PiggyBac transposable element-derived protein 5

Overview
NamePiggyBac transposable element-derived protein 5
Smed IDSMED30026828
Length (bp)424
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of PiggyBac transposable element-derived protein 5 (SMED30026828) t-SNE clustered cells

Violin plots show distribution of expression levels for PiggyBac transposable element-derived protein 5 (SMED30026828) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of PiggyBac transposable element-derived protein 5 (SMED30026828) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for PiggyBac transposable element-derived protein 5 (SMED30026828) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30026828

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
neuronSMED30026828SMESG000081274.1 SMESG000074085.1 SMESG000071708.1 SMESG000060519.1 SMESG000033494.1 SMESG000022037.1 SMESG000019964.1 SMESG000008378.1 Contig15257uc_Smed_v2PMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
neuronSMED30026828SMESG000081274.1 SMESG000074085.1 SMESG000071708.1 SMESG000060519.1 SMESG000033494.1 SMESG000022037.1 SMESG000019964.1 SMESG000008378.1 Contig15257newmark_estsPMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
reproductive organSMED30026828SMESG000081274.1 SMESG000071708.1 SMESG000060519.1 SMESG000058103.1 SMESG000022037.1 SMESG000008378.1 SMESG000080313.1 SMESG000066935.1 SMESG000044742.1 Contig14429uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30026828SMESG000081274.1 SMESG000071708.1 SMESG000060519.1 SMESG000058103.1 SMESG000022037.1 SMESG000008378.1 SMESG000080313.1 SMESG000066935.1 SMESG000044742.1 Contig14429newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of PiggyBac transposable element-derived protein 5 vs. TrEMBL
Match: A0A3C1P802 (Uncharacterized protein OS=Planktothrix sp. UBA8402 OX=2055759 GN=DCQ63_02380 PE=4 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.018e-35
Identity = 68/150 (45.33%), Postives = 103/150 (68.67%), Query Frame = 2 
Query:    2 KTWINVLQKAIYSYNYSPRKGLNGMRPIDVY--STNNIDNWISQQS-DSIIKKPK---YKVGNHVRISKISASPFIKNFDNNWSDEVFQISEIDTNQNPVMYFIKDEENNQ-VSGKFYEQELQVI--EAPTVFRIQKILKTKNVGKYKQY 424
            K W+ VL K I++YN++  + L G  P+D+Y    NN+++W+ QQ  D+ ++K +   Y VG+ VRIS+IS SPF KNFD NWS+E+F+I+ +D    PVMY +KD   ++ + GKFY +ELQ +    P V+RI+KI++TK  G++KQY
Sbjct:  195 KKWLLVLPKLIHAYNHASHRSLKGKSPVDLYVNDPNNLNDWLHQQQKDTNVRKRRQTLYSVGSLVRISRISTSPFRKNFDQNWSEEIFRIASVDKASKPVMYVLKDVATDELIEGKFYHEELQDVGDSLPNVYRIEKIIRTKGKGEHKQY 344
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BLAST of PiggyBac transposable element-derived protein 5 vs. TrEMBL
Match: D7GYM7 (Uncharacterized protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC001911 PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.257e-18
Identity = 53/134 (39.55%), Postives = 76/134 (56.72%), Query Frame = 2 
Query:    8 WINVLQKAIYSYNYSPRKGLNGMRPIDVYSTNN---IDNWISQQSDSIIKKPKYKVGNHVRISKISASPFIKNFDNNWSDEVFQISEIDTNQNPVMYFIKDEENNQVSGKFYEQELQVIEAPTVFRIQKILKTK 400
            WIN+L   I  YN + R G  G++PI +   N    +D   S      I KPK+KVG+ VRISK     F K +  NWS+EVF +S+I  N NP  Y ++D     + G FY +ELQ ++ P V+ ++K+L+ K
Sbjct:  159 WINILPDIIKKYN-NTRHGTTGLKPISINKKNERKVLDQVYSHLKTMDIYKPKFKVGDFVRISK-HRHLFKKGYTPNWSNEVFTVSKIQ-NTNPRTYLLQDVSGETIRGGFYTEELQKVKYPNVYLVEKVLRKK 289
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BLAST of PiggyBac transposable element-derived protein 5 vs. TrEMBL
Match: K7J9M3 (Uncharacterized protein OS=Nasonia vitripennis OX=7425 PE=4 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.401e-18
Identity = 50/134 (37.31%), Postives = 81/134 (60.45%), Query Frame = 2 
Query:    8 WINVLQKAIYSYNYSPRKGLNGMRPIDVYSTNN--IDNWISQQSDSIIKKPKYKVGNHVRISKISASPFIKNFDNNWSDEVFQISEIDTNQNPVMYFIKDEENNQVSGKFYEQELQVIEAPTVFRIQKILKTKN 403
            W+ +L   I  YN +  + + GM+P +V + N   I    + +S  + KKPK+K+G+ VR+SK+    F K + +NWS E+F IS +    NPV Y +KD ++N ++G FYEQEL   + P V+ ++K+LK + 
Sbjct:   73 WLKILLDLITKYNDTKHRTI-GMKPNEVSTANQSQISKRFTCES-RLTKKPKFKIGDKVRLSKVKQV-FEKGYIHNWSTEIFTISRVSAT-NPVTYHLKDYQDNPITGGFYEQELLKTKYPDVYLVEKVLKKRG 202
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BLAST of PiggyBac transposable element-derived protein 5 vs. TrEMBL
Match: A0A1Y1KRZ5 (Chromo domain-containing protein (Fragment) OS=Photinus pyralis OX=7054 PE=4 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.407e-18
Identity = 57/141 (40.43%), Postives = 84/141 (59.57%), Query Frame = 2 
Query:   14 NVLQKAIYSYNYSPRKGLNGMRPIDVYSTNNIDNWISQQSDSIIK--KPKYKVGNHVRISKISASPFIKNFDNNWSDEVFQISEIDTNQNPVMYFIKDEENNQVSGKFYEQELQVI--EAPTVFRIQKILKTKNVGKYKQY 424
            +VLQ  + +YN S    +  M PI+V   N +  W +  +    K  +PKYKVG HVRI++ S   F K +++N+S EVF+I ++  N+ P +Y I D     + G FYE+ELQV+  +  TVF+I KIL+ K  GK K+Y
Sbjct:    1 DVLQDLVSAYNKSYHSAIK-MAPIEVTDENILIVWQNLYAKGFGKEAQPKYKVGQHVRIAR-SKHHFEKGYESNFSQEVFKIVKV-INRRPPVYRIVDLNGEDIEGTFYEEELQVVTLDENTVFKIDKILEEKGRGKNKKY 138
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BLAST of PiggyBac transposable element-derived protein 5 vs. TrEMBL
Match: D7ELT6 (Uncharacterized protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC001858 PE=4 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.351e-18
Identity = 52/134 (38.81%), Postives = 76/134 (56.72%), Query Frame = 2 
Query:    8 WINVLQKAIYSYNYSPRKGLNGMRPIDVYSTNN---IDNWISQQSDSIIKKPKYKVGNHVRISKISASPFIKNFDNNWSDEVFQISEIDTNQNPVMYFIKDEENNQVSGKFYEQELQVIEAPTVFRIQKILKTK 400
            WIN+L   I  YN + R G  G++PI +   N    +D   S      I KPK++VG+ VRISK     F K +  NWS+EVF +S+I  N NP  Y ++D     + G FY +ELQ ++ P V+ ++K+L+ K
Sbjct:  159 WINILPDIIKKYN-NTRHGTTGLKPISINKKNERKVLDQVYSHLKTMDIYKPKFQVGDFVRISK-HRHLFKKGYTPNWSNEVFTVSKIQ-NTNPRTYLLQDVSGETIRGGFYTKELQKVKYPNVYLVEKVLRKK 289
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BLAST of PiggyBac transposable element-derived protein 5 vs. Ensembl Cavefish
Match: ENSAMXT00000055500.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02001032.1:12601:13692:-1 gene:ENSAMXG00000041341.1 transcript:ENSAMXT00000055500.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 68.5514 bits (166), Expect = 3.635e-14
Identity = 45/139 (32.37%), Postives = 86/139 (61.87%), Query Frame = 2 
Query:    2 KTWINVLQKAIYSYNYSPRKGLNGMRPIDVYSTNNIDNWISQQS--DSIIKKP--KYKVGNHVRISKISASPFIKNFDNNWSDEVFQISEIDTNQNPVMYFIKDEENNQVSGKFYEQELQ--VIEAPTVFRIQKILKTK 400
            + +I+V+Q+ ++SYN++    +  M+P++V  TN+   + +      S +KK   K+K+G+ VRIS++ A  F K ++ N++DE F ISE    ++P +Y + D +  +++G FYE ELQ  ++     F+I+KI++ +
Sbjct:  194 RKYIDVVQELVHSYNHNYHSSIK-MKPVEVDETNSFKVFKTLYGLFPSRVKKLRFKFKIGDVVRISRLKAH-FEKGYEQNYTDEYFTISE-RIPRDPPVYKLHDADGEEITGTFYEPELQKIIVGKDKSFKIEKIIQER 329
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BLAST of PiggyBac transposable element-derived protein 5 vs. Planmine SMEST
Match: SMESG000019964.1 (SMESG000019964.1)

HSP 1 Score: 263.848 bits (673), Expect = 1.645e-82
Identity = 128/135 (94.81%), Postives = 130/135 (96.30%), Query Frame = 2 
Query:    2 KTWINVLQKAIYSYNYSPRKGLNGMRPIDVYSTNNIDNWISQQSDSIIKKPKYKVGNHVRISKISASPFIKNFDNNWSDEVFQISEIDTNQNPVMYFIKDEENNQVSGKFYEQELQVIEAPTVFRIQKILKTKNV 406
            KTWINVLQKAIYSYNYSP +GLNGMRPIDVYSTNN+DNWISQQSDSIIKKPKYKVGNHVRISKISASPFIKNFDNNWSDEVFQISEID N NPVMY IKD ENNQVSGKFYEQELQVIEAPTVFRIQKILKTKNV
Sbjct:  194 KTWINVLQKAIYSYNYSPHRGLNGMRPIDVYSTNNMDNWISQQSDSIIKKPKYKVGNHVRISKISASPFIKNFDNNWSDEVFQISEIDMNHNPVMYLIKDYENNQVSGKFYEQELQVIEAPTVFRIQKILKTKNV 328
[Close]
BLAST of PiggyBac transposable element-derived protein 5 vs. Planmine SMEST
Match: SMESG000019964.1 (SMESG000019964.1)

HSP 1 Score: 263.848 bits (673), Expect = 1.722e-82
Identity = 128/135 (94.81%), Postives = 130/135 (96.30%), Query Frame = 2 
Query:    2 KTWINVLQKAIYSYNYSPRKGLNGMRPIDVYSTNNIDNWISQQSDSIIKKPKYKVGNHVRISKISASPFIKNFDNNWSDEVFQISEIDTNQNPVMYFIKDEENNQVSGKFYEQELQVIEAPTVFRIQKILKTKNV 406
            KTWINVLQKAIYSYNYSP +GLNGMRPIDVYSTNN+DNWISQQSDSIIKKPKYKVGNHVRISKISASPFIKNFDNNWSDEVFQISEID N NPVMY IKD ENNQVSGKFYEQELQVIEAPTVFRIQKILKTKNV
Sbjct:  194 KTWINVLQKAIYSYNYSPHRGLNGMRPIDVYSTNNMDNWISQQSDSIIKKPKYKVGNHVRISKISASPFIKNFDNNWSDEVFQISEIDMNHNPVMYLIKDYENNQVSGKFYEQELQVIEAPTVFRIQKILKTKNV 328
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BLAST of PiggyBac transposable element-derived protein 5 vs. Planmine SMEST
Match: SMESG000008378.1 (SMESG000008378.1)

HSP 1 Score: 262.307 bits (669), Expect = 6.712e-82
Identity = 127/135 (94.07%), Postives = 132/135 (97.78%), Query Frame = 2 
Query:    2 KTWINVLQKAIYSYNYSPRKGLNGMRPIDVYSTNNIDNWISQQSDSIIKKPKYKVGNHVRISKISASPFIKNFDNNWSDEVFQISEIDTNQNPVMYFIKDEENNQVSGKFYEQELQVIEAPTVFRIQKILKTKNV 406
            KTWINVLQKAIYSYNYSP +GLNGMRPIDVYSTNN+DNWISQQSDSIIKKPKYKVGNHVRISKISASPFIKNF+NNWSDEVFQISEID NQN VMYFIK++ENNQVSGKFYEQELQVIEAPTVFRIQKILKTKNV
Sbjct:  217 KTWINVLQKAIYSYNYSPHRGLNGMRPIDVYSTNNMDNWISQQSDSIIKKPKYKVGNHVRISKISASPFIKNFNNNWSDEVFQISEIDMNQNHVMYFIKEDENNQVSGKFYEQELQVIEAPTVFRIQKILKTKNV 351
[Close]
BLAST of PiggyBac transposable element-derived protein 5 vs. Planmine SMEST
Match: SMESG000071708.1 (SMESG000071708.1)

HSP 1 Score: 231.876 bits (590), Expect = 3.371e-71
Identity = 116/135 (85.93%), Postives = 118/135 (87.41%), Query Frame = 2 
Query:    2 KTWINVLQKAIYSYNYSPRKGLNGMRPIDVYSTNNIDNWISQQSDSIIKKPKYKVGNHVRISKISASPFIKNFDNNWSDEVFQISEIDTNQNPVMYFIKDEENNQVSGKFYEQELQVIEAPTVFRIQKILKTKNV 406
            KTWIN               GLNGMRPIDVYSTNN+DNWISQQSDSIIKKPKYKVGNHVRISKISASPFIKNFDNNWSDEVFQISEID NQNPVMYFIKD+ENNQVSGKFYEQELQVIE PTVFRIQKILKTKNV
Sbjct:  194 KTWIN---------------GLNGMRPIDVYSTNNMDNWISQQSDSIIKKPKYKVGNHVRISKISASPFIKNFDNNWSDEVFQISEIDMNQNPVMYFIKDDENNQVSGKFYEQELQVIETPTVFRIQKILKTKNV 313
[Close]
BLAST of PiggyBac transposable element-derived protein 5 vs. Planmine SMEST
Match: SMESG000022037.1 (SMESG000022037.1)

HSP 1 Score: 188.348 bits (477), Expect = 1.110e-60
Identity = 103/141 (73.05%), Postives = 106/141 (75.18%), Query Frame = 2 
Query:    2 KTWINVLQKAIYSYNYSPRKGLNGMRPIDVYSTNNIDNWISQQSDSIIKKPKYKVGNHVRISKISASPFIKNFDNNWSDEVFQISEIDTNQNPVMYFIKDEENNQVSGKFYEQELQVIEAPTVFRIQKILKTKNVGKYKQY 424
            KTWINVLQKAIYSYNYS     NGMRPIDVYSTNN+DNWISQQSDSIIKKPKYKV                              EIDTNQNPVMYFIKD+ENNQVSGKFYEQELQVIEAPTVFRIQKILK+KNVGKYKQY
Sbjct:  145 KTWINVLQKAIYSYNYS----YNGMRPIDVYSTNNMDNWISQQSDSIIKKPKYKV------------------------------EIDTNQNPVMYFIKDDENNQVSGKFYEQELQVIEAPTVFRIQKILKSKNVGKYKQY 251
The following BLAST results are available for this feature:
BLAST of PiggyBac transposable element-derived protein 5 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of PiggyBac transposable element-derived protein 5 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of PiggyBac transposable element-derived protein 5 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of PiggyBac transposable element-derived protein 5 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of PiggyBac transposable element-derived protein 5 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of PiggyBac transposable element-derived protein 5 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of PiggyBac transposable element-derived protein 5 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of PiggyBac transposable element-derived protein 5 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3C1P8021.018e-3545.33Uncharacterized protein OS=Planktothrix sp. UBA840... [more]
D7GYM71.257e-1839.55Uncharacterized protein OS=Tribolium castaneum OX=... [more]
K7J9M31.401e-1837.31Uncharacterized protein OS=Nasonia vitripennis OX=... [more]
A0A1Y1KRZ53.407e-1840.43Chromo domain-containing protein (Fragment) OS=Pho... [more]
D7ELT65.351e-1838.81Uncharacterized protein OS=Tribolium castaneum OX=... [more]
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BLAST of PiggyBac transposable element-derived protein 5 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSAMXT00000055500.13.635e-1432.37pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
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BLAST of PiggyBac transposable element-derived protein 5 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of PiggyBac transposable element-derived protein 5 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of PiggyBac transposable element-derived protein 5 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of PiggyBac transposable element-derived protein 5 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of PiggyBac transposable element-derived protein 5 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000019964.11.645e-8294.81SMESG000019964.1[more]
SMESG000019964.11.722e-8294.81SMESG000019964.1[more]
SMESG000008378.16.712e-8294.07SMESG000008378.1[more]
SMESG000071708.13.371e-7185.93SMESG000071708.1[more]
SMESG000022037.11.110e-6073.05SMESG000022037.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30026828 ID=SMED30026828|Name=PiggyBac transposable element-derived protein 5|organism=Schmidtea mediterranea sexual|type=transcript|length=424bp
TAAAACCTGGATAAATGTTTTACAGAAAGCAATTTATAGCTACAATTATT
CGCCACGTAAGGGTTTAAATGGAATGCGACCAATTGATGTGTATTCAACG
AATAATATTGATAATTGGATATCACAACAATCTGATTCTATCATTAAAAA
GCCTAAATATAAAGTGGGTAACCACGTTAGAATAAGTAAAATCAGTGCTT
CTCCTTTCATCAAGAATTTCGACAACAATTGGAGCGATGAAGTATTTCAA
ATCTCAGAAATTGATACGAATCAGAATCCTGTAATGTACTTTATCAAAGA
TGAGGAAAACAATCAAGTTAGTGGAAAATTCTACGAACAGGAACTCCAAG
TTATAGAAGCCCCTACTGTATTCAGAATTCAAAAGATATTAAAAACCAAG
AATGTTGGTAAATATAAACAATAC
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protein sequence of SMED30026828-orf-1

>SMED30026828-orf-1 ID=SMED30026828-orf-1|Name=SMED30026828-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=141bp
KTWINVLQKAIYSYNYSPRKGLNGMRPIDVYSTNNIDNWISQQSDSIIKK
PKYKVGNHVRISKISASPFIKNFDNNWSDEVFQISEIDTNQNPVMYFIKD
EENNQVSGKFYEQELQVIEAPTVFRIQKILKTKNVGKYKQY
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: biological process
TermDefinition
GO:0015074DNA integration
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0002089reproductive organ