESG000038532.1 SMESG000038520.1 SMESG000036112.1 SMESG000036060.1 dd_Smed_v4_4251_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30026949SMESG000047804.1 SMESG000038532.1 SMESG000038520.1 SMESG000036112.1 SMESG000036060.1 dd_Smed_v4_4251_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult colorimetric in situ hybridization evidence
parenchymal cellSMED30026949SMESG000047804.1 SMESG000038532.1 SMESG000038520.1 SMESG000036112.1 SMESG000036060.1 dd_Smed_v4_4251_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30026949SMESG000054716.1 SMESG000038532.1 SMESG000038528.1 SMESG000036060.1 Contig19411uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30026949SMESG000054716.1 SMESG000038532.1 SMESG000038528.1 SMESG000036060.1 Contig19411newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30026949SMESG000054716.1 SMESG000047804.1 SMESG000038519.1 SMESG000036102.1 Contig10395newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30026949SMESG000054716.1 SMESG000047804.1 SMESG000038519.1 SMESG000036102.1 Contig10395uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
epidermisSMED30026949SMESG000047804.1 SMESG000038532.1 SMESG000038520.1 SMESG000036112.1 SMESG000036060.1 dd_Smed_v4_4251_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30026949 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.005332:41160..42284 -3422
Homology
BLAST of SMED30026949 vs. Planmine SMEST
Match: SMESG000038520.1 (SMESG000038520.1)

HSP 1 Score: 478.404 bits (1230), Expect = 2.016e-166
Identity = 268/291 (92.10%), Postives = 274/291 (94.16%), Query Frame = 3
Query:  483 ENLKQISASNSKTIDLGFSSINSPNEINVWNCHKQSTNDFTDVNGKPITYDHNQHTHSPRQYTSLSEAARIXXXXXXXXGKNFLLSKKSAPIYQHFPNDTNSSSNWQNEFDKADLKRNSNELTYQDFDQIGSNAKIKSNIDRDKYSEGGAGSRQNSRSHRDNYFSTNSADIYGTMPKWNDDYQSRNRDLHSELDRHXXXXXXXXXXXXDLRIRSNKSERKNGRLQEELDDCKAKLKLSXXXXXXXXXXXXIFILEMENSKNSNEKLRSECKILQNETNQYLAQINQLQSAL 1355
            +N +QISASNSKTIDLGFSSINS NEINVWN HK STN FTD+NGKPITYD NQHTHSPRQYTSLSEAARISHHS+SSS KNFLLSKKSAPIYQHF NDTNSSSNWQNEFDKADLKRNSNEL YQDFDQIG NAK+KSN DRDKYSEGGAGS QNSRSH DNYFSTNSADIYGTMPKWNDDYQSRNRDLHSELDRHERGIE FGEEIEDLRIRSNKSERKNGRLQEELDDCK KLKLSQERN QLENENEIFILEMENS NSNEKLRSECKILQNETNQYLAQINQLQSA+
Sbjct:   50 KNRRQISASNSKTIDLGFSSINSLNEINVWNSHKHSTNHFTDLNGKPITYDQNQHTHSPRQYTSLSEAARISHHSNSSSEKNFLLSKKSAPIYQHFLNDTNSSSNWQNEFDKADLKRNSNELNYQDFDQIGINAKLKSNADRDKYSEGGAGSSQNSRSHGDNYFSTNSADIYGTMPKWNDDYQSRNRDLHSELDRHERGIEIFGEEIEDLRIRSNKSERKNGRLQEELDDCKEKLKLSQERNSQLENENEIFILEMENSNNSNEKLRSECKILQNETNQYLAQINQLQSAI 340          

HSP 2 Score: 86.2705 bits (212), Expect = 6.002e-18
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 3
Query: 1179 AKLKLSXXXXXXXXXXXXIFILEMENSKNSNEKLRSECKILQNETNQYLAQINQLQSALKE 1361
            AKLKLSQERNLQLENENEIFIL+M+NS NSNEKL+SECKILQNETNQYLAQINQLQSALKE
Sbjct:  376 AKLKLSQERNLQLENENEIFILQMKNSNNSNEKLKSECKILQNETNQYLAQINQLQSALKE 436          
BLAST of SMED30026949 vs. Planmine SMEST
Match: SMESG000047804.1 (SMESG000047804.1)

HSP 1 Score: 484.567 bits (1246), Expect = 1.526e-163
Identity = 272/292 (93.15%), Postives = 278/292 (95.21%), Query Frame = 3
Query:  486 NLKQISASNSKTIDLGFSSINSPNEINVWNCHKQSTNDFTDVNGKPITYDHNQHTHSPRQYTSLSEAARIXXXXXXXXGKNFLLSKKSAPIYQHFPNDTNSSSNWQNEFDKADLKRNSNELTYQDFDQIGSNAKIKSNIDRDKYSEGGAGSRQNSRSHRDNYFSTNSADIYGTMPKWNDDYQSRNRDLHSELDRHXXXXXXXXXXXXDLRIRSNKSERKNGRLQEELDDCKAKLKLSXXXXXXXXXXXXIFILEMENSKNSNEKLRSECKILQNETNQYLAQINQLQSALKE 1361
            NL QISASNSKT    FSSINSPNEINVWN HK S N FTD+NGKPITYDHNQHTHSPRQYTSLSEAARISHHS+SSSGKNFLLSKKSAPIYQHFPNDTNSSSNWQNEFDKADLKRNSNELTYQDFDQIGSNAKIKSNIDRDKYSEGGAGSRQNSR H DNYFSTNSADIYGTMP+WNDDYQSRNRDLHSELDRHERGIE FGEEIEDLRIRSNKSERKNGRLQEELDD KAKLKLSQERNLQLENENEIFILEMENS NSNEKL+SECKILQN+TNQYLA+INQLQSALKE
Sbjct:   51 NLIQISASNSKTTVPSFSSINSPNEINVWNSHKHSINYFTDLNGKPITYDHNQHTHSPRQYTSLSEAARISHHSNSSSGKNFLLSKKSAPIYQHFPNDTNSSSNWQNEFDKADLKRNSNELTYQDFDQIGSNAKIKSNIDRDKYSEGGAGSRQNSRFHGDNYFSTNSADIYGTMPEWNDDYQSRNRDLHSELDRHERGIEIFGEEIEDLRIRSNKSERKNGRLQEELDDWKAKLKLSQERNLQLENENEIFILEMENSNNSNEKLKSECKILQNQTNQYLARINQLQSALKE 342          
BLAST of SMED30026949 vs. Planmine SMEST
Match: SMESG000038528.1 (SMESG000038528.1)

HSP 1 Score: 438.343 bits (1126), Expect = 2.033e-145
Identity = 208/216 (96.30%), Postives = 209/216 (96.76%), Query Frame = 3
Query:   39 QISATNRRTRVPSLSLRNRLTESNASNSHNQSTTDLTNINFMPTRYNQNQQYTPLPEIQKNLLNPTFSPKDQKFRLSIDRNNSATWQNSDINSDRNPGRGTRQKQIGKDRAIIKSADHHSLNRNNESWLKESEKINGKSQRDFELLSFENLKQISASNSKTIDLGFSSINSPNEINVWNCHKQSTNDFTDVNGKPITYDHNQHTHSPRQYTSLSEA 686
            QISATNRRTRVPSLSLRNRLTESNASNSHNQSTTDLTNINFMPTRYNQNQQYTPLPEIQKNLLNPTFSPKDQKFRLSIDRNNSATWQNSDINSDRNPGRGTRQKQIGKDRAIIKSADHHSLNRNNESWLKESEKINGKSQRDFELLSFENLKQISASNSKTIDLGFSSIN PNEINVWNCHKQSTNDFTDVNGKPITYD NQHTHSP QY+   E 
Sbjct:   44 QISATNRRTRVPSLSLRNRLTESNASNSHNQSTTDLTNINFMPTRYNQNQQYTPLPEIQKNLLNPTFSPKDQKFRLSIDRNNSATWQNSDINSDRNPGRGTRQKQIGKDRAIIKSADHHSLNRNNESWLKESEKINGKSQRDFELLSFENLKQISASNSKTIDLGFSSINFPNEINVWNCHKQSTNDFTDVNGKPITYDQNQHTHSPSQYSPTPET 259          
BLAST of SMED30026949 vs. Planmine SMEST
Match: SMESG000036102.1 (SMESG000036102.1)

HSP 1 Score: 342.813 bits (878), Expect = 1.240e-107
Identity = 211/292 (72.26%), Postives = 221/292 (75.68%), Query Frame = 3
Query:  486 NLKQISASNSKTIDLGFSSINSPNEINVWNCHKQSTNDFTDVNGKPITYDHNQHTHSPRQYTSLSEAARIXXXXXXXXGKNFLLSKKSAPIYQHFPNDTNSSSNWQNEFDKADLKRNSNELTYQDFDQIGSNAKIKSNIDRDKYSEGGAGSRQNSRSHRDNYFSTNSADIYGTMPKWNDDYQSRNRDLHSELDRHXXXXXXXXXXXXDLRIRSNKSERKNGRLQEELDDCKAKLKLSXXXXXXXXXXXXIFILEMENSKNSNEKLRSECKILQNETNQYLAQINQLQSALKE 1361
            NL+QISASNSKTIDLGFSSINSPNEINVWN HK STN FTD+N KPI Y  NQHTHSPRQY+ + EAARI                          + +NSSS                          G NAK+KSN DRDKYS+GGA SRQNSR H DNYFSTNSADIYGTMP+WN+DYQSRN D HSELDRHERGIE FGEEIEDLRIRSNKSERKNGRLQEELDD KAKLKLSQERNLQLENENEIFILEMENSKNSNEKLRSECKILQNETNQYLAQINQLQSALKE
Sbjct:   40 NLRQISASNSKTIDLGFSSINSPNEINVWNSHKYSTNHFTDLNVKPIAYYQNQHTHSPRQYSPIPEAARI-------------------------SHHSNSSS--------------------------GRNAKLKSNADRDKYSDGGARSRQNSRFHGDNYFSTNSADIYGTMPEWNNDYQSRNSDWHSELDRHERGIEIFGEEIEDLRIRSNKSERKNGRLQEELDDWKAKLKLSQERNLQLENENEIFILEMENSKNSNEKLRSECKILQNETNQYLAQINQLQSALKE 280          
BLAST of SMED30026949 vs. Planmine SMEST
Match: SMESG000036102.1 (SMESG000036102.1)

HSP 1 Score: 342.813 bits (878), Expect = 5.376e-107
Identity = 211/292 (72.26%), Postives = 221/292 (75.68%), Query Frame = 3
Query:  486 NLKQISASNSKTIDLGFSSINSPNEINVWNCHKQSTNDFTDVNGKPITYDHNQHTHSPRQYTSLSEAARIXXXXXXXXGKNFLLSKKSAPIYQHFPNDTNSSSNWQNEFDKADLKRNSNELTYQDFDQIGSNAKIKSNIDRDKYSEGGAGSRQNSRSHRDNYFSTNSADIYGTMPKWNDDYQSRNRDLHSELDRHXXXXXXXXXXXXDLRIRSNKSERKNGRLQEELDDCKAKLKLSXXXXXXXXXXXXIFILEMENSKNSNEKLRSECKILQNETNQYLAQINQLQSALKE 1361
            NL+QISASNSKTIDLGFSSINSPNEINVWN HK STN FTD+N KPI Y  NQHTHSPRQY+ + EAARI                          + +NSSS                          G NAK+KSN DRDKYS+GGA SRQNSR H DNYFSTNSADIYGTMP+WN+DYQSRN D HSELDRHERGIE FGEEIEDLRIRSNKSERKNGRLQEELDD KAKLKLSQERNLQLENENEIFILEMENSKNSNEKLRSECKILQNETNQYLAQINQLQSALKE
Sbjct:   40 NLRQISASNSKTIDLGFSSINSPNEINVWNSHKYSTNHFTDLNVKPIAYYQNQHTHSPRQYSPIPEAARI-------------------------SHHSNSSS--------------------------GRNAKLKSNADRDKYSDGGARSRQNSRFHGDNYFSTNSADIYGTMPEWNNDYQSRNSDWHSELDRHERGIEIFGEEIEDLRIRSNKSERKNGRLQEELDDWKAKLKLSQERNLQLENENEIFILEMENSKNSNEKLRSECKILQNETNQYLAQINQLQSALKE 280          
The following BLAST results are available for this feature:
BLAST of SMED30026949 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026949 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026949 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026949 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026949 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026949 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026949 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026949 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026949 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026949 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026949 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026949 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026949 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026949 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000038520.12.016e-16692.10SMESG000038520.1[more]
SMESG000047804.11.526e-16393.15SMESG000047804.1[more]
SMESG000038528.12.033e-14596.30SMESG000038528.1[more]
SMESG000036102.11.240e-10772.26SMESG000036102.1[more]
SMESG000036102.15.376e-10772.26SMESG000036102.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30026949 ID=SMED30026949|Name=SMED30026949|organism=Schmidtea mediterranea sexual|type=transcript|length=1361bp
CATCAAGATCTTCATCTGCACATAATAGAAACAGAAGACAAATCAGTGCT
ACTAACAGAAGAACTAGAGTTCCTAGCTTGTCATTGAGAAATCGTCTAAC
TGAATCTAATGCAAGCAATTCTCATAATCAGTCCACCACTGATTTAACGA
ATATAAATTTTATGCCAACTAGATATAATCAGAATCAACAATATACACCT
CTACCAGAAATTCAAAAAAATCTTTTGAATCCTACATTTTCGCCAAAAGA
TCAAAAATTCCGTTTATCTATTGACAGAAATAATAGCGCGACTTGGCAAA
ATAGTGATATAAATTCTGATAGGAATCCTGGCCGAGGGACTAGACAGAAG
CAAATCGGCAAAGATCGTGCTATAATCAAATCAGCTGATCATCATTCATT
GAACCGAAATAACGAATCTTGGTTGAAGGAATCAGAAAAAATAAATGGAA
AATCGCAGCGAGATTTTGAACTTTTAAGTTTTGAAAATTTAAAACAAATC
AGTGCTTCTAATAGCAAAACTATAGATCTTGGCTTCTCATCGATAAATTC
TCCAAATGAAATTAATGTATGGAATTGTCATAAACAGTCCACCAATGATT
TCACTGATGTAAATGGTAAGCCAATCACATATGATCATAATCAACACACT
CATTCTCCAAGACAATATACATCTCTATCAGAAGCTGCACGCATTTCTCA
TCATTCCAGCTCATCAAGTGGAAAAAATTTTCTTTTGTCAAAAAAATCTG
CTCCAATTTATCAGCACTTTCCTAATGACACAAATAGCAGCTCGAATTGG
CAAAATGAATTTGATAAAGCCGATTTAAAAAGGAACTCAAATGAATTGAC
CTATCAAGACTTTGATCAGATCGGAAGTAATGCAAAGATTAAATCCAATA
TTGATAGGGATAAATATTCTGAAGGAGGGGCTGGATCGAGGCAAAACAGC
AGATCCCATCGAGACAATTACTTTTCTACCAACTCGGCTGATATTTATGG
CACAATGCCCAAGTGGAATGATGATTATCAATCACGGAACAGAGATTTGC
ATTCAGAATTAGATAGGCACGAGAGGGGGATAGAAAGATTTGGAGAAGAA
ATAGAGGATTTGAGAATAAGATCGAATAAATCAGAAAGAAAAAATGGAAG
ATTGCAGGAAGAGCTTGATGATTGCAAAGCAAAATTAAAACTTTCACAGG
AGAGAAATTTACAATTGGAGAATGAAAATGAGATATTTATATTGGAAATG
GAGAATTCAAAAAATTCTAATGAGAAACTGAGATCGGAATGCAAAATCTT
ACAGAATGAAACTAATCAATATTTGGCACAAATTAACCAATTGCAATCAG
CATTGAAGGAA
back to top

protein sequence of SMED30026949-orf-1

>SMED30026949-orf-1 ID=SMED30026949-orf-1|Name=SMED30026949-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=453bp
SRSSSAHNRNRRQISATNRRTRVPSLSLRNRLTESNASNSHNQSTTDLTN
INFMPTRYNQNQQYTPLPEIQKNLLNPTFSPKDQKFRLSIDRNNSATWQN
SDINSDRNPGRGTRQKQIGKDRAIIKSADHHSLNRNNESWLKESEKINGK
SQRDFELLSFENLKQISASNSKTIDLGFSSINSPNEINVWNCHKQSTNDF
TDVNGKPITYDHNQHTHSPRQYTSLSEAARISHHSSSSSGKNFLLSKKSA
PIYQHFPNDTNSSSNWQNEFDKADLKRNSNELTYQDFDQIGSNAKIKSNI
DRDKYSEGGAGSRQNSRSHRDNYFSTNSADIYGTMPKWNDDYQSRNRDLH
SELDRHERGIERFGEEIEDLRIRSNKSERKNGRLQEELDDCKAKLKLSQE
RNLQLENENEIFILEMENSKNSNEKLRSECKILQNETNQYLAQINQLQSA
LKE
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000070intestinal phagocyte
PLANA:0000099neuron
PLANA:0000418head
PLANA:0002032epidermal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 366..407
NoneNo IPR availableCOILSCoilCoilcoord: 415..452
NoneNo IPR availableCOILSCoilCoilcoord: 338..358
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..115