hypothetical protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30026807 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 11
Homology
BLAST of hypothetical protein vs. TrEMBL
Match: I1ZIC2 (Uncharacterized protein OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 539.65 bits (1389), Expect = 0.000e+0 Identity = 267/272 (98.16%), Postives = 268/272 (98.53%), Query Frame = 2 Query: 104 MGHTILARELREAMKEQYSIDHVVELQLIVAVLLENGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNRRLVSNEIKGVKEPLKQKFLQVEKALINLLECRNCKHPSLKFDFEIYEKEIYKHLSTKKNLDHIVEFQIIADVLAKNDIKNIQVAAKFAKYFNKDWNFKIIPREENSNKGTIVKNWLKSDLRTKPGVINAISQTYQSNRETVKFFIKNDNSLNQSERDLFIKVEI 919 MGHTILARELREAMKEQYSIDHVVELQLIVAVLLENGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNR LVSNEIKGVKEPLKQKFLQVEKALINLLECRNCKHPSLKFDFEIYEKEIYKHLSTK NLDHIVEFQIIADVLAKNDIKNI VAAKFAKYFNKDWNFKIIPREEN NKG+IVKNWLKSDLRTKPGVINAISQTYQSNRETVKFFIKNDNSLNQSERDLFIKVEI Sbjct: 1 MGHTILARELREAMKEQYSIDHVVELQLIVAVLLENGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNRTLVSNEIKGVKEPLKQKFLQVEKALINLLECRNCKHPSLKFDFEIYEKEIYKHLSTKNNLDHIVEFQIIADVLAKNDIKNIDVAAKFAKYFNKDWNFKIIPREENYNKGSIVKNWLKSDLRTKPGVINAISQTYQSNRETVKFFIKNDNSLNQSERDLFIKVEI 272 HSP 2 Score: 64.3142 bits (155), Expect = 6.347e-8 Identity = 47/141 (33.33%), Postives = 75/141 (53.19%), Query Frame = 2 Query: 101 KMGHTILARELREAMKEQYSIDHVVELQLIVAVLLENGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNRRLVSNEIK---GVKEPLKQKFLQVEKALINLL 514 K I +E+ + + + ++DH+VE Q+I VL +N I K I++A +F YFNK+WN + PR++N +K V N++K + L +P I+ I Y NR V IK + + + F++VE L NLL Sbjct: 148 KFDFEIYEKEIYKHLSTKNNLDHIVEFQIIADVLAKNDI--KNIDVAAKFAKYFNKDWNFKIIPREENYNKGSIVKNWLK---SDLRTKPG-----VINAISQTYQSNRETVKFFIKNDNSLNQSERDLFIKVEITLNNLL 278
BLAST of hypothetical protein vs. Planmine SMEST
Match: SMESG000038313.1 (SMESG000038313.1) HSP 1 Score: 544.273 bits (1401), Expect = 0.000e+0 Identity = 269/272 (98.90%), Postives = 270/272 (99.26%), Query Frame = 2 Query: 104 MGHTILARELREAMKEQYSIDHVVELQLIVAVLLENGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNRRLVSNEIKGVKEPLKQKFLQVEKALINLLECRNCKHPSLKFDFEIYEKEIYKHLSTKKNLDHIVEFQIIADVLAKNDIKNIQVAAKFAKYFNKDWNFKIIPREENSNKGTIVKNWLKSDLRTKPGVINAISQTYQSNRETVKFFIKNDNSLNQSERDLFIKVEI 919 MGHTILARELREAMKEQYSIDHVVELQLIVAVLLENGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNR LVSNEIKGVKEPLKQKFLQVEKALINLLECRNCKHPSLKFDFEIYEKEIYKHLSTK NLDHIVEFQIIADVLAKNDIKNIQVAAKFAKYFNKDWNFKIIPREENSNKG+IVKNWLKSDLRTKPGVINAISQTYQSNRETVKFFIKNDNSLNQSERDLFIKVEI Sbjct: 1 MGHTILARELREAMKEQYSIDHVVELQLIVAVLLENGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNRTLVSNEIKGVKEPLKQKFLQVEKALINLLECRNCKHPSLKFDFEIYEKEIYKHLSTKNNLDHIVEFQIIADVLAKNDIKNIQVAAKFAKYFNKDWNFKIIPREENSNKGSIVKNWLKSDLRTKPGVINAISQTYQSNRETVKFFIKNDNSLNQSERDLFIKVEI 272 HSP 2 Score: 64.6994 bits (156), Expect = 1.203e-11 Identity = 47/141 (33.33%), Postives = 75/141 (53.19%), Query Frame = 2 Query: 101 KMGHTILARELREAMKEQYSIDHVVELQLIVAVLLENGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNRRLVSNEIK---GVKEPLKQKFLQVEKALINLL 514 K I +E+ + + + ++DH+VE Q+I VL +N I K I++A +F YFNK+WN + PR++N +K V N++K + L +P I+ I Y NR V IK + + + F++VE L NLL Sbjct: 148 KFDFEIYEKEIYKHLSTKNNLDHIVEFQIIADVLAKNDI--KNIQVAAKFAKYFNKDWNFKIIPREENSNKGSIVKNWLK---SDLRTKPG-----VINAISQTYQSNRETVKFFIKNDNSLNQSERDLFIKVEITLNNLL 278
BLAST of hypothetical protein vs. Planmine SMEST
Match: SMESG000035867.1 (SMESG000035867.1) HSP 1 Score: 540.806 bits (1392), Expect = 0.000e+0 Identity = 267/272 (98.16%), Postives = 269/272 (98.90%), Query Frame = 2 Query: 104 MGHTILARELREAMKEQYSIDHVVELQLIVAVLLENGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNRRLVSNEIKGVKEPLKQKFLQVEKALINLLECRNCKHPSLKFDFEIYEKEIYKHLSTKKNLDHIVEFQIIADVLAKNDIKNIQVAAKFAKYFNKDWNFKIIPREENSNKGTIVKNWLKSDLRTKPGVINAISQTYQSNRETVKFFIKNDNSLNQSERDLFIKVEI 919 MGHTILARELREAMKEQYSIDHVVELQLIVAVLLE+GIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNR LVSNEIKGVKEPLKQKFLQVEKALINLLECRNCKHPSLKFDFEIYEKEIYKHLSTKKNLDHIVEFQIIADVLAKNDIKNI VAAKFAKYFNKDWNFKIIPREENSNKG+IVKNWLKSDLRTKPGVINAISQTYQSNRETVKFFIKNDNSLNQSERDLF KVEI Sbjct: 1 MGHTILARELREAMKEQYSIDHVVELQLIVAVLLESGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNRTLVSNEIKGVKEPLKQKFLQVEKALINLLECRNCKHPSLKFDFEIYEKEIYKHLSTKKNLDHIVEFQIIADVLAKNDIKNIDVAAKFAKYFNKDWNFKIIPREENSNKGSIVKNWLKSDLRTKPGVINAISQTYQSNRETVKFFIKNDNSLNQSERDLFFKVEI 272 HSP 2 Score: 64.6994 bits (156), Expect = 1.437e-11 Identity = 47/141 (33.33%), Postives = 74/141 (52.48%), Query Frame = 2 Query: 101 KMGHTILARELREAMKEQYSIDHVVELQLIVAVLLENGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNRRLVSNEIK---GVKEPLKQKFLQVEKALINLL 514 K I +E+ + + + ++DH+VE Q+I VL +N I K I++A +F YFNK+WN + PR++N +K V N++K + L +P I+ I Y NR V IK + + + F +VE L NLL Sbjct: 148 KFDFEIYEKEIYKHLSTKKNLDHIVEFQIIADVLAKNDI--KNIDVAAKFAKYFNKDWNFKIIPREENSNKGSIVKNWLK---SDLRTKPG-----VINAISQTYQSNRETVKFFIKNDNSLNQSERDLFFKVEITLNNLL 278
BLAST of hypothetical protein vs. Planmine SMEST
Match: SMESG000035859.1 (SMESG000035859.1) HSP 1 Score: 538.11 bits (1385), Expect = 0.000e+0 Identity = 266/272 (97.79%), Postives = 267/272 (98.16%), Query Frame = 2 Query: 104 MGHTILARELREAMKEQYSIDHVVELQLIVAVLLENGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNRRLVSNEIKGVKEPLKQKFLQVEKALINLLECRNCKHPSLKFDFEIYEKEIYKHLSTKKNLDHIVEFQIIADVLAKNDIKNIQVAAKFAKYFNKDWNFKIIPREENSNKGTIVKNWLKSDLRTKPGVINAISQTYQSNRETVKFFIKNDNSLNQSERDLFIKVEI 919 MGHTILARELREAMKEQYSIDHVVELQLIVAVLLENGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNR LVSNEIKGVKEPLKQKFLQVEKALINLLECRNCKHPSLKFDFEIYEKEIYKHLSTK NLDHIVEFQIIADVLAKNDIKNI VAAKFAKYFNKDWNFKIIPREEN NKG+IVKNWLKSDLRTKPGVINAISQTYQSNRETVKFFIKNDNSLNQSERDLF KVEI Sbjct: 1 MGHTILARELREAMKEQYSIDHVVELQLIVAVLLENGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNRTLVSNEIKGVKEPLKQKFLQVEKALINLLECRNCKHPSLKFDFEIYEKEIYKHLSTKNNLDHIVEFQIIADVLAKNDIKNIDVAAKFAKYFNKDWNFKIIPREENYNKGSIVKNWLKSDLRTKPGVINAISQTYQSNRETVKFFIKNDNSLNQSERDLFFKVEI 272 HSP 2 Score: 63.929 bits (154), Expect = 2.168e-11 Identity = 47/141 (33.33%), Postives = 74/141 (52.48%), Query Frame = 2 Query: 101 KMGHTILARELREAMKEQYSIDHVVELQLIVAVLLENGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNRRLVSNEIK---GVKEPLKQKFLQVEKALINLL 514 K I +E+ + + + ++DH+VE Q+I VL +N I K I++A +F YFNK+WN + PR++N +K V N++K + L +P I+ I Y NR V IK + + + F +VE L NLL Sbjct: 148 KFDFEIYEKEIYKHLSTKNNLDHIVEFQIIADVLAKNDI--KNIDVAAKFAKYFNKDWNFKIIPREENYNKGSIVKNWLK---SDLRTKPG-----VINAISQTYQSNRETVKFFIKNDNSLNQSERDLFFKVEITLNNLL 278
BLAST of hypothetical protein vs. Planmine SMEST
Match: SMESG000038300.1 (SMESG000038300.1) HSP 1 Score: 537.724 bits (1384), Expect = 0.000e+0 Identity = 266/272 (97.79%), Postives = 267/272 (98.16%), Query Frame = 2 Query: 104 MGHTILARELREAMKEQYSIDHVVELQLIVAVLLENGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNRRLVSNEIKGVKEPLKQKFLQVEKALINLLECRNCKHPSLKFDFEIYEKEIYKHLSTKKNLDHIVEFQIIADVLAKNDIKNIQVAAKFAKYFNKDWNFKIIPREENSNKGTIVKNWLKSDLRTKPGVINAISQTYQSNRETVKFFIKNDNSLNQSERDLFIKVEI 919 MGHTILARELREAMKEQYSIDHVVELQLIVAVLLENGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNR LVSNEIKGVKEPLKQKFLQVEKALINLLECRNCKHPSLKFDFEIYEKEIYKHLSTKKNLDHIVEFQIIADVLAKNDIKNI VAAKFAKYFNKDWNFKIIPREEN NKG+IVKNWLKSDLRTKPGVIN ISQTYQSNRETVKFFIKNDNSLNQSERDLF KVEI Sbjct: 1 MGHTILARELREAMKEQYSIDHVVELQLIVAVLLENGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNRTLVSNEIKGVKEPLKQKFLQVEKALINLLECRNCKHPSLKFDFEIYEKEIYKHLSTKKNLDHIVEFQIIADVLAKNDIKNIDVAAKFAKYFNKDWNFKIIPREENYNKGSIVKNWLKSDLRTKPGVINVISQTYQSNRETVKFFIKNDNSLNQSERDLFFKVEI 272 HSP 2 Score: 63.1586 bits (152), Expect = 3.905e-11 Identity = 47/141 (33.33%), Postives = 74/141 (52.48%), Query Frame = 2 Query: 101 KMGHTILARELREAMKEQYSIDHVVELQLIVAVLLENGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNRRLVSNEIK---GVKEPLKQKFLQVEKALINLL 514 K I +E+ + + + ++DH+VE Q+I VL +N I K I++A +F YFNK+WN + PR++N +K V N++K + L +P I+ I Y NR V IK + + + F +VE L NLL Sbjct: 148 KFDFEIYEKEIYKHLSTKKNLDHIVEFQIIADVLAKNDI--KNIDVAAKFAKYFNKDWNFKIIPREENYNKGSIVKNWLK---SDLRTKPG-----VINVISQTYQSNRETVKFFIKNDNSLNQSERDLFFKVEITLNNLL 278
BLAST of hypothetical protein vs. Planmine SMEST
Match: SMESG000038304.1 (SMESG000038304.1) HSP 1 Score: 534.643 bits (1376), Expect = 0.000e+0 Identity = 265/272 (97.43%), Postives = 267/272 (98.16%), Query Frame = 2 Query: 104 MGHTILARELREAMKEQYSIDHVVELQLIVAVLLENGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNRRLVSNEIKGVKEPLKQKFLQVEKALINLLECRNCKHPSLKFDFEIYEKEIYKHLSTKKNLDHIVEFQIIADVLAKNDIKNIQVAAKFAKYFNKDWNFKIIPREENSNKGTIVKNWLKSDLRTKPGVINAISQTYQSNRETVKFFIKNDNSLNQSERDLFIKVEI 919 MGHTILARELREAMKEQYSIDHVVELQLIVAVLLE+GIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNR LVSNEIKGVKEPLKQKFLQVEKALINLLECRNCKHPSLKFDFEIYEKEIYKHLSTK NLDHIVEFQIIA VLAKNDIKNIQVAAKFAKYFNKDWNFKIIPREENSNKG+IVKNWLKSDLRTKPGVIN IS TYQSNRETVKFFIKNDNSLNQSERDLFIKVEI Sbjct: 1 MGHTILARELREAMKEQYSIDHVVELQLIVAVLLESGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNRTLVSNEIKGVKEPLKQKFLQVEKALINLLECRNCKHPSLKFDFEIYEKEIYKHLSTKNNLDHIVEFQIIAYVLAKNDIKNIQVAAKFAKYFNKDWNFKIIPREENSNKGSIVKNWLKSDLRTKPGVINVISLTYQSNRETVKFFIKNDNSLNQSERDLFIKVEI 272 HSP 2 Score: 63.1586 bits (152), Expect = 4.706e-11 Identity = 47/141 (33.33%), Postives = 75/141 (53.19%), Query Frame = 2 Query: 101 KMGHTILARELREAMKEQYSIDHVVELQLIVAVLLENGIDEKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNRRLVSNEIK---GVKEPLKQKFLQVEKALINLL 514 K I +E+ + + + ++DH+VE Q+I VL +N I K I++A +F YFNK+WN + PR++N +K V N++K + L +P I+ I Y NR V IK + + + F++VE L NLL Sbjct: 148 KFDFEIYEKEIYKHLSTKNNLDHIVEFQIIAYVLAKNDI--KNIQVAAKFAKYFNKDWNFKIIPREENSNKGSIVKNWLK---SDLRTKPG-----VINVISLTYQSNRETVKFFIKNDNSLNQSERDLFIKVEITLNNLL 278 The following BLAST results are available for this feature:
BLAST of hypothetical protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of hypothetical protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of hypothetical protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of hypothetical protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of hypothetical protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of hypothetical protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of hypothetical protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of hypothetical protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 1
BLAST of hypothetical protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of hypothetical protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of hypothetical protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of hypothetical protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of hypothetical protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of hypothetical protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Cross References
External references for this transcript
Sequences
The following sequences are available for this feature:
transcript sequence >SMED30026807 ID=SMED30026807|Name=hypothetical protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1035bpback to top protein sequence of SMED30026807-orf-1 >SMED30026807-orf-1 ID=SMED30026807-orf-1|Name=SMED30026807-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=281bp MGHTILARELREAMKEQYSIDHVVELQLIVAVLLENGIDEKQIEIATEFTback to top Annotated Terms
The following terms have been associated with this transcript:
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