SMED30026550

Overview
NameSMED30026550
Smed IDSMED30026550
Length (bp)1899
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30026550 (SMED30026550) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30026550 (SMED30026550) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30026550 (SMED30026550) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30026550 (SMED30026550) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30026550

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30026550 SmedASXL_063598SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30026550 SmedASXL_063598SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30026550SMESG000078337.1 dd_Smed_v4_10246_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30026550SMESG000078337.1 dd_Smed_v4_10246_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30026550SMESG000078337.1 dd_Smed_v4_10246_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30026550SMESG000078337.1 dd_Smed_v4_10246_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30026550 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001089:77571..93194 -9340
Homology
[Close]
BLAST of SMED30026550 vs. TrEMBL
Match: A0A0K0EJP9 (HTH_48 domain-containing protein OS=Strongyloides stercoralis OX=6248 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 8.734e-11
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = -1 
Query:  874 AVTVCQEMNPTYGDVLKINKYQSWLRKFTCDDFDLSLGERKNRSSKLDAGLLSSLVKSDSRQSIKDLSDKLNSSL*TIYERLKKIVKVDRYEILLPQNLCENNKAQQRA 1200
            A T  + +   Y + L + K Q W  KF   DFDLS   R  R   +D  +L ++V+++  Q+IK+LS KLNS   TI E +K+I KV+R  + +  NL E NK  + +
Sbjct:   25 ATTATENICDAYPEALNVRKCQRWFVKFRSGDFDLSDASRSGRPITVDNDILQAIVEANPYQTIKELSVKLNSPWSTIQEHMKQIGKVNREGVWVSDNLSEENKVNRSS 133
[Close]
BLAST of SMED30026550 vs. TrEMBL
Match: A0A0K0E0J2 (HTH_48 domain-containing protein OS=Strongyloides stercoralis OX=6248 PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.122e-10
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = -1 
Query:  880 AVTVCQEMNPTYGDVLKINKYQSWLRKFTCDDFDLSLGERKNRSSKLDAGLLSSLVKSDSRQSIKDLSDKLNSSL*TIYERLKKIVKVDRYEILLPQNLCENNKAQQ 1200
            A T  + +   Y   L + K Q W  KF   DFDLS   R  R+S L+  +L   +++D  Q+I++LS+KLNS+  T+ + LK+I KV    + +P NL E NKA++
Sbjct:   17 ATTATKNICSVYPGFLDVRKCQRWFLKFKSGDFDLSDANRSGRTSALNNDIL---LEADLCQTIEELSNKLNSTCSTVQKHLKQIGKVYSEGVWVPHNLSEENKAKR 120
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BLAST of SMED30026550 vs. TrEMBL
Match: T2MC65 (Histone-lysine N-methyltransferase SETMAR (Fragment) OS=Hydra vulgaris OX=6087 GN=SETMAR PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.953e-9
Identity = 41/126 (32.54%), Postives = 61/126 (48.41%), Query Frame = -1 
Query:  856 AVTVCQEMNPTYGDVLKINKYQSWLRKFTCDDFDLSLGERKNRSSKLDAGLLSSLVKSDSRQSIKDLSDKLNSSL*TIYERLKKIVKVDRYEILLPQNLCENNKA-----------QQRAQIFLSR 1200
            A    + ++  Y   L + K Q W  KF   +FDLS   R  R   LD  +L + V+++  Q+I++LS+ LN    TI E L +I K+ R  + +P NL   NKA           +  A+ FL R
Sbjct:   24 ATVATKNISDVYPGSLDVRKCQRWFSKFRSGNFDLSDAHRPGRPMSLDNDVLRAEVEANPCQTIEELSNTLNQPWSTIQEHLHQIGKISRAGVWVPHNLSVQNKANRSTTCNALIQRHHAEPFLDR 149
[Close]
BLAST of SMED30026550 vs. TrEMBL
Match: F4WXF5 (Histone-lysine N-methyltransferase SETMAR OS=Acromyrmex echinatior OX=103372 GN=G5I_10640 PE=4 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 4.469e-8
Identity = 34/105 (32.38%), Postives = 58/105 (55.24%), Query Frame = -1 
Query:  889 AVTVCQEMNPTYGDVLKINK-YQSWLRKFTCDDFDLSLGERKNRSSKLDAGLLSSLVKSDSRQSIKDLSDKLNSSL*TIYERLKKIVKVDRYEILLPQNLCENNK 1200
            A    +++   YG+ L  ++  + W  KF   D  L  G R  R S LD  LL ++++ + RQS +D++ +LN+S  T+   L+K+ K+ +  + +P NL E NK
Sbjct:   22 AKGTAEKICSVYGEGLISDRTVRHWFAKFRSGDTTLKDGPRAGRPSDLDDKLLKAMLEQNPRQSTRDIAGRLNTSQSTVCRHLEKLGKISKLGVWVPHNLSERNK 126
[Close]
BLAST of SMED30026550 vs. TrEMBL
Match: A0A154PQM4 (Histone-lysine N-methyltransferase SETMAR OS=Dufourea novaeangliae OX=178035 GN=WN55_06632 PE=4 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 5.188e-8
Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = -1 
Query:  886 AVTVCQEMNPTYG-DVLKINKYQSWLRKFTCDDFDLSLGERKNRSSKLDAG-LLSSLVKSDSRQSIKDLSDKLNSSL*TIYERLKKIVKVDRYEILLPQNLCENNKA 1200
            A    +E+   YG D +     Q+W +KF   DF L   +R  R +++D   +L + V+++  Q+I+DLS+ LN    TI+E L++I KV R  + +P NL   NKA
Sbjct:   22 AAEAHKEICEVYGVDCITDRTCQNWFKKFRSGDFSLKDDQRSGRPTEVDDNDVLRAEVEANPCQTIEDLSNTLNQPWSTIHEHLQEIRKVSRAGVWVPHNLSGENKA 128
[Close]
BLAST of SMED30026550 vs. Planmine SMEST
Match: SMESG000078337.1 (SMESG000078337.1)

HSP 1 Score: 429.869 bits (1104), Expect = 2.854e-144
Identity = 210/216 (97.22%), Postives = 210/216 (97.22%), Query Frame = 3 
Query:   36 MSCFTEVFHALDHDNKGYILFDDFKNEMLKFLSTGEQSFLTKEKLDQKKTLEQFLNSLTQQNDKIFFTDFIEGIKKLTNSDSKITDNELDNESNCDYHQIFANNDSSPFINDGDNYSTGDSGLDNESGINRENVCNGIGKQNRKRIKAFQNADLSQSIETLKRRFSENESLNNTDYDGQIYKTNQTYHNIPHISLKSSYNCERRKRNYASRLVCVC 683
            MS FTEVFHALDHDNKGYILFDDFKNEMLKFLSTGEQSFLTKEKLDQKKTLEQFLNSLTQQNDKIFFTDFIEGIKKLTNSDSKITDNELDNESNCDYHQIFANNDSSPFINDGDNYSTGDSGLDNESGINRENVCNGIGKQNRKRIKAFQNADLSQSIETLKRRFSENESLNNTDYDGQIYKTNQTYHNIPHISLKSSYNCERRKRNYAS     C
Sbjct:    1 MSYFTEVFHALDHDNKGYILFDDFKNEMLKFLSTGEQSFLTKEKLDQKKTLEQFLNSLTQQNDKIFFTDFIEGIKKLTNSDSKITDNELDNESNCDYHQIFANNDSSPFINDGDNYSTGDSGLDNESGINRENVCNGIGKQNRKRIKAFQNADLSQSIETLKRRFSENESLNNTDYDGQIYKTNQTYHNIPHISLKSSYNCERRKRNYASSDFVTC 216
[Close]
BLAST of SMED30026550 vs. Planmine SMEST
Match: SMESG000078337.1 (SMESG000078337.1)

HSP 1 Score: 412.535 bits (1059), Expect = 2.646e-142
Identity = 204/205 (99.51%), Postives = 204/205 (99.51%), Query Frame = 3 
Query:   36 MSCFTEVFHALDHDNKGYILFDDFKNEMLKFLSTGEQSFLTKEKLDQKKTLEQFLNSLTQQNDKIFFTDFIEGIKKLTNSDSKITDNELDNESNCDYHQIFANNDSSPFINDGDNYSTGDSGLDNESGINRENVCNGIGKQNRKRIKAFQNADLSQSIETLKRRFSENESLNNTDYDGQIYKTNQTYHNIPHISLKSSYNCERRK 650
            MS FTEVFHALDHDNKGYILFDDFKNEMLKFLSTGEQSFLTKEKLDQKKTLEQFLNSLTQQNDKIFFTDFIEGIKKLTNSDSKITDNELDNESNCDYHQIFANNDSSPFINDGDNYSTGDSGLDNESGINRENVCNGIGKQNRKRIKAFQNADLSQSIETLKRRFSENESLNNTDYDGQIYKTNQTYHNIPHISLKSSYNCERRK
Sbjct:    1 MSYFTEVFHALDHDNKGYILFDDFKNEMLKFLSTGEQSFLTKEKLDQKKTLEQFLNSLTQQNDKIFFTDFIEGIKKLTNSDSKITDNELDNESNCDYHQIFANNDSSPFINDGDNYSTGDSGLDNESGINRENVCNGIGKQNRKRIKAFQNADLSQSIETLKRRFSENESLNNTDYDGQIYKTNQTYHNIPHISLKSSYNCERRK 205
[Close]
BLAST of SMED30026550 vs. Planmine SMEST
Match: SMESG000078337.1 (SMESG000078337.1)

HSP 1 Score: 419.853 bits (1078), Expect = 2.081e-140
Identity = 204/210 (97.14%), Postives = 207/210 (98.57%), Query Frame = 3 
Query:   36 MSCFTEVFHALDHDNKGYILFDDFKNEMLKFLSTGEQSFLTKEKLDQKKTLEQFLNSLTQQNDKIFFTDFIEGIKKLTNSDSKITDNELDNESNCDYHQIFANNDSSPFINDGDNYSTGDSGLDNESGINRENVCNGIGKQNRKRIKAFQNADLSQSIETLKRRFSENESLNNTDYDGQIYKTNQTYHNIPHISLKSSYNCERRKRNYAS 665
            MS FTEVFHALDHDNKGYILFDDFKNEMLKFLSTGEQSFLTKEKLDQKKTLEQFLNSLTQQNDKIFFTDFIEGIKKLTNSDSKITDNELDNESNCDYHQIFANNDSSPFINDGDNYSTGDSGLDNESGINRENVCNGIGKQNRKRIKAFQNADLSQSIETLKRRFSENESLNNTDYDGQIYKTNQTYHNIPHISLKSSYNCERRK ++ +
Sbjct:    1 MSYFTEVFHALDHDNKGYILFDDFKNEMLKFLSTGEQSFLTKEKLDQKKTLEQFLNSLTQQNDKIFFTDFIEGIKKLTNSDSKITDNELDNESNCDYHQIFANNDSSPFINDGDNYSTGDSGLDNESGINRENVCNGIGKQNRKRIKAFQNADLSQSIETLKRRFSENESLNNTDYDGQIYKTNQTYHNIPHISLKSSYNCERRKSDFVT 210
The following BLAST results are available for this feature:
BLAST of SMED30026550 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026550 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026550 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026550 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026550 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026550 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026550 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026550 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K0EJP98.734e-1137.61HTH_48 domain-containing protein OS=Strongyloides ... [more]
A0A0K0E0J23.122e-1038.32HTH_48 domain-containing protein OS=Strongyloides ... [more]
T2MC658.953e-932.54Histone-lysine N-methyltransferase SETMAR (Fragmen... [more]
F4WXF54.469e-832.38Histone-lysine N-methyltransferase SETMAR OS=Acrom... [more]
A0A154PQM45.188e-835.51Histone-lysine N-methyltransferase SETMAR OS=Dufou... [more]
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BLAST of SMED30026550 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026550 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026550 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026550 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026550 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026550 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000078337.12.854e-14497.22SMESG000078337.1[more]
SMESG000078337.12.646e-14299.51SMESG000078337.1[more]
SMESG000078337.12.081e-14097.14SMESG000078337.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30026550 ID=SMED30026550|Name=SMED30026550|organism=Schmidtea mediterranea sexual|type=transcript|length=1899bp
AAATTTCAATTAAATAGAATTATTGAATTGAAAATATGTCTTGTTTCACT
GAAGTATTTCATGCTTTAGATCATGACAATAAGGGGTATATTCTTTTCGA
TGATTTTAAGAATGAAATGTTAAAATTTTTATCTACGGGCGAACAATCAT
TTTTGACAAAGGAGAAATTGGATCAAAAAAAAACTTTAGAGCAATTTCTA
AATTCTCTTACACAACAGAATGATAAGATATTTTTCACCGATTTCATTGA
AGGCATTAAAAAGCTGACAAATTCAGACTCTAAAATTACCGATAATGAAT
TAGATAATGAATCAAACTGTGATTATCATCAAATATTTGCCAACAATGAT
AGCAGCCCTTTTATAAATGATGGAGATAATTACTCTACTGGTGATAGTGG
TTTAGATAATGAATCAGGAATCAACAGAGAAAATGTATGTAATGGAATTG
GCAAGCAAAATCGGAAACGAATTAAAGCTTTTCAAAATGCAGACCTGTCA
CAAAGTATTGAAACATTAAAAAGAAGATTTTCTGAAAACGAATCTTTAAA
CAATACAGATTATGATGGTCAAATTTACAAGACAAATCAAACATATCACA
ATATACCTCATATTAGTTTGAAAAGCAGCTACAATTGCGAAAGGCGAAAG
AGAAATTATGCTTCAAGGTTAGTATGTGTATGTAGTATTCTTGTCGATGT
GGGTATTGTTTGCTCTAAAGCTTTTCCCGAAATCTAATAATTAAAATATC
CATATATAAAGTGTTAAATTTCCTTGTAATTATCAGACCCGTAATTTTTT
TGATTTTAATTTCACCCAATAAATTTTTTAGTACTAATTTGAATTTTAAT
ATATTCCGACTCAAAAATATTTGTGCTCGTTGTTGTGCTTTGTTGTTTTC
GCAAAGATTTTGAGGAAGCAAAATCTCGTATCTATCCACTTTTACAATTT
TCTTTAAACGTTCGTAAATAGTTTACAATGATGAGTTGAGCTTATCCGAC
AAATCCTTTATGCTTTGACGTGAATCAGACTTAACCAAGGACGAAAGCAA
GCCAGCATCCAGCTTGGATGACCTATTTTTACGTTCACCAAGAGAAAGAT
CGAAATCATCACATGTAAACTTTCTCAACCAACTTTGGTATTTATTGATC
TTCAGTACATCACCATAAGTGGGATTCATCTCCTGGCAAACAGTAACTGC
TCATAATGCTTTAAATGATTTTCACCAACTTCCATGGTAGGCCCTACAAT
CCAGATTATTTCAAATTACAAATTTAAATTTGAAAATTTGAAAATAACTC
ATTACTTTCCGTTTTATTTTTTTGGTTCCATATTAAAATGCCAAAATTTC
CATGCTCTTTCAGTGTGCGAAGAGGGTACTAATAGTAAAGACATAGTAAA
TCTGACAAGTTTTCTAAATTTCGAATTTGTTCTATATAAATCGGTAAATC
CCAATGTTAGGCATTTCCTCCACACTGCTTGTGCAAAGTGAAAATAACAA
CCCTTTATTTCTACTCTAAAAAAACTCGTTTAATAGCGAAGCTTTTTCAA
AATCTATCAATACCATCGATGGATTGATAGACATCATTTCGATTTAACTC
CAACAAATTCAACTTTATCATTTGCATGTCGTGGCTAATAAAGGTGCTTT
TCAGAATATATTCTATTACTAAAATTTTCGTAAGAACCAATGTGTGTTCT
TACTACGCTTCTAATGTCAGTATCTTCAATAGAGCTGGACAATTCTCTGA
GACAAAATATTATAAACAGAATTAGCAGTTTTAAAAGGATTGCTAGCTAT
CAACTTAGGCATTTTAATAGGACACCTATTTTTTATAATCAAATAAATGT
TTTTAAAGTTGTTAAATAATAATAGATTACTTACAAATATTCCTAATGC
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protein sequence of SMED30026550-orf-1

>SMED30026550-orf-1 ID=SMED30026550-orf-1|Name=SMED30026550-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=234bp
MSCFTEVFHALDHDNKGYILFDDFKNEMLKFLSTGEQSFLTKEKLDQKKT
LEQFLNSLTQQNDKIFFTDFIEGIKKLTNSDSKITDNELDNESNCDYHQI
FANNDSSPFINDGDNYSTGDSGLDNESGINRENVCNGIGKQNRKRIKAFQ
NADLSQSIETLKRRFSENESLNNTDYDGQIYKTNQTYHNIPHISLKSSYN
CERRKRNYASRLVCVCSILVDVGIVCSKAFPEI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
Vocabulary: molecular function
TermDefinition
GO:0005509calcium ion binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 1..34
score: 9.409
IPR011992EF-hand domain pairSUPERFAMILYSSF47473EF-handcoord: 3..91