CCHC-type domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30026346 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 6
Homology
BLAST of CCHC-type domain-containing protein vs. TrEMBL
Match: A0A5S6Q1P2 (Uncharacterized protein OS=Trichuris muris OX=70415 PE=4 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.640e-50 Identity = 44/114 (38.60%), Postives = 70/114 (61.40%), Query Frame = 2 Query: 1505 VLSKEIEEMVEMG*RCVAIDLKSAYLQIRVAESL*AFEVVKLQRKTFALTRLGFGLNVAPKIMTTVLKHVLSMDAGICKGMDAYINDKFVNTSLVSAESVVKHL*KFELDAKNP 1846 V + ++ + G +DLK AYLQ+RV E+L ++ V+ + + + LTRLGFGLNVAP ++ +L VLS D I +G AY++D VN ++ A V + L ++ L+ K+P Sbjct: 791 VCADKLRQWRRQGANVAMVDLKDAYLQVRVNEALWPYQTVEFRGRRYCLTRLGFGLNVAPLVLKAILNFVLSQDPAIKRGTSAYVDDILVNEDVIPASRVKEELERYGLECKSP 904 HSP 2 Score: 85.5001 bits (210), Expect = 7.640e-50 Identity = 55/211 (26.07%), Postives = 92/211 (43.60%), Query Frame = 1 Query: 2056 WDQELDTMTVA-IMRKITDKV*KQDPVEGEWNVKNTDSAIFWCDASSLAYGVVV*IGT----------------------------------------------------VRERVNGNMDLILS-YHMDHYFGVNRTLFSARKMDLLVSKSSIKEIVGQCKTSKRVYSLPIKSSKGKSSVTEVWQRLAVDTTHYLNSVFWSIIDCGPSRFS 2526 WD+ +D T+ ++++I +V + DP G WNV D A W DAS +A GV + +G + + + G LI + +H + GV RT + R+ D +++S ++ +V +C+ + + P K +G V VWQR+A+D TH + ++IDCGPSRF+ Sbjct: 980 WDEPIDDGTIGPLLKEIAARVKEHDPARGIWNVSG-DRARIWVDASGVALGVALEVGGAIVEDASWLRRDDAQHINMAELDAVIRGLNLAIAWKMTIIELMTDSSTVYRWIADGLTGAKRLITAVHHAAGHPGVRRTSYFVRRADPTLNRSLVRRVVSECQVCQSIDPPPAKWERGSLEVPRVWQRVAIDITHCGSRPVLTLIDCGPSRFA 1189 HSP 3 Score: 65.4698 bits (158), Expect = 7.640e-50 Identity = 32/93 (34.41%), Postives = 51/93 (54.84%), Query Frame = 1 Query: 1240 TVKWDWIDS-APETKKPSISQYKVSHKAENEFNEAVENWIKNGWLQTYS----GEIKAVLPLLAVIQQNKAKVRPVLDYGKINEHVSSHNAQA 1503 + W W P K S+ +Y S A + + +E WI+ WL Y G +K ++PL+AV+Q++K KVRPV+D+ ++N H+ A A Sbjct: 697 SAAWKWTGGEGPAVLKNSVKEYSPSAWARASYEKELEKWIQKAWLVPYDCRRYGPVKGLIPLMAVVQRHKQKVRPVMDFRELNAHIEPFTAAA 789 HSP 4 Score: 25.7942 bits (55), Expect = 7.640e-50 Identity = 11/33 (33.33%), Postives = 22/33 (66.67%), Query Frame = 3 Query: 1944 EITKRQLLSWAGQMIEHFPV-EVV*SSCSFVKR 2039 E+T+R + ++ G+++ H PV + + +FVKR Sbjct: 939 ELTRRAVFAYCGELVGHLPVCGWLRVAAAFVKR 971
BLAST of CCHC-type domain-containing protein vs. TrEMBL
Match: A0A085NTN9 (Uncharacterized protein OS=Trichuris suis OX=68888 GN=M514_14739 PE=4 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 4.754e-44 Identity = 52/119 (43.70%), Postives = 74/119 (62.18%), Query Frame = 2 Query: 1490 TMRKRVLSKEIEEMVEMG*RCVAIDLKSAYLQIRVAESL*AFEVVKLQRKTFALTRLGFGLNVAPKIMTTVLKHVLSMDAGICKGMDAYINDKFVNTSLVSAESVVKHL*KFELDAKNP 1846 T + V ++ + E G +DL+ AYLQ+ V +L ++ V ++ + + LTRLGFGLNVAP IM V+ VLS+D I KG AYI+D FVN ++VSA V++HL K+ L K P Sbjct: 699 TAKSDVCAQMLREWRRQGVNVSILDLRKAYLQVCVDRTLWPYQTVVVKDRRYCLTRLGFGLNVAPMIMKAVISRVLSLDPDIQKGTSAYIDDIFVNENVVSANHVIQHLAKYGLSCKVP 817 HSP 2 Score: 84.3445 bits (207), Expect = 4.754e-44 Identity = 39/110 (35.45%), Postives = 67/110 (60.91%), Query Frame = 1 Query: 1195 IDDKDL*ANFE--RNA*TVKWDWI-DSAPETKKPSISQYKVSHKAENEFNEAVENWIKNGWLQTYS----GEIKAVLPLLAVIQQNKAKVRPVLDYGKINEHVSSHNAQA 1503 +D+KD A ++ N T W W D+APE + + ++ + + E +E WI+NGWL Y G KA++PL+AVIQ++K KVRPV+D+ ++N ++ ++ A++ Sbjct: 593 VDEKDFVATYDPATNTWTTAWKWANDAAPEVLRNTKEEFPLPEGIREAYTEELEQWIQNGWLIPYDESKFGPAKALIPLMAVIQRSKGKVRPVMDFRELNSYIDTYTAKS 702 HSP 3 Score: 41.2022 bits (95), Expect = 4.754e-44 Identity = 21/54 (38.89%), Postives = 32/54 (59.26%), Query Frame = 1 Query: 2056 WDQE-LDTMTVAIMRKITDKV*KQDPVEGEWNVKNTDSAIFWCDASSLAYGVVV 2214 WD+ LD +R+I ++ DP +G W+V +T + W DAS+LA GVV+ Sbjct: 893 WDEPILDEQVQEHLREIAARLKVHDPAQGRWDVASTKVRL-WVDASALALGVVL 945 HSP 4 Score: 25.0238 bits (53), Expect = 4.754e-44 Identity = 12/41 (29.27%), Postives = 26/41 (63.41%), Query Frame = 3 Query: 1947 ITKRQLLSWAGQMIEHFPV-EVV*SSCSFVKRLSGDRMGSR 2066 +T+R + ++ G ++ H+PV + + +F+KR +R+ SR Sbjct: 853 LTRRTVFAYCGALVGHYPVCGWLRPATAFIKR-EANRVTSR 892 HSP 5 Score: 63.929 bits (154), Expect = 2.572e-6 Identity = 28/79 (35.44%), Postives = 44/79 (55.70%), Query Frame = 1 Query: 2290 GVNRTLFSARKMDLLVSKSSIKEIVGQCKTSKRVYSLPIKSSKGKSSVTEVWQRLAVDTTHYLNSVFWSIIDCGPSRFS 2526 GV RTL+ A++ D VSK+ +V C + + P+K G V QR+++D T + + ++IDCGPSRF+ Sbjct: 1097 GVKRTLYFAKRRDPTVSKTQKNRVVSNCHICRSIDPAPVKWRHGNHGVAGWRQRVSIDVTQFRGKAYLTLIDCGPSRFA 1175
BLAST of CCHC-type domain-containing protein vs. TrEMBL
Match: A0A085LPJ9 (Uncharacterized protein OS=Trichuris suis OX=68888 GN=M513_12253 PE=4 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.291e-44 Identity = 52/119 (43.70%), Postives = 74/119 (62.18%), Query Frame = 2 Query: 1490 TMRKRVLSKEIEEMVEMG*RCVAIDLKSAYLQIRVAESL*AFEVVKLQRKTFALTRLGFGLNVAPKIMTTVLKHVLSMDAGICKGMDAYINDKFVNTSLVSAESVVKHL*KFELDAKNP 1846 T + V ++ + E G +DL+ AYLQ+ V +L ++ V ++ + + LTRLGFGLNVAP IM V+ VLS+D I KG AYI+D FVN ++VSA V++HL K+ L K P Sbjct: 265 TAKSDVCAQMLREWRRQGVNVSILDLRKAYLQVCVDRTLWPYQTVVVKDRRYCLTRLGFGLNVAPMIMKAVISRVLSLDPDIQKGTSAYIDDIFVNENVVSANHVIQHLAKYGLSCKVP 383 HSP 2 Score: 80.8777 bits (198), Expect = 7.291e-44 Identity = 39/111 (35.14%), Postives = 67/111 (60.36%), Query Frame = 1 Query: 1192 NIDDKDL*ANFE--RNA*TVKWDWI-DSAPETKKPSISQYKVSHKAENEFNEAVENWIKNGWLQTYS----GEIKAVLPLLAVIQQNKAKVRPVLDYGKINEHVSSHNAQA 1503 +D+KD A ++ N T W W D+APE + + ++ + + E +E WI+NGWL Y G KA++PL+AVIQ++K KVRPV+D+ ++N ++ ++ A++ Sbjct: 158 RVDEKDFVATYDPATNTWTTAWKWANDAAPEVLRNTKEEFPLPEGIREAYTEELEQWIQNGWLIPYDESKFGPAKALIPLMAVIQRSKGKVRPVMDFRELNSYIDTYTAKS 268 HSP 3 Score: 43.8986 bits (102), Expect = 7.291e-44 Identity = 55/225 (24.44%), Postives = 102/225 (45.33%), Query Frame = 1 Query: 2056 WDQE-LDTMTVAIMRKITDKV*KQDPVEGEWNVKNTDSAIFWCDASSLAYGVVV*I-GTVRE-------------------RVNGNMDLILSYHMDHYFGVNRTLFSARKM-DLLVSKSSIK-EIVGQCKTSKRVYSL--------------PIKSSKGKS-SVTEVWQR--------------LAVDTTHYLNSVFWSIIDCGPSRFSN-QEIKY-TFVIIFDQ 2568 WD+ LD +R+I ++ DP +G W+V +T + W DAS+LA GVV+ + G V E V ++L LS+ M + +L R + D L ++ +K + + +R+ ++ ++S++ ++ ++T V +R +++D T + + ++IDCGPSRF+ + +KY T V I +Q Sbjct: 459 WDEPILDEQVQEHLREIAARLKVHDPAQGRWDVASTKVRL-WVDASALALGVVLEVNGAVIEDAAWLRSDDTQHINMAELDAVIKGLNLGLSWQMKDIELMTDSLTVHRWLNDSLSGRTRLKTKAASEMLIRRRMATILALVEEYNLNLGVTLVRSAENRADALTRVPRRWLTPTERTEVAACRVSIDVTQFRGKAYLTLIDCGPSRFAIWRPLKYHTSVDICEQ 682 HSP 4 Score: 24.6386 bits (52), Expect = 7.291e-44 Identity = 12/41 (29.27%), Postives = 26/41 (63.41%), Query Frame = 3 Query: 1947 ITKRQLLSWAGQMIEHFPV-EVV*SSCSFVKRLSGDRMGSR 2066 +T+R + ++ G ++ H+PV + + +F+KR +R+ SR Sbjct: 419 LTRRTVFAYCGALVGHYPVCGWLRPATAFIKR-EANRVTSR 458
BLAST of CCHC-type domain-containing protein vs. TrEMBL
Match: A0A5S6R6C8 (Uncharacterized protein OS=Trichuris muris OX=70415 PE=4 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.063e-42 Identity = 51/112 (45.54%), Postives = 68/112 (60.71%), Query Frame = 2 Query: 1505 VLSKEIEEMVEMG*RCVAIDLKSAYLQIRVAESL*AFEVVKLQRKTFALTRLGFGLNVAPKIMTTVLKHVLSMDAGICKGMDAYINDKFVNTSLVSAESVVKHL*KFELDAK 1840 V ++++ E + G +DLK AYLQI V SL ++ V + + + LTRLGFGLNVAP IM VL VLS D+ + KG AYI+D VN +V A V +HL +F L K Sbjct: 487 VCAQKLREWRKQGANVSVVDLKRAYLQIHVDRSLWPYQTVMYKGRRYCLTRLGFGLNVAPLIMKAVLNCVLSQDSTVKKGTSAYIDDILVNEDVVKATRVERHLARFGLTCK 598 HSP 2 Score: 75.8702 bits (185), Expect = 2.063e-42 Identity = 52/188 (27.66%), Postives = 87/188 (46.28%), Query Frame = 1 Query: 964 GNEINLNVLVTPKVVPACEVQLEMDVISILKGVIFRGIK-VTLANGHMRP*ICCLGVNVDTNEQGVIESRRVPNSV*NIDDKDL*A--NFERNA*TVKWDWIDS-APETKKPSISQYKVSHKAENEFNEAVENWIKNGWLQTYS----GEIKAVLPLLAVIQQNKAKVRPVLDYGKINEHVSSHNAQA 1503 G+E + +VT K E+ L M+ I+ L GV R + + G+ C G + ++++D A N A T +W W + P + + + +Y S + ++ E + WIKNGWL Y G K ++PL+AV Q NK KVRPV+D+ ++N ++ + A + Sbjct: 316 GSEAAVEAIVTDKRPLGFELILGMNGIAALGGVTVRDERRINFGVGNTFAAAVCNGGEI------------------RLEERDFTAIYNPTVRAWTARWKWTNGMQPTSLRNKVREYPPSGEVREKYEEELGEWIKNGWLVPYDESKWGPAKGLIPLMAVSQDNKGKVRPVMDFRELNSYIEAFTADS 485 HSP 3 Score: 54.6842 bits (130), Expect = 2.063e-42 Identity = 35/110 (31.82%), Postives = 57/110 (51.82%), Query Frame = 1 Query: 1909 WNRDN*IDESQERSPSDNCFHGLGK*SNIFQ----LKLFDRLVRL*NDYLVTGWDQELDTMTV-AIMRKITDKV*KQDPVEGEWNVKNTDSAIFWCDASSLAYGVVV*IG 2223 W RD + + ER + F GK + F L++ ++ + + T WDQ ++ + +++ ++ KV DPV G WNV + A W DASSLA+GVV+ +G Sbjct: 623 WRRDAEVCNAPERLTRRSVFSFCGKLTGHFPVCGWLRVAAAFIKRKANEVTTSWDQVIENAELESLINEVASKVRSNDPVGGRWNVSG-EKARVWVDASSLAHGVVIEVG 731 HSP 4 Score: 76.2554 bits (186), Expect = 3.282e-10 Identity = 32/86 (37.21%), Postives = 54/86 (62.79%), Query Frame = 1 Query: 2269 YHMDHYFGVNRTLFSARKMDLLVSKSSIKEIVGQCKTSKRVYSLPIKSSKGKSSVTEVWQRLAVDTTHYLNSVFWSIIDCGPSRFS 2526 +H + GV RTL+ ++++ +VSK +++ + C + V P+K +G V E+WQR+A+D THY + S++DCGPSRF+ Sbjct: 873 HHKMGHPGVRRTLYFVKRINPMVSKRQVRQTIVNCDACQSVDPAPVKWKQGCLGVKEIWQRVAMDITHYRGMSYLSLVDCGPSRFA 958
BLAST of CCHC-type domain-containing protein vs. TrEMBL
Match: A0A5S6Q4C2 (Uncharacterized protein OS=Trichuris muris OX=70415 PE=4 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.076e-42 Identity = 51/112 (45.54%), Postives = 68/112 (60.71%), Query Frame = 2 Query: 1505 VLSKEIEEMVEMG*RCVAIDLKSAYLQIRVAESL*AFEVVKLQRKTFALTRLGFGLNVAPKIMTTVLKHVLSMDAGICKGMDAYINDKFVNTSLVSAESVVKHL*KFELDAK 1840 V ++++ E + G +DLK AYLQI V SL ++ V + + + LTRLGFGLNVAP IM VL VLS D+ + KG AYI+D VN +V A V +HL +F L K Sbjct: 487 VCAQKLREWRKQGANVSVVDLKRAYLQIHVDRSLWPYQTVMYKGRRYCLTRLGFGLNVAPLIMKAVLNCVLSQDSTVKKGTSAYIDDILVNEDVVKATRVERHLARFGLTCK 598 HSP 2 Score: 76.2554 bits (186), Expect = 2.076e-42 Identity = 52/188 (27.66%), Postives = 87/188 (46.28%), Query Frame = 1 Query: 964 GNEINLNVLVTPKVVPACEVQLEMDVISILKGVIFRGIK-VTLANGHMRP*ICCLGVNVDTNEQGVIESRRVPNSV*NIDDKDL*A--NFERNA*TVKWDWIDS-APETKKPSISQYKVSHKAENEFNEAVENWIKNGWLQTYS----GEIKAVLPLLAVIQQNKAKVRPVLDYGKINEHVSSHNAQA 1503 G+E + +VT K E+ L M+ I+ L GV R + + G+ C G + ++++D A N A T +W W + P + + + +Y S + ++ E + WIKNGWL Y G K ++PL+AV Q NK KVRPV+D+ ++N ++ + A + Sbjct: 316 GSEAAVEAIVTDKRPLGFELILGMNGIAALGGVTVRDERRINFGVGNTFAAAVCNGGEI------------------RLEERDFTAIYNPTVRAWTARWKWTNGMQPTSLRNKVQEYPPSGEVREKYEEELGEWIKNGWLVPYDESKWGPAKGLIPLMAVSQDNKGKVRPVMDFRELNSYIEAFTADS 485 HSP 3 Score: 54.6842 bits (130), Expect = 2.076e-42 Identity = 35/110 (31.82%), Postives = 57/110 (51.82%), Query Frame = 1 Query: 1909 WNRDN*IDESQERSPSDNCFHGLGK*SNIFQ----LKLFDRLVRL*NDYLVTGWDQELDTMTV-AIMRKITDKV*KQDPVEGEWNVKNTDSAIFWCDASSLAYGVVV*IG 2223 W RD + + ER + F GK + F L++ ++ + + T WDQ ++ + +++ ++ KV DPV G WNV + A W DASSLA+GVV+ +G Sbjct: 623 WRRDAEVCNAPERLTRRSVFSFCGKLTGHFPVCGWLRVAAAFIKRKANEVTTSWDQVIENAELESLINEVASKVRSNDPVGGRWNVSG-EKARVWVDASSLAHGVVIEVG 731 HSP 4 Score: 76.2554 bits (186), Expect = 3.531e-10 Identity = 32/86 (37.21%), Postives = 54/86 (62.79%), Query Frame = 1 Query: 2269 YHMDHYFGVNRTLFSARKMDLLVSKSSIKEIVGQCKTSKRVYSLPIKSSKGKSSVTEVWQRLAVDTTHYLNSVFWSIIDCGPSRFS 2526 +H + GV RTL+ ++++ +VSK +++ + C + V P+K +G V E+WQR+A+D THY + S++DCGPSRF+ Sbjct: 873 HHKMGHPGVRRTLYFVKRINPMVSKRQVRQTIVNCDACQSVDPAPVKWKQGCLGVKEIWQRVAMDITHYRGMSYLSLVDCGPSRFA 958
BLAST of CCHC-type domain-containing protein vs. Planmine SMEST
Match: SMESG000064797.1 (SMESG000064797.1) HSP 1 Score: 201.445 bits (511), Expect = 6.913e-69 Identity = 99/133 (74.44%), Postives = 111/133 (83.46%), Query Frame = 1 Query: 964 GNEINLNVLVTPKVVPACEVQLEMDVISILKGVIFRGIKVTLANGHMRP*ICCLGVNVDTNEQGVIESRRVPNSV*NIDDKDL*ANFERNA*TVKWDWIDSAPETKKPSISQYKVSHKAENEFNEAVENWIKN 1362 G +INLNVLVTPKV+P CEV LEMD SIL+GVI RG KV LAN HMRP ICCL +NVDTN++GVIES+RVPNSV NI+DKD ANF+ NA TVKW+WIDSA E KPSISQYKV HKA+NEFNE VE+W KN Sbjct: 49 GKDINLNVLVTPKVIPRCEVLLEMDATSILRGVIVRGTKVELANEHMRPEICCLSINVDTNKRGVIESKRVPNSVKNIEDKDFLANFDGNAWTVKWNWIDSASEALKPSISQYKVPHKAKNEFNEVVESWTKN 181 HSP 2 Score: 80.8777 bits (198), Expect = 6.913e-69 Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 2 Query: 821 MSNRALWVTGCSQTMIEGYCNSRIKRNVLLVVGGKLTCYERSVSMNVM 964 MS +AL TGCSQTM+EGYCNS IKRNVLLV GGKLTCYERSV MNVM Sbjct: 1 MSKQALLYTGCSQTMVEGYCNSGIKRNVLLVGGGKLTCYERSVWMNVM 48
BLAST of CCHC-type domain-containing protein vs. Planmine SMEST
Match: SMESG000076049.1 (SMESG000076049.1) HSP 1 Score: 199.904 bits (507), Expect = 3.412e-54 Identity = 103/127 (81.10%), Postives = 113/127 (88.98%), Query Frame = 2 Query: 104 RLPKLIQVLGIYSENDESNVQEFIKKSRRAARVFGEAEVLAILPLVLTGNAYSMFDMLEDNLGGKTSLENMLLTLGKTFGKTPWMAVDELKKMQWKSNENLGVHLGNLRTLMELTAKEPDGLLTLFL 484 R PKLIQ+LGI S++DESNVQEFIKKSRRAARVFGEAEVLAIL LVLTGNA+ MFD+L+DNLG K SL+NMLLTLGKTFGKT W+A+ ELKKMQ KSNENL V+LGNLRTLMELT KE DGLL LF Sbjct: 8 RPPKLIQLLGICSDDDESNVQEFIKKSRRAARVFGEAEVLAILLLVLTGNAFKMFDILKDNLGEKMSLKNMLLTLGKTFGKTHWVALIELKKMQSKSNENLDVYLGNLRTLMELTGKEQDGLLRLFF 134 HSP 2 Score: 137.117 bits (344), Expect = 1.474e-42 Identity = 67/79 (84.81%), Postives = 69/79 (87.34%), Query Frame = 2 Query: 728 HFGKRYGRSVSATGFGQGNVHAPIILIRVYGMSNRALWVTGCSQTMIEGYCNSRIKRNVLLVVGGKLTCYERSVSMNVM 964 HFGKRYGRSV TGFGQGNV APIILI+VYG+S AL TGCSQTMIEGYCNS IKRNVLLV GGKLT YERSVSMNVM Sbjct: 135 HFGKRYGRSVYETGFGQGNVCAPIILIQVYGISKPALLDTGCSQTMIEGYCNSGIKRNVLLVGGGKLTFYERSVSMNVM 213 HSP 3 Score: 56.9954 bits (136), Expect = 1.474e-42 Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 1 Query: 964 GNEINLNVLVTPKVVPACEVQLEMDVISILKGVIFRGIK 1080 G EINLNVLVTPKV+P EV L MD SIL+ +I RGIK Sbjct: 214 GKEINLNVLVTPKVIPGYEVLLRMDATSILRDLIVRGIK 252 HSP 4 Score: 127.487 bits (319), Expect = 1.882e-35 Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = 1 Query: 2272 HMDHYFGVNRTLFSARKMDLLVSKSSIKEIVGQCKTSKRVYSLPIKSSKGKSSVTEVWQRLAVDTTHYLNSVFWSIIDCGPSRFS 2526 H+DH+FG+NRTLFSARKMD + +SS++EIVGQC+T K+ +S PIK SKG SV EVWQRLAVDT HY N VF S IDCGPSRFS Sbjct: 374 HVDHHFGINRTLFSARKMDPSILRSSVEEIVGQCQTCKQAHSSPIKWSKGNLSVPEVWQRLAVDTMHYDNYVFLSEIDCGPSRFS 458 HSP 5 Score: 42.743 bits (99), Expect = 1.882e-35 Identity = 31/64 (48.44%), Postives = 37/64 (57.81%), Query Frame = 2 Query: 2567 NNARSWWL-----LEILLDNSRTFLYIEIRTL*SILCKDNLLK-----RLSTLGRQYCG*SRSN 2728 +N RS +L EILLDNSRTF + EIRT LCK +K L TLG+ YCG S +N Sbjct: 473 DNLRSIFLDHAVPFEILLDNSRTFHFSEIRT----LCKLFYVKMIYPNALYTLGKPYCGKSPTN 532 HSP 6 Score: 63.929 bits (154), Expect = 3.880e-10 Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1 Query: 2044 LVTGWDQELDTMTVAIMRK-ITDKV*KQDPVEGEWNVKNTDSAIFWCDASSLAYGVVV*IGTV 2229 ++ G++ L +I+R I + KQ+PV GE NVKNTDS I WCDASSLA GVVV IGT+ Sbjct: 227 VIPGYEVLLRMDATSILRDLIVRGIKKQNPVGGECNVKNTDSGIVWCDASSLAIGVVVEIGTM 289
BLAST of CCHC-type domain-containing protein vs. Planmine SMEST
Match: SMESG000064600.1 (SMESG000064600.1) HSP 1 Score: 169.088 bits (427), Expect = 1.260e-45 Identity = 82/99 (82.83%), Postives = 87/99 (87.88%), Query Frame = 2 Query: 104 RLPKLIQVLGIYSENDESNVQEFIKKSRRAARVFGEAEVLAILPLVLTGNAYSMFDMLEDNLGGKTSLENMLLTLGKTFGKTPWMAVDELKKMQWKSNE 400 R PKLIQ+LGI S +DESNV EFIKKSRRAARVFG+AEVL ILPLVL GNAYSMFDMLEDNLG K SLEN+LLTLGKT G TPWM V ELKKMQWKSN+ Sbjct: 8 RPPKLIQILGICSRDDESNVNEFIKKSRRAARVFGKAEVLVILPLVLIGNAYSMFDMLEDNLGEKMSLENVLLTLGKTLGNTPWMTVAELKKMQWKSNK 106 HSP 2 Score: 91.6633 bits (226), Expect = 8.700e-30 Identity = 47/72 (65.28%), Postives = 54/72 (75.00%), Query Frame = 1 Query: 2311 SARKMDLLVSKSSIKEIVGQCKTSKRVYSLPIKSSKGKSSVTEVWQRLAVDTTHYLNSVFWSIIDCGPSRFS 2526 ++R+ D S+SS+KEIVGQC T KRV PIK KG SV EVWQRLAVDTT+Y N VF S+IDCG SRFS Sbjct: 111 ASRRTDSSASRSSVKEIVGQCHTCKRVDPSPIKWLKGHLSVPEVWQRLAVDTTNYGNFVFLSVIDCGSSRFS 182 HSP 3 Score: 59.3066 bits (142), Expect = 8.700e-30 Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 3 Query: 2505 LWTKQILKSGNKIYLRNHL*SIMLDHGGYSKYSWTIVERSSTLKLER----CDLFCVKIIY*NVYRPSVDSIVDKVDRTVKRTMAR 2750 +W K LKS N+I +R++ S+ L+HG + +++ S T C+L C+K+IY N Y+PS + IV++V RTVKRTM R Sbjct: 183 IWRK--LKSENEIDVRDNHRSVFLEHGVPVEI---LLDNSRTFNFNEIRTLCELLCLKMIYRNTYQPSGNGIVERVHRTVKRTMER 263 HSP 4 Score: 55.0694 bits (131), Expect = 1.723e-7 Identity = 37/94 (39.36%), Postives = 50/94 (53.19%), Query Frame = 2 Query: 2591 LEILLDNSRTFLYIEIRTL*SILCKDNLLKRLSTLGRQYCG*SRSNS*KNHGKGEV*YRKAAFLYNSLPTNGISLDSVPENLRSQHVWRYPFLY 2872 +EILLDNSRTF + EIRTL +LC + + N+ + G G V R + ++ +GI +P NLRSQHVWRYPF + Sbjct: 210 VEILLDNSRTFNFNEIRTLCELLCLKMIYR---------------NTYQPSGNGIV-ERVHRTVKRTMERSGI----IPANLRSQHVWRYPFEF 283
BLAST of CCHC-type domain-containing protein vs. Planmine SMEST
Match: SMESG000018454.1 (SMESG000018454.1) HSP 1 Score: 100.523 bits (249), Expect = 6.227e-40 Identity = 62/120 (51.67%), Postives = 72/120 (60.00%), Query Frame = 1 Query: 1876 IKMSQKIWEWIWNRDN*IDESQERSPSDNCFHGLGK*SNIFQLKLFDRLVRL*NDYLVTG--WDQELDTMTVAIMRKITDKV*KQDPVEGEWNVKNTDSAIFWCDASSLAYGVVV*IGTV 2229 +K +K + IWNRDN +DE QER F +G+ F L + R L+ WDQE+D MTV IMRKI DKV KQ PV GEWNVKNT I WC+AS LA GVVV IGTV Sbjct: 53 LKRVRKYGKLIWNRDNQVDELQERVTKRQLFSWVGQMIGNFSLARWLRPTCSFVKQLIGDREWDQEVDIMTVMIMRKIADKVQKQVPVGGEWNVKNTHPGIVWCNASRLAIGVVVEIGTV 172 HSP 2 Score: 84.7297 bits (208), Expect = 6.227e-40 Identity = 45/60 (75.00%), Postives = 48/60 (80.00%), Query Frame = 2 Query: 1721 MDAGICKGMDAYINDKFVNTSLVSAESVVKHL*KFELDAKNPYFIVRA*VLELK*VRKYG 1900 MDAGICK MDAYI+D FVNTSLVSAES VKHL KF L+AK+P FI VL LK VRKYG Sbjct: 1 MDAGICKAMDAYIDDIFVNTSLVSAESGVKHLRKFGLEAKDPEFIDGDRVLGLKRVRKYG 60
BLAST of CCHC-type domain-containing protein vs. Planmine SMEST
Match: SMESG000059416.1 (SMESG000059416.1) HSP 1 Score: 89.3521 bits (220), Expect = 5.024e-25 Identity = 43/102 (42.16%), Postives = 67/102 (65.69%), Query Frame = 2 Query: 1505 VLSKEIEEMVEMG*RCVAIDLKSAYLQIRVAESL*AFEVVKLQRKTFALTRLGFGLNVAPKIMTTVLKHVLSMDAGICKGMDAYINDKFVNTSLVSAESVVK 1810 V ++ I E + G + +DL AY+QIRV ES+ ++ + + +ALTRLGFG+N+AP IMT ++ HVLS++ I +G AYI+D F++ +V AE V+ Sbjct: 81 VCNETIREWRKKGNKIAILDLSDAYMQIRVDESMWKYQSCIINGRRYALTRLGFGINIAPGIMTEIVNHVLSLNDRIKQGASAYIDDIFIDKKVVPAEEEVE 182 HSP 2 Score: 45.8246 bits (107), Expect = 5.024e-25 Identity = 19/60 (31.67%), Postives = 35/60 (58.33%), Query Frame = 1 Query: 1336 EAVENWIKNGWLQTYS----GEIKAVLPLLAVIQQNKAKVRPVLDYGKINEHVSSHNAQA 1503 + ++ WI NGWL Y GE + L V+Q+NK+K+ P+ D+ +N ++ ++ +A Sbjct: 20 KVIKQWITNGWLVEYDENRFGEPVGAVTLFPVMQKNKSKISPIFDFRALNHYLDIYSGEA 79 The following BLAST results are available for this feature:
BLAST of CCHC-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of CCHC-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of CCHC-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of CCHC-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of CCHC-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of CCHC-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of CCHC-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of CCHC-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of CCHC-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of CCHC-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of CCHC-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of CCHC-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of CCHC-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of CCHC-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30026346 ID=SMED30026346|Name=CCHC-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2939bpback to top protein sequence of SMED30026346-orf-1 >SMED30026346-orf-1 ID=SMED30026346-orf-1|Name=SMED30026346-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=107bp MDLILSYHMDHYFGVNRTLFSARKMDLLVSKSSIKEIVGQCKTSKRVYSLback to top Annotated Terms
The following terms have been associated with this transcript:
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