SMED30026134

Overview
NameSMED30026134
Smed IDSMED30026134
Length (bp)1471
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30026134 (SMED30026134) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30026134 (SMED30026134) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30026134 (SMED30026134) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30026134 (SMED30026134) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30026134

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 22

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30026134SMESG000023123.1 SmedASXL_016719SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
pharynxSMED30026134SMESG000023123.1 dd_Smed_v4_9554_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30026134SMESG000023123.1 dd_Smed_v4_9554_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30026134SMESG000023123.1 dd_Smed_v4_9554_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30026134SMESG000023123.1 dd_Smed_v4_9554_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30026134SMESG000023123.1 dd_Smed_v4_9554_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30026134SMESG000023123.1 dd_Smed_v4_8764_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30026134SMESG000023123.1 dd_Smed_v4_8764_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30026134SMESG000023123.1 dd_Smed_v4_8764_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30026134SMESG000023123.1 dd_Smed_v4_8764_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30026134SMESG000023123.1 dd_Smed_v4_8764_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30026134SMESG000023123.1 dd_Smed_v4_8764_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30026134SMESG000023123.1 dd_Smed_v4_8764_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30026134SMESG000023123.1 dd_Smed_v6_8764_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
head regionSMED30026134SMESG000023123.1 dd_Smed_v6_9554_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
epidermisSMED30026134SMESG000023123.1 Contig37189newmark_estsPMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
epidermisSMED30026134SMESG000023123.1 Contig37189uc_Smed_v2PMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
neuronSMED30026134SMESG000023123.1 Contig37189newmark_estsPMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
neuronSMED30026134SMESG000023123.1 Contig37189uc_Smed_v2PMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
head regionSMED30026134SMESG000023123.1 Contig37189newmark_estsPMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
head regionSMED30026134SMESG000023123.1 Contig37189uc_Smed_v2PMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
epidermisSMED30026134SMESG000023123.1 dd_Smed_v4_9554_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of SMED30026134 vs. Planmine SMEST
Match: SMESG000023123.1 (SMESG000023123.1)

HSP 1 Score: 761.911 bits (1966), Expect = 0.000e+0
Identity = 392/404 (97.03%), Postives = 393/404 (97.28%), Query Frame = 3 
Query:  219 SDIEEFSVQIRRSGTTLRNKFLRILSLSSVPFIQIVSTSKTTIRDVNISSAAGIFISFKSVNSENVXXXXXXXXXXXXRFSDINAFNICKTTFDELFRKVLNKRESIKLFSDNYRTSSGFQTNSCPISRNSEFMNDADNSLLITSKISFGEDSADNDDQTYVTIVGTVDADLSDNGYIDIGSRDSGVPFCDDIFAYDYEVPEYSSQVEPLFGGYESLEKFEKFRSDNTNSSVFLAMKIREEVLNRGGVKVELDEEFLHSFKVKLIENKLWVCHVNINNNNKLHVGDRIVTVNGRLPKDVFDFQQICHNSRASIIIQRLPKAKVFAYDMNILNRPGIKLFKEKLYFKINTKFRREKWKITEINLQNILNVDPASLANIKKKLSQERPIMTFVTHSAEFANALSKP 1430
            SDIEEFSVQIRRSGT LRNKFLRILSLSSVPFIQIVSTSK TIRDVNISSAAGIFISFKSVNSENVLKLLLKEDKIELRFSDINAFNICKTTFDELFRKVLNKRESIKLFSDNYR SSGFQTNSCPISRNSEFMNDADNSLLITSKI   EDSADNDDQTYVTIVGTVDADLSDNGYIDIGSRDSGVPFCDDIFAYDYEVPEYSSQVEPLFGGYESLEKFEKFRSDNTNSSVFLAMKIREEVLNRGGVKVELDEEFLHSFKVKLIENKLWVCHVNINNNNKLHVGDRIVTVNGRLPKDVFDFQQICHNSRASIIIQRLPKAKVFAYDM   NR GIKLFKEKLYFKINTKFRREKWKITEINLQNILNVDPA LANIKK+LSQERPIMTFVTHSAEFANALSKP
Sbjct:   13 SDIEEFSVQIRRSGTKLRNKFLRILSLSSVPFIQIVSTSKPTIRDVNISSAAGIFISFKSVNSENVLKLLLKEDKIELRFSDINAFNICKTTFDELFRKVLNKRESIKLFSDNYRHSSGFQTNSCPISRNSEFMNDADNSLLITSKIFLDEDSADNDDQTYVTIVGTVDADLSDNGYIDIGSRDSGVPFCDDIFAYDYEVPEYSSQVEPLFGGYESLEKFEKFRSDNTNSSVFLAMKIREEVLNRGGVKVELDEEFLHSFKVKLIENKLWVCHVNINNNNKLHVGDRIVTVNGRLPKDVFDFQQICHNSRASIIIQRLPKAKVFAYDMINSNRQGIKLFKEKLYFKINTKFRREKWKITEINLQNILNVDPAILANIKKQLSQERPIMTFVTHSAEFANALSKP 416
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BLAST of SMED30026134 vs. Planmine SMEST
Match: SMESG000023122.1 (SMESG000023122.1)

HSP 1 Score: 166.777 bits (421), Expect = 9.319e-47
Identity = 136/415 (32.77%), Postives = 211/415 (50.84%), Query Frame = 3 
Query:  207 MISSSDIEEFSVQIRRSGTTLRNKFLRILSLSSVPFIQIVSTSKTTIRDVNISSAAGIFISFKSVNSENVXXXXXXXXXXXXRFSDINAFNICKTTFDELFRKVLNKRESIKLFSDNYRTSSGFQTNSCPISRNSEFMNDADNSL---LITSKISFGEDSADNDDQTYVTIVGTVDADLSDNGYIDIGSRDSGVPFCDDIFAYDYEVPEYSSQVEPLFGGYESLEKFEKFRSDNT--NSSVFLAMKIREEVLNRGGVKVELDEEFLHSFKVKLIENKLWVCHVNINN--NNKLHVGDRIVTVNGRLPKDVFDFQQICHNSRASI-IIQRLPKAKVFAYDMNILNRPGIKLFKEKLYFKINTKFRREKWKITEINLQNILNV-DPASLANIKKKLSQERPIMTFVTHSAEFANALS 1424
            M+     EE+ V        ++ K +RI+ + ++P+IQ++  S + ++D++ISSAA  FI F ++N    +KL+L   K++L F+D+  FN CK + D +      +R+S    S + RT S     S     NS   N++ NS    L   K+S   +  D ++                                  IF  DYE+PEY  + + + GGY +LE F  FR+ NT  +S++F+AMKIREEV N GGV + + +  + + +VK++  KLW+  +   N  N  LHVGDRI++VN R   D+  F++   N    I I+QRLPKA+VF +D N L+   IKL K   +    TK +   W ITEIN    +N+ D   ++NI+  +S     +  + H A F   LS
Sbjct:    1 MLREDSYEEYPV-FMIGKLRVKEKRIRIMRIQNLPYIQLI-LSNSRVKDIDISSAAKCFIKFNTLNFNRSIKLILARKKLQLYFNDVEVFNQCKRSIDTVLTTYHQERQSGS--SSHPRTDSD-SNQSDKSDSNSLNENNSPNSASQSLKPRKLSCQLNFLDGENA---------------------------------IFNKDYEIPEYQPEAQTMNGGYITLETFP-FRNKNTFNDSNIFVAMKIREEVCNFGGVTITVGKHLIENIQVKVMNKKLWISDIQNWNEMNASLHVGDRIISVNERPVNDLQTFRECTKNREDYILIVQRLPKARVFVFDKNKLDVKTIKLEKNNFFLTKPTKPKDLDWAITEINRTKTVNINDQNIISNIQSVISSYIRYLAVIIHPARFIKNLS 376
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BLAST of SMED30026134 vs. Planmine SMEST
Match: SMESG000023122.1 (SMESG000023122.1)

HSP 1 Score: 162.54 bits (410), Expect = 2.272e-45
Identity = 127/384 (33.07%), Postives = 204/384 (53.12%), Query Frame = 3 
Query:  291 LSLSSVPFIQIVSTSKTTIRDVNISSAAGIFISFKSVNSENVXXXXXXXXXXXXRFSDINAFNICKTTFDELFRKVLNKRESIKLFSDNYRTSSGFQTNSCPISRNSEFMNDADNSLLITSKISFGEDSADNDDQTYVTIVGTVDADLSDNGYIDIGSRDSGVPFCDDIFAYDYEVPEYSSQVEPLFGGYESLEKFEKFRSDNT--NSSVFLAMKIREEVLNRGGVKVELDEEFLHSFKVKLIENKLWVCHVNINN--NNKLHVGDRIVTVNGRLPKDVFDFQQICHNSRASI-IIQRLPKAKVFAYDMNILNRPGIKLFKEKLYFKINTKFRREKWKITEINLQNILNV-DPASLANIKKKLSQERPIMTFVTHSAEFANALS 1424
            + + ++P+IQ++  S + ++D++ISSAA  FI F ++N    +KL+L   K++L F+D+  FN CK + D +      +R+S         +SS  +T+S     N    +D++         S  E+++ N     +  +         N ++D G         + IF  DYE+PEY  + + + GGY +LE F  FR+ NT  +S++F+AMKIREEV N GGV + + +  + + +VK++  KLW+  +   N  N  LHVGDRI++VN R   D+  F++   N    I I+QRLPKA+VF +D N L+   IKL K   +    TK +   W ITEIN    +N+ D   ++NI+  +S     +  + H A F   LS
Sbjct:    1 MRIQNLPYIQLI-LSNSRVKDIDISSAAKCFIKFNTLNFNRSIKLILARKKLQLYFNDVEVFNQCKRSIDTVLTTYHQERQS--------GSSSHPRTDS---DSNQSDKSDSN---------SLNENNSPNSASQSLKFIQPRKLSCQLN-FLD-GE--------NAIFNKDYEIPEYQPEAQTMNGGYITLETFP-FRNKNTFNDSNIFVAMKIREEVCNFGGVTITVGKHLIENIQVKVMNKKLWISDIQNWNEMNASLHVGDRIISVNERPVNDLQTFRECTKNREDYILIVQRLPKARVFVFDKNKLDVKTIKLEKNNFFLTKPTKPKDLDWAITEINRTKTVNINDQNIISNIQSVISSYIRYLAVIIHPARFIKNLS 352
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BLAST of SMED30026134 vs. Planmine SMEST
Match: SMESG000023122.1 (SMESG000023122.1)

HSP 1 Score: 160.999 bits (406), Expect = 7.779e-45
Identity = 129/387 (33.33%), Postives = 199/387 (51.42%), Query Frame = 3 
Query:  291 LSLSSVPFIQIVSTSKTTIRDVNISSAAGIFISFKSVNSENVXXXXXXXXXXXXRFSDINAFNICKTTFDELFRKVLNKRESIKLFSDNYRTSSGFQTNSCPISRNSEFMNDADNSL---LITSKISFGEDSADNDDQTYVTIVGTVDADLSDNGYIDIGSRDSGVPFCDDIFAYDYEVPEYSSQVEPLFGGYESLEKFEKFRSDNT--NSSVFLAMKIREEVLNRGGVKVELDEEFLHSFKVKLIENKLWVCHVNINN--NNKLHVGDRIVTVNGRLPKDVFDFQQICHNSRASI-IIQRLPKAKVFAYDMNILNRPGIKLFKEKLYFKINTKFRREKWKITEINLQNILNV-DPASLANIKKKLSQERPIMTFVTHSAEFANALS 1424
            + + ++P+IQ++  S + ++D++ISSAA  FI F ++N    +KL+L   K++L F+D+  FN CK + D +      +R+S    S + RT S     S     NS   N++ NS    L   K+S   +  D ++                                  IF  DYE+PEY  + + + GGY +LE F  FR+ NT  +S++F+AMKIREEV N GGV + + +  + + +VK++  KLW+  +   N  N  LHVGDRI++VN R   D+  F++   N    I I+QRLPKA+VF +D N L+   IKL K   +    TK +   W ITEIN    +N+ D   ++NI+  +S     +  + H A F   LS
Sbjct:    1 MRIQNLPYIQLI-LSNSRVKDIDISSAAKCFIKFNTLNFNRSIKLILARKKLQLYFNDVEVFNQCKRSIDTVLTTYHQERQSGS--SSHPRTDSD-SNQSDKSDSNSLNENNSPNSASQSLKPRKLSCQLNFLDGENA---------------------------------IFNKDYEIPEYQPEAQTMNGGYITLETFP-FRNKNTFNDSNIFVAMKIREEVCNFGGVTITVGKHLIENIQVKVMNKKLWISDIQNWNEMNASLHVGDRIISVNERPVNDLQTFRECTKNREDYILIVQRLPKARVFVFDKNKLDVKTIKLEKNNFFLTKPTKPKDLDWAITEINRTKTVNINDQNIISNIQSVISSYIRYLAVIIHPARFIKNLS 349
[Close]
BLAST of SMED30026134 vs. Planmine SMEST
Match: SMESG000023121.1 (SMESG000023121.1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.728e-15
Identity = 58/171 (33.92%), Postives = 88/171 (51.46%), Query Frame = 3 
Query:  936 EEVLNRGGVKVELDEEFLHSFKVKLIENKLWVCHVNINNNNK--LHVGDRIVTVNGRLPKDVFDFQQICHN-SRASIIIQRLPKAKVFAYDMNILNRPGIKLFKEKLYFKINTKFRREKWKITEINLQNILNVDPASLANIKKK---LSQERPIMTFVTHSAEFANALSKP 1430
            +E  N G + V+L ++    + + L   +LWV  V  + N K  LH GD +V V+G    D+F FQ+   N ++ SI ++RLP AKVF +++++ N P I +    L F I +K    KW +TE+N + IL+V      N K K    S    +   V H  EF N +  P
Sbjct:  173 KERTNGGQINVDLTDDRKDKYNIALFNGQLWVATVKYSENEKRKLHFGDMVVAVDGISVNDMFSFQEYVRNKTKFSIAVKRLPNAKVFLFNISMSNPPKISIENCNLTF-IESKI---KWIVTEVNEEFILDV-----LNTKHKDVIFSSSSKLNLVVAHKKEFVNNIQNP 334
The following BLAST results are available for this feature:
BLAST of SMED30026134 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026134 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026134 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026134 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026134 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026134 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026134 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026134 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026134 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026134 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026134 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026134 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026134 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30026134 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000023123.10.000e+097.03SMESG000023123.1[more]
SMESG000023122.19.319e-4732.77SMESG000023122.1[more]
SMESG000023122.12.272e-4533.07SMESG000023122.1[more]
SMESG000023122.17.779e-4533.33SMESG000023122.1[more]
SMESG000023121.11.728e-1533.92SMESG000023121.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30026134 ID=SMED30026134|Name=SMED30026134|organism=Schmidtea mediterranea sexual|type=transcript|length=1471bp
AAACTTTGAAAGAATTCACAACGCAGTTTGATGCAATTTAAACAATTGCG
GTCTATATGGTAATTTCAATTAATTAAAAATTAATCGATCAAGTCTATTA
ATATGCTTGCCGACCGAATTTAGCAACCAATCAAATTGCAGCATTAACAA
CACAATTGATTTAACATTTATATATATATGAAACAAAACTTTTCCTTGAT
ATTCAAATGATTTCTAGCTCTGATATTGAAGAATTTTCAGTTCAAATTCG
ACGATCTGGAACAACATTGAGAAACAAATTCTTACGAATTTTATCTCTAA
GTTCCGTTCCATTTATACAGATTGTTTCTACTTCAAAAACAACAATTAGA
GACGTCAACATATCATCTGCTGCTGGGATTTTCATTTCTTTTAAGTCCGT
AAACTCGGAAAACGTTTTGAAGCTTTTGCTGAAAGAAGATAAAATTGAAT
TAAGATTTTCCGATATAAATGCTTTCAACATTTGTAAGACGACCTTTGAT
GAATTATTCCGTAAAGTTCTAAACAAAAGAGAAAGTATAAAGCTGTTTTC
AGATAATTACCGAACTAGCAGCGGCTTTCAAACAAATTCTTGCCCGATAT
CAAGAAATTCCGAATTTATGAATGATGCAGATAATTCTTTGTTAATTACA
AGTAAAATTTCTTTTGGTGAAGACTCCGCCGATAATGACGACCAAACCTA
TGTCACAATAGTAGGGACTGTTGACGCGGATCTATCTGATAATGGATACA
TAGATATTGGGTCAAGAGATTCCGGTGTTCCATTTTGTGACGACATTTTC
GCTTATGATTATGAAGTACCCGAATACAGTTCCCAAGTTGAACCTTTGTT
TGGAGGCTATGAAAGTTTGGAAAAATTCGAAAAATTCCGATCGGACAATA
CGAATTCCAGCGTGTTTTTGGCGATGAAAATCCGAGAGGAAGTTTTGAAT
AGGGGCGGCGTAAAAGTCGAATTAGATGAGGAATTTCTCCATTCATTCAA
AGTCAAATTAATTGAAAATAAGCTTTGGGTGTGTCATGTTAATATAAATA
ATAATAATAAATTGCATGTCGGGGACCGAATAGTCACAGTCAACGGGAGG
CTTCCCAAAGATGTATTTGACTTCCAGCAAATCTGTCATAACAGCCGAGC
TAGTATAATAATTCAAAGGTTGCCAAAAGCCAAAGTTTTCGCCTATGATA
TGAACATATTGAATAGGCCAGGAATTAAATTGTTTAAAGAAAAATTGTAT
TTTAAAATCAATACAAAATTTAGAAGAGAGAAGTGGAAAATCACAGAGAT
TAATCTACAGAATATCTTGAATGTTGATCCAGCTAGCCTTGCAAATATTA
AGAAAAAATTATCCCAAGAAAGACCAATAATGACTTTTGTAACTCATTCT
GCAGAATTTGCCAATGCACTTAGTAAACCTTGATTCGATTCATCAGTTCA
ATGTACAAATATATTTTATGT
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protein sequence of SMED30026134-orf-1

>SMED30026134-orf-1 ID=SMED30026134-orf-1|Name=SMED30026134-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=409bp
MISSSDIEEFSVQIRRSGTTLRNKFLRILSLSSVPFIQIVSTSKTTIRDV
NISSAAGIFISFKSVNSENVLKLLLKEDKIELRFSDINAFNICKTTFDEL
FRKVLNKRESIKLFSDNYRTSSGFQTNSCPISRNSEFMNDADNSLLITSK
ISFGEDSADNDDQTYVTIVGTVDADLSDNGYIDIGSRDSGVPFCDDIFAY
DYEVPEYSSQVEPLFGGYESLEKFEKFRSDNTNSSVFLAMKIREEVLNRG
GVKVELDEEFLHSFKVKLIENKLWVCHVNINNNNKLHVGDRIVTVNGRLP
KDVFDFQQICHNSRASIIIQRLPKAKVFAYDMNILNRPGIKLFKEKLYFK
INTKFRREKWKITEINLQNILNVDPASLANIKKKLSQERPIMTFVTHSAE
FANALSKP*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000099neuron
PLANA:0000418head
PLANA:0002032epidermal cell
PLANA:0003116parenchymal cell