RRP12 isoform X2

Overview
NameRRP12 isoform X2
Smed IDSMED30026629
Length (bp)4122
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of RRP12 isoform X2 (SMED30026629) t-SNE clustered cells

Violin plots show distribution of expression levels for RRP12 isoform X2 (SMED30026629) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RRP12 isoform X2 (SMED30026629) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RRP12 isoform X2 (SMED30026629) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30026629

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30026629SMESG000033633.1 SmedASXL_017053SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30026629SMESG000033633.1 SmedASXL_017053SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
neoblastSMED30026629SMESG000033633.1 dd_Smed_v4_3007_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30026629SMESG000033633.1 dd_Smed_v4_3007_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of RRP12 isoform X2 vs. Ensembl Human
Match: RRP12 (ribosomal RNA processing 12 homolog [Source:HGNC Symbol;Acc:HGNC:29100])

HSP 1 Score: 65.4698 bits (158), Expect = 7.468e-10
Identity = 45/165 (27.27%), Postives = 78/165 (47.27%), Query Frame = 3 
Query:  177 NTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLFSLPFNK-HDNIVTIGLFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKAARKCVLSVFYAKSRTVGLLSKKHP 668
            N+   + +C V+  + + I  +GG E   EYF+AL+  + + +  ++L    V  L NL+ + +P  VL K+ SD SK  + + S   +    +++   L C++ L+  Q  E+W   +   +Y  L SFT   +  + KAA+  V SV              HP
Sbjct:  117 NSAAHKEICAVLAAVTEVIRSQGGKETETEYFAALMTTMEAVESPESL--AAVAYLLNLVLKRVPSPVLIKKFSDTSKAFMDIMSAQASSGSTSVLRWVLSCLATLLRKQDLEAWGYPVTLQVYHGLLSFTVHPKPKIRKAAQHGVCSVLKGSEFMFEKAPAHHP 279
[Close]
BLAST of RRP12 isoform X2 vs. Ensembl Human
Match: RRP12 (ribosomal RNA processing 12 homolog [Source:HGNC Symbol;Acc:HGNC:29100])

HSP 1 Score: 65.4698 bits (158), Expect = 7.468e-10
Identity = 45/165 (27.27%), Postives = 78/165 (47.27%), Query Frame = 3 
Query:  177 NTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLFSLPFNK-HDNIVTIGLFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKAARKCVLSVFYAKSRTVGLLSKKHP 668
            N+   + +C V+  + + I  +GG E   EYF+AL+  + + +  ++L    V  L NL+ + +P  VL K+ SD SK  + + S   +    +++   L C++ L+  Q  E+W   +   +Y  L SFT   +  + KAA+  V SV              HP
Sbjct:  117 NSAAHKEICAVLAAVTEVIRSQGGKETETEYFAALMTTMEAVESPESL--AAVAYLLNLVLKRVPSPVLIKKFSDTSKAFMDIMSAQASSGSTSVLRWVLSCLATLLRKQDLEAWGYPVTLQVYHGLLSFTVHPKPKIRKAAQHGVCSVLKGSEFMFEKAPAHHP 279
[Close]
BLAST of RRP12 isoform X2 vs. Ensembl Zebrafish
Match: rrp12 (ribosomal RNA processing 12 homolog [Source:ZFIN;Acc:ZDB-GENE-050706-182])

HSP 1 Score: 64.3142 bits (155), Expect = 1.094e-9
Identity = 50/190 (26.32%), Postives = 92/190 (48.42%), Query Frame = 3 
Query:   69 VFYDMSDNESV--NTFASWVDTLTTCESI--ENALKKCNGNTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLFSLPFNKHDNI-VTIGLFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKAARKCVLSVF 623
            V  D  ++E++   T  +++  L+ C ++      +    N+   + +C V+  + + I  +GG E   EYF+AL+  + +    ++L    V  L NL+ + +P AVL+K+ SD +K  +   S   N +  + +   L C++ L+  Q    W       +Y  L SFT  S+  V KAA++ + SV 
Sbjct:   73 VAGDSMEDEALTEKTSGTFLSGLSDCSNLTFRKVQRYWESNSATHKEICAVLAAVTEVIRSQGGKETETEYFAALMTTLEAVDSSESLA--AVAYLLNLVMKRMPPAVLKKKFSDTAKAFMDAISNQSNSYSILYLRWILSCLATLLRKQDLSVWSYPSTLQVYHGLLSFTVHSKPKVRKAAQQGICSVL 260
[Close]
BLAST of RRP12 isoform X2 vs. Ensembl Xenopus
Match: lgals1.3 (lectin, galactoside-binding, soluble, 1, gene 3 [Source:Xenbase;Acc:XB-GENE-5849758])

HSP 1 Score: 73.559 bits (179), Expect = 2.167e-12
Identity = 128/618 (20.71%), Postives = 252/618 (40.78%), Query Frame = 3 
Query: 1584 LRKVKSTL----TEEEKMFKASAEHFLGNLIKFLGFDRVDSVVPLTEIFDPSSSMMDSLSTRTWIVPLIKSYTERTSLDRFRQLILPCIQLITKKIDSLSAPQNTMEIDNANVSPNSIAVFSLGTLRYQLWSCLPSFANQVVPGGIQQVSDNLIEPNQYPIYFPPGIDCPKVTLWQLILDLLNPAESSNLESIALTAIRNLVQTAQDKTEMKQVLTSNVLFPQIVSKLFSIYMK-----KDYGIQMKIKSTLSCYLQLFEPETFNQNCEYLISK---RLADIDTKQPSETHLSCIELLIIIGPHLSVPTIGRVTEYLSKFLSDNSVSNLIQKRVYRYFDIISASNTVTSNEYTKQNINNIIET-FKACEYVKADSWKCRMKVLHNLFKLMNTAQEISGLLNRFLLEIIHCLNVRNNKARAISGLVLVE---AILSRYEETDEETMNSVSSSIDRMLNLLISDLRNKIHDNSKDGIQCKGALSKALYLILSEDRLARSVTREHITETMSLIQEIFTELGNTNSDRNLAFCAFDILGGLLKKKTYNFD----NIHLVDVGQSLTAASHEMRIKHRISVKKILKKMLKLWDYEKIKKVIPEELIAVLRNIHKAMNRSKRSK 3377
            +RK   TL    T     +    +H +G  ++ +G + V   +PL    D +    D    R+W+VP+I+   + T L  F +  LP    +  +   LS     +E    +            TL++Q+W+ LP F  +  P  +      +       I   P +   ++T+ Q +  L+N                   ++  DK E+ +    N L       LF++Y +     +    ++ +  T+  YL +    T  Q     + K   +L + ++ +P  T L  ++L+I + P+   P++ ++   +  +L D + S  +QK+ YR  + I         E+   N+  + +T   + +   + + + R+K L ++ K +    E    +   + E++ C    +  AR  +  +L E   A L R+    +E M       ++ L ++ + L   +       I C   L+    L   +D++   V  EH+ E + L+      LG+    R +   A     G +K   +  D    +  L  + +++   + +MR   R+ +K I  K ++ + +E +K ++PE    VL NI KA  R+K+ K
Sbjct:  512 MRKCLQTLADLRTSAHFSYTGELDHAVGAAVESMGPEVVLKAIPLQ--IDGTEESCDF--PRSWLVPVIRDNVKNTELGFFTKYFLPLAAKLKNRAADLSQDGRNLEAKIYD------------TLQWQIWTMLPGFCTK--PTDVVDSFKGIARTLGMAINDRPDL---RLTVCQALRSLINKG----------------CESEADKAEVSR-FAKNFL-----PILFNVYSQPPAPGEGPSQKLPVLDTVKAYLTI----TDQQMVSGFLDKATVKLTEAESAEP--TRLYMLDLIIAMAPYADEPSMTKIYHTILPYLEDKNHS--LQKKAYRVLEEICGGEQPPCKEFVNNNLEELKKTLLTSLKSASSPAKRPRLKCLIHIVKQLAADHE--EFITSLIPEVMICTREVSVGARKNAYTLLAEIGYAFL-RFNHDQKEAM-------EQYLAVVYAGLTGSV-----TMISC-AVLTLTRLLFEFKDQMGLQVI-EHLLENVCLL------LGSRT--REVVKAAL----GFIKVIIFIMDIKVLSKQLQMMMEAIGNINSDMRRFFRVKLKNIFTKFIRKFGFELVKSMLPEAYHKVLVNIRKAEARNKKQK 1049

HSP 2 Score: 56.225 bits (134), Expect = 5.000e-7
Identity = 40/150 (26.67%), Postives = 75/150 (50.00%), Query Frame = 3 
Query:  177 NTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLF-SLPFNKHDNIVTIGLFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKAARKCVLSVF 623
            N+   + +C V+  + + I  +GG E   EYF+AL+  + + +  ++L    V  L NL+ + +P  VL K+ SD SK ++ +  S   +   + +   + C++ L+  Q   +W       +Y  L SFT  ++  + KAA+  V S+ 
Sbjct:  118 NSAAHKEICAVLAAVTEVIRSQGGKESETEYFAALMTTLEAVESPESLA--AVTYLLNLVLKRVPGPVLIKKFSDTSKALMDIMASQASSGSTSAMRWIVSCLAVLLRKQDLLTWSYPSTLQVYHGLLSFTVHAKPKIRKAAQLGVCSIL 265
[Close]
BLAST of RRP12 isoform X2 vs. Ensembl Xenopus
Match: lgals1.3 (lectin, galactoside-binding, soluble, 1, gene 3 [Source:Xenbase;Acc:XB-GENE-5849758])

HSP 1 Score: 73.1738 bits (178), Expect = 3.244e-12
Identity = 128/618 (20.71%), Postives = 252/618 (40.78%), Query Frame = 3 
Query: 1584 LRKVKSTL----TEEEKMFKASAEHFLGNLIKFLGFDRVDSVVPLTEIFDPSSSMMDSLSTRTWIVPLIKSYTERTSLDRFRQLILPCIQLITKKIDSLSAPQNTMEIDNANVSPNSIAVFSLGTLRYQLWSCLPSFANQVVPGGIQQVSDNLIEPNQYPIYFPPGIDCPKVTLWQLILDLLNPAESSNLESIALTAIRNLVQTAQDKTEMKQVLTSNVLFPQIVSKLFSIYMK-----KDYGIQMKIKSTLSCYLQLFEPETFNQNCEYLISK---RLADIDTKQPSETHLSCIELLIIIGPHLSVPTIGRVTEYLSKFLSDNSVSNLIQKRVYRYFDIISASNTVTSNEYTKQNINNIIET-FKACEYVKADSWKCRMKVLHNLFKLMNTAQEISGLLNRFLLEIIHCLNVRNNKARAISGLVLVE---AILSRYEETDEETMNSVSSSIDRMLNLLISDLRNKIHDNSKDGIQCKGALSKALYLILSEDRLARSVTREHITETMSLIQEIFTELGNTNSDRNLAFCAFDILGGLLKKKTYNFD----NIHLVDVGQSLTAASHEMRIKHRISVKKILKKMLKLWDYEKIKKVIPEELIAVLRNIHKAMNRSKRSK 3377
            +RK   TL    T     +    +H +G  ++ +G + V   +PL    D +    D    R+W+VP+I+   + T L  F +  LP    +  +   LS     +E    +            TL++Q+W+ LP F  +  P  +      +       I   P +   ++T+ Q +  L+N                   ++  DK E+ +    N L       LF++Y +     +    ++ +  T+  YL +    T  Q     + K   +L + ++ +P  T L  ++L+I + P+   P++ ++   +  +L D + S  +QK+ YR  + I         E+   N+  + +T   + +   + + + R+K L ++ K +    E    +   + E++ C    +  AR  +  +L E   A L R+    +E M       ++ L ++ + L   +       I C   L+    L   +D++   V  EH+ E + L+      LG+    R +   A     G +K   +  D    +  L  + +++   + +MR   R+ +K I  K ++ + +E +K ++PE    VL NI KA  R+K+ K
Sbjct:  497 MRKCLQTLADLRTSAHFSYTGELDHAVGAAVESMGPEVVLKAIPLQ--IDGTEESCDF--PRSWLVPVIRDNVKNTELGFFTKYFLPLAAKLKNRAADLSQDGRNLEAKIYD------------TLQWQIWTMLPGFCTK--PTDVVDSFKGIARTLGMAINDRPDL---RLTVCQALRSLINKG----------------CESEADKAEVSR-FAKNFL-----PILFNVYSQPPAPGEGPSQKLPVLDTVKAYLTI----TDQQMVSGFLDKATVKLTEAESAEP--TRLYMLDLIIAMAPYADEPSMTKIYHTILPYLEDKNHS--LQKKAYRVLEEICGGEQPPCKEFVNNNLEELKKTLLTSLKSASSPAKRPRLKCLIHIVKQLAADHE--EFITSLIPEVMICTREVSVGARKNAYTLLAEIGYAFL-RFNHDQKEAM-------EQYLAVVYAGLTGSV-----TMISC-AVLTLTRLLFEFKDQMGLQVI-EHLLENVCLL------LGSRT--REVVKAAL----GFIKVIIFIMDIKVLSKQLQMMMEAIGNINSDMRRFFRVKLKNIFTKFIRKFGFELVKSMLPEAYHKVLVNIRKAEARNKKQK 1034

HSP 2 Score: 53.9138 bits (128), Expect = 2.446e-6
Identity = 40/150 (26.67%), Postives = 73/150 (48.67%), Query Frame = 3 
Query:  177 NTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLF-SLPFNKHDNIVTIGLFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKAARKCVLSVF 623
            N+   + +C V+  + + I  +GG E   EYF+AL+  + + +  ++L    V  L NL+ + +P  VL K+ SD SK ++ +  S   +   + +   + C++ L+  Q   +W       +Y  L SFT  ++  V K A   V S+ 
Sbjct:  103 NSAAHKEICAVLAAVTEVIRSQGGKESETEYFAALMTTLEAVESPESLA--AVTYLLNLVLKRVPGPVLIKKFSDTSKALMDIMASQASSGSTSAMRWIVSCLAVLLRKQDLLTWSYPSTLQVYHGLLSFTVHAKPKVRKTATLGVCSIL 250
[Close]
BLAST of RRP12 isoform X2 vs. Ensembl Xenopus
Match: lgals1.3 (lectin, galactoside-binding, soluble, 1, gene 3 [Source:Xenbase;Acc:XB-GENE-5849758])

HSP 1 Score: 72.0182 bits (175), Expect = 6.277e-12
Identity = 118/596 (19.80%), Postives = 236/596 (39.60%), Query Frame = 3 
Query: 1626 FKASAEHFLGNLIKFLGFDRVDSVVPLTEIFDPSSSMMDSLSTRTWIVPLIKSYTERTSLDRFRQLILPCIQLITKKIDSLSAPQNTMEIDNANVSPNSIAVFSLGTLRYQLWSCLPSFANQVVPGGIQQVSDNLIEPNQYPIYFPPGIDCPKVTLWQLILDLLNPAESSNLESIALTAIRNLVQTAQDKTEMKQVLTSNVLFPQIVSKLFSIYMK-----KDYGIQMKIKSTLSCYLQLFEPETFNQNCEYLISK---RLADIDTKQPSETHLSCIELLIIIGPHLSVPTIGRVTEYLSKFLSDNSVSNLIQKRVYRYFDIISASNTVTSNEYTKQNINNIIET-FKACEYVKADSWKCRMKVLHNLFKLMNTAQEISGLLNRFLLEIIHCLNVRNNKARAISGLVLVE---AILSRYEETDEETMNSVSSSIDRMLNLLISDLRNKIHDNSKDGIQCKGALSKALYLILSEDRLARSVTREHITETMSLIQEIFTELGNTNSDRNLAFCAFDILGGLLKKKTYNFDNIHLVDVGQSLTAASHEMRIKHRISVKKILKKMLKLWDYEKIKKVIPEELIAVLRNIHKAMNRSKRSK 3377
            +    +H +G  ++ +G + V   +PL    D +    D    R+W+VP+I+   + T L  F +  LP    +  +   LS     +E    +            TL++Q+W+ LP F  +  P  +      +       I   P +   ++T+ Q +  L+N                   ++  DK E+ +    N L       LF++Y +     +    ++ +  T+  YL +    T  Q     + K   +L + ++ +P  T L  ++L+I + P+   P++ ++   +  +L D + S  +QK+ YR  + I         E+   N+  + +T   + +   + + + R+K L ++ K +    E    +   + E++ C    +  AR  +  +L E   A L   E+        ++ S+  +   +++  R       + G+Q    L + + L+L       S TRE +   +  I+ I   +               +L   L+       NI+             +MR   R+ +K I  K ++ + +E +K ++PE    VL NI KA  R+K+ K
Sbjct:  503 YTGELDHAVGAAVESMGPEVVLKAIPLQ--IDGTEESCDF--PRSWLVPVIRDNVKNTELGFFTKYFLPLAAKLKNRAADLSQDGRNLEAKIYD------------TLQWQIWTMLPGFCTK--PTDVVDSFKGIARTLGMAINDRPDL---RLTVCQALRSLINKG----------------CESEADKAEVSR-FAKNFL-----PILFNVYSQPPAPGEGPSQKLPVLDTVKAYLTI----TDQQMVSGFLDKATVKLTEAESAEP--TRLYMLDLIIAMAPYADEPSMTKIYHTILPYLEDKNHS--LQKKAYRVLEEICGGEQPPCKEFVNNNLEELKKTLLTSLKSASSPAKRPRLKCLIHIVKQLAADHE--EFITSLIPEVMICTREVSVGARKNAYTLLAEIGYAFLQAMEQYLAVVYAGLTGSVTMISCAVLTLTRLLFEFKDQMGLQVIEHLLENVCLLLG------SRTREVVKAALGFIKVIIFIMD------------IKVLSKQLQMMMEAIGNIN------------SDMRRFFRVKLKNIFTKFIRKFGFELVKSMLPEAYHKVLVNIRKAEARNKKQK 1015
[Close]
BLAST of RRP12 isoform X2 vs. Ensembl Xenopus
Match: lgals1.3 (lectin, galactoside-binding, soluble, 1, gene 3 [Source:Xenbase;Acc:XB-GENE-5849758])

HSP 1 Score: 72.0182 bits (175), Expect = 7.671e-12
Identity = 118/634 (18.61%), Postives = 252/634 (39.75%), Query Frame = 3 
Query: 1509 PKICELRDSFEDTEAEAVASLTADRLRKVKSTLTEEEKMFKASAEHFLGNLIKFLGFDRVDSVVPLTEIFDPSSSMMDSLSTRTWIVPLIKSYTERTSLDRFRQLILPCIQLITKKIDSLSAPQNTMEIDNANVSPNSIAVFSLGTLRYQLWSCLPSFANQVVPGGIQQVSDNLIEPNQYPIYFPPGIDCPKVTLWQLILDLLNPAESSNLESIALTAIRNLVQTAQDKTEMKQVLTSNVLFPQIVSKLFSIYMK-----KDYGIQMKIKSTLSCYLQLFEPETFNQNCEYLISK---RLADIDTKQPSETHLSCIELLIIIGPHLSVPTIGRVTEYLSKFLSDNSVSNLIQKRVYRYFDIISASNTVTSNEYTKQNINNIIET-FKACEYVKADSWKCRMKVLHNLFKLMNTAQEISGLLNRFLLEIIHCLNVRNNKAR--AISGLVLVEAILSRYEETDEETMNSVSSSIDRMLNLLISDLRNKIHDNSKDGIQCKGALSKALYLILSEDRLARSVTREHITETMSLIQEIFTELGNTNSDRNLAFCAFDILGGLLKKKTYNFDNIHLVDVGQSLTAASHEMRIKHRISVKKILKKMLKLWDYEKIKKVIPEELIAVLRNIHKAMNRSKRSK 3377
            P + ++  +F +   +         L+ +    T     +    +H +G  ++ +G + V   +PL    D +    D    R+W+VP+I+   + T L  F +  LP    +  +   LS     +E    +            TL++Q+W+ LP F  +  P  +      +       I   P +   ++T+ Q +  L+N                   ++  DK E+ +    N L       LF++Y +     +    ++ +  T+  YL +    T  Q     + K   +L + ++ +P  T L  ++L+I + P+   P++ ++   +  +L D + S  +QK+ YR  + I         E+   N+  + +T   + +   + + + R+K L ++ K +    E    +   + E++ C    +  AR  A + L  +     R+    +E M    + +   L   ++ +   +   ++   + KG     +++I            EH+ E + L+      LG+    R +   A   +  ++        +  L  + +++   + +MR   R+ +K I  K ++ + +E +K ++PE    VL NI KA  R+K+ K
Sbjct:  483 PYVLQVLQTFFEAAGKNCHPFMRKCLQTLADLRTSAHFSYTGELDHAVGAAVESMGPEVVLKAIPLQ--IDGTEESCDF--PRSWLVPVIRDNVKNTELGFFTKYFLPLAAKLKNRAADLSQDGRNLEAKIYD------------TLQWQIWTMLPGFCTK--PTDVVDSFKGIARTLGMAINDRPDL---RLTVCQALRSLINKG----------------CESEADKAEVSR-FAKNFL-----PILFNVYSQPPAPGEGPSQKLPVLDTVKAYLTI----TDQQMVSGFLDKATVKLTEAESAEP--TRLYMLDLIIAMAPYADEPSMTKIYHTILPYLEDKNHS--LQKKAYRVLEEICGGEQPPCKEFVNNNLEELKKTLLTSLKSASSPAKRPRLKCLIHIVKQLAADHE--EFITSLIPEVMICTREVSVGARKNAYTLLAEIGYAFLRFNHDQKEAMEQYLAVVYAGLTGSVTMISCAVLTLTRLLFEFKGRCLMLIWVI------------EHLLENVCLL------LGSRT--REVVKAALGFIKVIIFIMDIKVLSKQLQMMMEAIGNINSDMRRFFRVKLKNIFTKFIRKFGFELVKSMLPEAYHKVLVNIRKAEARNKKQK 1043
[Close]
BLAST of RRP12 isoform X2 vs. Ensembl Xenopus
Match: lgals1.3 (lectin, galactoside-binding, soluble, 1, gene 3 [Source:Xenbase;Acc:XB-GENE-5849758])

HSP 1 Score: 71.2478 bits (173), Expect = 1.214e-11
Identity = 122/617 (19.77%), Postives = 249/617 (40.36%), Query Frame = 3 
Query: 1584 LRKVKSTL----TEEEKMFKASAEHFLGNLIKFLGFDRVDSVVPLTEIFDPSSSMMDSLSTRTWIVPLIKSYTERTSLDRFRQLILPCIQLITKKIDSLSAPQNTMEIDNANVSPNSIAVFSLGTLRYQLWSCLPSFANQVVPGGIQQVSDNLIEPNQYPIYFPPGIDCPKVTLWQLILDLLNPAESSNLESIALTAIRNLVQTAQDKTEMKQVLTSNVLFPQIVSKLFSIYMK-----KDYGIQMKIKSTLSCYLQLFEPETFNQNCEYLISK---RLADIDTKQPSETHLSCIELLIIIGPHLSVPTIGRVTEYLSKFLSDNSVSNLIQKRVYRYFDIISASNTVTSNEYTKQNINNIIET-FKACEYVKADSWKCRMKVLHNLFKLMNTAQEISGLLNRFLLEIIHCLNVRNNKARAISGLVLVEAILS--RYEETDEETMNSVSSSIDRMLNLLISDLRNKIHDNSKDGIQCKGALSKALYLILSEDRLARSVTREHITETMSLIQEIFTELGNTNSDRNLAFCAFDILGGLLKKKTYNFD----NIHLVDVGQSLTAASHEMRIKHRISVKKILKKMLKLWDYEKIKKVIPEELIAVLRNIHKAMNRSKRSK 3377
            +RK   TL    T     +    +H +G  ++ +G + V   +PL    D +    D    R+W+VP+I+   + T L  F +  LP    +  +   LS     +E    +            TL++Q+W+ LP F  +  P  +      +       I   P +   ++T+ Q +  L+N                   ++  DK E+ +    N L       LF++Y +     +    ++ +  T+  YL +    T  Q     + K   +L + ++ +P  T L  ++L+I + P+   P++ ++   +  +L D + S  +QK+ YR  + I         E+   N+  + +T   + +   + + + R+K L ++ K +    E    +   + E++ C    +  AR  +  +L E   +  R+    +E M    + +   L   ++ +   +   ++   + KG     +++I            EH+ E + L+      LG+    R +   A     G +K   +  D    +  L  + +++   + +MR   R+ +K I  K ++ + +E +K ++PE    VL NI KA  R+K+ K
Sbjct:  512 MRKCLQTLADLRTSAHFSYTGELDHAVGAAVESMGPEVVLKAIPLQ--IDGTEESCDF--PRSWLVPVIRDNVKNTELGFFTKYFLPLAAKLKNRAADLSQDGRNLEAKIYD------------TLQWQIWTMLPGFCTK--PTDVVDSFKGIARTLGMAINDRPDL---RLTVCQALRSLINKG----------------CESEADKAEVSR-FAKNFL-----PILFNVYSQPPAPGEGPSQKLPVLDTVKAYLTI----TDQQMVSGFLDKATVKLTEAESAEP--TRLYMLDLIIAMAPYADEPSMTKIYHTILPYLEDKNHS--LQKKAYRVLEEICGGEQPPCKEFVNNNLEELKKTLLTSLKSASSPAKRPRLKCLIHIVKQLAADHE--EFITSLIPEVMICTREVSVGARKNAYTLLAEIGYAFLRFNHDQKEAMEQYLAVVYAGLTGSVTMISCAVLTLTRLLFEFKGRCLMLIWVI------------EHLLENVCLL------LGSRT--REVVKAAL----GFIKVIIFIMDIKVLSKQLQMMMEAIGNINSDMRRFFRVKLKNIFTKFIRKFGFELVKSMLPEAYHKVLVNIRKAEARNKKQK 1051

HSP 2 Score: 56.225 bits (134), Expect = 4.976e-7
Identity = 40/150 (26.67%), Postives = 75/150 (50.00%), Query Frame = 3 
Query:  177 NTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLF-SLPFNKHDNIVTIGLFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKAARKCVLSVF 623
            N+   + +C V+  + + I  +GG E   EYF+AL+  + + +  ++L    V  L NL+ + +P  VL K+ SD SK ++ +  S   +   + +   + C++ L+  Q   +W       +Y  L SFT  ++  + KAA+  V S+ 
Sbjct:  118 NSAAHKEICAVLAAVTEVIRSQGGKESETEYFAALMTTLEAVESPESLA--AVTYLLNLVLKRVPGPVLIKKFSDTSKALMDIMASQASSGSTSAMRWIVSCLAVLLRKQDLLTWSYPSTLQVYHGLLSFTVHAKPKIRKAAQLGVCSIL 265
[Close]
BLAST of RRP12 isoform X2 vs. Ensembl Mouse
Match: Rrp12 (ribosomal RNA processing 12 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2147437])

HSP 1 Score: 73.1738 bits (178), Expect = 2.686e-12
Identity = 110/555 (19.82%), Postives = 225/555 (40.54%), Query Frame = 3 
Query: 1755 RTWIVPLIKSYTERTSLDRFRQLILPCIQLITKKIDSLSAPQNTMEIDNANVSPNSIAVFSLGTLRYQLWSCLPSFANQVVPGGIQQVSDNLIEPNQYPIYFPPGIDCPKVTLWQLILDLLNPAESSNLESIALTAIRNLV----QTAQDKTEMKQVLTSNVLFPQIVSKLFS--IYMKKDYGIQMKIKSTLSCYLQLFEPETFNQNCEYLISKRLADIDTKQPSETHLSCIELLIIIGPHLSVPTIGRVTEYLSKFLSDNSVSNLIQKRVYRYFDIISASNTVTSNEYTKQNINNIIET-FKACEYVKADSWKCRMKVLHNLFKLMNTAQEISGLLNRFLLEIIHCLNVRNNKARAISGLVLVE---AILSRYEETDEETMNSVSSSIDRMLNLLISDLRNKIHDNSKDGIQCKGALSKALYLILSEDRLARSVTREHITETMSLIQEIFTELGNTNSDRNLAFCAFDILGGLLKKKTYNFDNIHLVD----VGQSLTAASHEMRIKHRISVKKILKKMLKLWDYEKIKKVIPEELIAVLRNIHKAMNRSKRSK 3377
            R+W++P+I+ +   T L  F    LP    + +K   L+   +T+E    +            TL++Q+W+ LP F  +                       P  +      L + +   +N  E  +L      A+R L+    +   D+ E+ +   +   F  I+  L+   +   +    +  +  T+  YL + E +  N   E    K L   D      T LS ++L++ + P+     I ++   +  +L   S  + +QK+ YR  + + AS+   +  + + +++++ +T   +     + + + R+K L ++ K ++   E    +   + E+I C    +  AR  +  +LVE   A L R+    E+       ++ R L L+   L   +       + C  ++    +L+     L  + T E + E + L+          +  R++   A     G +K      D +HL      V +++   S +MR   R+ ++ +  K  + + +E +K ++P E   VL NI KA  R+K+ +
Sbjct:  567 RSWLLPVIRDHVRETRLGFFTTYFLPLATTLKRKAMDLAQAGSTVESKIYD------------TLQWQIWTLLPGFCTR-----------------------PTDVAASFKGLARTLGTAIN--ERPDLRVTVCQALRTLITKGCEAEADRAEVSRFAKN---FLPILFNLYGQPVAAGEAAAPRRAVLETIKTYLTITEAQLVNSFLEKATEKVL---DPASSDFTRLSVLDLVVALAPYSDEAAISKLYSTIRPYL--ESKVHGVQKKAYRVLEEVCASSQGPAARFVQSHLDDLKKTLLDSLRTTSSPAKRPRLKCLIHIVKTLSAEHE--EFIAALIPEVILCTKEVSVGARKSAFTLLVEMGHAFL-RFGSNQED-------ALQRYLVLIYPGLLGAV-----TTVSC--SILALTHLLFEFKGLMGTSTVEQLLENVCLLL--------ASRTRDVVKSAL----GFIKVAVVVMDVVHLAKHVQLVMEAIGKLSDDMRRHFRMKLRNLFIKFTRKFGFELVKGLLPAEYHKVLINIRKAETRAKKHR 1047

HSP 2 Score: 65.4698 bits (158), Expect = 5.625e-10
Identity = 46/164 (28.05%), Postives = 79/164 (48.17%), Query Frame = 3 
Query:  177 NTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLFSLPFNK-HDNIVTIGLFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKAARKCVLSVFYAKSRTVGLLSKKH 665
            N+   + +C V+  + + I  +GG E   EYF+AL+  + + +  ++L    V  L NL+ + +P  VL K+ SD SK  + + S   +    + +   L C++ L+  Q  E+W   I   +Y  L SFT  ++  + KAA+  V SV        G  +  H
Sbjct:  117 NSAAHKEICAVLAAVTEVIRSQGGKETETEYFAALMTTMEAVESPESL--AAVAYLLNLVLKRVPSPVLMKKFSDTSKAFMDIMSAQASSGSTSALRWVLSCLAILLRKQDLEAWGYPITLQVYHGLLSFTVHAKPKIRKAAQHGVCSVLKGSDFMFGEKAPAH 278
[Close]
BLAST of RRP12 isoform X2 vs. UniProt/SwissProt
Match: sp|Q6P5B0|RRP12_MOUSE (RRP12-like protein OS=Mus musculus OX=10090 GN=Rrp12 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.879e-11
Identity = 110/555 (19.82%), Postives = 225/555 (40.54%), Query Frame = 3 
Query: 1755 RTWIVPLIKSYTERTSLDRFRQLILPCIQLITKKIDSLSAPQNTMEIDNANVSPNSIAVFSLGTLRYQLWSCLPSFANQVVPGGIQQVSDNLIEPNQYPIYFPPGIDCPKVTLWQLILDLLNPAESSNLESIALTAIRNLV----QTAQDKTEMKQVLTSNVLFPQIVSKLFS--IYMKKDYGIQMKIKSTLSCYLQLFEPETFNQNCEYLISKRLADIDTKQPSETHLSCIELLIIIGPHLSVPTIGRVTEYLSKFLSDNSVSNLIQKRVYRYFDIISASNTVTSNEYTKQNINNIIET-FKACEYVKADSWKCRMKVLHNLFKLMNTAQEISGLLNRFLLEIIHCLNVRNNKARAISGLVLVE---AILSRYEETDEETMNSVSSSIDRMLNLLISDLRNKIHDNSKDGIQCKGALSKALYLILSEDRLARSVTREHITETMSLIQEIFTELGNTNSDRNLAFCAFDILGGLLKKKTYNFDNIHLVD----VGQSLTAASHEMRIKHRISVKKILKKMLKLWDYEKIKKVIPEELIAVLRNIHKAMNRSKRSK 3377
            R+W++P+I+ +   T L  F    LP    + +K   L+   +T+E    +            TL++Q+W+ LP F  +                       P  +      L + +   +N  E  +L      A+R L+    +   D+ E+ +   +   F  I+  L+   +   +    +  +  T+  YL + E +  N   E    K L   D      T LS ++L++ + P+     I ++   +  +L   S  + +QK+ YR  + + AS+   +  + + +++++ +T   +     + + + R+K L ++ K ++   E    +   + E+I C    +  AR  +  +LVE   A L R+    E+       ++ R L L+   L   +       + C  ++    +L+     L  + T E + E + L+          +  R++   A     G +K      D +HL      V +++   S +MR   R+ ++ +  K  + + +E +K ++P E   VL NI KA  R+K+ +
Sbjct:  567 RSWLLPVIRDHVRETRLGFFTTYFLPLATTLKRKAMDLAQAGSTVESKIYD------------TLQWQIWTLLPGFCTR-----------------------PTDVAASFKGLARTLGTAIN--ERPDLRVTVCQALRTLITKGCEAEADRAEVSRFAKN---FLPILFNLYGQPVAAGEAAAPRRAVLETIKTYLTITEAQLVNSFLEKATEKVL---DPASSDFTRLSVLDLVVALAPYSDEAAISKLYSTIRPYL--ESKVHGVQKKAYRVLEEVCASSQGPAARFVQSHLDDLKKTLLDSLRTTSSPAKRPRLKCLIHIVKTLSAEHE--EFIAALIPEVILCTKEVSVGARKSAFTLLVEMGHAFL-RFGSNQED-------ALQRYLVLIYPGLLGAV-----TTVSC--SILALTHLLFEFKGLMGTSTVEQLLENVCLLL--------ASRTRDVVKSAL----GFIKVAVVVMDVVHLAKHVQLVMEAIGKLSDDMRRHFRMKLRNLFIKFTRKFGFELVKGLLPAEYHKVLINIRKAETRAKKHR 1047

HSP 2 Score: 65.4698 bits (158), Expect = 3.935e-9
Identity = 46/164 (28.05%), Postives = 79/164 (48.17%), Query Frame = 3 
Query:  177 NTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLFSLPFNK-HDNIVTIGLFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKAARKCVLSVFYAKSRTVGLLSKKH 665
            N+   + +C V+  + + I  +GG E   EYF+AL+  + + +  ++L    V  L NL+ + +P  VL K+ SD SK  + + S   +    + +   L C++ L+  Q  E+W   I   +Y  L SFT  ++  + KAA+  V SV        G  +  H
Sbjct:  117 NSAAHKEICAVLAAVTEVIRSQGGKETETEYFAALMTTMEAVESPESL--AAVAYLLNLVLKRVPSPVLMKKFSDTSKAFMDIMSAQASSGSTSALRWVLSCLAILLRKQDLEAWGYPITLQVYHGLLSFTVHAKPKIRKAAQHGVCSVLKGSDFMFGEKAPAH 278
[Close]
BLAST of RRP12 isoform X2 vs. UniProt/SwissProt
Match: sp|Q5JTH9|RRP12_HUMAN (RRP12-like protein OS=Homo sapiens OX=9606 GN=RRP12 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 3.587e-9
Identity = 45/165 (27.27%), Postives = 78/165 (47.27%), Query Frame = 3 
Query:  177 NTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLFSLPFNK-HDNIVTIGLFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKAARKCVLSVFYAKSRTVGLLSKKHP 668
            N+   + +C V+  + + I  +GG E   EYF+AL+  + + +  ++L    V  L NL+ + +P  VL K+ SD SK  + + S   +    +++   L C++ L+  Q  E+W   +   +Y  L SFT   +  + KAA+  V SV              HP
Sbjct:  117 NSAAHKEICAVLAAVTEVIRSQGGKETETEYFAALMTTMEAVESPESL--AAVAYLLNLVLKRVPSPVLIKKFSDTSKAFMDIMSAQASSGSTSVLRWVLSCLATLLRKQDLEAWGYPVTLQVYHGLLSFTVHPKPKIRKAAQHGVCSVLKGSEFMFEKAPAHHP 279
[Close]
BLAST of RRP12 isoform X2 vs. UniProt/SwissProt
Match: sp|Q5ZKD5|RRP12_CHICK (RRP12-like protein OS=Gallus gallus OX=9031 GN=RRP12 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 3.083e-7
Identity = 44/164 (26.83%), Postives = 75/164 (45.73%), Query Frame = 3 
Query:  177 NTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLFS-LPFNKHDNIVTIGLFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKAARKCVLSVFYAKSRTVGLLSKKH 665
            N+   + +C V+  +   I  +GG E   EYF+AL+  + +   D       V  L NL+ + +P  VL K+ SD SK  +++ S    +   + +   L C++ L+  Q   +W   +   +Y  L SF   ++  V KAA+  V SV        G  + +H
Sbjct:  119 NSAAHKEICAVLAAVTDVIRSQGGKETETEYFAALMTTLEA--VDSPESVAAVAYLLNLVLKRVPSPVLIKKFSDASKAFMNIISSQACSGSTSALRWVLSCLATLLRKQDLAAWSYPVTLQVYHGLLSFCVHTKPKVRKAAQHGVCSVLRGSEFMFGDEAPEH 280
[Close]
BLAST of RRP12 isoform X2 vs. TrEMBL
Match: A0A2H1C099 (Uncharacterized protein OS=Fasciola hepatica OX=6192 GN=D915_12930 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.264e-16
Identity = 58/218 (26.61%), Postives = 110/218 (50.46%), Query Frame = 3 
Query:   84 SDNESVNTFASWVDTLTTCES--IENALKKCNGNTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLFSLPFNKHDNIVTIG---LFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKAARKCVLSVFYAK--SRTVGLLSKKHPLNRETINILTNSVRTQ 716
            S+ +S  +F SW   +T C +      + +   N+ +Q+    V+  +   I  K G E S EY++AL+  + +P    N      Y+LK +M + IP A+LR   S+ SKII+ + +    ++ +  TI    L C+ +L+  Q  ++W  + V H++R +  F ++ + ++ KA+   VL +      +   G +S  HP + +T + L +S+R +
Sbjct:    3 SNCDSPGSFVSWTSNVTKCSNPVFNGVMCRSWSNSSMQQDALTVLTGITDLIRRKNGKESSAEYYAALLTALNTPS---NTKAAEAYLLKLVMSKAIPDALLRATFSEASKIIIHILTSSIMENPSASTILKSLLICLGRLLRAQGRDAWSTESVRHVFRYILRFVDNEKPAIRKASHTAVLDILIGNLDAEETGFVS--HPASHQTQDYLCSSIRRE 215
[Close]
BLAST of RRP12 isoform X2 vs. TrEMBL
Match: A0A5K3FL93 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.438e-15
Identity = 61/204 (29.90%), Postives = 109/204 (53.43%), Query Frame = 3 
Query:   96 SVNTFASWVDTLTTCE--SIENALKKCNGNTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLFSLPFNKHDNIVTIG---LFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKAARKCVLSVFYAK-SRTVGLLSKKHPLNRETIN 689
            S  TFASW   +T C   +    L +   N +LQ++V  V+  + K I  +GGTE + EY++AL++L+ +    K       Y+L+ ++ + +P+++LRK  S+ SK I ++ S    +    V++    L  + +++  QP E W  + V H +R L  FT++  A++ KAA + +  +  +  SR  G     HP+ R+T+N
Sbjct:    4 SGETFASWATHVTRCSNPTFNRVLNRLWSNPQLQKNVLAVLTGVTKLIQSRGGTESAAEYYAALLSLLNTNSSTKAAE---AYLLRLVVSKAVPVSLLRKTCSEASKTITNVLSAALQEEPLDVSMCKSLLVALGRVLVAQPSEDWASESVRHNFRILLQFTDNENATLRKAAHRIISELLASTLSREDGF----HPVCRQTMN 200
[Close]
BLAST of RRP12 isoform X2 vs. TrEMBL
Match: G7YL66 (Ribosomal RNA-processing protein 12 OS=Clonorchis sinensis OX=79923 GN=CLF_110797 PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.119e-15
Identity = 107/412 (25.97%), Postives = 187/412 (45.39%), Query Frame = 3 
Query:   69 VFYDMSDNESVNTFASWVDTLTTCE--SIENALKKCNGNTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLFSLPFNKHDNIVTIG--LFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKA---ARKCVLSVFYAKSRTVGLLSKKHPLNRETIN----ILTNSVRTQNAVNKKSEYKDIKVKPSPDDDRLSFSLSMIAGI---LKSKLFNG--ECVVXXXXXXXXXXXXXQIVPIQLQILDILSELFLKR----VLFPEQTARVLTSLFSYLNLCSAKSNNKNSSTPIPSFFVG----GNWLKTVVTGFESLLLNDEPTFTDS-ESNSLMNCRIIALTHGTNLVKFCSDWLL 1229
            +  D SD  +V +F SW   +T C   + +  L +   ++  Q+ V  V+  + K I +KGGTE + EY++AL+   L+ Q      E   Y+LK ++ + +P  +LR   ++ +KII+ L   P +  ++I+     + C+ +L+S Q  ESW L+ V H+YR L  F +  +  V K+   A + +L+V + +S      +K HP   +T+     I+   VR   AV +  E   +         RL   L ++  I   L SK      EC++  +E     ++S     +Q         LF  R     L  +  AR+LT+L++Y     A      ++T   + F G     +W++ V  G   L       F D+ ++ + +  + + L H   L+K   D L+
Sbjct:   31 ISMDQSDGSAV-SFLSWATNVTKCSNPAFDTVLSRSWTDSGRQQDVLTVLTGITKLIHDKGGTESAAEYYAALLT-ALNTQSTTKAAE--AYLLKLIICRAVPDLLLRSTFAEAAKIIVHLLGAPGSNTEDIILCKSLIVCLGRLLSAQLRESWSLESVRHIYRHLLRFVDHEKPPVRKSSHIAVRTILNVTFNES-----TAKFHPACHQTVESLCTIIRQEVRQLVAVLRTKEVHCV---------RLLHCLELLTSILPLLPSKEVKAACECILELVEFPNPLVVSKAFSSVQ--------SLFENRPSVECLSVDLAARLLTALYTYRPGDPAIFEVSTAATDAKTGFTGLEVLVSWIRAVRAGCSYLCDLSSRVFDDTPDAVNRIGVQRLTLEHLDRLIKGLLDLLM 416
[Close]
BLAST of RRP12 isoform X2 vs. TrEMBL
Match: A0A074ZY29 (NUC173 domain-containing protein OS=Opisthorchis viverrini OX=6198 GN=T265_13640 PE=4 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.541e-15
Identity = 109/409 (26.65%), Postives = 184/409 (44.99%), Query Frame = 3 
Query:   78 DMSDNESVNTFASWVDTLTTCE--SIENALKKCNGNTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLFSLPFNKHDNIVTIG--LFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKA---ARKCVLSVFYAKSRTVGLLSKKHPLNRETIN----ILTNSVRTQNAVNKKSEYKDIKVKPSPDDDRLSFSLSMIAGI---LKSKLFNG--ECVVXXXXXXXXXXXXXQIVPIQLQILDILSELFLKR----VLFPEQTARVLTSLFSYLNLCSAKSNNKNSSTPIPSFFVG----GNWLKTVVTGFESLLLNDEPTFTD-SESNSLMNCRIIALTHGTNLVKFCSDWLL 1229
            + SD   V +F SW   +T C   + +  L +   +   Q+ V  V+  + K I +KGGTE + EY++AL+   L+ QF     E   Y+LK ++ + +P  +LR   ++ +KII+ L   P +   +I+     + C+ +L+S Q  ESW L+ V H+YR L  F +  +  V K+   A + +L+V + +       +K HP   +T+     I+   VR   AV +  E   I         RL   L ++  I   L SK      EC++  +E     ++S     +Q         LF  R     L  +  AR+LT+L++Y     A      ++T   + F G     +W++ V  G   L       F D S++ + +  + +AL H   L+K   D L+
Sbjct:    2 NQSDGSPV-SFLSWATNVTKCSNPAFDTVLSRSWTDMGRQQDVLTVLTGITKLIHDKGGTESAAEYYAALLT-ALNTQFTTKAAE--AYLLKLIVCRAVPDLLLRSTFAEAAKIIVHLLGAPGSNTVDIILCKSLIVCLGRLLSAQLRESWSLESVRHIYRHLLRFVDHEKPPVRKSSHVAVRTILNVAFNEG-----TAKFHPACHQTVESLCTIIRQEVRQLVAVLRTKEVHCI---------RLLHCLELLTSILPLLPSKEVKAACECILELVEFPNPLVVSKAFGSVQ--------SLFENRPSVECLSVDLAARLLTALYTYRPGDPAIFEVSTAATDAKTGFTGVEVLVSWIRAVRAGCSYLCDLTSRVFDDTSDAVNRIGVQRLALEHLDRLIKGLLDLLM 384
[Close]
BLAST of RRP12 isoform X2 vs. TrEMBL
Match: A0A4S2MEI2 (NUC173 domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_000613 PE=4 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.570e-14
Identity = 110/409 (26.89%), Postives = 183/409 (44.74%), Query Frame = 3 
Query:   78 DMSDNESVNTFASWVDTLTTCE--SIENALKKCNGNTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLFSLPFNKHDNIVTIG--LFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKA---ARKCVLSVFYAKSRTVGLLSKKHPLNRETIN----ILTNSVRTQNAVNKKSEYKDIKVKPSPDDDRLSFSLSMIAGI---LKSKLFNG--ECVVXXXXXXXXXXXXXQIVPIQLQILDILSELFLKR----VLFPEQTARVLTSLFSYLNLCSAKSNNKNSSTPIPSFFVG----GNWLKTVVTGFESLLLNDEPTFTD-SESNSLMNCRIIALTHGTNLVKFCSDWLL 1229
            D SD  +V +F SW   +T C   + +  L +   +   Q+ V  V+  + K I +KGGTE + EY++AL+   L+ Q      E   Y+LK ++ + +P  +LR   ++ +KII+ L   P +   +IV     + C+ +L+S Q  ESW L+ V H+YR L  F +  +  V K+   A + +L+V + +S      +K HP   +T+     I+   VR   AV +  E   I         RL   L ++  I   L SK      EC++  +E     ++S     +Q         LF  R     L  +  AR+LT+L++Y     A      ++T   + F G     +W++ V  G   L       F D S++ + +  + + L H   L K   D L+
Sbjct:    2 DQSDGSTV-SFLSWATNVTKCSNPAFDTVLSRSWTDVGRQQDVLTVLTGITKLIHDKGGTESAAEYYAALLT-ALNTQSTTKAAE--AYLLKLIICRAVPDLLLRSTFAEAAKIIVHLLGAPGSNTVDIVLCKSLIVCLGRLLSAQLRESWSLESVRHIYRHLLRFVDHEKPPVRKSSHIAVRTILNVAFNES-----TAKFHPACHQTVESLCTIIRQEVRQLVAVLRTKEVHCI---------RLLHCLELLTSILPLLPSKEVKAACECILELVEFPNPLVVSKAFGSVQ--------SLFESRPSVECLSVDLAARLLTALYTYRPGDPAIFEVSTAATDAKTGFTGLEVLVSWIRAVRAGCSYLCDLSSQVFDDTSDAVNQIGVQRLTLEHLDRLTKGLLDLLM 384
[Close]
BLAST of RRP12 isoform X2 vs. Ensembl Cavefish
Match: rrp12 (ribosomal RNA processing 12 homolog [Source:NCBI gene;Acc:103040432])

HSP 1 Score: 63.929 bits (154), Expect = 1.205e-9
Identity = 46/178 (25.84%), Postives = 86/178 (48.31%), Query Frame = 3 
Query:  102 NTFASWVDTLTTCESI--ENALKKCNGNTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLFSLPFNKHDNIVTIG--LFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKAARKCVLSVF 623
             T  +++  L+ C ++      +    N+   + +C V+  + + I  +GG E   EYF+AL+  + + +  ++L    V  L NL+ + +P AVL K+ SD +K  + + S      D++  +   L C++ L+  Q    W       +Y  L SFT  ++  V KAA++ V S+ 
Sbjct:   84 RTSGTFLSGLSDCSNLTFRKVQRYWESNSAAHKEICAVLAAVTEVIRSQGGKETETEYFAALMTTLEAVESSESLA--AVAYLLNLVMKRVPAAVLIKKFSDTAKAFMEVMSKQAGT-DSVSAVRWILSCLATLLRKQDLSVWGYPSTLQVYHGLLSFTVHAKPKVRKAAQQGVCSIL 258
[Close]
BLAST of RRP12 isoform X2 vs. Ensembl Sea Lamprey
Match: rrp12 (ribosomal RNA processing 12 homolog [Source:ZFIN;Acc:ZDB-GENE-050706-182])

HSP 1 Score: 64.6994 bits (156), Expect = 1.335e-10
Identity = 44/182 (24.18%), Postives = 87/182 (47.80%), Query Frame = 3 
Query:   78 DMSDNESVNTFASWVDTLTTCESIENALKKCNGNTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLFSLPFNKHDNIVTIGLF-CMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKAARKCVLSV 620
            D +   +  TF S +  +T   +     +    ++   + +C V+  + + I  KGGTE   EYF+A +  + + + +++L    V  L N++ + +P +VL+K+ SD+SK+ + L S   N   + V   +  C + L+  Q    W      + +  L SF   ++  V +A ++ V +V
Sbjct:   85 DAASERTAGTFLSGLSDITNA-TFGRVQRYWQSSSAAHKEICAVLAAVTEVIRSKGGTETETEYFAAFMTALETIESEESL--AAVAYLLNMVIKRVPSSVLKKKFSDISKVFVDLMSTHTNSATSTVLRWILSCTAVLLRKQDLSVWADASTMNTFHALLSFATHTKPKVRRAGQQAVSAV 263
[Close]
BLAST of RRP12 isoform X2 vs. Ensembl Yeast
Match: RRP12 (Protein required for export of the ribosomal subunits; associates with the RNA components of the pre-ribosomes; has a role in nuclear import in association with Pse1p; also plays a role in the cell cycle and the DNA damage response; contains HEAT-repeats [Source:SGD;Acc:S000005933])

HSP 1 Score: 51.9878 bits (123), Expect = 8.007e-7
Identity = 82/336 (24.40%), Postives = 138/336 (41.07%), Query Frame = 3 
Query: 1605 LTEEEKM-FKASAEHFLGNLIKFLGFDRVDSVVPLTEIFDPSSSMMDSLSTRTWIVPLIKSYTERTSLDRFRQLILPCIQLITKKIDSLSAPQNTMEIDNANVSPNSIAVFSLGTLRYQLWSCLPSFANQVVPGGIQQ-VSDNLIEPNQYPIYFPPGIDCPKVTLWQLILDLLNPAESSNLESIALTAIRNL-------VQTAQDKTEMKQVLTSNVLFPQIVSKLFSIYMKKDYGIQMKIKSTLSCYLQLFEPE----TFNQNCEYLI------SKRLADIDTKQPSETHLSCIELLIIIGPHLSVPTIGRVTEYLSKFLSDNSVSNLIQKRVYR 2555
            + EE+ M  +   E  +G  I  +G + + +  PL  + +PSS        R W++PLI+ YT+  +L  F+  + P I+    K D               V   SI +    T+  Q+WS LP F    +P  +++  +D         +Y        +V L   I   L     SN+     ++  N+       +  AQ   E     ++N+L     + LF++Y +     +  I  T+  YL++   E    TFN  C  L       S    + + K+P  T  + ++L+I +  +L V +   +    S  L+ NS   LIQKR YR
Sbjct:  464 VNEEQFMDLRNEIELVIGASISAMGPEMILAEAPLN-LDNPSSER----PGRAWLLPLIRDYTKNANLATFQNELAPYIKSFQSKFD--------------KVPEESIQLRVFQTIVDQIWSTLPRFCE--LPMDLRESFTDEFASELSSLLY-------SEVELRTTICHALKVLAESNVSYAEESSSHNVLLLQRFPISEAQKNIEYLSTKSTNLL-----AVLFNVYTQTTPNARSYILETIDQYLKITSKEDLEKTFNNVCGLLKNSMNEESSGNVNKEKKKPQLT-ATLLDLIICMITYLPVSSYSALFSMFS--LTVNSADALIQKRAYR 763
[Close]
BLAST of RRP12 isoform X2 vs. Ensembl Nematostella
Match: EDO48743 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RIM7])

HSP 1 Score: 67.3958 bits (163), Expect = 3.518e-11
Identity = 46/149 (30.87%), Postives = 80/149 (53.69%), Query Frame = 3 
Query:  174 GNTKL--QRHVCEVVLYLKKKILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIIL-SLFSLPFNKHDNIVTIGLFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKAARKCV 611
             NT+L  Q+ VC V+  + + I  +GG+E   EYF+AL+  + S Q D+  M    Y+L  L+ + +P ++L+ + S  S++IL SL +   +   +++   L C+ +L+ +Q    W       +Y  L SFT  S+  V K+A + V
Sbjct:   99 ANTQLASQKEVCAVLAAVTEVIKSQGGSETETEYFAALMTALESAQ-DQESMTAIAYLL-TLIIKRVPESILKTKFSKASQVILSSLAAYAGDGGSSLLKSLLGCLCQLLVIQERAVWSESSTVKIYHGLLSFTIHSKPKVRKSAHEAV 245

HSP 2 Score: 55.0694 bits (131), Expect = 2.198e-7
Identity = 122/593 (20.57%), Postives = 242/593 (40.81%), Query Frame = 3 
Query: 1650 LGNLIKFLGFDRVDSVVPLTEIFDPSSSMMDSLSTRTWIVPLIKSYTERTSLDRFRQLILPCIQLITKKIDSLSAPQNTMEIDNANVSPNSIAVFSLGTLRYQLWSCLPSFANQVVPGGIQQVSDNLIEPNQYPIYFPPGIDCPKVTLWQLILDLLNPA--ESSNLESIALTAIRNLVQTAQDKTEMKQVLTSNVLFPQIVSKLFSIYMKKDYGIQMKIKSTLSCYLQLFEPETFNQNCEYLISKRLADIDTKQP-SETHLSCI-ELLIIIGPHLSVPTIGRVTEYLSKFLSDNSVSNLIQKRVYRYFDIISASNTVTSNEYTKQNINNIIETFKACEYVKADSWKC-RMKVLHNLFKLMNTAQEISGLLNRFLLEIIHCLNVRNNKARAISGLVLV---EAILSRYEETDEETMNSVSSSIDRMLNLLISDLRNKIHDNSKDGI-------QCKGALSKALYLILSEDRLA--RSVTREHITETMSLIQEIFTELGNTNSDRNLAFCAFDILGGLLKKKTYNFDNIHLVDVGQSLTAASHEMRIKHRISVKKILKKMLKLWDYEKIKKVIPEELIAVLRNIHKAMNRSKRSK 3377
            +G  I+ +G   V + VPL           D    R+W++P++K   + T L  F   +LP    +  K  + +     +E            VF   TL+ Q+WS LP F  +  P  + Q                          ++ +  +L  A  E S+L  I   A+R LV  ++   E K++      +  I+  L+S   K     ++ +  T+  YL + +P+  ++      +K +  +++K+  S    +C+ +L+I + P+++   +  +   +   L    V+   QK+ YR  + + +S++     +   +++ + +         + + K  R++ L ++ K +    E    +   + E+I C      KARA +  +LV    A+      T  E + +        L L+++ L    H  S   I       + +G +   +   L E  L   +S T+E I   +  ++ + + +    S  +LA  A D+  G++   T+N DN                 R + R +VK + +++++ + Y+   K +PE+   ++ NIHK   R KR K
Sbjct:  517 VGMAIQKMGPKNVLTAVPL----GLGKETDDCNFPRSWLLPILKDNIKDTQLKYFFDEMLPLAADLRAKAVTFTQAGKDLESK----------VFD--TLQLQIWSLLPGFCTR--PTDVVQS-------------------------FKSVARILGVALTERSDLRLIVCQALRILVSKSEKAEEKKELAAYAKNYLPILFNLYSADPKNGDPDKLPVLETVRTYLTITDPKLTSR----FFTKAIEKVNSKETISWNSRNCMMDLVIAMVPYVNESNLQTLYNMVVPSLKSQDVTQ--QKKAYRVLEQMCSSDSQACRAFLSSHLDQLQDKLLNSLASSSSASKAPRLRCLTHIVKHLGA--EHKDFITAIIPEVILCTKEVGTKARAAALSLLVANCHALCRCVPGTRAEGLVA-------YLELVLAGLAGSPHMVSATIISISRLVFEFRGDIPSKVMEQLIESVLVCLKSKTKEVIKSALGFLKVVISVM----SREDLAPYARDLASGIV---TWNEDN-----------------RRRFRYNVKVLFERLIRKFGYQTALKCVPEDHQKLVHNIHKTTQRLKRQK 1027
[Close]
BLAST of RRP12 isoform X2 vs. Ensembl Medaka
Match: rrp12 (ribosomal RNA processing 12 homolog [Source:NCBI gene;Acc:101167475])

HSP 1 Score: 58.5362 bits (140), Expect = 5.378e-8
Identity = 47/185 (25.41%), Postives = 85/185 (45.95%), Query Frame = 3 
Query:   87 DNESVNTFASWVDTLTTCESI--ENALKKCNGNTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSAL---INLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLFS-LPFNKHDNIVTIGLFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKAARKCVLSVF 623
            D  S  T  +++  L+ C ++      +    N+   + +C V+  + + I  +GG E   EYF+AL   + ++ SP+      +  V  L NL+ + +P  VL  + SD +K ++ + S    +   + +   L C++ L+  Q    W        Y  L SFT  S+  + KAA++ V SV 
Sbjct:   84 DEMSQRTSGTFLSGLSDCSNLTFRKVQRFWESNSAAHKEICAVLAAVTEVIRGQGGKETETEYFAALMTTLEVVDSPE-----SQTAVAYLLNLVMKRVPAPVLMSKFSDTTKALMDIMSKQASSDSSSALRWILSCLATLLRKQDLSVWTYPSTLQAYHGLLSFTVHSKPKIRKAAQQGVCSVL 263
[Close]
BLAST of RRP12 isoform X2 vs. Ensembl Medaka
Match: rrp12 (ribosomal RNA processing 12 homolog [Source:NCBI gene;Acc:101167475])

HSP 1 Score: 58.5362 bits (140), Expect = 6.242e-8
Identity = 47/185 (25.41%), Postives = 85/185 (45.95%), Query Frame = 3 
Query:   87 DNESVNTFASWVDTLTTCESI--ENALKKCNGNTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSAL---INLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLFS-LPFNKHDNIVTIGLFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKAARKCVLSVF 623
            D  S  T  +++  L+ C ++      +    N+   + +C V+  + + I  +GG E   EYF+AL   + ++ SP+      +  V  L NL+ + +P  VL  + SD +K ++ + S    +   + +   L C++ L+  Q    W        Y  L SFT  S+  + KAA++ V SV 
Sbjct:   84 DEMSQRTSGTFLSGLSDCSNLTFRKVQRFWESNSAAHKEICAVLAAVTEVIRGQGGKETETEYFAALMTTLEVVDSPE-----SQTAVAYLLNLVMKRVPAPVLMSKFSDTTKALMDIMSKQASSDSSSALRWILSCLATLLRKQDLSVWTYPSTLQAYHGLLSFTVHSKPKIRKAAQQGVCSVL 263
[Close]
BLAST of RRP12 isoform X2 vs. Planmine SMEST
Match: SMESG000033633.1 (SMESG000033633.1)

HSP 1 Score: 2669.03 bits (6917), Expect = 0.000e+0
Identity = 1344/1346 (99.85%), Postives = 1346/1346 (100.00%), Query Frame = 3 
Query:   81 MSDNESVNTFASWVDTLTTCESIENALKKCNGNTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLFSLPFNKHDNIVTIGLFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKAARKCVLSVFYAKSRTVGLLSKKHPLNRETINILTNSVRTQNAVNKKSEYKDIKVKPSPDDDRLSFSLSMIAGILKSKLFNGECVVXXXXXXXXXXXXXQIVPIQLQILDILSELFLKRVLFPEQTARVLTSLFSYLNLCSAKSNNKNSSTPIPSFFVGGNWLKTVVTGFESLLLNDEPTFTDSESNSLMNCRIIALTHGTNLVKFCSDWLLCDNDEFKSVSMSVLQKLCSGSLTTSESTIDLYLDPDQFPDADNWLSKWADIIARLLLVQSVSLWTILLDNLTRLLARSKGSCDRLTKVLMQCVPKICELRDSFEDTEAEAVASLTADRLRKVKSTLTEEEKMFKASAEHFLGNLIKFLGFDRVDSVVPLTEIFDPSSSMMDSLSTRTWIVPLIKSYTERTSLDRFRQLILPCIQLITKKIDSLSAPQNTMEIDNANVSPNSIAVFSLGTLRYQLWSCLPSFANQVVPGGIQQVSDNLIEPNQYPIYFPPGIDCPKVTLWQLILDLLNPAESSNLESIALTAIRNLVQTAQDKTEMKQVLTSNVLFPQIVSKLFSIYMKKDYGIQMKIKSTLSCYLQLFEPETFNQNCEYLISKRLADIDTKQPSETHLSCIELLIIIGPHLSVPTIGRVTEYLSKFLSDNSVSNLIQKRVYRYFDIISASNTVTSNEYTKQNINNIIETFKACEYVKADSWKCRMKVLHNLFKLMNTAQEISGLLNRFLLEIIHCLNVRNNKARAISGLVLVEAILSRYEETDEETMNSVSSSIDRMLNLLISDLRNKIHDNSKDGIQCKGALSKALYLILSEDRLARSVTREHITETMSLIQEIFTELGNTNSDRNLAFCAFDILGGLLKKKTYNFDNIHLVDVGQSLTAASHEMRIKHRISVKKILKKMLKLWDYEKIKKVIPEELIAVLRNIHKAMNRSKRSKNEPKDNESFATSWAGMSDVASQKTMKGPHIKNIAXXXXXXXXXXXXXKTRMTATTVGNKSVKSNKSTANELRKARKRKIDEANSKLQLVENTDDIVDLSDQVKLVQNLRITDKPGASRGDKIETEKPLVDKRGFHFQDGRLIIGQGRPEEPSIQAEADSGEEDNXXXXXXXXXXXXXVRKEKLPGSEYRSNKKGAFGDKMGKDKVQPFAYLPLKSTDQCHSVMSRYEKEIKKAQSDARKMSKARKRG 4118
            MSDNESVNTFASWVDTLTTCESIENALKKCNGNTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLFSLPFNKHDNIVTIGLFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKAARKCVLSVFYAKSRTVGLLSKKHPLNRETINILTNSVRTQNAVNKKSEYKDIKVKPSPDDDRLSFSLSMIAGILKSKLFNGECVVLYLEKL+QCLLSLQIVPIQLQILDILSELFLKRVLFPEQTARVLTSLFSYLNLCSAKSNNKNSSTPIPSFF+GGNWLKTVVTGFESLLLNDEPTFTDSESNSLMNCRIIALTHGTNLVKFCSDWLLCDNDEFKSVSMSVLQKLCSGSLTTSESTIDLYLDPDQFPDADNWLSKWADIIARLLLVQSVSLWTILLDNLTRLLARSKGSCDRLTKVLMQCVPKICELRDSFEDTEAEAVASLTADRLRKVKSTLTEEEKMFKASAEHFLGNLIKFLGFDRVDSVVPLTEIFDPSSSMMDSLSTRTWIVPLIKSYTERTSLDRFRQLILPCIQLITKKIDSLSAPQNTMEIDNANVSPNSIAVFSLGTLRYQLWSCLPSFANQVVPGGIQQVSDNLIEPNQYPIYFPPGIDCPKVTLWQLILDLLNPAESSNLESIALTAIRNLVQTAQDKTEMKQVLTSNVLFPQIVSKLFSIYMKKDYGIQMKIKSTLSCYLQLFEPETFNQNCEYLISKRLADIDTKQPSETHLSCIELLIIIGPHLSVPTIGRVTEYLSKFLSDNSVSNLIQKRVYRYFDIISASNTVTSNEYTKQNINNIIETFKACEYVKADSWKCRMKVLHNLFKLMNTAQEISGLLNRFLLEIIHCLNVRNNKARAISGLVLVEAILSRYEETDEETMNSVSSSIDRMLNLLISDLRNKIHDNSKDGIQCKGALSKALYLILSEDRLARSVTREHITETMSLIQEIFTELGNTNSDRNLAFCAFDILGGLLKKKTYNFDNIHLVDVGQSLTAASHEMRIKHRISVKKILKKMLKLWDYEKIKKVIPEELIAVLRNIHKAMNRSKRSKNEPKDNESFATSWAGMSDVASQKTMKGPHIKNIAELLNDSDSEDEDLKTRMTATTVGNKSVKSNKSTANELRKARKRKIDEANSKLQLVENTDDIVDLSDQVKLVQNLRITDKPGASRGDKIETEKPLVDKRGFHFQDGRLIIGQGRPEEPSIQAEADSGEEDNQSKKDKSQPAKKKVRKEKLPGSEYRSNKKGAFGDKMGKDKVQPFAYLPLKSTDQCHSVMSRYEKEIKKAQSDARKMSKARKRG
Sbjct:    1 MSDNESVNTFASWVDTLTTCESIENALKKCNGNTKLQRHVCEVVLYLKKKILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAVLRKETSDLSKIILSLFSLPFNKHDNIVTIGLFCMSKLISVQPDESWELQIVTHLYRTLFSFTNDSRASVNKAARKCVLSVFYAKSRTVGLLSKKHPLNRETINILTNSVRTQNAVNKKSEYKDIKVKPSPDDDRLSFSLSMIAGILKSKLFNGECVVLYLEKLIQCLLSLQIVPIQLQILDILSELFLKRVLFPEQTARVLTSLFSYLNLCSAKSNNKNSSTPIPSFFIGGNWLKTVVTGFESLLLNDEPTFTDSESNSLMNCRIIALTHGTNLVKFCSDWLLCDNDEFKSVSMSVLQKLCSGSLTTSESTIDLYLDPDQFPDADNWLSKWADIIARLLLVQSVSLWTILLDNLTRLLARSKGSCDRLTKVLMQCVPKICELRDSFEDTEAEAVASLTADRLRKVKSTLTEEEKMFKASAEHFLGNLIKFLGFDRVDSVVPLTEIFDPSSSMMDSLSTRTWIVPLIKSYTERTSLDRFRQLILPCIQLITKKIDSLSAPQNTMEIDNANVSPNSIAVFSLGTLRYQLWSCLPSFANQVVPGGIQQVSDNLIEPNQYPIYFPPGIDCPKVTLWQLILDLLNPAESSNLESIALTAIRNLVQTAQDKTEMKQVLTSNVLFPQIVSKLFSIYMKKDYGIQMKIKSTLSCYLQLFEPETFNQNCEYLISKRLADIDTKQPSETHLSCIELLIIIGPHLSVPTIGRVTEYLSKFLSDNSVSNLIQKRVYRYFDIISASNTVTSNEYTKQNINNIIETFKACEYVKADSWKCRMKVLHNLFKLMNTAQEISGLLNRFLLEIIHCLNVRNNKARAISGLVLVEAILSRYEETDEETMNSVSSSIDRMLNLLISDLRNKIHDNSKDGIQCKGALSKALYLILSEDRLARSVTREHITETMSLIQEIFTELGNTNSDRNLAFCAFDILGGLLKKKTYNFDNIHLVDVGQSLTAASHEMRIKHRISVKKILKKMLKLWDYEKIKKVIPEELIAVLRNIHKAMNRSKRSKNEPKDNESFATSWAGMSDVASQKTMKGPHIKNIAELLNDSDSEDEDLKTRMTATTVGNKSVKSNKSTANELRKARKRKIDEANSKLQLVENTDDIVDLSDQVKLVQNLRITDKPGASRGDKIETEKPLVDKRGFHFQDGRLIIGQGRPEEPSIQAEADSGEEDNQSKKDKSQPAKKKVRKEKLPGSEYRSNKKGAFGDKMGKDKVQPFAYLPLKSTDQCHSVMSRYEKEIKKAQSDARKMSKARKRG 1346
The following BLAST results are available for this feature:
BLAST of RRP12 isoform X2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 2
Match NameE-valueIdentityDescription
RRP127.468e-1027.27ribosomal RNA processing 12 homolog [Source:HGNC S... [more]
RRP127.468e-1027.27ribosomal RNA processing 12 homolog [Source:HGNC S... [more]
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BLAST of RRP12 isoform X2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RRP12 isoform X2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RRP12 isoform X2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rrp121.094e-926.32ribosomal RNA processing 12 homolog [Source:ZFIN;A... [more]
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BLAST of RRP12 isoform X2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
lgals1.32.167e-1220.71lectin, galactoside-binding, soluble, 1, gene 3 [S... [more]
lgals1.33.244e-1220.71lectin, galactoside-binding, soluble, 1, gene 3 [S... [more]
lgals1.36.277e-1219.80lectin, galactoside-binding, soluble, 1, gene 3 [S... [more]
lgals1.37.671e-1218.61lectin, galactoside-binding, soluble, 1, gene 3 [S... [more]
lgals1.31.214e-1119.77lectin, galactoside-binding, soluble, 1, gene 3 [S... [more]
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BLAST of RRP12 isoform X2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Rrp122.686e-1219.82ribosomal RNA processing 12 homolog (S. cerevisiae... [more]
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BLAST of RRP12 isoform X2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 3
Match NameE-valueIdentityDescription
sp|Q6P5B0|RRP12_MOUSE1.879e-1119.82RRP12-like protein OS=Mus musculus OX=10090 GN=Rrp... [more]
sp|Q5JTH9|RRP12_HUMAN3.587e-927.27RRP12-like protein OS=Homo sapiens OX=9606 GN=RRP1... [more]
sp|Q5ZKD5|RRP12_CHICK3.083e-726.83RRP12-like protein OS=Gallus gallus OX=9031 GN=RRP... [more]
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BLAST of RRP12 isoform X2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2H1C0991.264e-1626.61Uncharacterized protein OS=Fasciola hepatica OX=61... [more]
A0A5K3FL931.438e-1529.90Uncharacterized protein OS=Mesocestoides corti OX=... [more]
G7YL664.119e-1525.97Ribosomal RNA-processing protein 12 OS=Clonorchis ... [more]
A0A074ZY298.541e-1526.65NUC173 domain-containing protein OS=Opisthorchis v... [more]
A0A4S2MEI21.570e-1426.89NUC173 domain-containing protein OS=Opisthorchis f... [more]
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BLAST of RRP12 isoform X2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rrp121.205e-925.84ribosomal RNA processing 12 homolog [Source:NCBI g... [more]
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BLAST of RRP12 isoform X2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rrp121.335e-1024.18ribosomal RNA processing 12 homolog [Source:ZFIN;A... [more]
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BLAST of RRP12 isoform X2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
RRP128.007e-724.40Protein required for export of the ribosomal subun... [more]
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BLAST of RRP12 isoform X2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO487433.518e-1130.87Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of RRP12 isoform X2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rrp125.378e-825.41ribosomal RNA processing 12 homolog [Source:NCBI g... [more]
rrp126.242e-825.41ribosomal RNA processing 12 homolog [Source:NCBI g... [more]
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BLAST of RRP12 isoform X2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000033633.10.000e+099.85SMESG000033633.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30026629 ID=SMED30026629|Name=RRP12 isoform X2|organism=Schmidtea mediterranea sexual|type=transcript|length=4122bp
CTTGTTTTCAACCATTAAATTTTGTTTAAATAATTAGTATTTAAGTCACA
TTTTTATACGTTACTAAAGTATTTTATGATATGAGTGATAACGAATCAGT
TAATACATTTGCGTCATGGGTTGACACACTAACAACTTGCGAATCAATAG
AAAATGCCTTAAAAAAATGTAATGGAAATACAAAATTGCAAAGACATGTT
TGCGAAGTTGTTCTTTATTTGAAAAAAAAAATTTTAGAGAAAGGAGGCAC
AGAAAGAAGTATCGAGTATTTTAGTGCTTTGATTAATTTAATTCTATCAC
CACAATTCGATAAAAATTTAATGGAGCCATGTGTTTATATTCTCAAAAAT
CTGATGCAACAAGATATACCAATAGCCGTTCTCCGAAAAGAGACAAGCGA
TTTGTCAAAAATTATATTGAGTTTATTTTCTCTTCCGTTTAATAAACATG
ATAACATTGTGACAATTGGACTGTTTTGCATGAGTAAATTAATTTCAGTT
CAACCAGACGAAAGCTGGGAATTACAAATTGTTACCCACTTGTATAGAAC
TCTATTTTCTTTCACTAACGATTCTCGAGCCAGTGTCAATAAAGCTGCTA
GAAAATGTGTTTTATCGGTATTTTATGCCAAATCTCGAACTGTCGGGTTG
TTATCTAAAAAGCATCCGCTAAACAGAGAAACTATCAATATTTTGACAAA
TTCTGTCAGAACTCAAAATGCTGTCAACAAGAAAAGTGAATATAAAGATA
TAAAAGTTAAACCGTCACCGGATGACGATAGGCTATCATTTTCTCTTTCA
ATGATTGCTGGAATATTGAAATCTAAATTGTTCAATGGCGAATGTGTCGT
TTTGTATTTAGAGAAATTGTTACAATGTCTTCTTTCATTACAGATAGTTC
CGATCCAGCTACAGATATTGGATATCCTTTCGGAATTATTCTTGAAAAGA
GTTTTATTCCCCGAACAAACCGCTCGCGTTCTCACATCGTTATTCAGTTA
TCTGAATCTCTGCTCTGCCAAATCGAATAACAAGAATTCCTCCACTCCGA
TTCCATCGTTCTTTGTCGGAGGAAACTGGCTGAAAACTGTCGTAACCGGG
TTTGAGTCACTGCTGTTGAACGATGAGCCGACATTTACGGATTCCGAATC
GAACTCCCTCATGAATTGCCGGATAATCGCTTTGACACACGGCACGAACC
TGGTGAAATTCTGTTCCGATTGGTTGCTATGCGACAACGATGAGTTCAAA
TCCGTGTCGATGTCAGTGCTGCAAAAGTTGTGCTCGGGTTCTCTGACAAC
CAGCGAATCGACAATCGATCTCTATCTGGATCCGGATCAATTCCCGGATG
CCGATAATTGGCTGAGCAAATGGGCAGATATTATCGCCCGGTTGCTATTG
GTGCAGAGTGTGAGTTTGTGGACGATCCTGCTCGATAATTTGACCCGGCT
CCTCGCTCGATCGAAGGGCTCCTGTGATAGGCTGACAAAAGTCCTGATGC
AATGCGTCCCGAAGATTTGCGAGCTGAGGGATTCGTTTGAAGACACCGAA
GCCGAAGCTGTCGCTTCCTTGACAGCAGATCGGCTGAGAAAGGTCAAATC
GACTTTGACCGAAGAAGAGAAAATGTTTAAAGCTTCCGCGGAGCATTTTC
TAGGAAACCTAATAAAATTCCTCGGATTCGACAGAGTGGATTCAGTTGTT
CCTTTGACAGAGATATTCGATCCGTCGAGTTCAATGATGGATTCGCTGTC
GACTCGGACATGGATTGTTCCCCTGATCAAGTCATACACAGAACGCACCT
CATTGGACCGATTCCGCCAACTGATCCTGCCCTGCATCCAATTAATCACG
AAAAAGATCGATAGTTTATCCGCGCCTCAAAACACCATGGAGATCGATAA
CGCGAATGTTTCACCGAATTCCATTGCGGTTTTCAGCTTAGGCACGTTGC
GATATCAGCTGTGGTCGTGCTTGCCGTCATTTGCCAATCAGGTCGTCCCC
GGAGGCATTCAGCAGGTTTCCGACAACCTCATCGAACCAAATCAATACCC
GATCTATTTCCCACCGGGAATCGATTGCCCCAAAGTCACCCTGTGGCAGC
TGATACTCGACCTGCTGAACCCGGCCGAATCCAGCAACCTGGAATCAATC
GCACTGACTGCCATCAGGAATCTCGTCCAGACCGCCCAGGACAAAACGGA
AATGAAACAAGTCCTCACATCGAATGTCCTGTTCCCACAGATCGTCTCGA
AACTATTCAGCATTTACATGAAAAAGGATTACGGAATCCAAATGAAAATC
AAATCGACTTTGTCCTGTTATTTGCAGCTGTTTGAACCGGAAACCTTCAA
TCAGAACTGTGAATATCTGATTTCCAAACGATTGGCCGATATCGACACCA
AACAACCGTCGGAAACCCATCTGAGCTGCATTGAGTTATTGATTATTATC
GGTCCCCATTTGTCGGTGCCAACAATCGGCCGTGTCACGGAATATCTCTC
CAAGTTTCTCAGCGACAACTCCGTCAGTAATCTCATACAAAAACGGGTTT
ATCGATATTTCGATATCATTTCCGCGTCGAACACCGTCACTAGCAACGAG
TACACAAAACAGAATATCAACAATATCATCGAGACATTCAAAGCCTGCGA
ATACGTGAAAGCCGATTCCTGGAAATGTCGAATGAAAGTTTTGCATAACC
TTTTCAAACTCATGAATACCGCTCAGGAGATCTCGGGATTACTGAACCGG
TTCCTATTGGAGATTATTCACTGTCTCAATGTTCGCAATAACAAGGCGAG
AGCGATATCGGGATTGGTGTTGGTGGAGGCGATTTTATCCCGCTACGAGG
AAACCGATGAAGAAACAATGAATTCCGTGTCGAGTTCAATTGATCGAATG
CTAAATCTATTGATTTCCGATTTGAGGAACAAAATCCATGACAACTCTAA
GGATGGAATCCAATGCAAAGGCGCCTTGTCTAAGGCTCTTTATTTGATTT
TAAGTGAAGATAGATTAGCCCGTTCAGTAACACGGGAACACATTACCGAA
ACGATGTCGCTGATCCAGGAAATCTTCACTGAACTCGGCAACACAAATAG
TGATCGAAATTTGGCATTCTGTGCTTTCGATATTCTCGGTGGGCTGTTGA
AGAAAAAGACCTATAATTTCGACAATATCCATCTGGTGGATGTCGGGCAG
AGTTTGACTGCTGCCAGCCACGAGATGAGAATCAAACATCGGATCTCGGT
GAAAAAGATTTTGAAGAAAATGTTGAAGTTGTGGGATTATGAAAAAATCA
AGAAAGTTATTCCAGAGGAGCTGATTGCAGTGTTGAGGAATATTCATAAA
GCAATGAACCGATCTAAACGCAGTAAAAATGAACCGAAGGACAATGAATC
GTTTGCAACAAGTTGGGCTGGAATGAGTGACGTTGCCAGCCAGAAAACTA
TGAAAGGACCTCATATTAAGAATATCGCAGAATTGCTCAATGATTCTGAT
TCCGAGGATGAAGATCTAAAAACGAGAATGACCGCAACTACAGTTGGCAA
TAAATCAGTCAAGTCTAACAAATCAACAGCCAATGAATTGCGAAAGGCAA
GAAAACGAAAAATCGATGAAGCAAACTCGAAATTGCAATTGGTTGAAAAC
ACCGACGACATTGTTGATTTAAGCGACCAGGTGAAATTGGTTCAAAACCT
GCGAATCACTGACAAGCCTGGTGCTAGCAGAGGCGATAAAATCGAAACCG
AAAAGCCATTGGTCGATAAGAGAGGATTTCATTTCCAGGATGGTCGATTG
ATTATTGGACAAGGGAGACCGGAGGAGCCTTCGATACAAGCTGAGGCTGA
CTCCGGCGAGGAAGATAACCAATCAAAGAAGGATAAATCACAACCGGCGA
AGAAGAAAGTCAGAAAAGAAAAGTTGCCTGGAAGCGAATACAGATCGAAT
AAAAAGGGGGCATTCGGAGACAAAATGGGCAAAGACAAGGTGCAGCCATT
TGCTTATTTGCCGTTGAAATCCACCGATCAATGCCACAGCGTGATGAGCA
GGTACGAGAAGGAGATTAAGAAGGCCCAGAGTGATGCGAGAAAAATGTCA
AAAGCCAGGAAGCGCGGCTGAG
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protein sequence of SMED30026629-orf-1

>SMED30026629-orf-1 ID=SMED30026629-orf-1|Name=SMED30026629-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1347bp
MSDNESVNTFASWVDTLTTCESIENALKKCNGNTKLQRHVCEVVLYLKKK
ILEKGGTERSIEYFSALINLILSPQFDKNLMEPCVYILKNLMQQDIPIAV
LRKETSDLSKIILSLFSLPFNKHDNIVTIGLFCMSKLISVQPDESWELQI
VTHLYRTLFSFTNDSRASVNKAARKCVLSVFYAKSRTVGLLSKKHPLNRE
TINILTNSVRTQNAVNKKSEYKDIKVKPSPDDDRLSFSLSMIAGILKSKL
FNGECVVLYLEKLLQCLLSLQIVPIQLQILDILSELFLKRVLFPEQTARV
LTSLFSYLNLCSAKSNNKNSSTPIPSFFVGGNWLKTVVTGFESLLLNDEP
TFTDSESNSLMNCRIIALTHGTNLVKFCSDWLLCDNDEFKSVSMSVLQKL
CSGSLTTSESTIDLYLDPDQFPDADNWLSKWADIIARLLLVQSVSLWTIL
LDNLTRLLARSKGSCDRLTKVLMQCVPKICELRDSFEDTEAEAVASLTAD
RLRKVKSTLTEEEKMFKASAEHFLGNLIKFLGFDRVDSVVPLTEIFDPSS
SMMDSLSTRTWIVPLIKSYTERTSLDRFRQLILPCIQLITKKIDSLSAPQ
NTMEIDNANVSPNSIAVFSLGTLRYQLWSCLPSFANQVVPGGIQQVSDNL
IEPNQYPIYFPPGIDCPKVTLWQLILDLLNPAESSNLESIALTAIRNLVQ
TAQDKTEMKQVLTSNVLFPQIVSKLFSIYMKKDYGIQMKIKSTLSCYLQL
FEPETFNQNCEYLISKRLADIDTKQPSETHLSCIELLIIIGPHLSVPTIG
RVTEYLSKFLSDNSVSNLIQKRVYRYFDIISASNTVTSNEYTKQNINNII
ETFKACEYVKADSWKCRMKVLHNLFKLMNTAQEISGLLNRFLLEIIHCLN
VRNNKARAISGLVLVEAILSRYEETDEETMNSVSSSIDRMLNLLISDLRN
KIHDNSKDGIQCKGALSKALYLILSEDRLARSVTREHITETMSLIQEIFT
ELGNTNSDRNLAFCAFDILGGLLKKKTYNFDNIHLVDVGQSLTAASHEMR
IKHRISVKKILKKMLKLWDYEKIKKVIPEELIAVLRNIHKAMNRSKRSKN
EPKDNESFATSWAGMSDVASQKTMKGPHIKNIAELLNDSDSEDEDLKTRM
TATTVGNKSVKSNKSTANELRKARKRKIDEANSKLQLVENTDDIVDLSDQ
VKLVQNLRITDKPGASRGDKIETEKPLVDKRGFHFQDGRLIIGQGRPEEP
SIQAEADSGEEDNQSKKDKSQPAKKKVRKEKLPGSEYRSNKKGAFGDKMG
KDKVQPFAYLPLKSTDQCHSVMSRYEKEIKKAQSDARKMSKARKRG*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000101muscle cell
PLANA:0000429neoblast
PLANA:0002109X1 cell
PLANA:0002111X2 cell
PLANA:0003001lateral region of the whole animal
Vocabulary: INTERPRO
TermDefinition
IPR012978Uncharacterised_NUC173
IPR016024ARM-type_fold
Vocabulary: molecular function
TermDefinition
GO:0005488binding
GO:0003723RNA binding
GO:0005515protein binding
Vocabulary: biological process
TermDefinition
GO:0000462maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0042254ribosome biogenesis
Vocabulary: cellular component
TermDefinition
GO:0005634nucleus
GO:0005730nucleolus
GO:0005737cytoplasm
GO:0005840ribosome
GO:0030688preribosome, small subunit precursor
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1322..1342
NoneNo IPR availableCOILSCoilCoilcoord: 1171..1191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1093..1112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1259..1299
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1240..1299
NoneNo IPR availablePANTHERPTHR21576:SF2RRP12-LIKE PROTEINcoord: 19..1320
NoneNo IPR availablePANTHERPTHR21576UNCHARACTERIZED NODULIN-LIKE PROTEINcoord: 19..1320
IPR012978Uncharacterised domain NUC173PFAMPF08161NUC173coord: 433..637
e-value: 5.0E-14
score: 52.5
IPR016024Armadillo-type foldSUPERFAMILYSSF48371ARM repeatcoord: 33..1088