Pre-mRNA-splicing factor CWC21

Overview
NamePre-mRNA-splicing factor CWC21
Smed IDSMED30026656
Length (bp)2445
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Pre-mRNA-splicing factor CWC21 (SMED30026656) t-SNE clustered cells

Violin plots show distribution of expression levels for Pre-mRNA-splicing factor CWC21 (SMED30026656) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Pre-mRNA-splicing factor CWC21 (SMED30026656) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Pre-mRNA-splicing factor CWC21 (SMED30026656) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30026656

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 10

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
neoblastSMED30026656SMESG000056252.1 dd_Smed_v4_3805_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30026656SMESG000056252.1 dd_Smed_v4_3805_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30026656SMESG000056252.1 dd_Smed_v4_3805_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30026656SMESG000056252.1 dd_Smed_v4_4340_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30026656SMESG000056252.1 dd_Smed_v4_4340_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30026656SMESG000056252.1 dd_Smed_v4_4340_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30026656SMESG000056252.1 dd_Smed_v4_4340_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30026656SMESG000056252.1 dd_Smed_v4_4340_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30026656SMESG000039707.1 SMESG000033113.1 Contig5131GPL15192PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30026656SMESG000056252.1 Contig5131GPL15192PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Human
Match: SRRM2 (serine/arginine repetitive matrix 2 [Source:HGNC Symbol;Acc:HGNC:16639])

HSP 1 Score: 118.627 bits (296), Expect = 1.367e-26
Identity = 72/164 (43.90%), Postives = 101/164 (61.59%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKGQ--------SIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSF 497
            MYNGIGL TPRGSGTNGY+QRNL+ V  R+ E    PD KG+        ++ K+PN DIL+HERKR++EL+C+ELE++ME+QGY  + I+ KV  +R  L++K         +V     E+  G R     TH++A  N  K+++ + A  I SD   D +SF
Sbjct:    1 MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGER---PDYKGEEELRRLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEK---------DVNPGGKEETPGQRPAVTETHQLAELNEKKNERLRAAFGI-SDSYVDGSSF 151
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Human
Match: SRRM2 (serine/arginine repetitive matrix 2 [Source:HGNC Symbol;Acc:HGNC:16639])

HSP 1 Score: 101.679 bits (252), Expect = 6.572e-25
Identity = 56/104 (53.85%), Postives = 76/104 (73.08%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKGQ--------SIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDK 317
            MYNGIGL TPRGSGTNGY+QRNL+ V  R+ E    PD KG+        ++ K+PN DIL+HERKR++EL+C+ELE++ME+QGY  + I+ KV  +R  L++K
Sbjct:    1 MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGER---PDYKGEEELRRLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEK 101
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Human
Match: SRRM2 (serine/arginine repetitive matrix 2 [Source:HGNC Symbol;Acc:HGNC:16639])

HSP 1 Score: 99.7525 bits (247), Expect = 1.291e-20
Identity = 73/172 (42.44%), Postives = 104/172 (60.47%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKGQ--------SIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSFFEKSSKRK 521
            MYNGIGL TPRGSGTNGY+QRNL+ V  R+ E    PD KG+        ++ K+PN DIL+HERKR++EL+C+ELE++ME+QGY  + I+ KV  +R  L++K         +V     E+  G R     TH++A  N  K+++ + A  I SD   D +SF  +   R+
Sbjct:    1 MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGER---PDYKGEEELRRLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEK---------DVNPGGKEETPGQRPAVTETHQLAELNEKKNERLRAAFGI-SDSYVDGSSFDPQRRARE 159
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Human
Match: SRRM3 (serine/arginine repetitive matrix 3 [Source:HGNC Symbol;Acc:HGNC:26729])

HSP 1 Score: 73.1738 bits (178), Expect = 1.286e-12
Identity = 28/53 (52.83%), Postives = 45/53 (84.91%), Query Frame = 3 
Query:  159 IFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDK 317
            + K+ +++IL+HERKR++ELKC+EL+++ME+QGYS E+I  KV  +RQ L++K
Sbjct:   46 LVKRAHREILDHERKRRVELKCMELQEMMEEQGYSEEEIRQKVGTFRQMLMEK 98
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Celegans
Match: rsr-2 (SR protein related [Source:UniProtKB/TrEMBL;Acc:Q9U213])

HSP 1 Score: 100.138 bits (248), Expect = 5.237e-22
Identity = 60/153 (39.22%), Postives = 88/153 (57.52%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHV-PVRKQEEYKPPD---TKGQSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDK-HNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSD 473
            MYNGIGL T RGSGTNGY+Q NL+H+   R++ EY   D        + +KPN++I++H RKR+IE+KC E E L+E +G   EDIE KV  YR++L+ +  + ++ +D E++              K +H    A      K +NAL +  D
Sbjct:    1 MYNGIGLQTARGSGTNGYVQSNLSHLMQARRKIEYNGEDDLRKMEAELNRKPNEEIMDHNRKRQIEVKCTEFEMLLEDKGLDDEDIERKVGEYRKNLLKQLESGELNVDEELST-------------KESHARRRAAANNRDKMRNALGLGED 140
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Fly
Match: CG7971 (gene:FBgn0035253 transcript:FBtr0072806)

HSP 1 Score: 142.51 bits (358), Expect = 2.043e-34
Identity = 74/165 (44.85%), Postives = 108/165 (65.45%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHV-PVRKQEEYKPPD-TKG--QSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSFFEKSS 512
            MYNGIGLTTPRGSGTNG++QRN A V P +K ++Y+  D TK     + + PNK+IL+H+RKRKIE+KC+ELED++EKQG + E+I+++V+ +RQ L+ +        T++  D+F     GR+  + TH+IA A   K+ + + A NI       +  F E SS
Sbjct:    1 MYNGIGLTTPRGSGTNGHVQRNWACVRPGKKDKDYRAEDDTKKLDAQLNRPPNKEILDHDRKRKIEVKCLELEDILEKQGRTPEEIKSQVDSFRQKLMGQGK------TDLAKDEF-----GRVAARDTHQIAEAQQQKNARLREAFNI-------SEYFVEGSS 147
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Fly
Match: CG7971 (gene:FBgn0035253 transcript:FBtr0309252)

HSP 1 Score: 142.51 bits (358), Expect = 2.043e-34
Identity = 74/165 (44.85%), Postives = 108/165 (65.45%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHV-PVRKQEEYKPPD-TKG--QSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSFFEKSS 512
            MYNGIGLTTPRGSGTNG++QRN A V P +K ++Y+  D TK     + + PNK+IL+H+RKRKIE+KC+ELED++EKQG + E+I+++V+ +RQ L+ +        T++  D+F     GR+  + TH+IA A   K+ + + A NI       +  F E SS
Sbjct:    1 MYNGIGLTTPRGSGTNGHVQRNWACVRPGKKDKDYRAEDDTKKLDAQLNRPPNKEILDHDRKRKIEVKCLELEDILEKQGRTPEEIKSQVDSFRQKLMGQGK------TDLAKDEF-----GRVAARDTHQIAEAQQQKNARLREAFNI-------SEYFVEGSS 147
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Fly
Match: CG7971 (gene:FBgn0035253 transcript:FBtr0072807)

HSP 1 Score: 142.124 bits (357), Expect = 3.283e-34
Identity = 74/165 (44.85%), Postives = 108/165 (65.45%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHV-PVRKQEEYKPPD-TKG--QSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSFFEKSS 512
            MYNGIGLTTPRGSGTNG++QRN A V P +K ++Y+  D TK     + + PNK+IL+H+RKRKIE+KC+ELED++EKQG + E+I+++V+ +RQ L+ +        T++  D+F     GR+  + TH+IA A   K+ + + A NI       +  F E SS
Sbjct:    1 MYNGIGLTTPRGSGTNGHVQRNWACVRPGKKDKDYRAEDDTKKLDAQLNRPPNKEILDHDRKRKIEVKCLELEDILEKQGRTPEEIKSQVDSFRQKLMGQGK------TDLAKDEF-----GRVAARDTHQIAEAQQQKNARLREAFNI-------SEYFVEGSS 147
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Fly
Match: CG7971 (gene:FBgn0035253 transcript:FBtr0303107)

HSP 1 Score: 117.472 bits (293), Expect = 1.713e-26
Identity = 63/124 (50.81%), Postives = 87/124 (70.16%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHV-PVRKQEEYKPPD-TKG--QSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRI 389
            MYNGIGLTTPRGSGTNG++QRN A V P +K ++Y+  D TK     + + PNK+IL+H+RKRKIE+KC+ELED++EKQG + E+I+++V+ +RQ L+     Q K        D  KD  GR+
Sbjct:    1 MYNGIGLTTPRGSGTNGHVQRNWACVRPGKKDKDYRAEDDTKKLDAQLNRPPNKEILDHDRKRKIEVKCLELEDILEKQGRTPEEIKSQVDSFRQKLMG----QGKT-------DLAKDEFGRV 113
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Zebrafish
Match: srrm2 (serine/arginine repetitive matrix 2 [Source:ZFIN;Acc:ZDB-GENE-050522-399])

HSP 1 Score: 138.658 bits (348), Expect = 4.883e-33
Identity = 72/168 (42.86%), Postives = 98/168 (58.33%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKG------------QSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSF 497
            MYNGIGLTTPRGSGTNGY+QRNL+ + V++       D +G              + ++PN DILEH+RKR++E+KC EL+D+ME+QGYSAE+IE KVN +R  ++ +  E     TE T                TH +A AN  K+ + + A  I S D  D +SF
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSIRVKRNR-----DERGGERDEKDKERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNTFR-LMLQERQEPAPPPTEKTAVTE------------THALAAANQQKNDRLRQAFGI-SSDYVDGSSF 149
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Zebrafish
Match: AL928885.2 (pep chromosome:GRCz11:CHR_ALT_CTG3_1_20:32635732:32638430:1 gene:ENSDARG00000112583.1 transcript:ENSDART00000182458.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AL928885.2)

HSP 1 Score: 127.487 bits (319), Expect = 5.507e-33
Identity = 68/155 (43.87%), Postives = 95/155 (61.29%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRK-------QEEYKPPDTKGQSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSD 473
            MYNGIGLTTPRGSGTNGY+QRNL+ + V++       + + K  +     + ++PN DILEH+RKR++E+KC EL+D+ME+QGYSAE+IE KVN +R  ++ +  E     TE T                TH +A AN  K+ + + A  I SD
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSIRVKRNRDERGGERDEKDKERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNTFR-LMLQERQEPAPPPTEKT------------AVTETHALAAANQQKNDRLRQAFGISSD 142
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Xenopus
Match: epb41 (erythrocyte membrane protein band 4.1 [Source:Xenbase;Acc:XB-GENE-481625])

HSP 1 Score: 111.309 bits (277), Expect = 3.883e-24
Identity = 75/164 (45.73%), Postives = 103/164 (62.80%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRK-------QEEYKPPDTKGQSIF-KKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSF 497
            MYNGIGL TPRGSGTNGY+QRNL+ V  +K       +EE K    K +++  KKPN+DIL+HERKRK+ELKC+ELE++ME+QGYS  +I+ KV  +R  L +K   Q K + +   +  E           TH++A AN  K+++ + A  I SD   D +SF
Sbjct:    1 MYNGIGLPTPRGSGTNGYVQRNLSSVRHKKDRTDYKSEEELK----KLENLLVKKPNQDILDHERKRKVELKCLELEEMMEEQGYSEAEIQEKVATFRLMLQEKDLTQSKEEEKQKANISE-----------THQMAEANEKKNERLREAFGI-SDSYVDGSSF 148
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Xenopus
Match: epb41 (erythrocyte membrane protein band 4.1 [Source:Xenbase;Acc:XB-GENE-481625])

HSP 1 Score: 110.923 bits (276), Expect = 4.335e-24
Identity = 75/164 (45.73%), Postives = 103/164 (62.80%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRK-------QEEYKPPDTKGQSIF-KKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSF 497
            MYNGIGL TPRGSGTNGY+QRNL+ V  +K       +EE K    K +++  KKPN+DIL+HERKRK+ELKC+ELE++ME+QGYS  +I+ KV  +R  L +K   Q K + +   +  E           TH++A AN  K+++ + A  I SD   D +SF
Sbjct:    1 MYNGIGLPTPRGSGTNGYVQRNLSSVRHKKDRTDYKSEEELK----KLENLLVKKPNQDILDHERKRKVELKCLELEEMMEEQGYSEAEIQEKVATFRLMLQEKDLTQSKEEEKQKANISE-----------THQMAEANEKKNERLREAFGI-SDSYVDGSSF 148
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Xenopus
Match: epb41 (erythrocyte membrane protein band 4.1 [Source:Xenbase;Acc:XB-GENE-481625])

HSP 1 Score: 110.923 bits (276), Expect = 4.420e-24
Identity = 75/164 (45.73%), Postives = 103/164 (62.80%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRK-------QEEYKPPDTKGQSIF-KKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSF 497
            MYNGIGL TPRGSGTNGY+QRNL+ V  +K       +EE K    K +++  KKPN+DIL+HERKRK+ELKC+ELE++ME+QGYS  +I+ KV  +R  L +K   Q K + +   +  E           TH++A AN  K+++ + A  I SD   D +SF
Sbjct:    1 MYNGIGLPTPRGSGTNGYVQRNLSSVRHKKDRTDYKSEEELK----KLENLLVKKPNQDILDHERKRKVELKCLELEEMMEEQGYSEAEIQEKVATFRLMLQEKDLTQSKEEEKQKANISE-----------THQMAEANEKKNERLREAFGI-SDSYVDGSSF 148
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Xenopus
Match: epb41 (erythrocyte membrane protein band 4.1 [Source:Xenbase;Acc:XB-GENE-481625])

HSP 1 Score: 110.923 bits (276), Expect = 4.488e-24
Identity = 75/164 (45.73%), Postives = 103/164 (62.80%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRK-------QEEYKPPDTKGQSIF-KKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSF 497
            MYNGIGL TPRGSGTNGY+QRNL+ V  +K       +EE K    K +++  KKPN+DIL+HERKRK+ELKC+ELE++ME+QGYS  +I+ KV  +R  L +K   Q K + +   +  E           TH++A AN  K+++ + A  I SD   D +SF
Sbjct:    1 MYNGIGLPTPRGSGTNGYVQRNLSSVRHKKDRTDYKSEEELK----KLENLLVKKPNQDILDHERKRKVELKCLELEEMMEEQGYSEAEIQEKVATFRLMLQEKDLTQSKEEEKQKANISE-----------THQMAEANEKKNERLREAFGI-SDSYVDGSSF 148
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Xenopus
Match: micu2 (mitochondrial calcium uptake 2 [Source:Xenbase;Acc:XB-GENE-994925])

HSP 1 Score: 75.485 bits (184), Expect = 7.483e-14
Identity = 44/131 (33.59%), Postives = 73/131 (55.73%), Query Frame = 3 
Query:   36 NGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKGQSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLI---------DKHNEQMKIDTEVTIDDFEKDMGGRIVGKG 401
            NG  + +P+    NG+ Q   +      +EE +   T   ++ KK +++IL+HERKR++ELKC+EL+++ME+QGYS E+I  KV  +RQ L+         D+H  Q+ I+    +   E      + G+G
Sbjct:    6 NGTRMPSPQ-EAANGFPQPCASGTWHNAEEESR---TTEPNLVKKAHREILDHERKRRVELKCMELQEMMEEQGYSEEEICQKVGTFRQMLMEKEGVLTREDQHGRQIVIENHYMVPGEESATEYSMYGEG 132
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Mouse
Match: Srrm2 (serine/arginine repetitive matrix 2 [Source:MGI Symbol;Acc:MGI:1923206])

HSP 1 Score: 116.316 bits (290), Expect = 2.690e-29
Identity = 76/181 (41.99%), Postives = 107/181 (59.12%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKGQ--------SIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSFFEKSSKRKISDIKNEDS 548
            MYNGIGL TPRGSGTNGY+QRNL+ V  R+ E    PD KG+        ++ K+PN DIL+HERKR++EL+C+ELE++ME+QGY  + I+ KV  +R  L++K         +V     E+  G R V   TH++A  N  K+++ + A  I SD   D +SF  +   R+   I  E  
Sbjct:    1 MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGER---PDYKGEEELRHLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEK---------DVNPGAKEETPGQRPVVTETHQLAELNEKKNERLRAAFGI-SDSYVDGSSFDPQRRAREAKQIAPEPP 168
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Mouse
Match: Srrm2 (serine/arginine repetitive matrix 2 [Source:MGI Symbol;Acc:MGI:1923206])

HSP 1 Score: 115.546 bits (288), Expect = 2.803e-29
Identity = 76/181 (41.99%), Postives = 107/181 (59.12%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKGQ--------SIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSFFEKSSKRKISDIKNEDS 548
            MYNGIGL TPRGSGTNGY+QRNL+ V  R+ E    PD KG+        ++ K+PN DIL+HERKR++EL+C+ELE++ME+QGY  + I+ KV  +R  L++K         +V     E+  G R V   TH++A  N  K+++ + A  I SD   D +SF  +   R+   I  E  
Sbjct:    1 MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGER---PDYKGEEELRHLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEK---------DVNPGAKEETPGQRPVVTETHQLAELNEKKNERLRAAFGI-SDSYVDGSSFDPQRRAREAKQIAPEPP 168
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Mouse
Match: Srrm2 (serine/arginine repetitive matrix 2 [Source:MGI Symbol;Acc:MGI:1923206])

HSP 1 Score: 100.908 bits (250), Expect = 4.100e-21
Identity = 76/179 (42.46%), Postives = 107/179 (59.78%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKGQ--------SIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSFFEKSSKRKISDIKNE 542
            MYNGIGL TPRGSGTNGY+QRNL+ V  R+ E    PD KG+        ++ K+PN DIL+HERKR++EL+C+ELE++ME+QGY  + I+ KV  +R  L++K         +V     E+  G R V   TH++A  N  K+++ + A  I SD   D +SF  +   R+   I  E
Sbjct:    1 MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGER---PDYKGEEELRHLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEK---------DVNPGAKEETPGQRPVVTETHQLAELNEKKNERLRAAFGI-SDSYVDGSSFDPQRRAREAKQIAPE 166
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Mouse
Match: Srrm3 (serine/arginine repetitive matrix 3 [Source:MGI Symbol;Acc:MGI:1920309])

HSP 1 Score: 70.8626 bits (172), Expect = 3.449e-14
Identity = 28/54 (51.85%), Postives = 45/54 (83.33%), Query Frame = 3 
Query:  156 SIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDK 317
             + K+ +++IL+HERKR++ELKC+EL+++ME+QGYS E+I  KV  +RQ L++K
Sbjct:   45 GLVKRAHREILDHERKRRVELKCMELQEMMEEQGYSEEEIRQKVGTFRQMLMEK 98
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Mouse
Match: Srrm3 (serine/arginine repetitive matrix 3 [Source:MGI Symbol;Acc:MGI:1920309])

HSP 1 Score: 70.8626 bits (172), Expect = 1.613e-12
Identity = 28/54 (51.85%), Postives = 45/54 (83.33%), Query Frame = 3 
Query:  156 SIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDK 317
             + K+ +++IL+HERKR++ELKC+EL+++ME+QGYS E+I  KV  +RQ L++K
Sbjct:   45 GLVKRAHREILDHERKRRVELKCMELQEMMEEQGYSEEEIRQKVGTFRQMLMEK 98
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. UniProt/SwissProt
Match: sp|Q8BTI8|SRRM2_MOUSE (Serine/arginine repetitive matrix protein 2 OS=Mus musculus OX=10090 GN=Srrm2 PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 2.868e-20
Identity = 76/179 (42.46%), Postives = 107/179 (59.78%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKGQ--------SIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSFFEKSSKRKISDIKNE 542
            MYNGIGL TPRGSGTNGY+QRNL+ V  R+ E    PD KG+        ++ K+PN DIL+HERKR++EL+C+ELE++ME+QGY  + I+ KV  +R  L++K         +V     E+  G R V   TH++A  N  K+++ + A  I SD   D +SF  +   R+   I  E
Sbjct:    1 MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGER---PDYKGEEELRHLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEK---------DVNPGAKEETPGQRPVVTETHQLAELNEKKNERLRAAFGI-SDSYVDGSSFDPQRRAREAKQIAPE 166
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. UniProt/SwissProt
Match: sp|Q9UQ35|SRRM2_HUMAN (Serine/arginine repetitive matrix protein 2 OS=Homo sapiens OX=9606 GN=SRRM2 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 6.198e-20
Identity = 73/172 (42.44%), Postives = 104/172 (60.47%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKGQ--------SIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSFFEKSSKRK 521
            MYNGIGL TPRGSGTNGY+QRNL+ V  R+ E    PD KG+        ++ K+PN DIL+HERKR++EL+C+ELE++ME+QGY  + I+ KV  +R  L++K         +V     E+  G R     TH++A  N  K+++ + A  I SD   D +SF  +   R+
Sbjct:    1 MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGER---PDYKGEEELRRLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEK---------DVNPGGKEETPGQRPAVTETHQLAELNEKKNERLRAAFGI-SDSYVDGSSFDPQRRARE 159
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. UniProt/SwissProt
Match: sp|P0CM94|CWC21_CRYNJ (Pre-mRNA-splicing factor CWC21 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=CWC21 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.776e-19
Identity = 54/160 (33.75%), Postives = 82/160 (51.25%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKG----------QSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDE 479
            MY  +GL T RGSGTNGY+ RN AH+ +R+      P   G            I + P++ ILEHERKR++E+K +EL D +E++G   +DIE + +  RQ L  +  +                +GGR  G  TH +A A  ++  + + AL +  + E
Sbjct:    1 MYGNVGLATARGSGTNGYVTRNTAHLRIREGPPGGQPYGSGYDALLESVSKPPIHRAPDQGILEHERKRRVEVKVMELRDELEEKGMEEDDIEEECSKLRQKLTAQPEQ----------------LGGR--GLDTHSLAAAKEIEMSRLQRALGVSVNHE 142
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. UniProt/SwissProt
Match: sp|P0CM95|CWC21_CRYNB (Pre-mRNA-splicing factor CWC21 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=CWC21 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.776e-19
Identity = 54/160 (33.75%), Postives = 82/160 (51.25%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKG----------QSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDE 479
            MY  +GL T RGSGTNGY+ RN AH+ +R+      P   G            I + P++ ILEHERKR++E+K +EL D +E++G   +DIE + +  RQ L  +  +                +GGR  G  TH +A A  ++  + + AL +  + E
Sbjct:    1 MYGNVGLATARGSGTNGYVTRNTAHLRIREGPPGGQPYGSGYDALLESVSKPPIHRAPDQGILEHERKRRVEVKVMELRDELEEKGMEEDDIEEECSKLRQKLTAQPEQ----------------LGGR--GLDTHSLAAAKEIEMSRLQRALGVSVNHE 142
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. UniProt/SwissProt
Match: sp|Q4P0G6|CWC21_USTMA (Pre-mRNA-splicing factor CWC21 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=CWC21 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.517e-16
Identity = 56/152 (36.84%), Postives = 81/152 (53.29%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYK--PPDTKGQSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDT-EVTIDDFEKDMG--GRIVGKGTHEIALANNLKDQKFKNALNIKS 470
            MYNGIGL T RG+GTNGY+QRNL++    K+   K    D  G      P+  ILEHERKR +E+KC+EL   +E    + ++IE +V   R++L    N Q+   T E     +E       R+   GTH+        D++F  A+ ++S
Sbjct:    1 MYNGIGLKTARGTGTNGYVQRNLSNFEAGKKRWNKRDATDEVGSDTRLGPDAAILEHERKRAVEVKCMELRVELEDDDVADDEIEERVAQLRETL----NAQLAEQTNESAASSYESGRAKETRLRHMGTHQQIQTKQHLDRRFAIAVGVES 148
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. TrEMBL
Match: A0A4S2MBM5 (cwf21 domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_001272 PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.802e-36
Identity = 84/170 (49.41%), Postives = 109/170 (64.12%), Query Frame = 3 
Query:   27 NMYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQE-EYKPPD---TKGQSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLID--KHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSFFEKSSKR 518
             MYNGIGL TPRGSGTNGY+QRNLA +   K++  YK  D       + FK+PNK+ILEHERKRKIE+KC ELE LME+QGY   +I  KV+ +R SL++  K  ++ K    V +    +   GRI+ KGTHE A  N LK+  FK AL I +D + D NS  + + +R
Sbjct:   24 GMYNGIGLPTPRGSGTNGYVQRNLAFISTFKEKIPYKTDDDVKRADAAHFKEPNKEILEHERKRKIEVKCFELEQLMEEQGYMQSEITRKVSAFRASLLEELKAEDRKKSVMAVIVPVAPEPETGRILPKGTHETAAVNVLKNTVFKEALGIGADFQ-DGNSLVQANQRR 192
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. TrEMBL
Match: A0A4S2MHX2 (cwf21 domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_001272 PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.106e-36
Identity = 84/170 (49.41%), Postives = 109/170 (64.12%), Query Frame = 3 
Query:   27 NMYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQE-EYKPPD---TKGQSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLID--KHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSFFEKSSKR 518
             MYNGIGL TPRGSGTNGY+QRNLA +   K++  YK  D       + FK+PNK+ILEHERKRKIE+KC ELE LME+QGY   +I  KV+ +R SL++  K  ++ K    V +    +   GRI+ KGTHE A  N LK+  FK AL I +D + D NS  + + +R
Sbjct:   24 GMYNGIGLPTPRGSGTNGYVQRNLAFISTFKEKIPYKTDDDVKRADAAHFKEPNKEILEHERKRKIEVKCFELEQLMEEQGYMQSEITRKVSAFRASLLEELKAEDRKKSVMAVIVPVAPEPETGRILPKGTHETAAVNVLKNTVFKEALGIGADFQ-DGNSLVQANQRR 192
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. TrEMBL
Match: A0A4S2MBC8 (cwf21 domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_001272 PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.166e-36
Identity = 84/170 (49.41%), Postives = 109/170 (64.12%), Query Frame = 3 
Query:   27 NMYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQE-EYKPPD---TKGQSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLID--KHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSFFEKSSKR 518
             MYNGIGL TPRGSGTNGY+QRNLA +   K++  YK  D       + FK+PNK+ILEHERKRKIE+KC ELE LME+QGY   +I  KV+ +R SL++  K  ++ K    V +    +   GRI+ KGTHE A  N LK+  FK AL I +D + D NS  + + +R
Sbjct:   24 GMYNGIGLPTPRGSGTNGYVQRNLAFISTFKEKIPYKTDDDVKRADAAHFKEPNKEILEHERKRKIEVKCFELEQLMEEQGYMQSEITRKVSAFRASLLEELKAEDRKKSVMAVIVPVAPEPETGRILPKGTHETAAVNVLKNTVFKEALGIGADFQ-DGNSLVQANQRR 192
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. TrEMBL
Match: A0A4S2MBC9 (cwf21 domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_001272 PE=4 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.532e-36
Identity = 84/170 (49.41%), Postives = 109/170 (64.12%), Query Frame = 3 
Query:   27 NMYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQE-EYKPPD---TKGQSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLID--KHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSFFEKSSKR 518
             MYNGIGL TPRGSGTNGY+QRNLA +   K++  YK  D       + FK+PNK+ILEHERKRKIE+KC ELE LME+QGY   +I  KV+ +R SL++  K  ++ K    V +    +   GRI+ KGTHE A  N LK+  FK AL I +D + D NS  + + +R
Sbjct:   24 GMYNGIGLPTPRGSGTNGYVQRNLAFISTFKEKIPYKTDDDVKRADAAHFKEPNKEILEHERKRKIEVKCFELEQLMEEQGYMQSEITRKVSAFRASLLEELKAEDRKKSVMAVIVPVAPEPETGRILPKGTHETAAVNVLKNTVFKEALGIGADFQ-DGNSLVQANQRR 192
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. TrEMBL
Match: A0A4S2MHE8 (cwf21 domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_001272 PE=4 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 5.363e-36
Identity = 84/170 (49.41%), Postives = 109/170 (64.12%), Query Frame = 3 
Query:   27 NMYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQE-EYKPPD---TKGQSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLID--KHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSFFEKSSKR 518
             MYNGIGL TPRGSGTNGY+QRNLA +   K++  YK  D       + FK+PNK+ILEHERKRKIE+KC ELE LME+QGY   +I  KV+ +R SL++  K  ++ K    V +    +   GRI+ KGTHE A  N LK+  FK AL I +D + D NS  + + +R
Sbjct:   24 GMYNGIGLPTPRGSGTNGYVQRNLAFISTFKEKIPYKTDDDVKRADAAHFKEPNKEILEHERKRKIEVKCFELEQLMEEQGYMQSEITRKVSAFRASLLEELKAEDRKKSVMAVIVPVAPEPETGRILPKGTHETAAVNVLKNTVFKEALGIGADFQ-DGNSLVQANQRR 192
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Cavefish
Match: ENSAMXT00000053117.1 (pep primary_assembly:Astyanax_mexicanus-2.0:2:14879562:14882955:-1 gene:ENSAMXG00000038994.1 transcript:ENSAMXT00000053117.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 120.939 bits (302), Expect = 8.205e-31
Identity = 70/163 (42.94%), Postives = 97/163 (59.51%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQ--EEYKPPDTKGQ-----SIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSF 497
            MYNGIGLTTPRGSGTNGY+QRNL+ +  ++   E     D K +      + ++PN DILEH+RKR++E+KC EL+D+ME+QGYSAE+IE KVN +R  L +K         +  + +             TH +A AN  K+ + + A  I S D  D +SF
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSIRSKRSRDERGGAKDEKDRERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNSFRLMLQEKQEPPPPPTEKQVVTE-------------THALAAANQQKNDRLREAFGIGS-DYVDGSSF 149
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Cavefish
Match: SRRM3 (serine/arginine repetitive matrix 3 [Source:NCBI gene;Acc:103041503])

HSP 1 Score: 75.485 bits (184), Expect = 1.230e-13
Identity = 42/100 (42.00%), Postives = 64/100 (64.00%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGY----IQRNLAHVPVRKQEEYKPPDTKGQSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDK 317
            MY+G  + +P G G NG       R  A     K+E  + P+     + KK +++IL+HERKR++ELKC+EL+++ME+QGYS E+I  KV  +RQ L++K
Sbjct:    1 MYDGARVPSP-GEGANGVPLQPAARPTAEEEPEKEEAVQQPEP---VLVKKAHREILDHERKRRVELKCMELQEMMEEQGYSEEEIRQKVGTFRQMLMEK 96
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Nematostella
Match: EDO47429 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RM21])

HSP 1 Score: 103.605 bits (257), Expect = 2.123e-26
Identity = 52/99 (52.53%), Postives = 72/99 (72.73%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQE-EYKPPDTKGQSIF---KKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLID 314
            MYN IGLTT RGSGTNGY+QRNL+ V  RK++ +YK  +   +      KKPNK+ILEH++KR++ELKC+EL+D+ME+QGY   +++ KV   R  L +
Sbjct:    1 MYNNIGLTTARGSGTNGYVQRNLSFVRNRKEKIDYKTDEDLAKLEMMNTKKPNKEILEHQKKREVELKCMELQDMMEEQGYDDAEVQLKVTQLRAFLTE 99
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Medaka
Match: ENSORLT00000001333.2 (serine/arginine repetitive matrix protein 2 [Source:NCBI gene;Acc:101162294])

HSP 1 Score: 136.346 bits (342), Expect = 2.268e-32
Identity = 69/160 (43.12%), Postives = 95/160 (59.38%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKG------------QSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSD 473
            MYNGIGLTTPRGSGTNGY+QRNL+ V V++     P D +G              + ++PN DILEH+RKR++E+KC EL+D+ME+QGY+AE+IE KVN +R  L +K         + T+ +             TH +A AN  K+ + + A  I SD
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSVRVKR-----PRDERGGERDEKDRERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYAAEEIEEKVNSFRMMLQEKEEPPPSSTQKPTVTE-------------THAMAAANQQKNDRLRAAFGIASD 142
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Medaka
Match: ENSORLT00000030740.1 (serine/arginine repetitive matrix protein 2 [Source:NCBI gene;Acc:101162294])

HSP 1 Score: 136.346 bits (342), Expect = 2.314e-32
Identity = 69/160 (43.12%), Postives = 95/160 (59.38%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKG------------QSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSD 473
            MYNGIGLTTPRGSGTNGY+QRNL+ V V++     P D +G              + ++PN DILEH+RKR++E+KC EL+D+ME+QGY+AE+IE KVN +R  L +K         + T+ +             TH +A AN  K+ + + A  I SD
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSVRVKR-----PRDERGGERDEKDRERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYAAEEIEEKVNSFRMMLQEKEEPPPSSTQKPTVTE-------------THAMAAANQQKNDRLRAAFGIASD 142
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Medaka
Match: ENSORLT00000043735.1 (serine/arginine repetitive matrix 3 [Source:NCBI gene;Acc:101172013])

HSP 1 Score: 78.9518 bits (193), Expect = 9.989e-15
Identity = 30/53 (56.60%), Postives = 48/53 (90.57%), Query Frame = 3 
Query:  159 IFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDK 317
            + KKP+++IL+HERKR++ELKC+EL+++ME+QGY+ E+I+ KV+ +RQ L+DK
Sbjct:   66 LVKKPHREILDHERKRRVELKCMELQEMMEEQGYTEEEIQQKVSTFRQMLMDK 118
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Planmine SMEST
Match: SMESG000056252.1 (SMESG000056252.1)

HSP 1 Score: 678.707 bits (1750), Expect = 0.000e+0
Identity = 439/443 (99.10%), Postives = 440/443 (99.32%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKGQSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSFFEKSSKRKISDIKNEDSHEDXXXXXXXXXXXXXXXEIEALSIDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQISESISSKRNSXXXXXXXXXXXXXXXXXXXXXXXXXXTSNKDFGSNIRDRSREKIGSDKFNNRRDEESHRRFCENDRFNNSARNNEMHRDSRRKDAYKDRDYNREFVNDSEKEIRRQRETCKESKFTNRESRKEYREPRKESKDINKRSKSAIEIKEGKTDLRENKDKKESRDLTRNSRDIPRESRDIPRESRDIPRES 1358
            MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKGQSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSFFEKSSKRKISDIKNEDSHEDKSKKKKSKKSKKKKKEIEALSIDTSDSEEENKKEKKRKHKKKSKKQKKKSKKSKKKHDSD DSKESGQISESISSKRNSKEKIEQEREEMEKSKHSNKKSEKHNETSNKDFGSNIRDRSREKIGSDKFNNRRDEESHRRFCENDRFNNSARNNEMHRDSRRKDAYKDRDYNREFVNDSEKEIRRQRET KESKFTNRESRKEYREPRKESKDI+KRSKSAIEIK GKTDLRENKDKKESRDLTRNSRDIPRESRDIPRESRDIPRES
Sbjct:    1 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKGQSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSFFEKSSKRKISDIKNEDSHEDKSKKKKSKKSKKKKKEIEALSIDTSDSEEENKKEKKRKHKKKSKKQKKKSKKSKKKHDSDADSKESGQISESISSKRNSKEKIEQEREEMEKSKHSNKKSEKHNETSNKDFGSNIRDRSREKIGSDKFNNRRDEESHRRFCENDRFNNSARNNEMHRDSRRKDAYKDRDYNREFVNDSEKEIRRQRETGKESKFTNRESRKEYREPRKESKDIDKRSKSAIEIK-GKTDLRENKDKKESRDLTRNSRDIPRESRDIPRESRDIPRES 442

HSP 2 Score: 51.6026 bits (122), Expect = 2.149e-6
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 1 
Query: 1270 NRGI*LEIQEIFLGNQEIFLGNQEIFLGNQ 1359
            N+ I L  QEIFLGNQEIFLGNQEIFLGNQ
Sbjct:  511 NQEIFLGNQEIFLGNQEIFLGNQEIFLGNQ 540

HSP 3 Score: 51.6026 bits (122), Expect = 2.149e-6
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 1 
Query: 1270 NRGI*LEIQEIFLGNQEIFLGNQEIFLGNQ 1359
            N+ I L  QEIFLGNQEIFLGNQEIFLGNQ
Sbjct:  518 NQEIFLGNQEIFLGNQEIFLGNQEIFLGNQ 547

HSP 4 Score: 51.6026 bits (122), Expect = 2.149e-6
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 1 
Query: 1270 NRGI*LEIQEIFLGNQEIFLGNQEIFLGNQ 1359
            N+ I L  QEIFLGNQEIFLGNQEIFLGNQ
Sbjct:  525 NQEIFLGNQEIFLGNQEIFLGNQEIFLGNQ 554

HSP 5 Score: 51.6026 bits (122), Expect = 2.149e-6
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 1 
Query: 1270 NRGI*LEIQEIFLGNQEIFLGNQEIFLGNQ 1359
            N+ I L  QEIFLGNQEIFLGNQEIFLGNQ
Sbjct:  532 NQEIFLGNQEIFLGNQEIFLGNQEIFLGNQ 561
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Planmine SMEST
Match: SMESG000056252.1 (SMESG000056252.1)

HSP 1 Score: 315.849 bits (808), Expect = 3.561e-103
Identity = 152/157 (96.82%), Postives = 152/157 (96.82%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKGQSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKDTNSFF 500
            MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKGQSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEK     F
Sbjct:    1 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKGQSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQMKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDEKLVEIIF 157
[Close]
BLAST of Pre-mRNA-splicing factor CWC21 vs. Planmine SMEST
Match: SMESG000004814.1 (SMESG000004814.1)

HSP 1 Score: 174.096 bits (440), Expect = 1.866e-50
Identity = 85/100 (85.00%), Postives = 90/100 (90.00%), Query Frame = 3 
Query:   30 MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKGQSIFKKPNKDILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQ 329
            M+NGIGLTT RGSGTNGYI+RNLA VPVRKQE YK  DTK  SI KKPN DILEHERKRKIELKCVELEDLMEKQGYSAEDIE KVNVYR+SLIDKHN++
Sbjct:    1 MHNGIGLTTARGSGTNGYIRRNLALVPVRKQE-YKSSDTKWHSISKKPNNDILEHERKRKIELKCVELEDLMEKQGYSAEDIEVKVNVYRKSLIDKHNDK 99
The following BLAST results are available for this feature:
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 4
Match NameE-valueIdentityDescription
SRRM21.367e-2643.90serine/arginine repetitive matrix 2 [Source:HGNC S... [more]
SRRM26.572e-2553.85serine/arginine repetitive matrix 2 [Source:HGNC S... [more]
SRRM21.291e-2042.44serine/arginine repetitive matrix 2 [Source:HGNC S... [more]
SRRM31.286e-1252.83serine/arginine repetitive matrix 3 [Source:HGNC S... [more]
back to top
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rsr-25.237e-2239.22SR protein related [Source:UniProtKB/TrEMBL;Acc:Q... [more]
back to top
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 4
Match NameE-valueIdentityDescription
CG79712.043e-3444.85gene:FBgn0035253 transcript:FBtr0072806[more]
CG79712.043e-3444.85gene:FBgn0035253 transcript:FBtr0309252[more]
CG79713.283e-3444.85gene:FBgn0035253 transcript:FBtr0072807[more]
CG79711.713e-2650.81gene:FBgn0035253 transcript:FBtr0303107[more]
back to top
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
srrm24.883e-3342.86serine/arginine repetitive matrix 2 [Source:ZFIN;A... [more]
AL928885.25.507e-3343.87pep chromosome:GRCz11:CHR_ALT_CTG3_1_20:32635732:3... [more]
back to top
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
epb413.883e-2445.73erythrocyte membrane protein band 4.1 [Source:Xenb... [more]
epb414.335e-2445.73erythrocyte membrane protein band 4.1 [Source:Xenb... [more]
epb414.420e-2445.73erythrocyte membrane protein band 4.1 [Source:Xenb... [more]
epb414.488e-2445.73erythrocyte membrane protein band 4.1 [Source:Xenb... [more]
micu27.483e-1433.59mitochondrial calcium uptake 2 [Source:Xenbase;Acc... [more]
back to top
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Srrm22.690e-2941.99serine/arginine repetitive matrix 2 [Source:MGI Sy... [more]
Srrm22.803e-2941.99serine/arginine repetitive matrix 2 [Source:MGI Sy... [more]
Srrm24.100e-2142.46serine/arginine repetitive matrix 2 [Source:MGI Sy... [more]
Srrm33.449e-1451.85serine/arginine repetitive matrix 3 [Source:MGI Sy... [more]
Srrm31.613e-1251.85serine/arginine repetitive matrix 3 [Source:MGI Sy... [more]
back to top
BLAST of Pre-mRNA-splicing factor CWC21 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q8BTI8|SRRM2_MOUSE2.868e-2042.46Serine/arginine repetitive matrix protein 2 OS=Mus... [more]
sp|Q9UQ35|SRRM2_HUMAN6.198e-2042.44Serine/arginine repetitive matrix protein 2 OS=Hom... [more]
sp|P0CM94|CWC21_CRYNJ1.776e-1933.75Pre-mRNA-splicing factor CWC21 OS=Cryptococcus neo... [more]
sp|P0CM95|CWC21_CRYNB1.776e-1933.75Pre-mRNA-splicing factor CWC21 OS=Cryptococcus neo... [more]
sp|Q4P0G6|CWC21_USTMA2.517e-1636.84Pre-mRNA-splicing factor CWC21 OS=Ustilago maydis ... [more]
back to top
BLAST of Pre-mRNA-splicing factor CWC21 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4S2MBM51.802e-3649.41cwf21 domain-containing protein OS=Opisthorchis fe... [more]
A0A4S2MHX22.106e-3649.41cwf21 domain-containing protein OS=Opisthorchis fe... [more]
A0A4S2MBC82.166e-3649.41cwf21 domain-containing protein OS=Opisthorchis fe... [more]
A0A4S2MBC92.532e-3649.41cwf21 domain-containing protein OS=Opisthorchis fe... [more]
A0A4S2MHE85.363e-3649.41cwf21 domain-containing protein OS=Opisthorchis fe... [more]
back to top
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ENSAMXT00000053117.18.205e-3142.94pep primary_assembly:Astyanax_mexicanus-2.0:2:1487... [more]
SRRM31.230e-1342.00serine/arginine repetitive matrix 3 [Source:NCBI g... [more]
back to top
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO474292.123e-2652.53Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of Pre-mRNA-splicing factor CWC21 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
ENSORLT00000001333.22.268e-3243.13serine/arginine repetitive matrix protein 2 [Sourc... [more]
ENSORLT00000030740.12.314e-3243.13serine/arginine repetitive matrix protein 2 [Sourc... [more]
ENSORLT00000043735.19.989e-1556.60serine/arginine repetitive matrix 3 [Source:NCBI g... [more]
back to top
BLAST of Pre-mRNA-splicing factor CWC21 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000056252.12.149e-699.10SMESG000056252.1[more]
SMESG000056252.13.561e-10396.82SMESG000056252.1[more]
SMESG000004814.11.866e-5085.00SMESG000004814.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30026656 ID=SMED30026656|Name=Pre-mRNA-splicing factor CWC21|organism=Schmidtea mediterranea sexual|type=transcript|length=2445bp
TATATAAATCTTATATGATTTAGATAAACATGTATAATGGAATTGGTCTA
ACTACTCCTAGAGGAAGTGGTACGAATGGTTATATTCAGAGAAATTTAGC
TCATGTTCCGGTAAGAAAACAAGAAGAATATAAACCTCCCGATACAAAAG
GTCAGTCTATTTTCAAAAAACCTAACAAGGATATACTTGAACATGAAAGA
AAACGTAAGATCGAATTAAAGTGTGTTGAATTAGAAGATTTAATGGAAAA
GCAAGGATACTCTGCTGAAGATATTGAAGCAAAAGTTAATGTTTACCGTC
AAAGTTTAATTGATAAGCACAATGAACAAATGAAAATAGATACAGAAGTC
ACGATAGATGACTTCGAAAAGGATATGGGTGGTAGGATTGTCGGAAAAGG
AACTCACGAAATAGCTCTTGCAAATAATTTAAAAGATCAAAAATTTAAAA
ATGCACTTAATATTAAAAGTGACGACGAAAAGGATACAAATAGTTTTTTT
GAAAAGTCATCTAAACGAAAAATTAGTGATATAAAAAATGAAGATTCTCA
CGAAGATAAATCTAAGAAAAAGAAATCTAAGAAATCTAAAAAAAAGAAGA
AAGAAATTGAAGCATTGTCTATTGATACTTCAGATTCAGAAGAAGAAAAT
AAAAAAGAAAAAAAAAGAAAACACAAGAAAAAATCTAAGAAACAAAAGAA
AAAAAGTAAGAAGTCTAAGAAGAAGCACGATTCTGATCCAGATAGCAAAG
AGTCTGGGCAAATTAGTGAATCTATCTCATCAAAACGCAATTCTAAAGAA
AAGATAGAACAAGAAAGAGAAGAAATGGAAAAGTCAAAACACTCTAATAA
AAAATCAGAAAAGCACAATGAAACCTCGAATAAAGATTTCGGTTCAAATA
TTAGAGATAGATCAAGGGAAAAAATAGGTTCTGATAAATTCAATAACAGA
AGAGATGAAGAATCACACAGAAGATTCTGTGAGAATGATCGATTTAATAA
TTCAGCAAGAAATAATGAAATGCACAGAGATTCTCGCCGCAAAGACGCAT
ATAAAGATAGAGATTATAACAGAGAGTTCGTGAATGATTCAGAAAAAGAA
ATAAGAAGGCAACGTGAAACTTGTAAAGAATCAAAATTTACTAACAGAGA
ATCACGAAAAGAATACCGAGAACCCAGAAAGGAATCTAAAGATATTAATA
AAAGGTCAAAAAGTGCCATTGAAATTAAAGAAGGAAAAACGGATTTAAGA
GAAAATAAGGATAAAAAAGAATCGAGGGATTTAACTAGAAATTCAAGAGA
TATTCCTCGGGAATCAAGAGATATTCCTCGGGAATCAAGAGATATTCCTC
GGGAATCAAGAAAAGATCAAAGAGGTGAAGAAAGAGAGGGAAGAAAAGAG
CCTAAAGAAATAGAAAAAGAAATTAGAAAGGATCCTAAAATTTTAGAAAA
AGACTCGAGAACAAAAAGAAATAGTGATATCGAGAAAGACGCAAAGAGAG
ACATTATCAAAGAAAATGTAAAAGAAATTAGAAATGAAACAAAGAAAGAT
GTAAAAAACAGTTATATCAATAACAGAAAAGAATCAAAAGAATTGTGCAA
AGACAGAAAAGAGCCAAATGTCACGGAGAAAGAATCACAAAGAAATCTTA
AACAAATTCCTAAAGAATCAGATAAAGAAATCAAAAGACGTCCAAAAGAA
TCTGAAAAGGAAAGCGAAAATGAATTGGAAAGAGATAAAATAGATAAACT
GAACAGAAAACATACCCAGAGTTCAAGAGATAAAGAAAGGAATACCGATA
AGCCAGCAAGGCGAGAGTATGAATCGCGATCATCTAAAATCGATTCTGAT
GTTCACAGAGAACCGAAAGAGAAAGAAGAAAAGAAGCCGAAATCTTATCG
TGATAATGAAACTCGAGATGGAAACAGTAATAAAACTCGAAGTGCAAACG
ACTCTAAATATAAAACCAATGAACGATCGGAACCAACCAATAGACAGGAA
AACGAATCAGACAGAAAGCACCAAAAAGATTCTAGAGAAAAATTACACGA
TGGGAATAAAAATCCTTCCGAAAAGAATATCGACGAGAAAAAAGATTTGA
AGCGGAAATTAAGTGAAGAGAATCAAGTGTCAATTGATCGGAAAATTCAA
AAATTATCTGAAAATAAGACTTCAACAACAACAAATAATCCTGTGAATAC
AGATGATAAGAAACGACGCAGAAATTCATCTGTCGACTCGTCATCCTCAT
CCAATAGTTCAGCTTCGTCATCCAGTAGTGATTCCAGCTCATCTAGTGAC
GATAGCCAGTGAATATATTTCTGTGAACGAATGTTTTAAAATTACAATTT
ACTATTTATTGTAAATTGCCATTTTCAATTTTATCAAAATAAAAATAATA
ATTAAATGTAAATAGACATGGATATATATATAAACTTGTTTAAGC
back to top

protein sequence of SMED30026656-orf-1

>SMED30026656-orf-1 ID=SMED30026656-orf-1|Name=SMED30026656-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=761bp
MYNGIGLTTPRGSGTNGYIQRNLAHVPVRKQEEYKPPDTKGQSIFKKPNK
DILEHERKRKIELKCVELEDLMEKQGYSAEDIEAKVNVYRQSLIDKHNEQ
MKIDTEVTIDDFEKDMGGRIVGKGTHEIALANNLKDQKFKNALNIKSDDE
KDTNSFFEKSSKRKISDIKNEDSHEDKSKKKKSKKSKKKKKEIEALSIDT
SDSEEENKKEKKRKHKKKSKKQKKKSKKSKKKHDSDPDSKESGQISESIS
SKRNSKEKIEQEREEMEKSKHSNKKSEKHNETSNKDFGSNIRDRSREKIG
SDKFNNRRDEESHRRFCENDRFNNSARNNEMHRDSRRKDAYKDRDYNREF
VNDSEKEIRRQRETCKESKFTNRESRKEYREPRKESKDINKRSKSAIEIK
EGKTDLRENKDKKESRDLTRNSRDIPRESRDIPRESRDIPRESRKDQRGE
EREGRKEPKEIEKEIRKDPKILEKDSRTKRNSDIEKDAKRDIIKENVKEI
RNETKKDVKNSYINNRKESKELCKDRKEPNVTEKESQRNLKQIPKESDKE
IKRRPKESEKESENELERDKIDKLNRKHTQSSRDKERNTDKPARREYESR
SSKIDSDVHREPKEKEEKKPKSYRDNETRDGNSNKTRSANDSKYKTNERS
EPTNRQENESDRKHQKDSREKLHDGNKNPSEKNIDEKKDLKRKLSEENQV
SIDRKIQKLSENKTSTTTNNPVNTDDKKRRRNSSVDSSSSSNSSASSSSS
DSSSSSDDSQ*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
Vocabulary: INTERPRO
TermDefinition
IPR013170mRNA_splic_Cwf21_dom
Vocabulary: cellular component
TermDefinition
GO:0005634nucleus
GO:0005681spliceosomal complex
GO:0005737cytoplasm
Vocabulary: biological process
TermDefinition
GO:0006397mRNA processing
GO:0008380RNA splicing