stimulated by retinoic acid gene 6 protein homolog

Overview
Namestimulated by retinoic acid gene 6 protein homolog
Smed IDSMED30026898
Length (bp)2030
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of stimulated by retinoic acid gene 6 protein homolog (SMED30026898) t-SNE clustered cells

Violin plots show distribution of expression levels for stimulated by retinoic acid gene 6 protein homolog (SMED30026898) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of stimulated by retinoic acid gene 6 protein homolog (SMED30026898) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for stimulated by retinoic acid gene 6 protein homolog (SMED30026898) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30026898

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parenchymaSMED30026898SMESG000056366.1 dd_Smed_v4_40721_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30026898SMESG000056366.1 Contig51460newmark_estsPMID:27612384
Roberts-Galbraith et al., 2016
whole organism asexual adult colorimetric in situ hybridization evidence
parenchymaSMED30026898SMESG000056366.1 Contig51460uc_Smed_v2PMID:27612384
Roberts-Galbraith et al., 2016
whole organism asexual adult colorimetric in situ hybridization evidence
Note: Hover over icons to view figure legend
Homology
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Xenopus
Match: stra6l.1 (stra6-like, gene 1 [Source:NCBI gene;Acc:100145324])

HSP 1 Score: 50.447 bits (119), Expect = 8.630e-6
Identity = 76/289 (26.30%), Postives = 128/289 (44.29%), Query Frame = 2
Query: 1136 SLFNYCFMFSLACAGIIQISHIACSLKNYQYHFKRLXXXXXXXXXXX-XXXXXXXXXXXFLHYSGYQSVHIVMGFFIQ--VFTILSVTYCLIFVFII---FILKQNSFIGYFLLNASXXXXXXXXXXXXEKVIVYCFF------SSNKPGESMINNSRAFAIFMHVCXXXXXXXXXXXXXXXXXXXVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPIL-----------------RCAVHQFKQISGIPNISRTRWHLAYTLVKNPNLKYLRVNKS 1915
            S     + FS+  A  I +S+I   L  Y+ H KRL+  N   +       +PY  +     YSG+Q  +++ G+ I   V  IL + +   FV+ I     LK    +G F+L    +  ++ L    + V+   FF       ++K     +NN +AF  F +  F++N+++G    + +L+  VIL      R+D +   +  E  DT +  + G++++  +  NP+L                  C+ +     SG    +RTRW L YTL+KNP L   R  K 
Sbjct:  272 SALEGVWFFSIFLASAITVSYIFHILVCYRKHMKRLWIGNRSFLPVKFQVPSPYESVAAIARYSGWQVAYLLWGYIIMHIVQIILGLAFAYAFVYPIKHGEALKLFKGLGIFILTIGIVIALMML----QVVLARLFFLQQKISCNDKQKPLALNNRKAFHNFNYFFFFYNVIVGLSACLLRLLRSVILGSWLIARIDRSILQRGFESGDTGYTTWIGMIYVDHYHTNPVLVSFCNILLTKRAEKTVRECSSYHGFSDSGSNIQARTRWLLYYTLLKNPRLILQRKMKE 556          
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Xenopus
Match: stra6l.1 (stra6-like, gene 1 [Source:NCBI gene;Acc:100145324])

HSP 1 Score: 50.447 bits (119), Expect = 9.370e-6
Identity = 76/289 (26.30%), Postives = 128/289 (44.29%), Query Frame = 2
Query: 1136 SLFNYCFMFSLACAGIIQISHIACSLKNYQYHFKRLXXXXXXXXXXX-XXXXXXXXXXXFLHYSGYQSVHIVMGFFIQ--VFTILSVTYCLIFVFII---FILKQNSFIGYFLLNASXXXXXXXXXXXXEKVIVYCFF------SSNKPGESMINNSRAFAIFMHVCXXXXXXXXXXXXXXXXXXXVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPIL-----------------RCAVHQFKQISGIPNISRTRWHLAYTLVKNPNLKYLRVNKS 1915
            S     + FS+  A  I +S+I   L  Y+ H KRL+  N   +       +PY  +     YSG+Q  +++ G+ I   V  IL + +   FV+ I     LK    +G F+L    +  ++ L    + V+   FF       ++K     +NN +AF  F +  F++N+++G    + +L+  VIL      R+D +   +  E  DT +  + G++++  +  NP+L                  C+ +     SG    +RTRW L YTL+KNP L   R  K 
Sbjct:  304 SALEGVWFFSIFLASAITVSYIFHILVCYRKHMKRLWIGNRSFLPVKFQVPSPYESVAAIARYSGWQVAYLLWGYIIMHIVQIILGLAFAYAFVYPIKHGEALKLFKGLGIFILTIGIVIALMML----QVVLARLFFLQQKISCNDKQKPLALNNRKAFHNFNYFFFFYNVIVGLSACLLRLLRSVILGSWLIARIDRSILQRGFESGDTGYTTWIGMIYVDHYHTNPVLVSFCNILLTKRAEKTVRECSSYHGFSDSGSNIQARTRWLLYYTLLKNPRLILQRKMKE 588          
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. TrEMBL
Match: A0A5N5JJ64 (Uncharacterized protein OS=Pangasianodon hypophthalmus OX=310915 GN=PHYPO_G00168150 PE=4 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 4.071e-6
Identity = 69/284 (24.30%), Postives = 135/284 (47.54%), Query Frame = 2
Query: 1145 NYCFMFSLACAGIIQISHIACSLKNYQYHFKRLXXXXXXXXXXXXXXXXXXXXXXFLHYSGYQSVHIVMGFFIQVFTILSVTYCLIFVFIIF-ILKQNSFIGY--FLLNASXXXXXXXXXXXXEKVIVYCFFSSNKPGES------MINNSRAFAIFMHVCXXXXXXXXXXXXXXXXXXXVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPILRCAVH-------------QFKQISGIP---NISRTRWHLAYTLVKNPNLKYLRVNKSSK 1921
             Y +  S ACA +  + HI+  L  Y+ H + L     K +      +P   ++  L Y GYQ    V G+ I    +  V   L+FV+++   ++++ F+ +  ++  +    FI+  +  L++++ + FF  +K   +       +NN +AF  F +  F+ N++LG ++   +LI    + ++   R++    P+  E+ DT++  + G++    +  NP+L C  H             ++ +++  P   +  RTRW L YTL++NP L  LR  +  K
Sbjct:  329 TYTWYISAACATLTSVIHISQVLVYYRKHMESLRAGEKKYLPKTYKLDPVYGVVGLLKYPGYQIAFSVWGYLIMHIAMFVVG--LVFVYLVVSPIREHGFLHWLKWVGMSLPNFFILLAVMGLQRMLSHLFFLQDKTSPTDEDKPLALNNRKAFHNFNYYLFFCNVILGVMSCFLRLIKSAAVGLMLLSRIERTIMPEGFEKQDTSYCMWVGMIMADHYHTNPVLVCFCHLLLKHTSESVQDGEYSRLNSEPISKDQVRTRWLLVYTLLRNPKLILLRKKRKQK 610          
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Cavefish
Match: stra6l (STRA6-like [Source:ZFIN;Acc:ZDB-GENE-070410-116])

HSP 1 Score: 49.6766 bits (117), Expect = 9.188e-6
Identity = 67/280 (23.93%), Postives = 127/280 (45.36%), Query Frame = 2
Query: 1163 SLACAGIIQISHIACSLKNYQYHFKRLXXXXXXXXXXXXXXXXXXXXXXFL-HYSGYQSVHIVMGFFIQVFTILSVTYCLIFVFIIFILKQNSFIGYFLLNASXXXX---XXXXXXXXEKVIVYCFF------SSNKPGESMINNSRAFAIFMHVCXXXXXXXXXXXXXXXXXXXVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPILRCAVH-----------------QFKQISGIPNISRTR--WHLAYTLVKNPNLKYLRVNKS 1915
            + A + +  I+H+  +L  Y+ H KRL+  N   + +       ++ +  L  Y G Q    + G+ I    I    + +IFV+++ +  +   +G +L+N         I+  L +L+ ++V  FF        NK     +NN +AF  F +  F++N++LG  + I +L     + +L   R++    PK  E +D  ++ + G++    +  +P++ C  H                 +    SG P   R R  WH++YTL++NP L  LR ++ 
Sbjct:  318 TTALSTLASIAHVGHTLMCYRKHMKRLWAGNKSFLPNNDYVPHSAVSVAALAKYPGCQIAFTIWGYLI--VHIALFVFGMIFVYLVVVPIRCVGLGKWLINLLIFLSNFLIVIALLMLQILLVQVFFLQEKIKPENKEKPLALNNRKAFHNFNYFFFFYNVILGLGSCILRLFGSAFVGLLLVSRINRTIMPKGFEMLDKGYQTWIGMIMADHYHSSPVMVCFCHLLLKRTLERQKSTKAYSRLNSTSGSPAEVRARAHWHVSYTLLRNPKLIMLRKHRK 595          
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Planmine SMEST
Match: SMESG000056366.1 (SMESG000056366.1)

HSP 1 Score: 933.324 bits (2411), Expect = 0.000e+0
Identity = 547/550 (99.45%), Postives = 549/550 (99.82%), Query Frame = 2
Query:  290 MFVVIFIKQKKFLRAKSCRTVGLSIPFNQMRFHSGSVMFVLAYILLGGHIINLFTDKHFNNIPAGNFTFTVYFVMKLLISYLFIYMYYPLFAGIANRGKSFKIIGLCFCCLRLTSEISNVAFLQLDYVHHFYNSIFMIGYSLTNVIITTVIAAFLISLIFYPSNEEFRDRVLNEIYVQDXXXXXXXXXXXXXXXXXXXXFEGIIERKFSFPTEIFVGIFFGLYACVYLSTRCLTSLLDWRDLGFRRLNQSVPLNKGFWRIFYNYLNRNDVQQNVPIFIKYSVSLFNYCFMFSLACAGIIQISHIACSLKNYQYHFKRLXXXXXXXXXXXXXXXXXXXXXXFLHYSGYQSVHIVMGFFIQVFTILSVTYCLIFVFIIFILKQNSFIGYFLLNASXXXXXXXXXXXXEKVIVYCFFSSNKPGESMINNSRAFAIFMHVCXXXXXXXXXXXXXXXXXXXVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPILRCAVHQFKQISGIPNISRTRWHLAYTLVKNPNLKYLRVNKSSKIRMTFV 1939
            MFVVIFIKQKKFLRAKSCRTVGLSIPFNQMRFHSGSVMFVLAYILLGGHIINLFTDKHFNNIPAGNFTFTVYFVMKLLISYLFIYMYYPLFAGIANRGKSFKIIGLCFCCLRLTSEISNVAFLQLDYVHHFYNSIFMI YSLTNVIITTVIAAFLISLIFYPSNEEFRDRVLNEIYVQDLLKKSKPKSKPWYLKLLLKPFEGIIERKFSFPTEIFVGIFFGLYACVYLSTRCLTSLLDWRDLGFRRLNQSVPLNKGFWRIFYNYLNRNDVQQNVPIFIKYSVSLFNYCFMFSLACAGIIQISHIACSLKNYQYHFKRLYKDNSKSIISISSYNPYSLLLNFLHYSGYQSVHIVMGFFIQVFTILSVTYCLIFVFIIF+LKQNSFIGYFLLNASAIGFIIGLLAILEK+IVYCFFSSNKPGESMINNSRAFAIFMHVCFYFNLLLGFLNGIGKLIFGVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPILRCAVHQFKQISGIPNISRTRWHLAYTLVKNPNLKYLRVNKSSKIRMTFV
Sbjct:    1 MFVVIFIKQKKFLRAKSCRTVGLSIPFNQMRFHSGSVMFVLAYILLGGHIINLFTDKHFNNIPAGNFTFTVYFVMKLLISYLFIYMYYPLFAGIANRGKSFKIIGLCFCCLRLTSEISNVAFLQLDYVHHFYNSIFMIVYSLTNVIITTVIAAFLISLIFYPSNEEFRDRVLNEIYVQDLLKKSKPKSKPWYLKLLLKPFEGIIERKFSFPTEIFVGIFFGLYACVYLSTRCLTSLLDWRDLGFRRLNQSVPLNKGFWRIFYNYLNRNDVQQNVPIFIKYSVSLFNYCFMFSLACAGIIQISHIACSLKNYQYHFKRLYKDNSKSIISISSYNPYSLLLNFLHYSGYQSVHIVMGFFIQVFTILSVTYCLIFVFIIFVLKQNSFIGYFLLNASAIGFIIGLLAILEKIIVYCFFSSNKPGESMINNSRAFAIFMHVCFYFNLLLGFLNGIGKLIFGVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPILRCAVHQFKQISGIPNISRTRWHLAYTLVKNPNLKYLRVNKSSKIRMTFV 550          
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Planmine SMEST
Match: SMESG000031061.1 (SMESG000031061.1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.858e-16
Identity = 83/354 (23.45%), Postives = 167/354 (47.18%), Query Frame = 2
Query:  911 FSFPTEIFVGIFFGLYAC--VYLSTRCLTSLLDWR---DLGFRRLNQSVPLNKGFWRIFYNYLNRNDVQ-QNVPIFIKYSVS-LFNYCFMFSLACAGIIQISHIACSLKNYQYHFKRLXXXXXXXXXXXXXXXXXXXXXX-FLHYSGYQSVHIVMGFFIQVFTILSVTYCLIFVFIIFIL-KQNSFIGYFLLNASXXXXXXXXXXXXEKVIVYCFFSSNKPGESMINNSRAFAIFMHVCXXXXXXXXXXXXXXXXXXXVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPILRCAVHQFKQISGIPNIS------------------RTRWHLAYTLVKNPNL 1891
            F FP  + +G+  GLY    +++      + + W+   ++  + L     +++ F+ I+ NY   + ++ QN   ++ +S + L   C + ++  A I  +      L+NY+ HF R+ +    + + +    P   L+  ++ +SGYQ+ + + G  +  F +  + Y LI +F++ +   +NS+    L+N   +  +  +  I++  +V   F   K     +NN R+F I+ H  F+ N ++G  N + ++I  +      F R+D +  P++L   D+ + AY G ++ +++  NPIL+C  H   ++    NI                   R  WH+A TL+ NP L
Sbjct:  158 FGFPPRLMIGMLVGLYFAYRIFIDNILGLTPIAWKLIAEINNKYLITQTNISRSFYLIWSNYSLYSKMEIQNSFRYLTFSYTHLLISCLLSAIFIAFINSVIQSLLLLRNYRLHFHRITRKGFSTFMDVKRAPPPYSLILGYVRFSGYQAAYTLWGILVVTFFMFIILYLLIGIFLLPLFYVENSWSRKLLINYGPVLVVTIIFNIIQTTVVKYIFVMEKGTLMEVNNRRSFMIYTHCAFFLNAMMGIFNSVKRVIIWIFSGAFCFSRIDFSSLPEYLHGFDSGYMAYVGFVYTEQYHFNPILQCFSHLLMEMKREKNIYVKEDELNLLNNDKRRMRFRNLWHVAVTLINNPQL 511          
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Planmine SMEST
Match: SMESG000041900.1 (SMESG000041900.1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.527e-16
Identity = 86/354 (24.29%), Postives = 170/354 (48.02%), Query Frame = 2
Query:  911 FSFPTEIFVGIFFGLYAC--VYLSTRCLTSLLDWR---DLGFRRLNQSVPLNKGFWRIFYNYLNRNDVQ-QNVPIFIKYSVS-LFNYCFMFSLACAGIIQISHIACSLKNYQYHFKRLXXXXXXX-XXXXXXXXXXXXXXXFLHYSGYQSVHIVMGFFIQVFTILSVTYCLIFVFIIFIL-KQNSFIGYFLLNASXXXXXXXXXXXXEKVIVYCFFSSNKPGESMINNSRAFAIFMHVCXXXXXXXXXXXXXXXXXXXVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPILRCAVHQFKQISGIPNIS------------------RTRWHLAYTLVKNPNL 1891
            F FP  + +G+  GLY    +++      + + W+   ++  + L     +++ F+ I+ NY   + ++ QN   ++ +S + L   C + ++  A I  +      L+NY+ HF R+ +    + +    +  PYSL+L ++ +SGYQ+ + + G  +  F +  + Y LI +F++ +   +NS+    L+N   +  +  +  I++  +V   F   K     +NN R+F I+ H  F+ N ++G  N + ++I  +      F R+D +  P++L   D+ + AY G ++ +++  NPIL+C  H   ++    NI                   R  WH+A TL+ NP L
Sbjct:  312 FGFPPRLMIGMLVGLYFAYRIFIDNILGLTPIAWKLIAEINNKYLITQTNISRSFYLIWSNYSLYSKMEIQNSFRYLTFSYTHLLISCLLSAIFIAFINSVIQSLLLLRNYRLHFHRITRKGFSTFMDVKRAPPPYSLILGYVRFSGYQAAYTLWGILVVTFFMFIILYLLIGIFLLPLFYVENSWSRKLLINYGPVLVVTIIFNIIQTTVVKYIFVMEKGTLMEVNNRRSFMIYTHCAFFLNAMMGIFNSVKRVIIWIFSGAFCFSRIDFSSLPEYLHGFDSGYMAYVGFVYTEQYHFNPILQCFSHLLMEMKREKNIYVKEDELNLLNNDKRRMRFRNLWHVAVTLINNPQL 665          
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Planmine SMEST
Match: SMESG000041908.1 (SMESG000041908.1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.786e-12
Identity = 65/228 (28.51%), Postives = 115/228 (50.44%), Query Frame = 2
Query: 1310 FLHYSGYQSVHIVMGFFIQVFTILSVTYCLIFVFII-FILKQNSFIGYFLLNASXXXXXXXXXXXXEKVIVYCFFSSNKPGESMINNSRAFAIFMHVCXXXXXXXXXXXXXXXXXXXVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPILRC----AVHQFKQISGIP--------------NISRTRWHLAYTLVKNPNLKYLR--VNKSSKIRM 1930
            F+ YSGYQ+ +I+ G  + +F +    + LI V ++  I  +NS++  F L +  +     ++A+ + VIV   F   +     +NN R F I+ H  F+ N+++GF N I ++I  +   V  F R+D    P +L+R+D+ + +Y G L+  ++  NPI++C     V    +   +P                 R +W LA TL+ NP L+  R  +++  KIR+
Sbjct:  289 FVRYSGYQAAYILWGIIVVIFFMFLFLFFLIGVILLPLIFLENSWMRKFFLRSLPVIVGSIIIAVFQTVIVRLVFVKERGNLMEVNNRRVFTIYAHCAFFLNVMMGFFNSIRRMIMSIFNFVFCFSRIDFNTLPIYLQRLDSGYMSYIGFLYTLQYHQNPIMKCFTDIFVENHNRKKDLPVNYTIDLDHRIEVGRKYRIKWQLALTLINNPQLQSDRKKISEIDKIRI 516          

HSP 2 Score: 60.8474 bits (146), Expect = 2.931e-9
Identity = 71/259 (27.41%), Postives = 128/259 (49.42%), Query Frame = 2
Query: 1211 LKNYQYHFKRLXXXXXXXXXXXXXXXX-XXXXXXFLHYSGYQSVHIVMGFFIQVFTILSVTYCLIFVFII-FILKQNSFIGYFLLNASXXXXXXXXXXXXEKVIVYCFFSSNKPGESMINNSRAFAIFMHVCXXXXXXXXXXXXXXXXXXXVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPILRCAV--------------HQFKQISGIPNISRT--RWHLAYTLVKNPNLKYLRVNKSSKIRMT 1933
            L+NY+ HF+++ K    SII++        L+   + YSGYQ+ +I+ G  + +F +    +  I V ++  I  +NS+     L +  +  +  +L I + ++V   F   +     INN RAF I+ H  F+ N+++GF   I ++I  ++  V  F R+D    P +L   D+ + +Y G L+  ++  NPIL+C V              ++ K+ S + + SR   +W +A+TL+ N  L+  R  +  K  M 
Sbjct: 1165 LRNYRLHFQKISKKGFSSIIALRKAPNCAGLVSGLVRYSGYQAAYILWGIIVVIFFMFLFLFISIGVVLLPLIFLENSWTRKLFLQSLPVIGLSFVLFIGQSLLVRFVFVKERGSLMEINNRRAFMIYAHCAFFLNVMIGFFTSIKRMIIWMLNFVFCFSRIDFNALPVYLHSFDSGYMSYIGFLYTLQYHQNPILKCFVDLLEEKHLVNRNPLNEGKEKSQLESKSRNLKKWQVAFTLINNLQLQVDRKRRIGKFLMN 1423          
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Planmine SMEST
Match: SMESG000031041.1 (SMESG000031041.1)

HSP 1 Score: 63.929 bits (154), Expect = 2.844e-10
Identity = 59/219 (26.94%), Postives = 107/219 (48.86%), Query Frame = 2
Query: 1310 FLHYSGYQSVHIVMGFFIQVFTILSVTYCLIFVFIIF---ILKQNSFIGYFLLNASXXXXXXXXXXXXEKVIVYCFFSSNKPGESMINNSRAFAIFMHVCXXXXXXXXXXXXXXXXXXXVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILHLQRFFHNPILRC----AVHQFKQISGIPNIS--------------RTRWHLAYTLVKNPNLKYLR 1903
             + YSG+Q+ +I+ G  I V T+    +    + +I    I  +NS+I   +L          ++  ++++++   F   +     INN RAF I+ H  F+ N+++GF N I ++I  ++  V  F R+D    P +L+R+D+ + +Y G L+  ++  NPIL+C     +   K+   I N S              + +WH+A TL+ N  L+  R
Sbjct:  415 LVRYSGFQAAYILWG--ITVVTVFMFLFLFFLIGVILLPLIYLENSWIRKLILQLLPFLIATYIVIAIQRLLIKFVFVKERGSLMEINNRRAFMIYAHCAFFLNVMMGFFNSIKRMIIWMLNFVFCFSRIDFNALPVYLQRLDSGYMSYIGFLYTLQYHQNPILKCFTDMLMENHKKKKSIANNSDMSLDYKNASKRNYKIKWHVALTLINNCQLQTDR 631          
The following BLAST results are available for this feature:
BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
stra6l.18.630e-626.30stra6-like, gene 1 [Source:NCBI gene;Acc:100145324... [more]
stra6l.19.370e-626.30stra6-like, gene 1 [Source:NCBI gene;Acc:100145324... [more]
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BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of stimulated by retinoic acid gene 6 protein homolog vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of stimulated by retinoic acid gene 6 protein homolog vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5N5JJ644.071e-624.30Uncharacterized protein OS=Pangasianodon hypophtha... [more]
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BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
stra6l9.188e-623.93STRA6-like [Source:ZFIN;Acc:ZDB-GENE-070410-116][more]
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BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of stimulated by retinoic acid gene 6 protein homolog vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000056366.10.000e+099.45SMESG000056366.1[more]
SMESG000031061.11.858e-1623.45SMESG000031061.1[more]
SMESG000041900.12.527e-1624.29SMESG000041900.1[more]
SMESG000041908.11.786e-1228.51SMESG000041908.1[more]
SMESG000031041.12.844e-1026.94SMESG000031041.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30026898 ID=SMED30026898|Name=stimulated by retinoic acid gene 6 protein homolog|organism=Schmidtea mediterranea sexual|type=transcript|length=2030bp
AGCGGCATTTCAAAAATGAAATATTTTGATAAGATAATTCACCAGACCAT
TCTAATCATTGAAATATATACAAAAACGTTCCATTGAACAGAGATTGTTT
CAAAATAAAATAATGAATAACACAAACCAATACTCATCAAATTCTTCGAA
AAACTTTGAAAAGCTTTGCAAAACATTAGAAATTTTCTATTATTTTTTCT
TAGAGACAACATTTCCCGAACAATCACCAAAAGTCTCTGGGCTCAATTTT
TCAATTCAACTTTTTTGCGCCTTGATTGCAATATTATTAATGTTTGTAGT
AATTTTCATAAAACAAAAGAAATTCCTACGAGCAAAGTCATGCCGAACAG
TTGGATTGAGTATTCCGTTTAATCAAATGAGATTTCACAGCGGTTCGGTG
ATGTTTGTATTGGCTTATATTTTATTAGGCGGTCACATTATCAATTTGTT
CACCGACAAACATTTCAACAATATTCCAGCTGGTAATTTTACATTCACGG
TTTATTTTGTTATGAAATTATTAATTTCTTATTTATTTATTTATATGTAT
TATCCTCTTTTTGCCGGAATTGCCAATCGAGGAAAGAGTTTTAAAATTAT
CGGTCTTTGTTTTTGTTGCCTACGGTTGACTTCGGAAATCAGCAATGTAG
CCTTTCTACAGCTTGACTATGTCCACCATTTCTATAATTCCATTTTTATG
ATTGGATATAGTTTAACAAACGTCATTATCACGACAGTCATTGCTGCTTT
CTTGATAAGTCTAATTTTCTATCCATCTAATGAAGAATTTCGAGATCGAG
TTCTGAATGAAATCTACGTCCAAGACCTTCTGAAAAAGAGCAAACCTAAA
TCAAAGCCTTGGTACTTGAAATTACTTTTAAAACCGTTTGAAGGGATTAT
TGAAAGAAAATTCAGTTTCCCGACCGAGATATTTGTAGGGATATTTTTTG
GTTTATATGCATGTGTTTATTTGTCAACGAGATGTCTCACATCGCTGCTA
GACTGGAGAGACCTGGGATTCAGAAGGTTAAATCAATCAGTTCCATTAAA
TAAAGGATTTTGGAGGATTTTCTACAATTATTTAAACAGAAATGATGTGC
AACAAAACGTTCCAATATTTATTAAATATTCAGTAAGTTTATTCAATTAT
TGCTTCATGTTTTCCTTAGCCTGCGCTGGGATAATTCAAATTTCCCATAT
AGCATGTTCATTAAAGAACTATCAGTATCATTTCAAAAGACTTTATAAAG
ATAATTCTAAATCCATCATTTCAATTTCATCTTACAATCCGTATTCTCTA
CTATTGAACTTTTTACATTATTCAGGCTACCAGTCGGTTCATATTGTCAT
GGGATTCTTTATACAAGTATTCACTATTCTTTCCGTTACATATTGTTTGA
TCTTTGTGTTTATAATTTTCATTTTGAAACAAAATTCATTTATCGGTTAC
TTTCTGTTGAATGCGAGTGCAATTGGTTTTATAATAGGTTTATTAGCGAT
TCTAGAAAAGGTAATAGTTTACTGCTTTTTCTCTTCAAATAAACCTGGAG
AGTCCATGATAAATAATTCAAGAGCATTTGCCATTTTTATGCATGTTTGC
TTTTATTTCAATTTACTTCTTGGGTTTTTGAATGGGATCGGTAAATTAAT
TTTTGGAGTTATTTTGGCTGTGTTAAATTTTGGCCGACTGGATTTGGCAT
ATTTTCCAAAACATCTAGAGAGAATAGACACAGCTCACAAAGCATATTGT
GGAATTCTTCATTTACAGAGATTTTTTCACAATCCTATTTTGAGATGTGC
CGTTCATCAGTTTAAACAAATTTCCGGAATTCCAAACATATCAAGAACTC
GATGGCATTTGGCATATACATTAGTGAAAAATCCTAATCTAAAATATTTA
CGAGTCAACAAAAGTTCAAAAATTCGAATGACTTTTGTTTGATAAAATTT
TTACAAATATTAGTTGTGATGATTTTTTTTATGTTTGTATTCACTGAAAT
TTAAATAAATATAAATTGTTTAAAAAAAAA
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protein sequence of SMED30026898-orf-1

>SMED30026898-orf-1 ID=SMED30026898-orf-1|Name=SMED30026898-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=610bp
MNNTNQYSSNSSKNFEKLCKTLEIFYYFFLETTFPEQSPKVSGLNFSIQL
FCALIAILLMFVVIFIKQKKFLRAKSCRTVGLSIPFNQMRFHSGSVMFVL
AYILLGGHIINLFTDKHFNNIPAGNFTFTVYFVMKLLISYLFIYMYYPLF
AGIANRGKSFKIIGLCFCCLRLTSEISNVAFLQLDYVHHFYNSIFMIGYS
LTNVIITTVIAAFLISLIFYPSNEEFRDRVLNEIYVQDLLKKSKPKSKPW
YLKLLLKPFEGIIERKFSFPTEIFVGIFFGLYACVYLSTRCLTSLLDWRD
LGFRRLNQSVPLNKGFWRIFYNYLNRNDVQQNVPIFIKYSVSLFNYCFMF
SLACAGIIQISHIACSLKNYQYHFKRLYKDNSKSIISISSYNPYSLLLNF
LHYSGYQSVHIVMGFFIQVFTILSVTYCLIFVFIIFILKQNSFIGYFLLN
ASAIGFIIGLLAILEKVIVYCFFSSNKPGESMINNSRAFAIFMHVCFYFN
LLLGFLNGIGKLIFGVILAVLNFGRLDLAYFPKHLERIDTAHKAYCGILH
LQRFFHNPILRCAVHQFKQISGIPNISRTRWHLAYTLVKNPNLKYLRVNK
SSKIRMTFV*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002142parenchyma
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14752RBP_receptorcoord: 51..569
e-value: 1.5E-32
score: 113.0
NoneNo IPR availablePANTHERPTHR21444FAMILY NOT NAMEDcoord: 323..602
NoneNo IPR availablePANTHERPTHR21444:SF15coord: 323..602
NoneNo IPR availableTMHMMTMhelixcoord: 443..465
NoneNo IPR availableTMHMMTMhelixcoord: 44..66
NoneNo IPR availableTMHMMTMhelixcoord: 501..523
NoneNo IPR availableTMHMMTMhelixcoord: 274..296
NoneNo IPR availableTMHMMTMhelixcoord: 91..113
NoneNo IPR availableTMHMMTMhelixcoord: 341..363
NoneNo IPR availableTMHMMTMhelixcoord: 163..182
NoneNo IPR availableTMHMMTMhelixcoord: 128..150
NoneNo IPR availableTMHMMTMhelixcoord: 416..438
NoneNo IPR availableTMHMMTMhelixcoord: 197..219
NoneNo IPR availableTMHMMTMhelixcoord: 384..406