stimulated by retinoic acid gene 6 protein homolog
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30026898 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Homology
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Xenopus
Match: stra6l.1 (stra6-like, gene 1 [Source:NCBI gene;Acc:100145324]) HSP 1 Score: 50.447 bits (119), Expect = 8.630e-6 Identity = 76/289 (26.30%), Postives = 128/289 (44.29%), Query Frame = 2 Query: 1136 SLFNYCFMFSLACAGIIQISHIACSLKNYQYHFKRLXXXXXXXXXXX-XXXXXXXXXXXFLHYSGYQSVHIVMGFFIQ--VFTILSVTYCLIFVFII---FILKQNSFIGYFLLNASXXXXXXXXXXXXEKVIVYCFF------SSNKPGESMINNSRAFAIFMHVCXXXXXXXXXXXXXXXXXXXVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPIL-----------------RCAVHQFKQISGIPNISRTRWHLAYTLVKNPNLKYLRVNKS 1915 S + FS+ A I +S+I L Y+ H KRL+ N + +PY + YSG+Q +++ G+ I V IL + + FV+ I LK +G F+L + ++ L + V+ FF ++K +NN +AF F + F++N+++G + +L+ VIL R+D + + E DT + + G++++ + NP+L C+ + SG +RTRW L YTL+KNP L R K Sbjct: 272 SALEGVWFFSIFLASAITVSYIFHILVCYRKHMKRLWIGNRSFLPVKFQVPSPYESVAAIARYSGWQVAYLLWGYIIMHIVQIILGLAFAYAFVYPIKHGEALKLFKGLGIFILTIGIVIALMML----QVVLARLFFLQQKISCNDKQKPLALNNRKAFHNFNYFFFFYNVIVGLSACLLRLLRSVILGSWLIARIDRSILQRGFESGDTGYTTWIGMIYVDHYHTNPVLVSFCNILLTKRAEKTVRECSSYHGFSDSGSNIQARTRWLLYYTLLKNPRLILQRKMKE 556
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Xenopus
Match: stra6l.1 (stra6-like, gene 1 [Source:NCBI gene;Acc:100145324]) HSP 1 Score: 50.447 bits (119), Expect = 9.370e-6 Identity = 76/289 (26.30%), Postives = 128/289 (44.29%), Query Frame = 2 Query: 1136 SLFNYCFMFSLACAGIIQISHIACSLKNYQYHFKRLXXXXXXXXXXX-XXXXXXXXXXXFLHYSGYQSVHIVMGFFIQ--VFTILSVTYCLIFVFII---FILKQNSFIGYFLLNASXXXXXXXXXXXXEKVIVYCFF------SSNKPGESMINNSRAFAIFMHVCXXXXXXXXXXXXXXXXXXXVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPIL-----------------RCAVHQFKQISGIPNISRTRWHLAYTLVKNPNLKYLRVNKS 1915 S + FS+ A I +S+I L Y+ H KRL+ N + +PY + YSG+Q +++ G+ I V IL + + FV+ I LK +G F+L + ++ L + V+ FF ++K +NN +AF F + F++N+++G + +L+ VIL R+D + + E DT + + G++++ + NP+L C+ + SG +RTRW L YTL+KNP L R K Sbjct: 304 SALEGVWFFSIFLASAITVSYIFHILVCYRKHMKRLWIGNRSFLPVKFQVPSPYESVAAIARYSGWQVAYLLWGYIIMHIVQIILGLAFAYAFVYPIKHGEALKLFKGLGIFILTIGIVIALMML----QVVLARLFFLQQKISCNDKQKPLALNNRKAFHNFNYFFFFYNVIVGLSACLLRLLRSVILGSWLIARIDRSILQRGFESGDTGYTTWIGMIYVDHYHTNPVLVSFCNILLTKRAEKTVRECSSYHGFSDSGSNIQARTRWLLYYTLLKNPRLILQRKMKE 588
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. TrEMBL
Match: A0A5N5JJ64 (Uncharacterized protein OS=Pangasianodon hypophthalmus OX=310915 GN=PHYPO_G00168150 PE=4 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 4.071e-6 Identity = 69/284 (24.30%), Postives = 135/284 (47.54%), Query Frame = 2 Query: 1145 NYCFMFSLACAGIIQISHIACSLKNYQYHFKRLXXXXXXXXXXXXXXXXXXXXXXFLHYSGYQSVHIVMGFFIQVFTILSVTYCLIFVFIIF-ILKQNSFIGY--FLLNASXXXXXXXXXXXXEKVIVYCFFSSNKPGES------MINNSRAFAIFMHVCXXXXXXXXXXXXXXXXXXXVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPILRCAVH-------------QFKQISGIP---NISRTRWHLAYTLVKNPNLKYLRVNKSSK 1921 Y + S ACA + + HI+ L Y+ H + L K + +P ++ L Y GYQ V G+ I + V L+FV+++ ++++ F+ + ++ + FI+ + L++++ + FF +K + +NN +AF F + F+ N++LG ++ +LI + ++ R++ P+ E+ DT++ + G++ + NP+L C H ++ +++ P + RTRW L YTL++NP L LR + K Sbjct: 329 TYTWYISAACATLTSVIHISQVLVYYRKHMESLRAGEKKYLPKTYKLDPVYGVVGLLKYPGYQIAFSVWGYLIMHIAMFVVG--LVFVYLVVSPIREHGFLHWLKWVGMSLPNFFILLAVMGLQRMLSHLFFLQDKTSPTDEDKPLALNNRKAFHNFNYYLFFCNVILGVMSCFLRLIKSAAVGLMLLSRIERTIMPEGFEKQDTSYCMWVGMIMADHYHTNPVLVCFCHLLLKHTSESVQDGEYSRLNSEPISKDQVRTRWLLVYTLLRNPKLILLRKKRKQK 610
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Cavefish
Match: stra6l (STRA6-like [Source:ZFIN;Acc:ZDB-GENE-070410-116]) HSP 1 Score: 49.6766 bits (117), Expect = 9.188e-6 Identity = 67/280 (23.93%), Postives = 127/280 (45.36%), Query Frame = 2 Query: 1163 SLACAGIIQISHIACSLKNYQYHFKRLXXXXXXXXXXXXXXXXXXXXXXFL-HYSGYQSVHIVMGFFIQVFTILSVTYCLIFVFIIFILKQNSFIGYFLLNASXXXX---XXXXXXXXEKVIVYCFF------SSNKPGESMINNSRAFAIFMHVCXXXXXXXXXXXXXXXXXXXVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPILRCAVH-----------------QFKQISGIPNISRTR--WHLAYTLVKNPNLKYLRVNKS 1915 + A + + I+H+ +L Y+ H KRL+ N + + ++ + L Y G Q + G+ I I + +IFV+++ + + +G +L+N I+ L +L+ ++V FF NK +NN +AF F + F++N++LG + I +L + +L R++ PK E +D ++ + G++ + +P++ C H + SG P R R WH++YTL++NP L LR ++ Sbjct: 318 TTALSTLASIAHVGHTLMCYRKHMKRLWAGNKSFLPNNDYVPHSAVSVAALAKYPGCQIAFTIWGYLI--VHIALFVFGMIFVYLVVVPIRCVGLGKWLINLLIFLSNFLIVIALLMLQILLVQVFFLQEKIKPENKEKPLALNNRKAFHNFNYFFFFYNVILGLGSCILRLFGSAFVGLLLVSRINRTIMPKGFEMLDKGYQTWIGMIMADHYHSSPVMVCFCHLLLKRTLERQKSTKAYSRLNSTSGSPAEVRARAHWHVSYTLLRNPKLIMLRKHRK 595
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Planmine SMEST
Match: SMESG000056366.1 (SMESG000056366.1) HSP 1 Score: 933.324 bits (2411), Expect = 0.000e+0 Identity = 547/550 (99.45%), Postives = 549/550 (99.82%), Query Frame = 2 Query: 290 MFVVIFIKQKKFLRAKSCRTVGLSIPFNQMRFHSGSVMFVLAYILLGGHIINLFTDKHFNNIPAGNFTFTVYFVMKLLISYLFIYMYYPLFAGIANRGKSFKIIGLCFCCLRLTSEISNVAFLQLDYVHHFYNSIFMIGYSLTNVIITTVIAAFLISLIFYPSNEEFRDRVLNEIYVQDXXXXXXXXXXXXXXXXXXXXFEGIIERKFSFPTEIFVGIFFGLYACVYLSTRCLTSLLDWRDLGFRRLNQSVPLNKGFWRIFYNYLNRNDVQQNVPIFIKYSVSLFNYCFMFSLACAGIIQISHIACSLKNYQYHFKRLXXXXXXXXXXXXXXXXXXXXXXFLHYSGYQSVHIVMGFFIQVFTILSVTYCLIFVFIIFILKQNSFIGYFLLNASXXXXXXXXXXXXEKVIVYCFFSSNKPGESMINNSRAFAIFMHVCXXXXXXXXXXXXXXXXXXXVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPILRCAVHQFKQISGIPNISRTRWHLAYTLVKNPNLKYLRVNKSSKIRMTFV 1939 MFVVIFIKQKKFLRAKSCRTVGLSIPFNQMRFHSGSVMFVLAYILLGGHIINLFTDKHFNNIPAGNFTFTVYFVMKLLISYLFIYMYYPLFAGIANRGKSFKIIGLCFCCLRLTSEISNVAFLQLDYVHHFYNSIFMI YSLTNVIITTVIAAFLISLIFYPSNEEFRDRVLNEIYVQDLLKKSKPKSKPWYLKLLLKPFEGIIERKFSFPTEIFVGIFFGLYACVYLSTRCLTSLLDWRDLGFRRLNQSVPLNKGFWRIFYNYLNRNDVQQNVPIFIKYSVSLFNYCFMFSLACAGIIQISHIACSLKNYQYHFKRLYKDNSKSIISISSYNPYSLLLNFLHYSGYQSVHIVMGFFIQVFTILSVTYCLIFVFIIF+LKQNSFIGYFLLNASAIGFIIGLLAILEK+IVYCFFSSNKPGESMINNSRAFAIFMHVCFYFNLLLGFLNGIGKLIFGVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPILRCAVHQFKQISGIPNISRTRWHLAYTLVKNPNLKYLRVNKSSKIRMTFV Sbjct: 1 MFVVIFIKQKKFLRAKSCRTVGLSIPFNQMRFHSGSVMFVLAYILLGGHIINLFTDKHFNNIPAGNFTFTVYFVMKLLISYLFIYMYYPLFAGIANRGKSFKIIGLCFCCLRLTSEISNVAFLQLDYVHHFYNSIFMIVYSLTNVIITTVIAAFLISLIFYPSNEEFRDRVLNEIYVQDLLKKSKPKSKPWYLKLLLKPFEGIIERKFSFPTEIFVGIFFGLYACVYLSTRCLTSLLDWRDLGFRRLNQSVPLNKGFWRIFYNYLNRNDVQQNVPIFIKYSVSLFNYCFMFSLACAGIIQISHIACSLKNYQYHFKRLYKDNSKSIISISSYNPYSLLLNFLHYSGYQSVHIVMGFFIQVFTILSVTYCLIFVFIIFVLKQNSFIGYFLLNASAIGFIIGLLAILEKIIVYCFFSSNKPGESMINNSRAFAIFMHVCFYFNLLLGFLNGIGKLIFGVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPILRCAVHQFKQISGIPNISRTRWHLAYTLVKNPNLKYLRVNKSSKIRMTFV 550
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Planmine SMEST
Match: SMESG000031061.1 (SMESG000031061.1) HSP 1 Score: 83.1889 bits (204), Expect = 1.858e-16 Identity = 83/354 (23.45%), Postives = 167/354 (47.18%), Query Frame = 2 Query: 911 FSFPTEIFVGIFFGLYAC--VYLSTRCLTSLLDWR---DLGFRRLNQSVPLNKGFWRIFYNYLNRNDVQ-QNVPIFIKYSVS-LFNYCFMFSLACAGIIQISHIACSLKNYQYHFKRLXXXXXXXXXXXXXXXXXXXXXX-FLHYSGYQSVHIVMGFFIQVFTILSVTYCLIFVFIIFIL-KQNSFIGYFLLNASXXXXXXXXXXXXEKVIVYCFFSSNKPGESMINNSRAFAIFMHVCXXXXXXXXXXXXXXXXXXXVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPILRCAVHQFKQISGIPNIS------------------RTRWHLAYTLVKNPNL 1891 F FP + +G+ GLY +++ + + W+ ++ + L +++ F+ I+ NY + ++ QN ++ +S + L C + ++ A I + L+NY+ HF R+ + + + + P L+ ++ +SGYQ+ + + G + F + + Y LI +F++ + +NS+ L+N + + + I++ +V F K +NN R+F I+ H F+ N ++G N + ++I + F R+D + P++L D+ + AY G ++ +++ NPIL+C H ++ NI R WH+A TL+ NP L Sbjct: 158 FGFPPRLMIGMLVGLYFAYRIFIDNILGLTPIAWKLIAEINNKYLITQTNISRSFYLIWSNYSLYSKMEIQNSFRYLTFSYTHLLISCLLSAIFIAFINSVIQSLLLLRNYRLHFHRITRKGFSTFMDVKRAPPPYSLILGYVRFSGYQAAYTLWGILVVTFFMFIILYLLIGIFLLPLFYVENSWSRKLLINYGPVLVVTIIFNIIQTTVVKYIFVMEKGTLMEVNNRRSFMIYTHCAFFLNAMMGIFNSVKRVIIWIFSGAFCFSRIDFSSLPEYLHGFDSGYMAYVGFVYTEQYHFNPILQCFSHLLMEMKREKNIYVKEDELNLLNNDKRRMRFRNLWHVAVTLINNPQL 511
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Planmine SMEST
Match: SMESG000041900.1 (SMESG000041900.1) HSP 1 Score: 83.1889 bits (204), Expect = 2.527e-16 Identity = 86/354 (24.29%), Postives = 170/354 (48.02%), Query Frame = 2 Query: 911 FSFPTEIFVGIFFGLYAC--VYLSTRCLTSLLDWR---DLGFRRLNQSVPLNKGFWRIFYNYLNRNDVQ-QNVPIFIKYSVS-LFNYCFMFSLACAGIIQISHIACSLKNYQYHFKRLXXXXXXX-XXXXXXXXXXXXXXXFLHYSGYQSVHIVMGFFIQVFTILSVTYCLIFVFIIFIL-KQNSFIGYFLLNASXXXXXXXXXXXXEKVIVYCFFSSNKPGESMINNSRAFAIFMHVCXXXXXXXXXXXXXXXXXXXVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPILRCAVHQFKQISGIPNIS------------------RTRWHLAYTLVKNPNL 1891 F FP + +G+ GLY +++ + + W+ ++ + L +++ F+ I+ NY + ++ QN ++ +S + L C + ++ A I + L+NY+ HF R+ + + + + PYSL+L ++ +SGYQ+ + + G + F + + Y LI +F++ + +NS+ L+N + + + I++ +V F K +NN R+F I+ H F+ N ++G N + ++I + F R+D + P++L D+ + AY G ++ +++ NPIL+C H ++ NI R WH+A TL+ NP L Sbjct: 312 FGFPPRLMIGMLVGLYFAYRIFIDNILGLTPIAWKLIAEINNKYLITQTNISRSFYLIWSNYSLYSKMEIQNSFRYLTFSYTHLLISCLLSAIFIAFINSVIQSLLLLRNYRLHFHRITRKGFSTFMDVKRAPPPYSLILGYVRFSGYQAAYTLWGILVVTFFMFIILYLLIGIFLLPLFYVENSWSRKLLINYGPVLVVTIIFNIIQTTVVKYIFVMEKGTLMEVNNRRSFMIYTHCAFFLNAMMGIFNSVKRVIIWIFSGAFCFSRIDFSSLPEYLHGFDSGYMAYVGFVYTEQYHFNPILQCFSHLLMEMKREKNIYVKEDELNLLNNDKRRMRFRNLWHVAVTLINNPQL 665
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Planmine SMEST
Match: SMESG000041908.1 (SMESG000041908.1) HSP 1 Score: 71.2478 bits (173), Expect = 1.786e-12 Identity = 65/228 (28.51%), Postives = 115/228 (50.44%), Query Frame = 2 Query: 1310 FLHYSGYQSVHIVMGFFIQVFTILSVTYCLIFVFII-FILKQNSFIGYFLLNASXXXXXXXXXXXXEKVIVYCFFSSNKPGESMINNSRAFAIFMHVCXXXXXXXXXXXXXXXXXXXVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPILRC----AVHQFKQISGIP--------------NISRTRWHLAYTLVKNPNLKYLR--VNKSSKIRM 1930 F+ YSGYQ+ +I+ G + +F + + LI V ++ I +NS++ F L + + ++A+ + VIV F + +NN R F I+ H F+ N+++GF N I ++I + V F R+D P +L+R+D+ + +Y G L+ ++ NPI++C V + +P R +W LA TL+ NP L+ R +++ KIR+ Sbjct: 289 FVRYSGYQAAYILWGIIVVIFFMFLFLFFLIGVILLPLIFLENSWMRKFFLRSLPVIVGSIIIAVFQTVIVRLVFVKERGNLMEVNNRRVFTIYAHCAFFLNVMMGFFNSIRRMIMSIFNFVFCFSRIDFNTLPIYLQRLDSGYMSYIGFLYTLQYHQNPIMKCFTDIFVENHNRKKDLPVNYTIDLDHRIEVGRKYRIKWQLALTLINNPQLQSDRKKISEIDKIRI 516 HSP 2 Score: 60.8474 bits (146), Expect = 2.931e-9 Identity = 71/259 (27.41%), Postives = 128/259 (49.42%), Query Frame = 2 Query: 1211 LKNYQYHFKRLXXXXXXXXXXXXXXXX-XXXXXXFLHYSGYQSVHIVMGFFIQVFTILSVTYCLIFVFII-FILKQNSFIGYFLLNASXXXXXXXXXXXXEKVIVYCFFSSNKPGESMINNSRAFAIFMHVCXXXXXXXXXXXXXXXXXXXVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPILRCAV--------------HQFKQISGIPNISRT--RWHLAYTLVKNPNLKYLRVNKSSKIRMT 1933 L+NY+ HF+++ K SII++ L+ + YSGYQ+ +I+ G + +F + + I V ++ I +NS+ L + + + +L I + ++V F + INN RAF I+ H F+ N+++GF I ++I ++ V F R+D P +L D+ + +Y G L+ ++ NPIL+C V ++ K+ S + + SR +W +A+TL+ N L+ R + K M Sbjct: 1165 LRNYRLHFQKISKKGFSSIIALRKAPNCAGLVSGLVRYSGYQAAYILWGIIVVIFFMFLFLFISIGVVLLPLIFLENSWTRKLFLQSLPVIGLSFVLFIGQSLLVRFVFVKERGSLMEINNRRAFMIYAHCAFFLNVMIGFFTSIKRMIIWMLNFVFCFSRIDFNALPVYLHSFDSGYMSYIGFLYTLQYHQNPILKCFVDLLEEKHLVNRNPLNEGKEKSQLESKSRNLKKWQVAFTLINNLQLQVDRKRRIGKFLMN 1423
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Planmine SMEST
Match: SMESG000031041.1 (SMESG000031041.1) HSP 1 Score: 63.929 bits (154), Expect = 2.844e-10 Identity = 59/219 (26.94%), Postives = 107/219 (48.86%), Query Frame = 2 Query: 1310 FLHYSGYQSVHIVMGFFIQVFTILSVTYCLIFVFIIF---ILKQNSFIGYFLLNASXXXXXXXXXXXXEKVIVYCFFSSNKPGESMINNSRAFAIFMHVCXXXXXXXXXXXXXXXXXXXVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPILRC----AVHQFKQISGIPNIS--------------RTRWHLAYTLVKNPNLKYLR 1903 + YSG+Q+ +I+ G I V T+ + + +I I +NS+I +L ++ ++++++ F + INN RAF I+ H F+ N+++GF N I ++I ++ V F R+D P +L+R+D+ + +Y G L+ ++ NPIL+C + K+ I N S + +WH+A TL+ N L+ R Sbjct: 415 LVRYSGFQAAYILWG--ITVVTVFMFLFLFFLIGVILLPLIYLENSWIRKLILQLLPFLIATYIVIAIQRLLIKFVFVKERGSLMEINNRRAFMIYAHCAFFLNVMMGFFNSIKRMIIWMLNFVFCFSRIDFNALPVYLQRLDSGYMSYIGFLYTLQYHQNPILKCFTDMLMENHKKKKSIANNSDMSLDYKNASKRNYKIKWHVALTLINNCQLQTDR 631 The following BLAST results are available for this feature:
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 1
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30026898 ID=SMED30026898|Name=stimulated by retinoic acid gene 6 protein homolog|organism=Schmidtea mediterranea sexual|type=transcript|length=2030bpback to top protein sequence of SMED30026898-orf-1 >SMED30026898-orf-1 ID=SMED30026898-orf-1|Name=SMED30026898-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=610bp MNNTNQYSSNSSKNFEKLCKTLEIFYYFFLETTFPEQSPKVSGLNFSIQLback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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