SMED30026702

Overview
NameSMED30026702
Smed IDSMED30026702
Length (bp)2764
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30026702 (SMED30026702) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30026702 (SMED30026702) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30026702 (SMED30026702) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30026702 (SMED30026702) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30026702

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30026702h1SMcG0005824 PL05003B1F12smed_ncbi_20240424PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
pharynxSMED30026702h1SMcG0005824 dd_Smed_v4_1931_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30026702h1SMcG0005824 dd_Smed_v4_1931_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30026702h1SMcG0005824 dd_Smed_v4_1931_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30026702h1SMcG0005824 dd_Smed_v4_1931_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30026702 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.006122:18649..32930 +13431
v31.008223:3715..18049 -12888
Homology
[Close]
BLAST of SMED30026702 vs. Planmine SMEST
Match: SMESG000038479.1 (SMESG000038479.1)

HSP 1 Score: 1126.31 bits (2912), Expect = 0.000e+0
Identity = 593/608 (97.53%), Postives = 600/608 (98.68%), Query Frame = 3 
Query:   27 MSESLTFDGFVILDDDVTHXXXXXXXXXXXXXXGKTGVTNIKNTPNLTNVTNDLFYKVDNLKGHDSNTIIDVVECDSTTPTSLEKVXXXXXXXXXXXXXXAFPSYPVTLIDSYMCNVNESTNEIENTMNNVVKAAESVPCDNFNIVLLTNALNEHDELHRNDIPLEEISEKDSMTTMENHGSSSIVKSSNEMNTNLDVGIDSGEDRTDFRINILDRNDEENKWSTNQYIQQDNEENKCTMKEEISESLKEVKNQENVESIDMVNKLSSEGEENDVGIRTEKEDNWSTNQYLQDDKEETQLSQKDENIKANNEDKPDFRVNIFERNDRVDTWLTNQHIYEETEDRKSISNIENEFNPISTIDDEFECDANKTLVDAKLCISDRLTDLAEYVSDCRENPLVESDSKSGNKEDIETTENVSNLMSNQLDNDQQSPNAKENIITDGNERQSAMDVDNRKITQETPDTVPLESSDVAVSVTGGSITAVTAPPLIGVSNPINFPAMIAVISVLFNCTELRCGLIDYHHSDEIVNFDIESSTDISPEDVFFMNNLCKLFVEMKASNDEKIIEIAGLIRNYFKKKKIQLDFLNGFKYFLKVINTVTKSVVSENENF 1850
            MSESLTFDGFVILDDDVTHSILDSNSDDLYYSSGKTGVTNIKNTPNLTNVTNDLFYKVDNLKGHDSNTIIDVVECDSTTPTSLEKVELDNECNENENDNLAFPSYPVTLIDSYMCNVNESTNEIENTMNNVVKA ESVPCDNFNIVLLTNALNEHDELHRNDIPLEEISEKDSMTTMENHGSSSIVKSSNEMNTNLDVGIDSGEDRTDFRINILDRNDEENKWSTNQYIQQDNEENKCT+KEEISESLKEVK+QENVESID+VNKLSSE EEND+GIRTEKEDNWSTNQYLQDDKEETQLSQKDENIKANNEDKPDFRVNI ERNDRVDTWLTNQHIYEETEDRKSISNIENEFNPIST+DDEFECDANK LVDAKLCISDRLTDLAEYVSDCRENPLVESDSKSGNKEDIETTENVSNLMSNQLDNDQQSPNAKENIITDGNERQSA+ VDNRKITQETPDTVPLESSDVAVSVTGGSITAVTAPPLIGVSNPINFPAMIAVISVLFNCTELRCGLIDYHHSDEIVNFDIESSTDIS EDVFFMNNLCKLFVEMKASNDEKIIEIAGLIRNYFKKKKIQLDFLNGF YFLKVINTVTKSVVSENE +
Sbjct:    1 MSESLTFDGFVILDDDVTHSILDSNSDDLYYSSGKTGVTNIKNTPNLTNVTNDLFYKVDNLKGHDSNTIIDVVECDSTTPTSLEKVELDNECNENENDNLAFPSYPVTLIDSYMCNVNESTNEIENTMNNVVKATESVPCDNFNIVLLTNALNEHDELHRNDIPLEEISEKDSMTTMENHGSSSIVKSSNEMNTNLDVGIDSGEDRTDFRINILDRNDEENKWSTNQYIQQDNEENKCTIKEEISESLKEVKDQENVESIDIVNKLSSEREENDMGIRTEKEDNWSTNQYLQDDKEETQLSQKDENIKANNEDKPDFRVNILERNDRVDTWLTNQHIYEETEDRKSISNIENEFNPISTVDDEFECDANKILVDAKLCISDRLTDLAEYVSDCRENPLVESDSKSGNKEDIETTENVSNLMSNQLDNDQQSPNAKENIITDGNERQSAIYVDNRKITQETPDTVPLESSDVAVSVTGGSITAVTAPPLIGVSNPINFPAMIAVISVLFNCTELRCGLIDYHHSDEIVNFDIESSTDISLEDVFFMNNLCKLFVEMKASNDEKIIEIAGLIRNYFKKKKIQLDFLNGFNYFLKVINTVTKSVVSENEKY 608
[Close]
BLAST of SMED30026702 vs. Planmine SMEST
Match: SMESG000038478.1 (SMESG000038478.1)

HSP 1 Score: 136.346 bits (342), Expect = 5.495e-38
Identity = 66/71 (92.96%), Postives = 69/71 (97.18%), Query Frame = 3 
Query: 2226 GVFLNSKQGAVLYSLRSVIDEILMNNTAFNSVKCLSDFWYMIESKSVKQIGELELINEYNVGFMFKKLQDY 2438
            G+ + +KQGAVLYSLRSVIDEILMNNTAFNSVKCLSDFWYMIESKSVKQIGELELINEYNVGFMFKKLQDY
Sbjct:    2 GICIIAKQGAVLYSLRSVIDEILMNNTAFNSVKCLSDFWYMIESKSVKQIGELELINEYNVGFMFKKLQDY 72
[Close]
BLAST of SMED30026702 vs. Planmine SMEST
Match: SMESG000038532.1 (SMESG000038532.1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.021e-20
Identity = 72/234 (30.77%), Postives = 122/234 (52.14%), Query Frame = 3 
Query: 1491 IGVSNPINFPAMIAVISVLFNCTELRCGLIDYHHSDEIVNFDIESSTDISPEDVFFMNNLCKLFVEMKASNDEKIIEIAGLIRNYFKKKKIQLDFLNGFKYFLKVINTVTK-SVVSENENFKDTD-DIMFDKFTSKNKGFVTDSFCGQIKHKSFCKNCQKIYSEEYEQTYXXXXXXXXXXXXXXXXXCIQSYLSDVKIEITKDHKC-CNNPSI--WANKEFTHTPDYLILCIDR 2177
            IG  NP  F  +  VI  L++CTE +  LI YH  D I     +S+   S +D  F+NN  KL  E+   ND KI E+   I+ YF +     D L  F   L +++ VTK  +++ N + +  + ++ F+ F ++N GFV  SF GQ+  +  C +C+   +  Y+   S+ L +P  + ++ L++ I  +L +  +E+     C C + S+   +  E+TH P YL + ++R
Sbjct:  895 IGFENPKGFCFLNCVIQQLYSCTEFKDDLIQYHRGDSIAT--DQSNPQASDDDKIFVNNFSKLMEEINNRNDRKIRELVSEIQKYFIESSSGDDVLKCFMTVLTILSNVTKVKILNRNNSIQYINSEVSFENFKNQNNGFVFRSFYGQMALRLVCVHCKYSVNTSYQLFKSVALPVPETRSTIRLDEIINGFLQESPVEMDDKRNCKCPDGSLNFLSITEYTHMPRYLHIYLNR 1126
[Close]
BLAST of SMED30026702 vs. Planmine SMEST
Match: SMESG000038532.1 (SMESG000038532.1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.640e-20
Identity = 80/293 (27.30%), Postives = 139/293 (47.44%), Query Frame = 3 
Query: 1383 NRKITQETPDTVPLESSDVAVSVT------------GGSITAVTAPPL-----------IGVSNPINFPAMIAVISVLFNCTELRCGLIDYHHSDEIVNFDIESSTDISPEDVFFMNNLCKLFVEMKASNDEKIIEIAGLIRNYFKKKKIQLDFLNGFKYFLKVINTVTK-SVVSENENFKDTD-DIMFDKFTSKNKGFVTDSFCGQIKHKSFCKNCQKIYSEEYEQTYXXXXXXXXXXXXXXXXXCIQSYLSDVKIEITKDHKC-CNNPSI--WANKEFTHTPDYLILCIDR 2177
            N++  +E  + V +ES+ +  S++            G         P            IG  NP  F  +  VI  L++CTE +  LI YH  D I     +S+   S +D  F+NN  KL  E+   ND KI E+   I+ YF +     D L  F   L +++ VTK  +++ N + +  + ++ F+ F ++N GFV  SF GQ+  +  C +C+   +  Y+   S+ L +P  + ++ L++ I  +L +  +E+     C C + S+   +  E+TH P YL + ++R
Sbjct:  845 NKRFMKENDNVVRIESNSIGRSMSNLEVKRRDRRSFGSESNMSNVTPYNYQNNNILRDPIGFENPKGFCFLNCVIQQLYSCTEFKDDLIQYHRGDSIAT--DQSNPQASDDDKIFVNNFSKLMEEINNRNDRKIRELVSEIQKYFIESSSGDDVLKCFMTVLTILSNVTKVKILNRNNSIQYINSEVSFENFKNQNNGFVFRSFYGQMALRLVCVHCKYSVNTSYQLFKSVALPVPETRSTIRLDEIINGFLQESPVEMDDKRNCKCPDGSLNFLSITEYTHMPRYLHIYLNR 1135
[Close]
BLAST of SMED30026702 vs. Planmine SMEST
Match: SMESG000038532.1 (SMESG000038532.1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.562e-17
Identity = 70/234 (29.91%), Postives = 119/234 (50.85%), Query Frame = 3 
Query: 1491 IGVSNPINFPAMIAVISVLFNCTELRCGLIDYHHSDEIVNFDIESSTDISPEDVFFMNNLCKLFVEMKASNDEKIIEIAGLIRNYFKKKKIQLDFLNGFKYFLKVINTVTK-SVVSENENFKDTD-DIMFDKFTSKNKGFVTDSFCGQIKHKSFCKNCQKIYSEEYEQTYXXXXXXXXXXXXXXXXXCIQSYLSDVKIEITKDHKC-CNNPSI--WANKEFTHTPDYLILCIDR 2177
            IG  NP  F         L++CTE +  LI YH  D I     +S+   S +D  F+NN  KL  E+   ND KI E+   I+ YF +     D L  F   L +++ VTK  +++ N + +  + ++ F+ F ++N GFV  SF GQ+  +  C +C+   +  Y+   S+ L +P  + ++ L++ I  +L +  +E+     C C + S+   +  E+TH P YL + ++R
Sbjct:  895 IGFENPKGFQ--------LYSCTEFKDDLIQYHRGDSIAT--DQSNPQASDDDKIFVNNFSKLMEEINNRNDRKIRELVSEIQKYFIESSSGDDVLKCFMTVLTILSNVTKVKILNRNNSIQYINSEVSFENFKNQNNGFVFRSFYGQMALRLVCVHCKYSVNTSYQLFKSVALPVPETRSTIRLDEIINGFLQESPVEMDDKRNCKCPDGSLNFLSITEYTHMPRYLHIYLNR 1118
The following BLAST results are available for this feature:
BLAST of SMED30026702 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026702 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026702 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026702 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026702 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026702 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026702 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026702 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026702 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026702 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026702 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026702 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026702 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026702 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000038479.10.000e+097.53SMESG000038479.1[more]
SMESG000038478.15.495e-3892.96SMESG000038478.1[more]
SMESG000038532.16.021e-2030.77SMESG000038532.1[more]
SMESG000038532.16.640e-2027.30SMESG000038532.1[more]
SMESG000038532.11.562e-1729.91SMESG000038532.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30026702 ID=SMED30026702|Name=SMED30026702|organism=Schmidtea mediterranea sexual|type=transcript|length=2764bp
ATATAAATCTTATATGAAAATTTAAAATGTCAGAAAGTTTGACTTTTGAT
GGATTTGTAATACTTGATGATGATGTAACTCATAGCATATTAGATTCAAA
TTCTGATGATTTATATTATTCCTCTGGAAAAACTGGTGTTACTAATATTA
AAAATACTCCAAATCTAACTAATGTCACTAATGACTTATTTTATAAGGTG
GATAATTTAAAAGGCCATGATTCAAATACTATTATAGATGTTGTTGAATG
TGATAGTACAACTCCAACCAGTTTGGAAAAAGTTGAGTTGGATAATGAAT
GTAATGAAAATGAGAATGATAATTTGGCATTTCCAAGTTATCCTGTTACA
TTAATTGATTCTTATATGTGTAACGTAAATGAAAGCACAAATGAAATTGA
AAATACAATGAACAATGTAGTAAAAGCAGCTGAAAGTGTTCCTTGTGATA
ATTTTAATATAGTTTTACTAACAAATGCTTTAAATGAGCACGATGAGCTT
CACCGAAATGATATACCATTGGAAGAAATTTCTGAAAAAGATAGTATGAC
AACTATGGAAAACCATGGCTCTTCAAGTATTGTAAAAAGTTCTAATGAAA
TGAATACAAATTTAGATGTAGGCATAGATAGCGGAGAGGATAGAACGGAT
TTCAGAATAAATATATTGGATAGAAATGATGAAGAAAACAAATGGTCAAC
AAATCAGTATATTCAACAGGATAACGAAGAAAATAAATGTACAATGAAAG
AAGAAATTAGTGAAAGTCTGAAGGAAGTGAAAAACCAAGAAAATGTAGAA
AGTATTGATATGGTGAACAAATTATCATCTGAAGGCGAAGAAAACGATGT
GGGAATTAGAACTGAGAAAGAAGACAATTGGTCGACAAATCAGTATTTAC
AGGATGACAAAGAAGAAACACAATTGTCGCAGAAAGATGAAAACATCAAG
GCTAATAATGAAGATAAACCTGATTTCAGAGTGAATATTTTCGAACGTAA
CGACAGAGTGGACACGTGGTTGACTAATCAGCATATCTATGAGGAAACTG
AAGATCGAAAGTCAATATCAAACATTGAGAATGAATTTAATCCAATTTCC
ACTATTGATGACGAATTTGAATGCGATGCTAATAAAACACTTGTTGATGC
GAAATTGTGCATTTCCGATCGATTAACTGATCTGGCGGAGTACGTTTCCG
ATTGTCGAGAAAATCCGTTGGTAGAGTCAGATAGTAAATCTGGGAACAAG
GAGGATATCGAAACCACTGAAAATGTGTCGAACCTGATGAGTAATCAACT
TGATAACGATCAGCAGTCACCGAATGCGAAGGAGAACATTATCACTGATG
GGAATGAACGGCAATCGGCAATGGATGTGGACAACCGCAAAATCACCCAG
GAAACTCCTGATACGGTCCCACTAGAAAGTTCCGACGTGGCTGTATCTGT
CACTGGCGGGTCGATAACGGCTGTCACCGCCCCACCGCTAATTGGCGTAT
CAAATCCAATCAATTTCCCCGCTATGATTGCGGTCATCAGTGTTTTGTTT
AATTGCACTGAATTGAGGTGCGGACTGATTGATTATCACCATAGCGATGA
GATTGTCAATTTCGATATCGAATCCAGCACCGACATCTCACCTGAAGATG
TCTTCTTCATGAATAATTTGTGCAAATTGTTTGTAGAAATGAAAGCATCT
AATGACGAAAAAATAATAGAAATTGCAGGCCTCATCAGAAATTATTTCAA
AAAGAAAAAAATTCAATTGGATTTCTTAAATGGATTTAAGTATTTCTTGA
AAGTAATCAATACAGTTACGAAATCAGTCGTTTCTGAAAATGAAAATTTC
AAAGACACAGATGATATAATGTTTGATAAATTTACATCTAAAAATAAAGG
ATTCGTCACAGATTCTTTTTGTGGTCAAATAAAACATAAATCATTCTGTA
AGAACTGCCAAAAAATATATTCAGAAGAATATGAGCAAACTTATAGCCTG
TTTCTAAAGCTTCCTCTTGAAAAGAAATCATTGTCATTGGAAAAATGTAT
CCAAAGCTATTTGTCAGATGTAAAAATTGAAATAACTAAAGATCACAAAT
GTTGTAATAATCCATCAATATGGGCAAATAAGGAATTTACACATACTCCA
GATTATTTGATTTTGTGCATCGATCGAAATTTGGAAAATCAGCGAAGAGA
TCGCACTTTTATAGAAACTGACACTGGAGTTTTTTTAAATTCTAAACAGG
GAGCGGTCTTATATTCTCTCCGCTCAGTAATTGATGAAATACTTATGAAT
AATACGGCTTTCAACAGTGTCAAATGTCTGTCAGATTTTTGGTATATGAT
CGAATCCAAAAGCGTCAAACAAATTGGAGAACTCGAGCTCATCAATGAGT
ATAATGTCGGATTTATGTTTAAAAAACTTCAAGATTATTAACTGCTTACA
TTTTTATAAATCATTATTATTCAGTTTGCTCTTTTCCAAAATATTTTTAT
ATTTCAAATTTTAAGCCATTTGATTGGTCGTTTTGCATAGAATAATAGAT
ATCATGTTTGATTCCATCCATTGACATGCATTAGCGCATCCGGTATTCAT
TTAACACTTGGTGATTGGCATTGTATTTATAAATTGGAAATTAAATGTGC
TTGGTTTTGAATATTATAAACTGTGAAATTTCATTTTGGAAACTTTACTT
TCTATTATTTTATGGATAAATTTTGTGATTTAATATTTTTGAATTATTTT
GTAATAATATTGAT
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protein sequence of SMED30026702-orf-1

>SMED30026702-orf-1 ID=SMED30026702-orf-1|Name=SMED30026702-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=805bp
MSESLTFDGFVILDDDVTHSILDSNSDDLYYSSGKTGVTNIKNTPNLTNV
TNDLFYKVDNLKGHDSNTIIDVVECDSTTPTSLEKVELDNECNENENDNL
AFPSYPVTLIDSYMCNVNESTNEIENTMNNVVKAAESVPCDNFNIVLLTN
ALNEHDELHRNDIPLEEISEKDSMTTMENHGSSSIVKSSNEMNTNLDVGI
DSGEDRTDFRINILDRNDEENKWSTNQYIQQDNEENKCTMKEEISESLKE
VKNQENVESIDMVNKLSSEGEENDVGIRTEKEDNWSTNQYLQDDKEETQL
SQKDENIKANNEDKPDFRVNIFERNDRVDTWLTNQHIYEETEDRKSISNI
ENEFNPISTIDDEFECDANKTLVDAKLCISDRLTDLAEYVSDCRENPLVE
SDSKSGNKEDIETTENVSNLMSNQLDNDQQSPNAKENIITDGNERQSAMD
VDNRKITQETPDTVPLESSDVAVSVTGGSITAVTAPPLIGVSNPINFPAM
IAVISVLFNCTELRCGLIDYHHSDEIVNFDIESSTDISPEDVFFMNNLCK
LFVEMKASNDEKIIEIAGLIRNYFKKKKIQLDFLNGFKYFLKVINTVTKS
VVSENENFKDTDDIMFDKFTSKNKGFVTDSFCGQIKHKSFCKNCQKIYSE
EYEQTYSLFLKLPLEKKSLSLEKCIQSYLSDVKIEITKDHKCCNNPSIWA
NKEFTHTPDYLILCIDRNLENQRRDRTFIETDTGVFLNSKQGAVLYSLRS
VIDEILMNNTAFNSVKCLSDFWYMIESKSVKQIGELELINEYNVGFMFKK
LQDY*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000070intestinal phagocyte
PLANA:0000099neuron
Vocabulary: INTERPRO
TermDefinition
IPR028889USP_dom