Transposon Ty3-I Gag-Pol polyprotein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30026219 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Homology
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: CABCOCO1 (ciliary associated calcium binding coiled-coil 1 [Source:HGNC Symbol;Acc:HGNC:28678]) HSP 1 Score: 55.8398 bits (133), Expect = 1.293e-8 Identity = 46/196 (23.47%), Postives = 86/196 (43.88%), Query Frame = 2 Query: 302 KFSLIFSAIHYLLENIRTSQMSLKENVLELKTILTNDSENPGNPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLDLFVETLPSDSTPYPPPLCEALTTDLYRNCFSSVGSVRSHSAKSVD---NADFGQLEKDLDKFDKELSREISQFSDLSIDTISRVLKEECVNIFPPITAEIETKIQ 880 ++S + + L+N++T MSL+E++ L ++ + + D + + +L + QH+KL EF+F R + V+G + +E + S P+P PL E ++ D+Y + F ++ K +D + Q E D D +I+ + VL + +I I EI K+Q Sbjct: 7 QYSKFMTLLAMSLQNLKTLHMSLEESIKWLGEVMAEIGPTHSQKSEDW-NIFDVKQANAIIDYLKISLFQHYKLYEFMFYSAREEIVIGTEQVIEVVKSACGPFPNPLEEGISFDIY-STFIEPPTILDTEMKRLDQEQGPEESQPETDTSDMDP--------LVGFTIEDVKSVLDQVTDDILIGIQTEINEKLQ 192
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: CABCOCO1 (ciliary associated calcium binding coiled-coil 1 [Source:HGNC Symbol;Acc:HGNC:28678]) HSP 1 Score: 55.8398 bits (133), Expect = 1.293e-8 Identity = 46/196 (23.47%), Postives = 86/196 (43.88%), Query Frame = 2 Query: 302 KFSLIFSAIHYLLENIRTSQMSLKENVLELKTILTNDSENPGNPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLDLFVETLPSDSTPYPPPLCEALTTDLYRNCFSSVGSVRSHSAKSVD---NADFGQLEKDLDKFDKELSREISQFSDLSIDTISRVLKEECVNIFPPITAEIETKIQ 880 ++S + + L+N++T MSL+E++ L ++ + + D + + +L + QH+KL EF+F R + V+G + +E + S P+P PL E ++ D+Y + F ++ K +D + Q E D D +I+ + VL + +I I EI K+Q Sbjct: 7 QYSKFMTLLAMSLQNLKTLHMSLEESIKWLGEVMAEIGPTHSQKSEDW-NIFDVKQANAIIDYLKISLFQHYKLYEFMFYSAREEIVIGTEQVIEVVKSACGPFPNPLEEGISFDIY-STFIEPPTILDTEMKRLDQEQGPEESQPETDTSDMDP--------LVGFTIEDVKSVLDQVTDDILIGIQTEINEKLQ 192
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: CABCOCO1 (ciliary associated calcium binding coiled-coil 1 [Source:NCBI gene;Acc:100486238]) HSP 1 Score: 57.7658 bits (138), Expect = 2.283e-9 Identity = 43/178 (24.16%), Postives = 89/178 (50.00%), Query Frame = 2 Query: 350 RTSQMSLKENVLELKTILTNDSE-NPGNPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLDLFVETLPSDSTPYPPPLCEALTTDLYRNCFSSVGSVRSHSAKSVDNADFGQLEKDLDKFDKELSREISQFSDLSIDTISRVLKEECVNIFPPITAEIETKIQ 880 + +MSL+E++ +L +LT + +PG KG+L+ + ++ K + + + QH+KL E +FS R VLG + + + S+ T +P PL E +++++Y + V ++ Q ++L +K + E+ S +++ + VL + + + AEI K++ Sbjct: 6 KAKKMSLEEHLKDLGRLLTGIGQSHPGK--KGILALFNVDQAKDIISYFQMSLFQHYKLYECMFSVPRDVMVLGAENVISVVKSEPT-FPAPLEEGISSEIYSQYIAP--PVPQSPITGTGDSRINQPLEELGGNEK-TADEVDPLSGFTVEDVKTVLNQVTTEVIGSLQAEINEKLR 177
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Match: Cabcoco1 (ciliary associated calcium binding coiled-coil 1 [Source:MGI Symbol;Acc:MGI:1920537]) HSP 1 Score: 69.707 bits (169), Expect = 4.154e-13 Identity = 43/170 (25.29%), Postives = 81/170 (47.65%), Query Frame = 2 Query: 143 NLLDSHNLGDIEDILTTNFKIDSPELNLKSAIIIDFYVNLVIWLKETFQLDAAKFSLIFSAIHYLLENIRTSQMSLKENVLELKTILTNDSENPGNPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLDLFVETLPSDSTPYPPPLCEALTTDLY 652 +LL N I++ L + + L+ AI++D+YV+ W KE ++S + + LL N++T MSL++++ L ++ N + + E + +L + QH++L EF+F R + V+G + +E + P+P PL E ++ D Y Sbjct: 55 DLLGEENENGIQEKLGVFLNFKNLQTCLRDAILLDYYVSGFCWAKE-MNFSIEQYSKFMTLLDMLLHNLQTLHMSLEDSIKWLGEVMAEIGPNHSQKSEDF-HVFEVKEANAIIDYLKISLFQHYRLYEFLFYSTREEIVIGTEQTIEVVKPADYPFPAPLEEGISLDTY 222
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Match: Cabcoco1 (ciliary associated calcium binding coiled-coil 1 [Source:MGI Symbol;Acc:MGI:1920537]) HSP 1 Score: 52.373 bits (124), Expect = 1.293e-7 Identity = 29/117 (24.79%), Postives = 57/117 (48.72%), Query Frame = 2 Query: 302 KFSLIFSAIHYLLENIRTSQMSLKENVLELKTILTNDSENPGNPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLDLFVETLPSDSTPYPPPLCEALTTDLY 652 ++S + + LL N++T MSL++++ L ++ N + + E + +L + QH++L EF+F R + V+G + +E + P+P PL E ++ D Y Sbjct: 7 QYSKFMTLLDMLLHNLQTLHMSLEDSIKWLGEVMAEIGPNHSQKSEDF-HVFEVKEANAIIDYLKISLFQHYRLYEFLFYSTREEIVIGTEQTIEVVKPADYPFPAPLEEGISLDTY 122
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|Q8IVU9|CBCO1_HUMAN (Ciliary-associated calcium-binding coiled-coil protein 1 OS=Homo sapiens OX=9606 GN=CABCOCO1 PE=2 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 6.208e-8 Identity = 46/196 (23.47%), Postives = 86/196 (43.88%), Query Frame = 2 Query: 302 KFSLIFSAIHYLLENIRTSQMSLKENVLELKTILTNDSENPGNPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLDLFVETLPSDSTPYPPPLCEALTTDLYRNCFSSVGSVRSHSAKSVD---NADFGQLEKDLDKFDKELSREISQFSDLSIDTISRVLKEECVNIFPPITAEIETKIQ 880 ++S + + L+N++T MSL+E++ L ++ + + D + + +L + QH+KL EF+F R + V+G + +E + S P+P PL E ++ D+Y + F ++ K +D + Q E D D +I+ + VL + +I I EI K+Q Sbjct: 7 QYSKFMTLLAMSLQNLKTLHMSLEESIKWLGEVMAEIGPTHSQKSEDW-NIFDVKQANAIIDYLKISLFQHYKLYEFMFYSAREEIVIGTEQVIEVVKSACGPFPNPLEEGISFDIY-STFIEPPTILDTEMKRLDQEQGPEESQPETDTSDMDP--------LVGFTIEDVKSVLDQVTDDILIGIQTEINEKLQ 192
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|Q8CDT7|CBCO1_MOUSE (Ciliary-associated calcium-binding coiled-coil protein 1 OS=Mus musculus OX=10090 GN=Cabcoco1 PE=1 SV=2) HSP 1 Score: 52.373 bits (124), Expect = 9.043e-7 Identity = 29/117 (24.79%), Postives = 57/117 (48.72%), Query Frame = 2 Query: 302 KFSLIFSAIHYLLENIRTSQMSLKENVLELKTILTNDSENPGNPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLDLFVETLPSDSTPYPPPLCEALTTDLY 652 ++S + + LL N++T MSL++++ L ++ N + + E + +L + QH++L EF+F R + V+G + +E + P+P PL E ++ D Y Sbjct: 7 QYSKFMTLLDMLLHNLQTLHMSLEDSIKWLGEVMAEIGPNHSQKSEDF-HVFEVKEANAIIDYLKISLFQHYRLYEFLFYSTREEIVIGTEQTIEVVKPADYPFPAPLEEGISLDTY 122
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A1S3H837 (ciliary-associated calcium-binding coiled-coil protein 1 isoform X2 OS=Lingula unguis OX=7574 GN=LOC106152571 PE=4 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 2.438e-24 Identity = 70/284 (24.65%), Postives = 141/284 (49.65%), Query Frame = 2 Query: 41 SPKSSARNLAKTSVIESQRKPPNSFSIINELTCKNLLDSHNLGDIEDILTTNFKIDSPELNLKSAIIIDFYVNLVIWLKETFQLDAAKFSLIFSAIHYLLENIRTSQMSLKENVLELKTILTN-DSENPGNPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLDLFVETLPSDSTPYPPPLCEALTTDLYRNCFSSVGSVRSHSAKSVDNADFGQLEKDLDKFDKELSREISQFSDLSIDTISRVLKEECVNIFPPITAEIETKIQEIE 889 S K A+ +K ++ ++ ++ +++ + + L++ ++ ++ + ++ + +LK A I+D+YV W KE + S F+A+H +LEN++ +S+ +N+ E K +L ENP +P G L D N+ K V +L T I QH+KL EF+FS+ +A++++G DL V P+PPPL E + D++ + ++ D + + ++ + RE ++L D + +L + ++ E+ +K++E E Sbjct: 2 SKKKGAKGRSKAG-LDDEKDQSLAYKVLSSVQTQQLMEL-DVDQLQSKMVEVMQLPNHTADLKEAAILDYYVAGFWWGKER-GFTVQQLSGFFTALHRILENVKDKHLSMVDNLKEFKKMLVGVGQENPESP--GGLEFFDLNQAKMVADYLHTSIFQHYKLYEFIFSHTQAEEIIGADLDVNVAKPADMPWPPPLEEGVPEDIFNEHIRTPPPTPPPEPEAEDGNETPDDTRSKEEIAAQKEREAFLMAELGSDQVKAILSSVAKEMIGGLSTEMASKLRERE 280
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A210PX37 (Uncharacterized protein OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT17103 PE=4 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 3.193e-24 Identity = 69/262 (26.34%), Postives = 136/262 (51.91%), Query Frame = 2 Query: 110 SFSIINELTCKNLLDSHNLGDIEDILTTNFKIDSPELNLKSAIIIDFYVNLVIWLKETFQLDAAKFSLIFSAIHYLLENIRTSQMSLKENVLELKTILTNDSENPGNPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLDLFVETLPSDSTPYPPPLCEALTTDLYRNCFSSVGSVRSHSAKS--VDNADFGQLEKDLDKFDKELSREISQFSDLSIDTISRVLKEECVNIFPPITAEIETKIQEIE 889 ++ I++E CK LL ++ +++ L FK+ + +L+ A ++D+Y V W KE L + S F+ IH LL+N++ M++ +N+ E K +L L + + K V ++ T + QH+KL E +F+ +A++++G DL +ET S P+PPPL E ++ +++ + ++ A + +K +++ D +L +I FS+L++D + V++ + P+ +EI K++E E Sbjct: 49 AYKILSEDQCKTLL-GQDVDEMQTTLCDIFKLHNYTTDLRDAGVLDYYTGAVWWGKEQGFL-PQQLSGFFTVIHILLDNVKEQHMTMVDNLKEFKKLLIGIEPEYQQIKSAGLDFFNTQQAKAVTTYVTTCLFQHYKLYELMFNQTQAEEIIGTDLEIETAKPASVPFPPPLDEGVSQEMFASYIATPPPTPEPEVVKSEGGLAGEEEGDKAMEELDTKLDTDI--FSELTVDDVRAVIESVAKELLDPLQSEIAAKLREKE 306
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A1S3H6A7 (ciliary-associated calcium-binding coiled-coil protein 1 isoform X1 OS=Lingula unguis OX=7574 GN=LOC106152571 PE=4 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.023e-23 Identity = 65/224 (29.02%), Postives = 113/224 (50.45%), Query Frame = 2 Query: 221 NLKSAIIIDFYVNLVIWLKETFQLDAAKFSLIFSAIHYLLENIRTSQMSLKENVLELKTILTN-DSENPGNPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLDLFVETLPSDSTPYPPPLCEALTTDLYRNCFSSVGSVRSHSAKSVDNADFGQLEKDLDKFDKELSREISQFSDLSIDTISRVLKEECVNIFPPITAEIETKIQEIE 889 +LK A I+D+YV W KE + S F+A+H +LEN++ +S+ +N+ E K +L ENP +P G L D N+ K V +L T I QH+KL EF+FS+ +A++++G DL V P+PPPL E + D++ + ++ D + + ++ + RE ++L D + +L + ++ E+ +K++E E Sbjct: 89 DLKEAAILDYYVAGFWWGKER-GFTVQQLSGFFTALHRILENVKDKHLSMVDNLKEFKKMLVGVGQENPESP--GGLEFFDLNQAKMVADYLHTSIFQHYKLYEFIFSHTQAEEIIGADLDVNVAKPADMPWPPPLEEGVPEDIFNEHIRTPPPTPPPEPEAEDGNETPDDTRSKEEIAAQKEREAFLMAELGSDQVKAILSSVAKEMIGGLSTEMASKLRERE 309
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: V4ANB6 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_203888 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 5.955e-23 Identity = 69/261 (26.44%), Postives = 138/261 (52.87%), Query Frame = 2 Query: 110 SFSIINELTCKNLLDSHNLGDIEDILTTNFKIDSPELNLKSAIIIDFYVNLVIWLKETFQLDAAKFSLIFSAIHYLLENIRTSQMSLKENVLELKTILTN-DSENPGNPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLDLFVETLPSDSTPYPPPLCEALTTDLYRNCFSSVGSVRSHSAKSVDNADFGQLEKDLDKFDKELSREISQFSDLSIDTISRVLKEECVNIFPPITAEIETKIQEIE 889 ++ ++ CK LL + ++ +++ L+ FK+ +LK A I+D+Y V W KE + S F+ IH LL+N++ MS+ EN+ EL+ +L E+ P GL + + K ++ ++ + QH+K+ EF+FS+ +A++++G D+ VE + P+PPPL E + ++Y+ ++ + DN + K++D DK L +I+ +S+L+ + + +++ + + ++ K+QE E Sbjct: 2 AYKVLTADHCKELL-ALSVENMQLKLSDIFKLQDNLTDLKEASILDYYTAAVWWAKEN-SFTEQQLSGFFTVIHTLLDNVKEKHMSIIENIKELQKMLVGIGVEHAIQPSGGL-QFFNIQQAKLISDYVSNSLFQHYKIYEFMFSHTQAEEIIGTDVDVEVCLAADVPFPPPLDEGINENIYQQYIATPPPSPTPEPNEEDNT----VNKEVD-IDKVLPEDINIYSELTPEDVRDIIESVSKEMLGGLQTDVAKKLQEKE 254
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: R7TAA1 (Uncharacterized protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_221472 PE=4 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.619e-21 Identity = 63/213 (29.58%), Postives = 115/213 (53.99%), Query Frame = 2 Query: 47 KSSARNLAKTSVIESQRKPPNSFSIINELTCKNLL---DSHNLG-DIEDILTTNFKIDSPELNLKSAIIIDFYVNLVIWLKETFQLDAAKFSLIFSAIHYLLENIRTSQMSLKENVLELKTILTNDSENPG-NPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLDLFVETLPSDSTPYPPPLCEALTTDLYRNCFSS 670 + S R+ A+ V+E +++ ++ +++ K+L D+ L +I D L + D ++LK + +D +V + W K+ + + S IF+ +H LL+NI+ + + +N+LE K +L G + G L LD + K + +L QHH+L EFVF++ +A++V+G DL VET S P+PPPL EA+ + ++ ++ Sbjct: 25 RKSGRSSARKHVVEEEKET-LAYKVLSAEMTKSLYALDDADELQRNISDFLK---RTDRLSVDLKDGVCVDHFVAGLWWCKQQ-AMTIEQTSAIFTVLHTLLDNIKEKHLGMVQNLLEYKKMLVGIGVELGPDQTGGGLECLDIGQAKMLTDYLQLSFFQHHRLFEFVFTHTQAEEVIGTDLEVETPKSADVPWPPPLIEAVPEETFKQYIAT 232
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: cabcoco1 (ciliary associated calcium binding coiled-coil 1 [Source:NCBI gene;Acc:103021761]) HSP 1 Score: 55.8398 bits (133), Expect = 1.208e-8 Identity = 36/146 (24.66%), Postives = 70/146 (47.95%), Query Frame = 2 Query: 224 LKSAIIIDFYVNLVIWLKETFQLDAAKFSLIFSAIHYLLENIRTSQMSLKEN----VLELKTILTNDSENPGNPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLDLFVETLPSDSTPYPPPLCEALTTDL 649 LK A ++D++V W KE + S I + + LL+NI+ QM EN L + S+ NP D +++K + + + + QH++L +F+F+ R + +L ++ ++ ++S + PL E + +L Sbjct: 41 LKEAALLDYFVGGFWWAKE-MNFTCQQSSFIMALLQLLLDNIKDKQMPFAENFKAFTQNLLATRMSSSDTAVNPL------FDVDQIKSITDYFKSSLFQHYRLYQFLFTQPREEMILRMERSIDV--ANSADFAAPLEEGMPPEL 177
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: cabcoco1 (ciliary associated calcium binding coiled-coil 1 [Source:NCBI gene;Acc:103021761]) HSP 1 Score: 55.8398 bits (133), Expect = 1.255e-8 Identity = 36/146 (24.66%), Postives = 70/146 (47.95%), Query Frame = 2 Query: 224 LKSAIIIDFYVNLVIWLKETFQLDAAKFSLIFSAIHYLLENIRTSQMSLKEN----VLELKTILTNDSENPGNPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLDLFVETLPSDSTPYPPPLCEALTTDL 649 LK A ++D++V W KE + S I + + LL+NI+ QM EN L + S+ NP D +++K + + + + QH++L +F+F+ R + +L ++ ++ ++S + PL E + +L Sbjct: 41 LKEAALLDYFVGGFWWAKE-MNFTCQQSSFIMALLQLLLDNIKDKQMPFAENFKAFTQNLLATRMSSSDTAVNPL------FDVDQIKSITDYFKSSLFQHYRLYQFLFTQPREEMILRMERSIDV--ANSADFAAPLEEGMPPEL 177
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: cabcoco1 (ciliary associated calcium binding coiled-coil 1 [Source:NCBI gene;Acc:103021761]) HSP 1 Score: 50.0618 bits (118), Expect = 9.647e-7 Identity = 36/151 (23.84%), Postives = 70/151 (46.36%), Query Frame = 2 Query: 224 LKSAIIIDFYVNLVIWLKETFQLDAAKFSLIFSAIHYLLENIRT-----SQMSLKEN----VLELKTILTNDSENPGNPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLDLFVETLPSDSTPYPPPLCEALTTDL 649 LK A ++D++V W KE + S I + + LL+NI+ QM EN L + S+ NP D +++K + + + + QH++L +F+F+ R + +L ++ ++ ++S + PL E + +L Sbjct: 41 LKEAALLDYFVGGFWWAKE-MNFTCQQSSFIMALLQLLLDNIKVHSVSDKQMPFAENFKAFTQNLLATRMSSSDTAVNPL------FDVDQIKSITDYFKSSLFQHYRLYQFLFTQPREEMILRMERSIDV--ANSADFAAPLEEGMPPEL 182
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: cabcoco1 (ciliary associated calcium binding coiled-coil 1 [Source:NCBI gene;Acc:103021761]) HSP 1 Score: 50.0618 bits (118), Expect = 1.014e-6 Identity = 36/151 (23.84%), Postives = 70/151 (46.36%), Query Frame = 2 Query: 224 LKSAIIIDFYVNLVIWLKETFQLDAAKFSLIFSAIHYLLENIRT-----SQMSLKEN----VLELKTILTNDSENPGNPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLDLFVETLPSDSTPYPPPLCEALTTDL 649 LK A ++D++V W KE + S I + + LL+NI+ QM EN L + S+ NP D +++K + + + + QH++L +F+F+ R + +L ++ ++ ++S + PL E + +L Sbjct: 41 LKEAALLDYFVGGFWWAKE-MNFTCQQSSFIMALLQLLLDNIKVHSVSDKQMPFAENFKAFTQNLLATRMSSSDTAVNP------LFDVDQIKSITDYFKSSLFQHYRLYQFLFTQPREEMILRMERSIDV--ANSADFAAPLEEGMPPEL 182
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000001266.1 (pep scaffold:Pmarinus_7.0:GL477743:23012:42371:1 gene:ENSPMAG00000001138.1 transcript:ENSPMAT00000001266.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 63.5438 bits (153), Expect = 2.371e-12 Identity = 50/175 (28.57%), Postives = 83/175 (47.43%), Query Frame = 2 Query: 149 LDSHNLGDIEDILTTNFKIDSPELNLKSAIIIDFYVNLVIWLKETFQLDAAKFSLIFSAIHYLLENIRTSQMSLKENVLELKTILTNDSENPGNPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLD-----LFVETLPSDSTPYPPPLCEALTTDLYRN 658 L S L +++ L + E +L+ A ++D YV+ W +E + + + + +H LL+NI +M L EN+ L G C L + L + K V +L T + QH++L EFVF+ + Q V+ +D + VE L + P+P PL E + D+Y Sbjct: 28 LASLTLEEVQTHLAEMLHLREHETSLREAALLDVYVSAYRWARE-HGFSSQQILYVVTLLHTLLQNIEERRMKLVENLKACSRQLV------GVGCDDL-ACLSLEQGKLVLGYLTTSLFQHYRLYEFVFT--QPQDVVIIDSQQCSIEVEMLEINQKPFPLPLEEGIDADIYER 192
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000001269.1 (pep scaffold:Pmarinus_7.0:GL477743:23012:42371:1 gene:ENSPMAG00000001138.1 transcript:ENSPMAT00000001269.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 61.2326 bits (147), Expect = 6.248e-12 Identity = 43/146 (29.45%), Postives = 72/146 (49.32%), Query Frame = 2 Query: 215 ELNLKSAIIIDFYVNLVIWLKETFQLDAAKFSLIFSAIHYLLENIRTSQMSLKENVLELKTILTNDSENPGNPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLDLFVETLPSDSTPYPPPLCEALTTDLY 652 E +L+ A ++D YV+ W +E + + + + +H LL+NI +M L EN+ L G C L + L + K V +L T + QH++L EFVF+ + ++ + VE L + P+P PL E + D+Y Sbjct: 8 ETSLREAALLDVYVSAYRWARE-HGFSSQQILYVVTLLHTLLQNIEERRMKLVENLKACSRQLV------GVGCDDL-ACLSLEQGKLVLGYLTTSLFQHYRLYEFVFTQPQDVVIIDSQIEVEMLEINQKPFPLPLEEGIDADIY 145
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Nematostella
Match: EDO36882 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SHF5]) HSP 1 Score: 79.337 bits (194), Expect = 5.993e-17 Identity = 71/292 (24.32%), Postives = 134/292 (45.89%), Query Frame = 2 Query: 32 KPKSPKSSARNLAKTSVIESQRKPPNSFSIINE---LTCKNLLDSHNLGDIEDILT-TNFKIDSPELNLKSAIIIDFYVNLVIWLKETFQLDAAKFSLIFSAIHYLLENIRTSQMSLKENVLELKTILTN-DSENPGNPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLDLFVETLPSDSTPYPPPLCEALTTDLYRN-CFSSVGSVRSHSAKSVDNADFGQLEKDLDKFDKELSREISQFSDLSIDTISRVLKEECVNIFPPITAEIETKIQEIE 889 + KS K ++S E + K ++ +++E L+ K L + + +IL N+ I PE A ++D+YV+ W + + + S + + LLENI+ Q+SL E++ E + +L EN G L D ++ K + + + +H+KL +F+F+ ++V +L +E P P+PPPL E +T +++R + S + + G + +KE++ I + L + I ++K + F E+ETK++E E Sbjct: 18 RKKSAKQGDNKGRRSSQEEEEVKESLAWKVLSEEQTLSLKELTVTELEAKMAEILGIENYHISLPE-----ACVLDYYVS-GFWFTKEQNFNTQQCSAFVTVLKILLENIKEKQLSLVESLKEFRNLLVGIGVENCSK--TGGLECFDVSQAKLITDYFTESLFKHYKLYKFLFTQEPEEEVTNTELTIEVPPLACVPFPPPLDEGMTEEVWRAYIMTPPPSPQPEKETEEEEGKAGS--SGISAANKEVAENI--LASLKPEDIKTIVKRAAEDTFGSFKLEVETKLKERE 297
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000023344.1 (SMESG000023344.1) HSP 1 Score: 583.948 bits (1504), Expect = 0.000e+0 Identity = 288/289 (99.65%), Postives = 288/289 (99.65%), Query Frame = 2 Query: 23 MTTKPKSPKSSARNLAKTSVIESQRKPPNSFSIINELTCKNLLDSHNLGDIEDILTTNFKIDSPELNLKSAIIIDFYVNLVIWLKETFQLDAAKFSLIFSAIHYLLENIRTSQMSLKENVLELKTILTNDSENPGNPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLDLFVETLPSDSTPYPPPLCEALTTDLYRNCFSSVGSVRSHSAKSVDNADFGQLEKDLDKFDKELSREISQFSDLSIDTISRVLKEECVNIFPPITAEIETKIQEIE 889 MTTK KSPKSSARNLAKTSVIESQRKPPNSFSIINELTCKNLLDSHNLGDIEDILTTNFKIDSPELNLKSAIIIDFYVNLVIWLKETFQLDAAKFSLIFSAIHYLLENIRTSQMSLKENVLELKTILTNDSENPGNPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLDLFVETLPSDSTPYPPPLCEALTTDLYRNCFSSVGSVRSHSAKSVDNADFGQLEKDLDKFDKELSREISQFSDLSIDTISRVLKEECVNIFPPITAEIETKIQEIE Sbjct: 1 MTTKAKSPKSSARNLAKTSVIESQRKPPNSFSIINELTCKNLLDSHNLGDIEDILTTNFKIDSPELNLKSAIIIDFYVNLVIWLKETFQLDAAKFSLIFSAIHYLLENIRTSQMSLKENVLELKTILTNDSENPGNPCKGLLSTLDGNELKKVNQFLLTGIIQHHKLMEFVFSYHRAQKVLGLDLFVETLPSDSTPYPPPLCEALTTDLYRNCFSSVGSVRSHSAKSVDNADFGQLEKDLDKFDKELSREISQFSDLSIDTISRVLKEECVNIFPPITAEIETKIQEIE 289 The following BLAST results are available for this feature:
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 2
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 4
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30026219 ID=SMED30026219|Name=Transposon Ty3-I Gag-Pol polyprotein|organism=Schmidtea mediterranea sexual|type=transcript|length=946bpback to top protein sequence of SMED30026219-orf-1 >SMED30026219-orf-1 ID=SMED30026219-orf-1|Name=SMED30026219-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=302bp MTTKPKSPKSSARNLAKTSVIESQRKPPNSFSIINELTCKNLLDSHNLGDback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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