SMED30026394

Overview
NameSMED30026394
Smed IDSMED30026394
Length (bp)665
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30026394 (SMED30026394) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30026394 (SMED30026394) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30026394 (SMED30026394) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30026394 (SMED30026394) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30026394

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 21

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
tail regionSMED30026394SMESG000029612.1 SMESG000029602.1 SmedASXL_009684SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
Category 3 cellSMED30026394SMESG000029612.1 SMESG000029602.1 SmedASXL_009684SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		whole organism asexual adult fluorescence in situ hybridization evidence
parenchymaSMED30026394SMESG000029612.1 SMESG000029602.1 SmedASXL_009684SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		whole organism asexual adult colorimetric in situ hybridization evidence
Smed sexual biotypeSMED30026394SMESG000070393.1 SMESG000040193.1 SMESG000029612.1 SMESG000029602.1 SMESG000019334.1 Contig13195uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30026394SMESG000070393.1 SMESG000040193.1 SMESG000029612.1 SMESG000029602.1 SMESG000019334.1 Contig13195newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30026394SMESG000037212.1 SMESG000029612.1 SMESG000029602.1 SMESG000028539.1 Contig12392uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30026394SMESG000037212.1 SMESG000029612.1 SMESG000029602.1 SMESG000028539.1 Contig12392newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30026394SMESG000029602.1 SMESG000029612.1 Contig11353uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30026394SMESG000029602.1 SMESG000029612.1 Contig11353newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30026394SMESG000040193.1 SMESG000029612.1 SMESG000029602.1 Contig13216uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30026394SMESG000040193.1 SMESG000029612.1 SMESG000029602.1 Contig13216newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30026394SMESG000029612.1 SMESG000029602.1 Contig12391uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30026394SMESG000029612.1 SMESG000029602.1 Contig12391newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30026394SMESG000056221.1 SMESG000046858.1 SMESG000029613.1 SMESG000029612.1 SMESG000029602.1 SMESG000025472.1 SMESG000023703.1 SMESG000011090.1 Contig36311newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30026394SMESG000056221.1 SMESG000046858.1 SMESG000029613.1 SMESG000029612.1 SMESG000029602.1 SMESG000025472.1 SMESG000023703.1 SMESG000011090.1 Contig36311uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30026394SMESG000081747.1 SMESG000063286.1 SMESG000053779.1 SMESG000029612.1 SMESG000029602.1 SMESG000029600.1 SMESG000018997.1 SMESG000009617.1 SMESG000005074.1 Contig43035newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30026394SMESG000081747.1 SMESG000063286.1 SMESG000053779.1 SMESG000029612.1 SMESG000029602.1 SMESG000029600.1 SMESG000018997.1 SMESG000009617.1 SMESG000005074.1 Contig43035uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30026394SMESG000016663.1 Contig833GPL15192PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30026394SMESG000029612.1 SMESG000029602.1 Contig833GPL15192PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
gutSMED30026394SMESG000029612.1 SMESG000029602.1 SMED30026394smed_20140614PMID:26457503
Tu et al., 2015		whole organism asexual adult colorimetric in situ hybridization evidence
parenchymaSMED30026394SMESG000029612.1 SMESG000029602.1 SMED30026394smed_20140614PMID:26457503
Tu et al., 2015		whole organism asexual adult colorimetric in situ hybridization evidence
Note: Hover over icons to view figure legend
Alignments
SMED30026394 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.011531:12956..13597 +3210
v31.017297:13739..14413 -3044
v31.014125:14467..15471 +3017
v31.023086:1252..1893 -2415
Homology
[Close]
BLAST of SMED30026394 vs. TrEMBL
Match: I1ZIE8 (Uncharacterized protein (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.702e-55
Identity = 167/180 (92.78%), Postives = 168/180 (93.33%), Query Frame = 2 
Query:   47 QGKPIEKKWFVDDALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPERDRHRSRNDKKWFVDDALHLAGGIV-----------DGAANLAGAAIDVVAGGPERDRHRSRNDKKWFVDDALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPERDRHRSRNYKKSVISKSA 553
            QGKPIEKKWFVDDALH AGGIVGGAANLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNDKKWFVDDALHLAGGIV           DGAANLAGAAIDVVAGGPERDRHRSRNDKKWFVDDALHLAGGIVGGAADLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNYKKSVISK+A
Sbjct:   20 QGKPIEKKWFVDDALHHAGGIVGGAANLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNDKKWFVDDALHLAGGIVGGAANLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNDKKWFVDDALHLAGGIVGGAADLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNYKKSVISKAA 199
[Close]
BLAST of SMED30026394 vs. Planmine SMEST
Match: SMESG000029602.1 (SMESG000029602.1)

HSP 1 Score: 133.65 bits (335), Expect = 1.194e-39
Identity = 106/120 (88.33%), Postives = 109/120 (90.83%), Query Frame = 2 
Query:  227 DKKWFVDDALH-----------LAGGIVDGAANLAGAAIDVVAGGPERDRHRSRNDKKWFVDDALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPERDRHRSRNYKKSVISKSA 553
            +KKWFVDDALH           LAGG+VDGAANLAGAAIDVVAGGPERDRHRSRNDKKWFVDDALHLAGGIVGGAADLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNYKKSVISK+A
Sbjct:   22 EKKWFVDDALHHAGGIVGGAANLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNDKKWFVDDALHLAGGIVGGAADLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNYKKSVISKAA 141

HSP 2 Score: 133.65 bits (335), Expect = 1.220e-39
Identity = 106/124 (85.48%), Postives = 107/124 (86.29%), Query Frame = 2 
Query:   47 QGKPIEKKWFVDDALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPERDRHRSRNDKKWFVDDALHLAGGI-----------VDGAANLAGAAIDVVAGGPERDRHRSRNDKKWFVDDA 385
            QGKPIEKKWFVDDALH AGGIVGGAANLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNDKKWFVDDALHLAGGI           VDGAANLAGAAIDVVAGGPERDRHRSRN KK  +  A
Sbjct:   17 QGKPIEKKWFVDDALHHAGGIVGGAANLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNDKKWFVDDALHLAGGIVGGAADLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNYKKSVISKA 140
[Close]
BLAST of SMED30026394 vs. Planmine SMEST
Match: SMESG000029612.1 (SMESG000029612.1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.281e-21
Identity = 46/64 (71.88%), Postives = 48/64 (75.00%), Query Frame = 2 
Query:  227 DKKWFVDDALHLAGGIV-----------DGAANLAGAAIDVVAGGPERDRHRSRNDKKWFVDDA 385
            +KKWFVDDALHLAGGIV           DGAANLAGAAIDVVAGGPERDRHRSRN KK  +  A
Sbjct:   62 EKKWFVDDALHLAGGIVGGAADLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNYKKSVISKA 125

HSP 2 Score: 57.3806 bits (137), Expect = 1.257e-10
Identity = 67/87 (77.01%), Postives = 71/87 (81.61%), Query Frame = 2 
Query:  293 LAGAAIDVVAGGPERDRHRSRNDKKWFVDDALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPERDRHRSRNYKKSVISKSA 553
            L    + V+ G P         +KKWFVDDALHLAGGIVGGAADLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNYKKSVISK+A
Sbjct:   48 LVALCVSVIQGKPI--------EKKWFVDDALHLAGGIVGGAADLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNYKKSVISKAA 126

HSP 3 Score: 55.8398 bits (133), Expect = 5.406e-10
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = 2 
Query:   47 QGKPIEKKWFVDDALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPERDRHRSRNDKKWFVDDA 253
            QGKPIEKKWFVDDALH+AGGIVGGAA+LAGGVVDGAANLAGAAIDVVAGGPERDRHRSRN KK  +  A
Sbjct:   57 QGKPIEKKWFVDDALHLAGGIVGGAADLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNYKKSVISKA 125
[Close]
BLAST of SMED30026394 vs. Planmine SMEST
Match: SMESG000029612.1 (SMESG000029612.1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.195e-21
Identity = 46/64 (71.88%), Postives = 48/64 (75.00%), Query Frame = 2 
Query:  227 DKKWFVDDALHLAGGIV-----------DGAANLAGAAIDVVAGGPERDRHRSRNDKKWFVDDA 385
            +KKWFVDDALHLAGGIV           DGAANLAGAAIDVVAGGPERDRHRSRN KK  +  A
Sbjct:   72 EKKWFVDDALHLAGGIVGGAADLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNYKKSVISKA 135

HSP 2 Score: 57.3806 bits (137), Expect = 1.876e-10
Identity = 67/87 (77.01%), Postives = 71/87 (81.61%), Query Frame = 2 
Query:  293 LAGAAIDVVAGGPERDRHRSRNDKKWFVDDALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPERDRHRSRNYKKSVISKSA 553
            L    + V+ G P         +KKWFVDDALHLAGGIVGGAADLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNYKKSVISK+A
Sbjct:   58 LVALCVSVIQGKPI--------EKKWFVDDALHLAGGIVGGAADLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNYKKSVISKAA 136

HSP 3 Score: 55.0694 bits (131), Expect = 1.168e-9
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = 2 
Query:   47 QGKPIEKKWFVDDALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPERDRHRSRNDKKWFVDDA 253
            QGKPIEKKWFVDDALH+AGGIVGGAA+LAGGVVDGAANLAGAAIDVVAGGPERDRHRSRN KK  +  A
Sbjct:   67 QGKPIEKKWFVDDALHLAGGIVGGAADLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNYKKSVISKA 135
[Close]
BLAST of SMED30026394 vs. Planmine SMEST
Match: SMESG000029612.1 (SMESG000029612.1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.282e-20
Identity = 45/58 (77.59%), Postives = 46/58 (79.31%), Query Frame = 2 
Query:  227 DKKWFVDDALHLAGGIV-----------DGAANLAGAAIDVVAGGPERDRHRSRNDKK 367
            +KKWFVDDALHLAGGIV           DGAANLAGAAIDVVAGGPERDRHRSRN KK
Sbjct:   62 EKKWFVDDALHLAGGIVGGAADLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNYKK 119

HSP 2 Score: 51.9878 bits (123), Expect = 4.956e-8
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 2 
Query:   47 QGKPIEKKWFVDDALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPERDRHRSRNDKK 235
            QGKPIEKKWFVDDALH+AGGIVGGAA+LAGGVVDGAANLAGAAIDVVAGGPERDRHRSRN KK
Sbjct:   57 QGKPIEKKWFVDDALHLAGGIVGGAADLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNYKK 119

HSP 3 Score: 48.1358 bits (113), Expect = 1.037e-6
Identity = 62/81 (76.54%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  293 LAGAAIDVVAGGPERDRHRSRNDKKWFVDDALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPERDRHRSRNYKKS 535
            L    + V+ G P         +KKWFVDDALHLAGGIVGGAADLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNYKKS
Sbjct:   48 LVALCVSVIQGKP--------IEKKWFVDDALHLAGGIVGGAADLAGGVVDGAANLAGAAIDVVAGGPERDRHRSRNYKKS 120
The following BLAST results are available for this feature:
BLAST of SMED30026394 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026394 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026394 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026394 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026394 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026394 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026394 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026394 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
I1ZIE86.702e-5592.78Uncharacterized protein (Fragment) OS=Schmidtea me... [more]
back to top
BLAST of SMED30026394 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026394 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026394 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026394 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026394 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30026394 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000029602.11.194e-3988.33SMESG000029602.1[more]
SMESG000029612.11.281e-2171.88SMESG000029612.1[more]
SMESG000029612.12.195e-2171.88SMESG000029612.1[more]
SMESG000029612.16.282e-2077.59SMESG000029612.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30026394 ID=SMED30026394|Name=SMED30026394|organism=Schmidtea mediterranea sexual|type=transcript|length=665bp
GAATGTTTTATGTTTATTCCTCGTTGTTGTTAGTGTTTCGGTCCTCCAAG
GAAAGCCCATAGAGAAGAAATGGTTTGTAGATGATGCCTTACACGTTGCA
GGTGGAATCGTTGGTGGAGCTGCCAACCTTGCAGGTGGAGTCGTTGATGG
AGCTGCGAATCTTGCTGGTGCAGCTATAGATGTAGTAGCAGGTGGTCCAG
AAAGAGATCGTCATAGATCACGAAATGACAAGAAATGGTTTGTAGATGAT
GCCTTACACCTTGCAGGTGGAATCGTTGATGGAGCTGCGAATCTTGCTGG
TGCAGCTATAGATGTAGTAGCAGGTGGTCCAGAAAGAGATCGTCATAGAT
CACGAAATGACAAGAAATGGTTTGTAGATGATGCCTTACACCTTGCAGGT
GGAATCGTTGGTGGAGCTGCAGATCTTGCAGGTGGAGTCGTTGATGGAGC
TGCAAATCTTGCTGGTGCAGCTATAGATGTAGTAGCAGGTGGTCCAGAAA
GAGATCGTCATAGATCACGAAATTACAAGAAATCAGTAATAAGCAAATCT
GCATAATAGCAAGGCAAAAATACAAACATTTCCTATACTCGAATGAATCA
ATCATGAATACTTTTTTATAAAATAAATATTTTACAGCTTTAAAAAAAAA
AAAAAAAAATGCGAG
back to top

protein sequence of SMED30026394-orf-1

>SMED30026394-orf-1 ID=SMED30026394-orf-1|Name=SMED30026394-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=185bp
NVLCLFLVVVSVSVLQGKPIEKKWFVDDALHVAGGIVGGAANLAGGVVDG
AANLAGAAIDVVAGGPERDRHRSRNDKKWFVDDALHLAGGIVDGAANLAG
AAIDVVAGGPERDRHRSRNDKKWFVDDALHLAGGIVGGAADLAGGVVDGA
ANLAGAAIDVVAGGPERDRHRSRNYKKSVISKSA*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000035Category 3 cell
PLANA:0000421tail
PLANA:0002142parenchyma
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..184
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.791