SMED30026348

Overview
NameSMED30026348
Smed IDSMED30026348
Length (bp)598
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30026348 (SMED30026348) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30026348 (SMED30026348) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30026348 (SMED30026348) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30026348 (SMED30026348) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30026348

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30026348SMESG000069520.1 SmedASXL_018851SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30026348SMESG000069520.1 dd_Smed_v4_1115_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30026348SMESG000069520.1 dd_Smed_v4_1115_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30026348SMESG000069520.1 dd_Smed_v4_1115_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30026348SMESG000069520.1 OX_Smed_1.0.04453ox_Smed_v2PMID:24238224
Kao et al., 2013		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30026348 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001094:65334..65977 -2873
Homology
[Close]
BLAST of SMED30026348 vs. Ensembl Human
Match: TIMM8B (translocase of inner mitochondrial membrane 8 homolog B [Source:HGNC Symbol;Acc:HGNC:11818])

HSP 1 Score: 81.6481 bits (200), Expect = 4.173e-20
Identity = 32/79 (40.51%), Postives = 51/79 (64.56%), Query Frame = -3 
Query:  297 DTPKSDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKS 533
            +  ++D++++Q+ + +EQQKAQ   QV      CW +C+  P N+LD RT NC+ +CVDRFID  + I  +F + +QK 
Sbjct:    3 ELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVDRFIDTTLAITSRFAQIVQKG 81
[Close]
BLAST of SMED30026348 vs. Ensembl Human
Match: TIMM8B (translocase of inner mitochondrial membrane 8 homolog B [Source:HGNC Symbol;Acc:HGNC:11818])

HSP 1 Score: 82.0333 bits (201), Expect = 5.559e-20
Identity = 32/79 (40.51%), Postives = 51/79 (64.56%), Query Frame = -3 
Query:  297 DTPKSDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKS 533
            +  ++D++++Q+ + +EQQKAQ   QV      CW +C+  P N+LD RT NC+ +CVDRFID  + I  +F + +QK 
Sbjct:   18 ELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVDRFIDTTLAITSRFAQIVQKG 96
[Close]
BLAST of SMED30026348 vs. Ensembl Human
Match: TIMM8A (translocase of inner mitochondrial membrane 8A [Source:HGNC Symbol;Acc:HGNC:11817])

HSP 1 Score: 70.4774 bits (171), Expect = 1.606e-15
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = -3 
Query:  297 DSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKS 515
            D ++Q FIE E QK +  + V Q+T  CW +CM  P  KLD R   C VNCV+RFID +  I  + +++ QKS
Sbjct:   16 DPQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAEACFVNCVERFIDTSQFILNRLEQT-QKS 87
[Close]
BLAST of SMED30026348 vs. Ensembl Celegans
Match: ddp-1 (Mitochondrial import inner membrane translocase subunit Tim8 [Source:UniProtKB/Swiss-Prot;Acc:Q9N408])

HSP 1 Score: 50.447 bits (119), Expect = 1.479e-8
Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = -3 
Query:  345 SDDSKMQQFIE---SEQQKAQILEQVSQLTSTCWSRCMS--TPSNKLDDRTSNCIVNCVDRFID 521
            S D ++ +F++   +E Q+ +  EQV  LT  CW  C +   P +K+D +T  CI NCV+R ID
Sbjct:    3 SADPQLNRFLQQLQAETQRQKFTEQVHTLTGRCWDVCFADYRPPSKMDGKTQTCIQNCVNRMID 66
[Close]
BLAST of SMED30026348 vs. Ensembl Fly
Match: Tim8 (gene:FBgn0027359 transcript:FBtr0343640)

HSP 1 Score: 82.4185 bits (202), Expect = 1.368e-20
Identity = 34/80 (42.50%), Postives = 53/80 (66.25%), Query Frame = -3 
Query:  300 EFDTPKSDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQK 539
            +F+    +D ++Q+F+  E+QKAQ+  Q+ +    CW +C+  PS KLD  T  C+ NCVDRFID +++I Q+F + LQK
Sbjct:    3 DFENLSGNDKELQEFLLIEKQKAQVNAQIHEFNEICWEKCIGKPSTKLDHATETCLSNCVDRFIDTSLLITQRFAQMLQK 82
[Close]
BLAST of SMED30026348 vs. Ensembl Fly
Match: Tim8 (gene:FBgn0027359 transcript:FBtr0073482)

HSP 1 Score: 82.4185 bits (202), Expect = 1.368e-20
Identity = 34/80 (42.50%), Postives = 53/80 (66.25%), Query Frame = -3 
Query:  300 EFDTPKSDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQK 539
            +F+    +D ++Q+F+  E+QKAQ+  Q+ +    CW +C+  PS KLD  T  C+ NCVDRFID +++I Q+F + LQK
Sbjct:    3 DFENLSGNDKELQEFLLIEKQKAQVNAQIHEFNEICWEKCIGKPSTKLDHATETCLSNCVDRFIDTSLLITQRFAQMLQK 82
[Close]
BLAST of SMED30026348 vs. Ensembl Fly
Match: Tim13 (gene:FBgn0036204 transcript:FBtr0076089)

HSP 1 Score: 44.2838 bits (103), Expect = 4.192e-6
Identity = 17/54 (31.48%), Postives = 31/54 (57.41%), Query Frame = -3 
Query:  300 EQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQK 461
            E +S++T  C+ +C+  P   LD     CI  C+DRF+D   ++++ +   LQ+
Sbjct:   26 EMLSKMTEKCFKKCIQKPGKSLDSTEQRCISQCMDRFMDAWNLVSRTYGNRLQR 79
[Close]
BLAST of SMED30026348 vs. Ensembl Zebrafish
Match: timm8b (translocase of inner mitochondrial membrane 8 homolog B (yeast) [Source:ZFIN;Acc:ZDB-GENE-031019-1])

HSP 1 Score: 83.1889 bits (204), Expect = 1.047e-20
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = -3 
Query:  291 FNEEFDTP------KSDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKSFH 548
            F+  FD P      K++ +++Q+ +  EQQKAQ   QV   T  CW +C+  PS+KLD RT  C+V+CV+RFID  + I  +F + +QK  H
Sbjct:    4 FHSSFDLPSAGSSEKAEAAELQRMLAVEQQKAQFQAQVHNFTDVCWDKCVDKPSSKLDSRTETCLVSCVERFIDTTLTITNRFTQMVQKGTH 95
[Close]
BLAST of SMED30026348 vs. Ensembl Zebrafish
Match: timm8a (translocase of inner mitochondrial membrane 8 homolog A (yeast) [Source:NCBI gene;Acc:445243])

HSP 1 Score: 72.4034 bits (176), Expect = 1.426e-16
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = -3 
Query:  309 SDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQES 521
            + D ++QQFIE E QK +  + V Q+T  CW +CM  P  KLD RT  C VNCV+RFID +  I  + +++
Sbjct:   13 ATDPQLQQFIEIESQKQRFQQLVHQMTEVCWEKCMDKPGPKLDSRTEVCFVNCVERFIDTSQFILNRLEQT 83
[Close]
BLAST of SMED30026348 vs. Ensembl Zebrafish
Match: timm8a (translocase of inner mitochondrial membrane 8 homolog A (yeast) [Source:NCBI gene;Acc:445243])

HSP 1 Score: 72.4034 bits (176), Expect = 1.558e-16
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = -3 
Query:  309 SDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQES 521
            + D ++QQFIE E QK +  + V Q+T  CW +CM  P  KLD RT  C VNCV+RFID +  I  + +++
Sbjct:   16 ATDPQLQQFIEIESQKQRFQQLVHQMTEVCWEKCMDKPGPKLDSRTEVCFVNCVERFIDTSQFILNRLEQT 86
[Close]
BLAST of SMED30026348 vs. Ensembl Zebrafish
Match: timm8a (translocase of inner mitochondrial membrane 8 homolog A (yeast) [Source:NCBI gene;Acc:445243])

HSP 1 Score: 72.0182 bits (175), Expect = 1.626e-16
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = -3 
Query:  309 DSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQES 515
            D ++QQFIE E QK +  + V Q+T  CW +CM  P  KLD RT  C VNCV+RFID +  I  + +++
Sbjct:    9 DPQLQQFIEIESQKQRFQQLVHQMTEVCWEKCMDKPGPKLDSRTEVCFVNCVERFIDTSQFILNRLEQT 77
[Close]
BLAST of SMED30026348 vs. Ensembl Xenopus
Match: timm8b (translocase of inner mitochondrial membrane 8 homolog B [Source:NCBI gene;Acc:549853])

HSP 1 Score: 83.1889 bits (204), Expect = 1.407e-20
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = -3 
Query:  291 NMSFNEEFDTPKSDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKSFH 557
            N+  +    +P ++ +++Q+ I  EQQKAQ   QV      CW +CM  P NKLD RT NC+V+CVDRFID  + +  +F + +QK  H
Sbjct:    7 NLDLSGTGASP-AEAAELQRMIAVEQQKAQFTAQVHNFMDVCWDKCMDRPGNKLDSRTENCLVSCVDRFIDTTLSVTNRFAQIVQKGAH 94
[Close]
BLAST of SMED30026348 vs. Ensembl Xenopus
Match: lpgat1 (lysophosphatidylglycerol acyltransferase 1 [Source:Xenbase;Acc:XB-GENE-985546])

HSP 1 Score: 72.0182 bits (175), Expect = 2.043e-16
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = -3 
Query:  297 SDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKS 521
            + D ++Q+FIE+E QK +    V QLT  CW +CM  P  K+D R+  C VNCV+RFID +  I  + +++ QKS
Sbjct:    4 AADPELQRFIEAETQKQRFQTLVHQLTELCWEKCMEKPGPKMDARSEGCFVNCVERFIDTSQFILNRLEQT-QKS 77
[Close]
BLAST of SMED30026348 vs. Ensembl Xenopus
Match: lpgat1 (lysophosphatidylglycerol acyltransferase 1 [Source:Xenbase;Acc:XB-GENE-985546])

HSP 1 Score: 72.0182 bits (175), Expect = 2.779e-16
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = -3 
Query:  297 SDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKS 521
            + D ++Q+FIE+E QK +    V QLT  CW +CM  P  K+D R+  C VNCV+RFID +  I  + +++ QKS
Sbjct:   14 AADPELQRFIEAETQKQRFQTLVHQLTELCWEKCMEKPGPKMDARSEGCFVNCVERFIDTSQFILNRLEQT-QKS 87
[Close]
BLAST of SMED30026348 vs. Ensembl Xenopus
Match: lpgat1 (lysophosphatidylglycerol acyltransferase 1 [Source:Xenbase;Acc:XB-GENE-985546])

HSP 1 Score: 71.633 bits (174), Expect = 3.139e-16
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = -3 
Query:  297 SDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKS 521
            + D ++Q+FIE+E QK +    V QLT  CW +CM  P  K+D R+  C VNCV+RFID +  I  + +++ QKS
Sbjct:    6 AADPELQRFIEAETQKQRFQTLVHQLTELCWEKCMEKPGPKMDARSEGCFVNCVERFIDTSQFILNRLEQT-QKS 79
[Close]
BLAST of SMED30026348 vs. Ensembl Xenopus
Match: lpgat1 (lysophosphatidylglycerol acyltransferase 1 [Source:Xenbase;Acc:XB-GENE-985546])

HSP 1 Score: 72.0182 bits (175), Expect = 3.334e-16
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = -3 
Query:  297 SDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKS 521
            + D ++Q+FIE+E QK +    V QLT  CW +CM  P  K+D R+  C VNCV+RFID +  I  + +++ QKS
Sbjct:   12 AADPELQRFIEAETQKQRFQTLVHQLTELCWEKCMEKPGPKMDARSEGCFVNCVERFIDTSQFILNRLEQT-QKS 85
[Close]
BLAST of SMED30026348 vs. Ensembl Mouse
Match: Timm8b (translocase of inner mitochondrial membrane 8B [Source:MGI Symbol;Acc:MGI:1353424])

HSP 1 Score: 80.1073 bits (196), Expect = 1.341e-19
Identity = 31/79 (39.24%), Postives = 51/79 (64.56%), Query Frame = -3 
Query:  297 DTPKSDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKS 533
            +  ++D++++Q+ + +EQQKAQ   QV      CW +C+  P ++LD RT NC+ +CVDRFID  + I  +F + +QK 
Sbjct:    3 ELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGSRLDSRTENCLSSCVDRFIDTTLAITGRFAQIVQKG 81
[Close]
BLAST of SMED30026348 vs. Ensembl Mouse
Match: Timm8a1 (translocase of inner mitochondrial membrane 8A1 [Source:MGI Symbol;Acc:MGI:1353433])

HSP 1 Score: 70.0922 bits (170), Expect = 1.138e-15
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = -3 
Query:  297 DSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKS 515
            D ++Q FIE E QK +  + V Q+T  CW +CM  P  KLD R   C VNCV+RFID +  I  + +++ QKS
Sbjct:   16 DPQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAEACFVNCVERFIDTSQFILNRLEQT-QKS 87
[Close]
BLAST of SMED30026348 vs. Ensembl Mouse
Match: Timm8a2 (translocase of inner mitochondrial membrane 8A2 [Source:MGI Symbol;Acc:MGI:3615492])

HSP 1 Score: 67.781 bits (164), Expect = 1.041e-14
Identity = 27/71 (38.03%), Postives = 45/71 (63.38%), Query Frame = -3 
Query:  309 SDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQES 521
            S D ++Q+F+E+E QK ++   +  +T  CW +CM  P  +LD R   C+VNCV+RFID +  I  + +++
Sbjct:   14 SSDPQLQRFMEAEVQKQRVQLLIHHMTELCWEKCMDKPGPRLDGRAELCLVNCVERFIDTSQFILNRLEQT 84
[Close]
BLAST of SMED30026348 vs. UniProt/SwissProt
Match: sp|Q9Y1A3|TIM8_DROME (Mitochondrial import inner membrane translocase subunit Tim8 OS=Drosophila melanogaster OX=7227 GN=Tim8 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.371e-19
Identity = 34/80 (42.50%), Postives = 53/80 (66.25%), Query Frame = -3 
Query:  300 EFDTPKSDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQK 539
            +F+    +D ++Q+F+  E+QKAQ+  Q+ +    CW +C+  PS KLD  T  C+ NCVDRFID +++I Q+F + LQK
Sbjct:    3 DFENLSGNDKELQEFLLIEKQKAQVNAQIHEFNEICWEKCIGKPSTKLDHATETCLSNCVDRFIDTSLLITQRFAQMLQK 82
[Close]
BLAST of SMED30026348 vs. UniProt/SwissProt
Match: sp|Q9Y5J9|TIM8B_HUMAN (Mitochondrial import inner membrane translocase subunit Tim8 B OS=Homo sapiens OX=9606 GN=TIMM8B PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.004e-19
Identity = 32/79 (40.51%), Postives = 51/79 (64.56%), Query Frame = -3 
Query:  297 DTPKSDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKS 533
            +  ++D++++Q+ + +EQQKAQ   QV      CW +C+  P N+LD RT NC+ +CVDRFID  + I  +F + +QK 
Sbjct:    3 ELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVDRFIDTTLAITSRFAQIVQKG 81
[Close]
BLAST of SMED30026348 vs. UniProt/SwissProt
Match: sp|Q3SZ93|TIM8B_BOVIN (Mitochondrial import inner membrane translocase subunit Tim8 B OS=Bos taurus OX=9913 GN=TIMM8B PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.199e-19
Identity = 31/79 (39.24%), Postives = 51/79 (64.56%), Query Frame = -3 
Query:  297 DTPKSDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKS 533
            +  ++D++++Q+ + +EQQKAQ   QV      CW +C+  P N+LD RT NC+ +CVDRFID  + I  +F + +Q+ 
Sbjct:    3 ELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVDRFIDTTLAITSRFAQIVQRG 81
[Close]
BLAST of SMED30026348 vs. UniProt/SwissProt
Match: sp|P62078|TIM8B_RAT (Mitochondrial import inner membrane translocase subunit Tim8 B OS=Rattus norvegicus OX=10116 GN=Timm8b PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.377e-19
Identity = 31/79 (39.24%), Postives = 51/79 (64.56%), Query Frame = -3 
Query:  297 DTPKSDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKS 533
            +  ++D++++Q+ + +EQQKAQ   QV      CW +C+  P ++LD RT NC+ +CVDRFID  + I  +F + +QK 
Sbjct:    3 ELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGSRLDSRTENCLSSCVDRFIDTTLAITGRFAQIVQKG 81
[Close]
BLAST of SMED30026348 vs. UniProt/SwissProt
Match: sp|P62077|TIM8B_MOUSE (Mitochondrial import inner membrane translocase subunit Tim8 B OS=Mus musculus OX=10090 GN=Timm8b PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.377e-19
Identity = 31/79 (39.24%), Postives = 51/79 (64.56%), Query Frame = -3 
Query:  297 DTPKSDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKS 533
            +  ++D++++Q+ + +EQQKAQ   QV      CW +C+  P ++LD RT NC+ +CVDRFID  + I  +F + +QK 
Sbjct:    3 ELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGSRLDSRTENCLSSCVDRFIDTTLAITGRFAQIVQKG 81
[Close]
BLAST of SMED30026348 vs. TrEMBL
Match: A0A182YA64 (zf-Tim10_DDP domain-containing protein OS=Anopheles stephensi OX=30069 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.594e-20
Identity = 38/80 (47.50%), Postives = 58/80 (72.50%), Query Frame = -3 
Query:  297 DTPKSD-DSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKS 533
            DTPK + D ++Q F+ +E ++A++  Q+ + T  CW RC+  PSNKLD RT  C+ NCV+RF+D +++I Q+F +SLQKS
Sbjct:    8 DTPKPNVDPELQDFLMAENERARLSAQIHEFTDICWDRCVEKPSNKLDSRTETCLANCVNRFVDTSLLITQRFAQSLQKS 87
[Close]
BLAST of SMED30026348 vs. TrEMBL
Match: A0A2A4JT37 (zf-Tim10_DDP domain-containing protein OS=Heliothis virescens OX=7102 GN=B5V51_12634 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.543e-19
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = -3 
Query:  297 MSFNEEFDTPKSDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKS 554
            MS   +F TPK  DS++Q F+ +E+QKAQ   Q+ +    CW +C+  P  KLD RT  CI NCV+RFID++++I  +F + L+K 
Sbjct:    1 MSDISDFSTPKGADSELQDFLLAEKQKAQFHAQIHEFNDFCWDKCVDKPGAKLDSRTETCITNCVERFIDVSLLITNRFAQMLEKG 86
[Close]
BLAST of SMED30026348 vs. TrEMBL
Match: A0A182STM5 (zf-Tim10_DDP domain-containing protein OS=Anopheles maculatus OX=74869 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.138e-19
Identity = 38/80 (47.50%), Postives = 58/80 (72.50%), Query Frame = -3 
Query:  297 DTPK-SDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKS 533
            DTPK S D ++Q F+ +E ++A++  Q+ + T  CW +C+  PSNKLD RT  C+ NCV+RF+D +++I Q+F +SLQKS
Sbjct:    8 DTPKPSVDPELQDFLMAENERARLSAQIHEFTDICWDKCVEKPSNKLDSRTETCLANCVNRFVDTSLLITQRFAQSLQKS 87
[Close]
BLAST of SMED30026348 vs. TrEMBL
Match: B4NE98 (zf-Tim10_DDP domain-containing protein OS=Drosophila willistoni OX=7260 GN=Dwil\GK25334 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.767e-19
Identity = 36/80 (45.00%), Postives = 56/80 (70.00%), Query Frame = -3 
Query:  300 EFDTPKSDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQK 539
            EF+   ++D ++Q+F+  E+QKAQ+  Q+ +    CW +C+  PSNKLD  T  C+ NCVDRFID +++I Q+F ++LQK
Sbjct:    3 EFEDLSANDKELQEFLMIEKQKAQVHAQIHEFNEICWEKCIGKPSNKLDSATETCLSNCVDRFIDTSLLITQRFAQALQK 82
[Close]
BLAST of SMED30026348 vs. TrEMBL
Match: A0A2W1BR18 (zf-Tim10_DDP domain-containing protein OS=Helicoverpa armigera OX=29058 GN=HaOG204159 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.449e-19
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = -3 
Query:  297 MSFNEEFDTPKSDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKS 554
            MS   +F  PK  DS++Q F+ +E+QKAQ   Q+ +    CW +C+  P  KLD RT  CI NCV+RFID++++I  +F + L+K 
Sbjct:    1 MSDLSDFSAPKGADSELQDFLLAEKQKAQFHAQIHEFNDFCWDKCVDKPGAKLDSRTETCITNCVERFIDVSLLITNRFAQMLEKG 86
[Close]
BLAST of SMED30026348 vs. Ensembl Cavefish
Match: timm8b (translocase of inner mitochondrial membrane 8 homolog B [Source:NCBI gene;Acc:103027997])

HSP 1 Score: 82.8037 bits (203), Expect = 1.231e-20
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = -3 
Query:  291 FDTP------KSDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKSFH 536
            FD P      K++ +++Q+ +  EQQKAQ   QV   T  CW +CM  PS+KLD RT  C+V+CV+RFID  + I  +F + +QK  H
Sbjct:    7 FDMPDSGSAEKAEAAELQRMLAVEQQKAQFQAQVHNFTDVCWDKCMDKPSSKLDSRTEACLVSCVERFIDTTLAITNRFSQMVQKGTH 94
[Close]
BLAST of SMED30026348 vs. Ensembl Cavefish
Match: timm8a (translocase of inner mitochondrial membrane 8A [Source:NCBI gene;Acc:107197049])

HSP 1 Score: 72.4034 bits (176), Expect = 1.226e-16
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = -3 
Query:  309 DSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQES 515
            D  +QQFIE E QK +  + V Q+T  CW +CM  P  KLD RT  C VNCV+RFID +  I  + +++
Sbjct:    9 DPHLQQFIEVESQKQRFQQLVHQMTEVCWEKCMDKPGPKLDSRTEVCFVNCVERFIDTSQFILNRLEQT 77
[Close]
BLAST of SMED30026348 vs. Ensembl Cavefish
Match: timm13 (translocase of inner mitochondrial membrane 13 [Source:NCBI gene;Acc:103034199])

HSP 1 Score: 46.2098 bits (108), Expect = 8.016e-7
Identity = 24/89 (26.97%), Postives = 44/89 (49.44%), Query Frame = -3 
Query:  300 SFNEEFDTPKSDDSKMQQFIESEQQKAQIL-----EQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQK 551
            SF  ++ +  +   KM      EQ K QI      E + ++T  C+ +C+  P + LD+    CI  C+DR++D    +++ +   LQ+
Sbjct:    3 SFGSDYSSA-AGSGKMDTGTIMEQVKVQIAVANAQELLQRMTDKCFKKCIGKPGSTLDNSEQKCIAMCMDRYMDAWNTVSRAYNSRLQR 90
[Close]
BLAST of SMED30026348 vs. Ensembl Yeast
Match: TIM8 (Mitochondrial intermembrane space protein; forms a complex with Tim13p that delivers a subset of hydrophobic proteins to the TIM22 complex for inner membrane insertion; homolog of human TIMM8A, implicated in Mohr-Tranebjaerg syndrome, also known as deafness-dystonia-optic neuronopathy (DDON) syndrome; human TIMM8A can complement yeast null mutant [Source:SGD;Acc:S000007348])

HSP 1 Score: 44.2838 bits (103), Expect = 5.277e-7
Identity = 23/76 (30.26%), Postives = 40/76 (52.63%), Query Frame = -3 
Query:  309 DTPKSDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCM-STPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQES 533
            DT K +   +  F+E E  K ++   + Q T+ C+ +C+ S   + L  +   C+ NCV+RF+D N+ I    Q +
Sbjct:   14 DTSKKE---IATFLEGENSKQKVQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNT 86
[Close]
BLAST of SMED30026348 vs. Ensembl Nematostella
Match: EDO44492 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RVQ3])

HSP 1 Score: 80.4925 bits (197), Expect = 2.572e-20
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = -3 
Query:  297 DSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKS 515
            D  ++Q +  E+QKA+   QV + T TCW +CM  P NKLD +T  C+VNCV+RFID  ++I ++F E +Q+S
Sbjct:    8 DPALRQELMIEEQKAKFQMQVHKFTDTCWDKCMDKPGNKLDGKTETCLVNCVERFIDTTLLITKRFGELVQRS 80
[Close]
BLAST of SMED30026348 vs. Ensembl Nematostella
Match: EDO26210 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RVQ3])

HSP 1 Score: 80.4925 bits (197), Expect = 2.572e-20
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = -3 
Query:  297 DSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKS 515
            D  ++Q +  E+QKA+   QV + T TCW +CM  P NKLD +T  C+VNCV+RFID  ++I ++F E +Q+S
Sbjct:    8 DPALRQELMIEEQKAKFQMQVHKFTDTCWDKCMDKPGNKLDGKTETCLVNCVERFIDTTLLITKRFGELVQRS 80
[Close]
BLAST of SMED30026348 vs. Ensembl Medaka
Match: timm8b (translocase of inner mitochondrial membrane 8 homolog B [Source:NCBI gene;Acc:101168064])

HSP 1 Score: 83.9593 bits (206), Expect = 3.212e-21
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = -3 
Query:  291 FNEEFDTPKSDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKSFH 548
            FN    + K++ +++Q+ I  EQQKAQ   QV   T  CW +C+ TP +KLD RT  C+V+CV+RFID  + I  +F + +QK  H
Sbjct:    4 FNSLSSSEKAEAAELQRMIAVEQQKAQFQAQVHTFTDVCWDKCVDTPGSKLDHRTETCLVSCVERFIDTTLTITNRFTQMVQKGAH 89
[Close]
BLAST of SMED30026348 vs. Ensembl Medaka
Match: timm8a (translocase of inner mitochondrial membrane 8A [Source:NCBI gene;Acc:101168298])

HSP 1 Score: 72.4034 bits (176), Expect = 9.743e-17
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = -3 
Query:  309 DSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQES 515
            D ++Q FIE E QK +  + V Q+T  CW +CM  P  KLD RT +C VNCV+RFID +  I  + +++
Sbjct:    9 DPQLQHFIEIESQKQRFQQLVHQMTEVCWEKCMDKPGPKLDSRTESCFVNCVERFIDTSQFILNRLEQT 77
[Close]
BLAST of SMED30026348 vs. Ensembl Medaka
Match: timm13 (translocase of inner mitochondrial membrane 13 [Source:NCBI gene;Acc:101175143])

HSP 1 Score: 43.5134 bits (101), Expect = 8.272e-6
Identity = 23/75 (30.67%), Postives = 38/75 (50.67%), Query Frame = -3 
Query:  300 KMQQFIESEQQKAQIL-----EQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQK 509
            KM      EQ K QI      E + ++T  C+ +C+  P + LD+    CI  C+DR++D    +++ +   LQK
Sbjct:   16 KMDTGTIMEQVKVQIAVANAQELLQRMTDKCFKKCIGKPGSSLDNSEQKCIAMCMDRYMDAWNTVSRTYNSRLQK 90
[Close]
BLAST of SMED30026348 vs. Planmine SMEST
Match: SMESG000069520.1 (SMESG000069520.1)

HSP 1 Score: 179.489 bits (454), Expect = 8.935e-59
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = -3 
Query:  288 MSFNEEFDTPKSDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKSFHQ 554
            MSFNEEFD PKSDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKSFHQ
Sbjct:    1 MSFNEEFDAPKSDDSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQKSFHQ 89
[Close]
BLAST of SMED30026348 vs. Planmine SMEST
Match: SMESG000071085.1 (SMESG000071085.1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.039e-10
Identity = 26/71 (36.62%), Postives = 40/71 (56.34%), Query Frame = -3 
Query:  303 DSKMQQFIESEQQKAQILEQVSQLTSTCWSRCMSTPSNKLDDRTSNCIVNCVDRFIDLNVVIAQKFQESLQ 515
            DSK+Q +  +EQ+K +++  ++ LT  CW RC    S  L      CI NCVDRF+D +  +A++     Q
Sbjct:    2 DSKIQSWAANEQKKMELVSYINDLTKKCWDRCNIKVSASLATGDQKCIANCVDRFLDSSAFVARELPGRAQ 72
The following BLAST results are available for this feature:
BLAST of SMED30026348 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3
Match NameE-valueIdentityDescription
TIMM8B4.173e-2040.51translocase of inner mitochondrial membrane 8 homo... [more]
TIMM8B5.559e-2040.51translocase of inner mitochondrial membrane 8 homo... [more]
TIMM8A1.606e-1545.21translocase of inner mitochondrial membrane 8A [So... [more]
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BLAST of SMED30026348 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ddp-11.479e-839.06Mitochondrial import inner membrane translocase su... [more]
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BLAST of SMED30026348 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Tim81.368e-2042.50gene:FBgn0027359 transcript:FBtr0343640[more]
Tim81.368e-2042.50gene:FBgn0027359 transcript:FBtr0073482[more]
Tim134.192e-631.48gene:FBgn0036204 transcript:FBtr0076089[more]
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BLAST of SMED30026348 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
timm8b1.047e-2041.30translocase of inner mitochondrial membrane 8 homo... [more]
timm8a1.426e-1645.07translocase of inner mitochondrial membrane 8 homo... [more]
timm8a1.558e-1645.07translocase of inner mitochondrial membrane 8 homo... [more]
timm8a1.626e-1646.38translocase of inner mitochondrial membrane 8 homo... [more]
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BLAST of SMED30026348 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
timm8b1.407e-2041.57translocase of inner mitochondrial membrane 8 homo... [more]
lpgat12.043e-1644.00lysophosphatidylglycerol acyltransferase 1 [Source... [more]
lpgat12.779e-1644.00lysophosphatidylglycerol acyltransferase 1 [Source... [more]
lpgat13.139e-1644.00lysophosphatidylglycerol acyltransferase 1 [Source... [more]
lpgat13.334e-1644.00lysophosphatidylglycerol acyltransferase 1 [Source... [more]
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BLAST of SMED30026348 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Timm8b1.341e-1939.24translocase of inner mitochondrial membrane 8B [So... [more]
Timm8a11.138e-1545.21translocase of inner mitochondrial membrane 8A1 [S... [more]
Timm8a21.041e-1438.03translocase of inner mitochondrial membrane 8A2 [S... [more]
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BLAST of SMED30026348 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9Y1A3|TIM8_DROME1.371e-1942.50Mitochondrial import inner membrane translocase su... [more]
sp|Q9Y5J9|TIM8B_HUMAN2.004e-1940.51Mitochondrial import inner membrane translocase su... [more]
sp|Q3SZ93|TIM8B_BOVIN4.199e-1939.24Mitochondrial import inner membrane translocase su... [more]
sp|P62078|TIM8B_RAT9.377e-1939.24Mitochondrial import inner membrane translocase su... [more]
sp|P62077|TIM8B_MOUSE9.377e-1939.24Mitochondrial import inner membrane translocase su... [more]
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BLAST of SMED30026348 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A182YA646.594e-2047.50zf-Tim10_DDP domain-containing protein OS=Anophele... [more]
A0A2A4JT371.543e-1944.19zf-Tim10_DDP domain-containing protein OS=Heliothi... [more]
A0A182STM53.138e-1947.50zf-Tim10_DDP domain-containing protein OS=Anophele... [more]
B4NE984.767e-1945.00zf-Tim10_DDP domain-containing protein OS=Drosophi... [more]
A0A2W1BR186.449e-1943.02zf-Tim10_DDP domain-containing protein OS=Helicove... [more]
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BLAST of SMED30026348 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
timm8b1.231e-2043.18translocase of inner mitochondrial membrane 8 homo... [more]
timm8a1.226e-1646.38translocase of inner mitochondrial membrane 8A [So... [more]
timm138.016e-726.97translocase of inner mitochondrial membrane 13 [So... [more]
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BLAST of SMED30026348 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026348 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
TIM85.277e-730.26Mitochondrial intermembrane space protein; forms a... [more]
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BLAST of SMED30026348 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO444922.572e-2046.58Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO262102.572e-2046.58Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of SMED30026348 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
timm8b3.212e-2143.02translocase of inner mitochondrial membrane 8 homo... [more]
timm8a9.743e-1744.93translocase of inner mitochondrial membrane 8A [So... [more]
timm138.272e-630.67translocase of inner mitochondrial membrane 13 [So... [more]
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BLAST of SMED30026348 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000069520.18.935e-5998.88SMESG000069520.1[more]
SMESG000071085.11.039e-1036.62SMESG000071085.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30026348 ID=SMED30026348|Name=SMED30026348|organism=Schmidtea mediterranea sexual|type=transcript|length=598bp
TCAACATCAGATAAATGTATTGGGATATAGCTAATAAATCATAGTTCAAT
TTCATATTTATCTAGCAATTAATTATATCATATTGAAAACAAACAATATA
AAACGAAAAAATGACTTATTTTTAAAGTTTAAAGTCCCACAATTCTCAAT
TTGATAGTTTAATACAAATAAAATAAAATATAAACAAAATACGGATAACA
AAAAACTTACTAAATATTCGAAAAATAAATTTTATATATTCCAAAATATT
GAAAAATTCAATAAACTATGACCTAATATATTATTTACTGATGAAATGAC
TTCTGTAAACTTTCTTGGAACTTTTGAGCAATAACTACATTGAGATCAAT
AAATCGATCTACACAATTGACAATACAATTAGAAGTGCGATCATCGAGCT
TATTACTGGGTGTAGACATACATCTTGACCAACACGTGCTGGTAAGTTGA
GAAACTTGCTCAAGTATTTGAGCTTTTTGTTGCTCAGATTCTATAAATTG
TTGCATTTTAGAGTCATCTGATTTTGGTGTATCGAATTCTTCATTGAATG
ACATATTTAAAATCTAACCTCAGATTGAATTTTAAAACAAAATAAGTA
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000418head
PLANA:0000429neoblast
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR035427Tim10-like_dom_sf
IPR039238Tim8/13
IPR004217Tim10-like
Vocabulary: cellular component
TermDefinition
GO:0005758mitochondrial intermembrane space
Vocabulary: biological process
TermDefinition
GO:0072321chaperone-mediated protein transport
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035427Tim10-like domain superfamilyGENE3DG3DSA:1.10.287.810coord: 21..83
e-value: 1.2E-21
score: 77.9
IPR035427Tim10-like domain superfamilySUPERFAMILYSSF144122Tim10-likecoord: 26..86
IPR004217Tim10-likePFAMPF02953zf-Tim10_DDPcoord: 19..81
e-value: 2.8E-21
score: 74.9
IPR039238Mitochondrial import inner membrane translocase subunit Tim8/13PANTHERPTHR19338TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOGcoord: 9..87
NoneNo IPR availablePANTHERPTHR19338:SF7MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM8 Bcoord: 9..87