Dimer_Tnp_hAT domain-containing protein

Overview
NameDimer_Tnp_hAT domain-containing protein
Smed IDSMED30026825
Length (bp)4602
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Dimer_Tnp_hAT domain-containing protein (SMED30026825) t-SNE clustered cells

Violin plots show distribution of expression levels for Dimer_Tnp_hAT domain-containing protein (SMED30026825) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Dimer_Tnp_hAT domain-containing protein (SMED30026825) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Dimer_Tnp_hAT domain-containing protein (SMED30026825) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30026825

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30026825 dd_Smed_v4_48621_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Match: Q7YXU7 (ORF2 (Fragment) OS=Girardia tigrina OX=6162 PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.656e-10
Identity = 65/237 (27.43%), Postives = 111/237 (46.84%), Query Frame = -1 
Query: 1780 IMAYADHLVLISDTRSKIKQMLNK---IYRLCNAKIQTQQLWLL--PA*EKQYKHFCHTLW*KHTNNQ*K*YKYLEV-----------DLLYLVLNETTKMITSHIHPVQKLQVFKTFIHSRMIFPFRNSNI--NHMVIDNNRNKVV-----QHRKKQLGYDQKIKRLFKNMLGNIHQNMNNNFI*IHPKLGDLGITLSIDEYLIQSVAHLIKLLNSKDTKMRDFIMAELIEHTKIR 2421
            I+AYAD + LISD+   +++M+ K   I R+        +  L+  P  +K+               +   YKYL             +LL ++++ET  +  S++HP QK+  ++TFIHS++ F  R+S I  +  + +   NK         +  Q  YD +  +LF N    +      +F  I    G   +T  +DEYLIQS+ ++ +LL S+D  +   I  +LI H  ++
Sbjct:  534 ILAYADDIALISDSHKDLQEMVYKAEYIGRILGLLFNPSKCALMDIPHDKKRTPPILVNGEMIKCVGKADPYKYLGTFRSWFRKLDIKELLQMMMDETKLITESNLHPHQKIHAYETFIHSQLPFHLRHSRIPFSDFITNRKTNKTTNNSNDSEKSIQKAYDPESGQLFLNTFA-LPSGCAKDFFYITKDAGGPQLTSGLDEYLIQSIMYIFRLLGSEDPTLNSAIKHDLISHLNLK 769
[Close]
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000007496.1 (SMESG000007496.1)

HSP 1 Score: 199.134 bits (505), Expect = 1.638e-54
Identity = 114/259 (44.02%), Postives = 157/259 (60.62%), Query Frame = -1 
Query: 1720 MAYADHLVLISDTRSKIKQMLNKIYRLCNAKIQTQQLWLLPA*EKQYKHFCHTLW*KHTNN---------------Q*K*YKYLEVDL-----------LYLVLNETTKMITSHIHPVQKLQVFKTFIHSRMIFPFRNSNINHMVIDNNRNKVVQHRKKQLGYDQKIKRLFKNMLGNIHQNMNNNFI*IHPKLGDLGITLSIDEYLIQSVAHLIKLLNSKDTKMRDFIMAELIEHTKIRFSYQMVNLDDALKWLPSEIK 2418
            MAYAD +VLIS  R++++ ML  I +      +   L   P       + C     K  N                +   YKYL VD            L L L ++ K+  S +HP QK+Q +KT IHSR++  FRN ++NHM++D+NRNK+VQHR+KQLG+DQKIKR  K+ L +IHQN+NNNF+  + K+G LGI  SI EY IQS+A+LI++LNS +TKMRDFI+ ELI  T+ RF  Q  ++D +L+WL +EIK
Sbjct:    1 MAYADDIVLISKNRTQMRSMLKDITKY----TEMATLKFRP-------NKCGYFQLKRNNTDPSLKLYDENIPIIVENNLYKYLGVDFGQKGKHSIDDTLDLALKDSEKLFNSDLHPAQKIQAYKTHIHSRLVCIFRNCHVNHMILDSNRNKIVQHREKQLGFDQKIKRKLKDTLQDIHQNLNNNFLYANIKMGGLGIVPSIYEYFIQSIAYLIRILNSSETKMRDFIIKELIAITQGRFPNQTADIDLSLRWLNAEIK 248

HSP 2 Score: 35.4242 bits (80), Expect = 1.638e-54
Identity = 16/34 (47.06%), Postives = 23/34 (67.65%), Query Frame = -3 
Query: 1604 PKTIFTKFR*SAHRLNENFGTIVRLVFDKDKFRV 1705
            PKTIF+KF  S  RLNE F  I+++   K++F +
Sbjct:  254 PKTIFSKFCNSIRRLNEKFNIIIKITTFKERFEL 287

HSP 3 Score: 53.5286 bits (127), Expect = 1.865e-6
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = -2 
Query: 2256 KCLTKYTDSATLKFKPSNFGYFQLKRNNTSTSVTLY 2363
            K +TKYT+ ATLKF+P+  GYFQLKRNNT  S+ LY
Sbjct:   22 KDITKYTEMATLKFRPNKCGYFQLKRNNTDPSLKLY 57
[Close]
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000007496.1 (SMESG000007496.1)

HSP 1 Score: 199.134 bits (505), Expect = 1.721e-54
Identity = 114/259 (44.02%), Postives = 157/259 (60.62%), Query Frame = -1 
Query: 1720 MAYADHLVLISDTRSKIKQMLNKIYRLCNAKIQTQQLWLLPA*EKQYKHFCHTLW*KHTNN---------------Q*K*YKYLEVDL-----------LYLVLNETTKMITSHIHPVQKLQVFKTFIHSRMIFPFRNSNINHMVIDNNRNKVVQHRKKQLGYDQKIKRLFKNMLGNIHQNMNNNFI*IHPKLGDLGITLSIDEYLIQSVAHLIKLLNSKDTKMRDFIMAELIEHTKIRFSYQMVNLDDALKWLPSEIK 2418
            MAYAD +VLIS  R++++ ML  I +      +   L   P       + C     K  N                +   YKYL VD            L L L ++ K+  S +HP QK+Q +KT IHSR++  FRN ++NHM++D+NRNK+VQHR+KQLG+DQKIKR  K+ L +IHQN+NNNF+  + K+G LGI  SI EY IQS+A+LI++LNS +TKMRDFI+ ELI  T+ RF  Q  ++D +L+WL +EIK
Sbjct:    1 MAYADDIVLISKNRTQMRSMLKDITKY----TEMATLKFRP-------NKCGYFQLKRNNTDPSLKLYDENIPIIVENNLYKYLGVDFGQKGKHSIDDTLDLALKDSEKLFNSDLHPAQKIQAYKTHIHSRLVCIFRNCHVNHMILDSNRNKIVQHREKQLGFDQKIKRKLKDTLQDIHQNLNNNFLYANIKMGGLGIVPSIYEYFIQSIAYLIRILNSSETKMRDFIIKELIAITQGRFPNQTADIDLSLRWLNAEIK 248

HSP 2 Score: 35.4242 bits (80), Expect = 1.721e-54
Identity = 16/34 (47.06%), Postives = 23/34 (67.65%), Query Frame = -3 
Query: 1604 PKTIFTKFR*SAHRLNENFGTIVRLVFDKDKFRV 1705
            PKTIF+KF  S  RLNE F  I+++   K++F +
Sbjct:  254 PKTIFSKFCNSIRRLNEKFNIIIKITTFKERFEL 287

HSP 3 Score: 53.1434 bits (126), Expect = 2.194e-6
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = -2 
Query: 2256 KCLTKYTDSATLKFKPSNFGYFQLKRNNTSTSVTLY 2363
            K +TKYT+ ATLKF+P+  GYFQLKRNNT  S+ LY
Sbjct:   22 KDITKYTEMATLKFRPNKCGYFQLKRNNTDPSLKLY 57
[Close]
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000007496.1 (SMESG000007496.1)

HSP 1 Score: 199.519 bits (506), Expect = 1.765e-54
Identity = 114/259 (44.02%), Postives = 157/259 (60.62%), Query Frame = -1 
Query: 1720 MAYADHLVLISDTRSKIKQMLNKIYRLCNAKIQTQQLWLLPA*EKQYKHFCHTLW*KHTNN---------------Q*K*YKYLEVDL-----------LYLVLNETTKMITSHIHPVQKLQVFKTFIHSRMIFPFRNSNINHMVIDNNRNKVVQHRKKQLGYDQKIKRLFKNMLGNIHQNMNNNFI*IHPKLGDLGITLSIDEYLIQSVAHLIKLLNSKDTKMRDFIMAELIEHTKIRFSYQMVNLDDALKWLPSEIK 2418
            MAYAD +VLIS  R++++ ML  I +      +   L   P       + C     K  N                +   YKYL VD            L L L ++ K+  S +HP QK+Q +KT IHSR++  FRN ++NHM++D+NRNK+VQHR+KQLG+DQKIKR  K+ L +IHQN+NNNF+  + K+G LGI  SI EY IQS+A+LI++LNS +TKMRDFI+ ELI  T+ RF  Q  ++D +L+WL +EIK
Sbjct:    1 MAYADDIVLISKNRTQMRSMLKDITKY----TEMATLKFRP-------NKCGYFQLKRNNTDPSLKLYDENIPIIVENNLYKYLGVDFGQKGKHSIDDTLDLALKDSEKLFNSDLHPAQKIQAYKTHIHSRLVCIFRNCHVNHMILDSNRNKIVQHREKQLGFDQKIKRKLKDTLQDIHQNLNNNFLYANIKMGGLGIVPSIYEYFIQSIAYLIRILNSSETKMRDFIIKELIAITQGRFPNQTADIDLSLRWLNAEIK 248

HSP 2 Score: 35.039 bits (79), Expect = 1.765e-54
Identity = 16/34 (47.06%), Postives = 23/34 (67.65%), Query Frame = -3 
Query: 1604 PKTIFTKFR*SAHRLNENFGTIVRLVFDKDKFRV 1705
            PKTIF+KF  S  RLNE F  I+++   K++F +
Sbjct:  254 PKTIFSKFCNSIRRLNEKFNIIIKITTFKERFEL 287

HSP 3 Score: 53.1434 bits (126), Expect = 2.148e-6
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = -2 
Query: 2256 KCLTKYTDSATLKFKPSNFGYFQLKRNNTSTSVTLY 2363
            K +TKYT+ ATLKF+P+  GYFQLKRNNT  S+ LY
Sbjct:   22 KDITKYTEMATLKFRPNKCGYFQLKRNNTDPSLKLY 57
[Close]
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000053822.1 (SMESG000053822.1)

HSP 1 Score: 164.081 bits (414), Expect = 5.390e-40
Identity = 104/267 (38.95%), Postives = 150/267 (56.18%), Query Frame = -1 
Query: 1723 KNILSDHPLIINGHNTSIMAYADHLVLISDTRSKIKQMLNKIYRLC---NAKIQTQQLWLLPA*EKQ---YKHFCHTLW*KHTNNQ*K*YKYLEVDL-----------LYLVLNETTKMITSHIHPVQKLQVFKTFIHSRMIFPFRNSNINHMVIDNNRNKVVQHRKKQLGYDQKIKRLFKNMLGNIHQNMNNNFI*IHPKLGDLGITLSIDEYLIQSVAHLIKLLNSKDTKMRDFIMAELIEHTKIRFSYQMVNLDDALKWLPSEI 2472
            K++L D P  ++  N SI+AYAD +VL+SD+ +KI+  L    RL    N + +  +   L         YK + +       +N+ K YKYL +D            L   L  T  +  S++HP QKL  +KTFIHS++IF FRN  I H ++D +RN++ Q R+KQLGYDQK+K L K M+G+    +NN F+  H KLG LG++ SIDEYLIQSV  + +L +S +T  R+ +  EL  H +        N + ALKW+  EI
Sbjct:  472 KSVLIDCPFHLHDMNISILAYADDIVLVSDSFTKIEMALRMTVRLASHANLRFKPSKSGYLSINNNNHDIYKLYLYNEEVPIISNENK-YKYLGIDFSHKQYQDIDGRLQSALALTNTLFKSYLHPAQKLNAYKTFIHSKLIFSFRNCIIGHRILDCDRNRITQGREKQLGYDQKVKALLKTMVGDKFHALNNYFLYTHCKLGGLGVSSSIDEYLIQSVTGITRLFHSYNTDFREMMKKELA-HAR-----GEENFEAALKWINCEI 731
[Close]
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000053822.1 (SMESG000053822.1)

HSP 1 Score: 163.31 bits (412), Expect = 8.981e-40
Identity = 104/267 (38.95%), Postives = 150/267 (56.18%), Query Frame = -1 
Query: 1723 KNILSDHPLIINGHNTSIMAYADHLVLISDTRSKIKQMLNKIYRLC---NAKIQTQQLWLLPA*EKQ---YKHFCHTLW*KHTNNQ*K*YKYLEVDL-----------LYLVLNETTKMITSHIHPVQKLQVFKTFIHSRMIFPFRNSNINHMVIDNNRNKVVQHRKKQLGYDQKIKRLFKNMLGNIHQNMNNNFI*IHPKLGDLGITLSIDEYLIQSVAHLIKLLNSKDTKMRDFIMAELIEHTKIRFSYQMVNLDDALKWLPSEI 2472
            K++L D P  ++  N SI+AYAD +VL+SD+ +KI+  L    RL    N + +  +   L         YK + +       +N+ K YKYL +D            L   L  T  +  S++HP QKL  +KTFIHS++IF FRN  I H ++D +RN++ Q R+KQLGYDQK+K L K M+G+    +NN F+  H KLG LG++ SIDEYLIQSV  + +L +S +T  R+ +  EL  H +        N + ALKW+  EI
Sbjct:  472 KSVLIDCPFHLHDMNISILAYADDIVLVSDSFTKIEMALRMTVRLASHANLRFKPSKSGYLSINNNNHDIYKLYLYNEEVPIISNENK-YKYLGIDFSHKQYQDIDGRLQSALALTNTLFKSYLHPAQKLNAYKTFIHSKLIFSFRNCIIGHRILDCDRNRITQGREKQLGYDQKVKALLKTMVGDKFHALNNYFLYTHCKLGGLGVSSSIDEYLIQSVTGITRLFHSYNTDFREMMKKELA-HARGE-----ENFEAALKWINCEI 731
The following BLAST results are available for this feature:
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
Q7YXU75.656e-1027.43ORF2 (Fragment) OS=Girardia tigrina OX=6162 PE=4 S... [more]
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000007496.11.638e-5444.02SMESG000007496.1[more]
SMESG000007496.11.721e-5444.02SMESG000007496.1[more]
SMESG000007496.11.765e-5444.02SMESG000007496.1[more]
SMESG000053822.15.390e-4038.95SMESG000053822.1[more]
SMESG000053822.18.981e-4038.95SMESG000053822.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30026825 ID=SMED30026825|Name=Dimer_Tnp_hAT domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=4602bp
AAAAAACTTTTCCAAATAAAACTAAGCAAGTGGAAGCGGAACAATCTATT
GAAAAGTTGGGAAAATTAAAAAGAAAGAAGTTAGAGTCGAATCGGACTCG
TGTCAAGAGAATTTTGTAATCTAGAATAGTATAGATTTAAAAAGCGGCCA
CCCGTGGGATTCCTGTGAAATTGTTGGTATCAATAAAAGTTTCCTTGTGT
TGAGTTATTTCAGTATTATTTAAAGAGCACGTGGAGTTACTTTGAACCAG
CACAAAACTCGACGCAAGGCGCACATGACCATTATTCAGCGGACTATGGA
ATCATTCGACTTCTGGATACTTTCGATCTGTCCAAAATCAATGGATGCAT
CCCTCAAAGCCGATGGCCAATTCATCGTCACTTGCGTCCATATCAACCGG
GAAATAGCGGTGACGAGGGAGGAAATCTCGAGGCATACGGATATCTGACT
GCGTTTCGACACACGGGAATACTCAGTGATCAACTCGTTGGACTTTGATG
AGTAACTGTTGATTTGGAGGCAGATAGACTGCCATGCGTTCAATGTTAAC
GCTCAAATTCATCAGATCTTGGACAGTTACAACGATATTTGAATTGTTTC
GAGCGTCGCCAGGTTAGATTCATCGTCGGCCATGGCGAGTTGAGTAGTCC
GAGTCAATAGTCCGATGCATTAGCTAGTATCTGGGCATTTTCAGCCCTCC
TTCATTCGCGATGTCTTCTGTTCTTGCTGGGGTGATGTTTGTGCGATGTT
CTTAGAGTTTTTGCAGCCGGTTGTGGGAGGATGGAGCGAGATAACCCTCC
GGAATAATGTTCAATTGGCGTTCGAAATCGCGGCCTAGCATTCTACGCTG
TAGTTCAGCTTCGGAGAACTTCTACATCAGTACAGCACTTTGTTCCGAAA
TCACAATTCTCTGGACGCGACTCCTAGATGAGGTCGCTCCTGCTCCGAGT
GAGCCTACTGATGCGCTACTGGAGCGCTTTCACCTTCTCATCATGGTAGT
TACCCAAAACCAAATGAATTTTTGTCATGCAACAAAAGTTATTATAAAGC
AAGCAGCAATAAAAATTATAAGTCGCCTCTATTCTGATTCTGTAGAAACT
CTAGCTGAGTCTGAAGTCAAAATAACGGTAACAAGGTGTCAAGCGAAGTT
AAAGTGAGCGTTGAAAAGACTGCGTATGACGAACTAAGAGAGTGTTAGTT
CATTTACAATGGCGGCATCCACATATCAATCAAATTTTGAGAAAGAATTT
AAGCTGAGTGAAGCCAATGAAAAAAGAAAAACATCGTTGGATCATTGCTA
TCGGACTCTTTTGACTATTAGCCCCACATCTACTACGCCAGAGCAAGTAT
TTTCAGTTGCTGGTAATATTATCACAAAACTTCGCAGTCAACTAGATCCA
AAAACTCTAAATGCATTAGTATTTTTAAAATATTACTTTGCTTGTAATAA
ATAAATGAGTAAATAAATCATTAAAAAAAGTAATATAAAATAGATTTTTT
ATTTTTGATATTTTATGAAAATGGAAATATAATTTGGGTTACCCGAGTAA
TTGAATAAAAATTACTCCACTACCTGGGTTGTGGTTTTAATCGGTTATTT
GCACACTCTAAACTTATCTTTATCGAAAACAAGCCTTACTATAGTCCCAA
AATTTTCATTCAGTCTGTGGGCAGATTAGCGGAATTTGGTAAAAATTGTT
TTTGGCCTTCTTTATCTAACTTTATTTCAGAAGGCAGCCATTTTAAAGCA
TCATCAAGATTAACCATTTGGTAAGAAAATCGAATTTTTGTGTGTTCTAT
CAATTCAGCCATAATAAAGTCCCTCATTTTGGTGTCCTTTGAGTTTAGTA
ATTTTATTAGATGGGCTACGCTCTGTATAAGGTATTCGTCAATGCTCAGG
GTAATGCCTAGGTCTCCAAGTTTAGGGTGAATTTATATAAAGTTATTATT
CATGTTTTGGTGTATGTTCCCTAGCATATTTTTAAACAATCTTTTTATTT
TCTGATCATATCCCAGTTGTTTTTTTCTATGTTGAACAACTTTATTCCTA
TTATTGTCTATGACCATGTGGTTAATATTACTGTTTCTGAATGGGAAGAT
CATTCTAGAGTGGATGAATGTCTTAAACACTTGAAGTTTTTGTACAGGAT
GTATATGGGAAGTGATCATTTTAGTTGTTTCGTTAAGAACAAGGTAGAGA
AGATCAACTTCTAGATATTTATATTATTTTCATTGATTATTGGTATGTTT
TCACCATAGAGTGTGACAGAAGTGCTTGTATTGTTTCTCTTAAGCTGGAA
GTAGCCAAAGTTGCTGGGTTTGAATTTTAGCGTTGCAGAGTCTGTATATT
TTGTTAAGCATTTGCTTTATTTTACTTCTAGTGTCAGAGATGAGGACAAG
GTGATCGGCGTACGCCATAATACTAGTGTTGTGACCATTAATAATCAGTG
GGTGGTCAGAAAGAATATTTTTAGGATAAAGTCAATAGAAAGGTTAAAGA
GTAGCATGGACATGGGCATCCTTGTTTCAAGCATTTGTTAACCGTTTGGG
ACGGGCGTCATGGTTGAAGTTTTTTCTGATGTTTGCTTCGTTTGCTCGTT
TAAGGTGATTTTCGTCGTTCATTTGTTATATTAAAGAAGTTGAGAGGGGG
TTATATATGATTATTACTGTGTAAACGTGTCAATGAGTCATTTCGACGAT
TTTAATTCATTATTTGCAGAATGTATTAATGCGATTTATTAACCGACTAG
TTGCGCCATCGGTTAGATTTATTAACAATTTCATTTCATTAGTGATTCAT
TTGATGTATTTGTATATTGTGTTGGTTCACCATTGGAGGGAACGTTCCAA
TTATACTGTGGATAATTGTCTCCAGTTGAAATTATTTGGACTTTGGATTT
CGAATACTGTTGACAGACTACTGATTATTCTTTAGTGAGTTACAGTGTTT
ATCTTTTGTGTGTGCTTGTAACTTTACGAATTTGATTATTTCTTATGTTT
TTTGTACTTATATTGGTGTCGTCCAATGTTATCTAACCTGATTCAGACAT
CACCGGTGTGTGGACATTTGCATGATTAGTTTTATTTGCAGATCATTTCT
CCTTATTAGTGGCATCTTCAAAGGTTTCGAACTCGTGGTTCTCGGGTGTT
TAATGACTCGGTTTATTTAATATTTCAATGTTGGCAGAGCCTAATAACTG
TTTCATTATCTCACTCCTTGTGCAAGTCCTCGGCGACTTGGGTGGGCTTG
TTACTTAATCGAATAATGATTCAATCGCTTTTGACATTAGATCTCCCACA
CTGGTCATGTCGCAAGTCTCAAGGTGAAATGATCTGCTTTCAGTTGTATT
ATCCAGCGAATTCTGGTTTAATTCTCAAGGTGGTTGTCAGATCTCTTTGG
ATCGTCGACTGGTTCGATTATAGTTCCGAGACATGCATGGGGTCCTTGTA
GTGTGCACAATACGTGAGCTACAAGTAGTAATTGGGCGACATTTATCTGT
TTTATTGCCAGATCCTTGGACTTTTGTCGGTTGGCTGAATTCTACTCCGA
GCTTTAGTGTTCCTATGAGAGCCTTGGAATTTCCTATCCTATGTTTATGT
GTTGCATGTTATTATATCGGTTATGACTAAATCAATGTTTCTTGTAACTA
TTGTTGTTACTATGCCTATTATAATTACTATTATGGTTATTCTACTCGTT
GTAGCCGGACAAAATGTCATTGGTCAAAATATCACGGAGAAAATTTCAAC
ATTGAAAATAATAAATAGTGCAAAAAATAGCATATAAATATATAAAAAAG
TGCAAATTTAATGATATAATTATCTGCTATAGTACTAAAAATCAAACAAC
TAGCGAAAAATAACGTGTAAAGCATTTAAATTAAAAAAATGCTAGTTGAC
CTAATAAAACCAATAACTGTAGTAGCGAGGGATTAAAACATAAACACATT
AAATAAAAAATAATTTGTTAAATAAATTTACTAAGCTAAGCAAGTTTCGA
TTGTTTTTATATGAAAGACGTTGTCATATTATTTTACACTACATAACATT
GATATTGATATTATTATTTCTAAAATTTATAACCATTGAAAGCAAATACT
ATAGCTGCTAGCAAAAAATTATAAAACTTGGTAACATGAAGGTTATGTGC
TTTTTTTTCTATTTGTTTTTTCAATGTTAACATTTTGTCCTAGAACCCTG
GCTTTCATTAATGAATAGTTTTCTTTAAAAGTAATCATCGATATATAAGA
ATTAATTTATAAACAATATTTTTTAATAAATAATCGAAGAAAGAAGGCAA
AGTTTTAACAATTGAAAAACACCAACTATATATTCTATGTAACATTTCAC
TATATATTTCGATCAGTTCTTCAGGCTAGAAATCGCATTAACAATAACTA
AATGAAAAAAGAAAATTTAAACAAATTAATCACTAATAATCGTGATCCAA
ATGTGCCAGAAAATATAAAACTATTTTAATTTTAAGAAAATAAACTTGTA
AATTAATTTTTAAAAATTAAACTTAAAATTCTTTTTACATAATAAAATCA
TTTTAACATCCCAAAATATTACATAACATACGCTCGATTACATAATATTC
AC
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008906HATC_C_dom
IPR012337RNaseH-like_sf
Vocabulary: molecular function
TermDefinition
GO:0046983protein dimerization activity
GO:0003676nucleic acid binding